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Molecular and morphological analysis of the critically endangered Fijian iguanas reveals cryptic diversity and a complex biogeographic history

The Pacific iguanas of the Fijian and Tongan archipelagos are a biogeographic enigma in that their closest relatives are found only in the New World. They currently comprise two genera and four species of extinct and extant taxa. The two extant species, Brachylophus fasciatus from Fiji, Tonga, and Vanuatu and Brachylophus vitiensis from western Fiji, are of considerable conservation concern with B. vitiensis listed as critically endangered. A recent molecular study has shown that Brachylophus comprised three evolutionarily significant units. To test these conclusions and to reevaluate the phylogenetic and biogeographic relationships within Brachylophus, we generated an mtDNA dataset consisting of 1462 base pairs for 61 individuals from 13 islands, representing both Brachylophus species. Unweighted parsimony analyses and Bayesian analyses produced a well-resolved phylogenetic hypothesis supported by high bootstrap values and posterior probabilities within Brachylophus. Our data reject the monophyly of specimens previously believed to comprise B. fasciatus. Instead, our data demonstrate that living Brachylophus comprise three robust and well-supported clades that do not correspond to current taxonomy. One of these clades comprises B. fasciatus from the Lau group of Fiji and Tonga (type locality for B. fasciatus), while a second comprises putative B. fasciatus from the central regions of Fiji, which we refer to here as B. n. sp. Animals in this clade form the sister group to B. vitiensis rather than other B. fasciatus. We herein describe this clade as a new species of Brachylophus based on molecular and morphological data. With only one exception, every island is home to one or more unique haplotypes. We discuss alternative biogeographic hypotheses to explain their distribution in the Pacific and the difficulties of distinguishing these. Together, our molecular and taxonomic results have important implications for future conservation initiatives for the Pacific iguanas. ?? 2008 The Royal Society.

Philosophical Transactions of the Royal Society B:↗

Comparative phytosociological investigation of subalpine alder thickets in southwestern Alaska and the North Pacific

We present the first vegetation analysis of subalpine alder (Alnus viridis) thickets in southwestern Alaska. The data are primarily from mesic, hilly and mountainous sites ranging from the westernmost tip of the Alaska Peninsula to the northern Kenai Peninsula, spanning 1,000 km on an E–W gradient and 700 km on a N–S gradient. 127 relevés from 18 sites represent the range of structural and compositional variation in the matrix of vegetation and landform diversity. Data were analyzed by multivariate and traditional Braun-Blanquet methods. One association is distinguished, Sambuco racemosi-Alnetum viridis ass. nov. with three new subassociations, oplopanacetosum horridi, typicum, and rubetosum spectabilis with the latter subdivided into four variants. These phytocoena are well-differentiated, although they form a syntaxonomical continuum. The composition and structure of these communities are described and interpreted in relation to complex environmental factors; these are analyzed using Jancey's ranking on F-values. Community composition is primarily related to elevation, longitude, soil moisture, and latitude. Phytogeographic comparison of southwestern Alaska alder communities with those elsewhere in the North Pacific suggests a close floristic relationship to those of southcentral, southeastern Alaska and coastal British Columbia, Canada. All these communities belong to the same association, while those of the eastern and southern parts of the Kamchatka Peninsula, Russia belong to a different association. Syntaxonomy of the 4 major communities is discussed. Within the Northern Hemisphere, vascular plant species of southwestern Alaska alder thickets primarily occur in East Asia and North America, 36 %; while 26 % are circumpolar, and 22 % are restricted to North America. From a latitudinal perspective, the distribution of vascular plant species within these alder thickets peaks in the high-subarctic, low-subarctic, and temperate latitudinal zones, with low representation of arctic species.

Alaska↗

Continuous water-quality and suspended-sediment transport monitoring in San Francisco Bay, California, water years 2020–21

The U.S. Geological Survey (USGS) has continuously monitored real-time water quality and suspended-sediment transport in San Francisco Bay (the Bay) since 1989 as part of a multi-agency effort (see “Acknowledgments” section) to address estuary management, water supply, and ecological concerns. The San Francisco Bay area is home to millions of people and biologically diverse marine and terrestrial flora and fauna. Freshwater mixes with saltwater in the Bay and is subject to riverine influences (floods, droughts, managed reservoir releases, and freshwater diversions) and marine influences (tides, waves, and effects of saltwater). Water temperature, salinity, suspended-sediment concentration (SSC), and turbidity, are used by State and Federal resources managers and are monitored at eight key locations throughout the Bay (fig. 1). Water temperature and salinity affect the density of water, which controls gravity-driven circulation patterns and stratification in the water column. Salinity indicates the relative mixing of fresh and ocean waters in the Bay and is derived from specific conductance measurements. Turbidity is a measure of light scattered from suspended particles in the water that is used to estimate suspended-sediment concentration. Suspended-sediment concentrations also are directly measured through depth-integrated water sampling. Suspended sediment affects Bay water quality in multiple ways. Suspended sediment affects phytoplankton growth by attenuating sunlight in the water column. Suspended sediment deposition on tidal marshes and intertidal mudflats helps to restore and sustain these habitats as sea level rises. Settling of suspended sediment in ports and shipping channels creates the need for more dredging. In addition, suspended sediment often carries adsorbed contaminants as it is transported in the water column, which affects the distributions and concentrations of adsorbed contaminants in the environment. Excessive concentrations of sediment-adsorbed contaminants in deposits on the bottom of the Bay can affect ecosystem health. External factors, such as tidal currents, waves, and wind can also affect water quality in the Bay. Tidal currents in the Bay change direction four times daily, and wind direction and intensity typically fluctuate on a daily cycle. Consequently, salinity, water temperature, and suspended-sediment concentration differ spatially and temporally throughout the Bay. Therefore, high-frequency measurements at multiple locations are needed to monitor these changes. Data collected at eight stations throughout the Bay are transmitted in near real-time using cellular telemetry and posted to the USGS National Water Information System (NWIS; https://waterdata.usgs.gov/usa/nwis ). The purposes of this fact sheet are to (1) provide information about the USGS San Francisco Bay water-quality monitoring network; (2) highlight various applications in which these data can be used; and (3) provide internet links to access the resulting continuous water-quality data collected by the USGS.

California↗

Field-based evaluations of sampling techniques to support long-term monitoring of riparian ecosystems along wadeable streams on the Colorado Plateau

To better plan for and implement long-term ecological monitoring, we measured riparian vegetation and fluvial geomorphic features at pilot study sites on four wadeable perennial stream reaches, representative of drainages across the Colorado Plateau. Our primary objectives were to (1) collect field data, (2) evaluate the efficiency and effectiveness of various ecological measures and measurement techniques for riparian ecosystems, and (3) use field-based sampling to inform and refine the development of standard operating procedures for use in implementing integrated, long-term monitoring of riparian ecosystems. Ultimately, this work was aimed at providing NPS staff with some of the information and methods needed to design and implement long-term monitoring of NPS riparian resources, which is both relevant to management, and fully operational within institutional resource constraints. Our results suggest that selecting sampling reaches and establishing a sampling frame of 11 transects, across a range of stream types, is feasible given a limited set of decision rules. A distinctive feature of richness across all sites was the high percentage of rare species, defined here as species having a single occurrence at a site. Rare species represented from 33 percent to 47 percent of the species total across the four pilot sites. Our data show that the two smallest quadrat sizes, 0.01 m 2 and 0.1 m 2 , rarely had any species that occurred in the desired frequency range and can be omitted from the monitoring protocol. Few species fell within the 30&ndash;70 percent range in the 1-m 2 quadrats, but this quadrat size appears to be useful at the Tsaile Creek (CACH) site. We recommend continuing to collect information at the 1-m 2 scale and reevaluating its usefulness after more data are available from different types of sites. The 10-m 2 quadrat is adequate for monitoring changes in frequencies of very common species at all sites. Based on pilot study results, we conclude that at sites with low total species numbers (< 60 species), 40&ndash;60, 10-m 2 quadrats, would be sufficient to characterize overall species diversity for relatively common species. At sites with higher total numbers of species (> 100), 60&ndash;80, 10-m 2 quadrats would be required to characterize overall species diversity. Rare species of interest should be monitored using alternative approaches, such as a site inventory and/or mapping (see Elzinga and others, 1998). A large number of the systematically placed 10-m 2 quadrats span two or more geomorphic surfaces, especially adjacent to the channel. This makes resolution of species affinities with distinct geomorphic landforms difficult. Thus, we provide an amendment to improve characterization of herbaceous and shrub species on narrow, near-channel surfaces by sampling additional 0.5-m by 1-m quadrats on those surfaces. It appears that for sites in narrow valley settings where riparian zones average less than approximately 40 m, the number of 10-m 2 quadrats systematically placed on 11 transects will not provide shrub cover estimates at 20 percent precision. In such cases, additional sample reaches should be added in order to attain a minimum of 130 to 140 10-m 2 shrub quadrats. The line-intercept technique can provide a relatively rapid, reach-scale quantification of proportional cover for woody vegetation and geomorphic surface types and that variance in these measures stabilizes by the eighth or ninth transect sampled. An overlay of the distribution of geomorphic surface data derived from line-intercept sampling on topographic survey information indicates that delineation of geomorphic surfaces could be done in conjunction with the topographic survey of each transect, obviating the need to record surface breaks using the line intercept. To include geomorphic surface identifications with the topographic survey, surface breaks and transitional surfaces should be included and identified in the survey, in addition to systematically placed survey points. Compared to 5-m by 20-m tree quadrats, belt transects were shown to provide similar estimates of stand structure (stem density and stand basal area) in less than 30 percent of the time. Further, for the streams sampled, there were no statistically significant differences in stem density and basal area estimates between 10-m and 20-m belt transects and the smaller belts took approximately half the time to sample. There was, however, high variance associated with estimates of stand structure for infrequently occurring stems, such as large, relict or legacy riparian trees. Legacy riparian trees occurred in limited numbers at all sites sampled. A reachscale population census of these trees indicated that the 10-m belt transects tended to underestimate both stem density and basal area for these riparian forest elements and that a complete reach-scale census of legacy trees averaged less than one hour per site.

Colorado Plateau↗

The paradox of nonmarine ichnofaunas in tidal rhythmites; integrating sedimentologic and ichnologic data from the Late Cretaceous of eastern Kansas, USA

The occurrence of trace fossil assemblages dominated by arthropod trackways and surface grazing trails within Carboniferous tidal rhythmites has puzzled sedimentologists and ichnologists, who interpreted them either as marine or nonmarine. The Virgilian (Stephanian) Tonganoxie Sandstone Member (Stranger Formation) at Buildex Quarry (eastern Kansas) consists, for the most part, of planar-laminated coarse-grained siltstones deposited on an upper tidal flat, close to or at the fluvial-estuarine transition of a macrotidal estuarine paleovalley. Recurrent thickness fluctuations demonstrate the strong influence of tidal processes and provide evidence that these deposits are tidal rhythmites, with thicker strata representing spring tides and thinner ones recording neap tides. The Buildex sequence hosts a moderately diverse ichnofauna composed of arthropod trackways (Dendroidichnites irregulare, Diplichnites gouldi, Diplopodichnus bifurcus, Kouphichnium isp., Mirandaichnium famatinense, Stiallia pilosa, Stiaria intermedia), grazing traces (Gordia indianaensis, Helminthoidichnites tenuis, Helminthopsis hieroglyphica), subsurface feeding traces (Treptichnus bifurcus, T. pollardi, irregular networks), apterygote insect resting and feeding traces (Tonganoxichnus buildexensis, T. ottawensis), fish traces (Undichna britannica, U. simplicitas), and tetrapod trackways. In contrast to trace fossil assemblages from brackish-water estuarine settings, the Buildex ichnofauna is characterized by moderate to relatively high ichnodiversity, ichnotaxa commonly present in terrestrial/freshwater environments, dominance of surface trails and absence of burrows, dominance of temporary structures produced by a mobile deposit-feeder fauna, a mixture of traces belonging to the Scoyenia and Mermia ichnofacies, moderate density of individual ichnotaxa, and absence of monospecific suites. This ichnofauna is thought to record the activity of a typical freshwater/terrestrial benthos. The presence of this mixed freshwater/terrestrial ichnofauna in tidal rhythmites is regarded as indicative of tidal flats that were developed in the most proximal zone of the inner estuary under freshwater conditions, more precisely in a zone between the maximum limit of landward tidal currents and the salinity limit further towards the sea. Although lithofacies distribution in estuarine valleys is mainly salinity-independent, the distribution of benthos is not. Accordingly, ichnologic studies have the potential to provide a high-resolution delineation of fluvio-estuarine transitions.

Kansas↗

The USGS role in mapping the nation's submerged lands

The seabed provides habitat for a diverse marine life having commercial, recreational, and intrinsic value. The habitat value of the seabed is largely a function of the geological structure and related geological, biological, oceanologic, and geochemical processes. Of equal importance, the nation's submerged lands contain energy and mineral resources and are utilized for the siting of offshore infrastructure and waste disposal. Seabed character and processes influence the safety and viability of offshore operations. Seabed and subseabed characterization is a prerequisite for the assessment, protection, and utilization of both living and non-living marine resources. A comprehensive program to characterize and understand the nation's submerged lands requires scientific expertise in the fields of geology, biology, hydrography, and oceanography. The U.S. Geological Survey (USGS) has long experience as the Federal agency charged with conducting geologic research and mapping in both coastal and offshore regions. The USGS Coastal and Marine Geology Program (CMGP) leads the nation in expertise related to characterization of seabed and subseabed geology, geological processes, seabed dynamics, and (in collaboration with the National Oceanic and Atmospheric Administration (NOAA) and international partners) habitat geoscience. Numerous USGS studies show that sea-floor geology and processes determine the character and distribution of biological habitats, control coastal evolution, influence the coastal response to storm events and human alterations, and determine the occurrence and concentration of natural resources.

Fact Sheet↗

Natural attenuation of chlorinated volatile organic compounds in a freshwater tidal wetland, Aberdeen Proving Ground, Maryland

Ground-water contaminant plumes that are flowing toward or currently discharging to wetland areas present unique remediation problems because of the hydrologic connections between ground water and surface water and the sensitive habitats in wetlands. Because wetlands typically have a large diversity of microorganisms and redox conditions that could enhance biodegradation, they are ideal environments for natural attenuation of organic contaminants, which is a treatment method that would leave the ecosystem largely undisturbed and be cost effective. During 1992-97, the U.S. Geological Survey investigated the natural attenuation of chlorinated volatile organic compounds (VOC's) in a contaminant plume that discharges from a sand aquifer to a freshwater tidal wetland along the West Branch Canal Creek at Aberdeen Proving Ground, Maryland. Characterization of the hydrogeology and geochemistry along flowpaths in the wetland area and determination of the occurrence and rates of biodegradation and sorption show that natural attenuation could be a feasible remediation method for the contaminant plume that extends along the West Branch Canal Creek. The aquifer, which received contaminants in the past from sources that were located upgradient of the current eastern boundary of the wetland, is about 40 to 45 feet thick in the study area. The overlying wetland sediments consist of two distinct layers that have a combined thickness of about 6 to 12 feet--an upper unit of peat and a lower unit of silty to sandy clay or clayey sand. Head distributions show strong vertical gradients, and flow directions are predominantly upward through the wetland sediments. Tidal fluctuations, however, cause some reversals in ground-water-flow directions and changes in discharge locations, which affect the distribution and transport of contaminants. The average linear velocity of ground water is estimated to be about 2 to 3 feet per year along vertical flow lines in the wetland area, and the total ground-water discharge along a 1-foot-wide strip of the wetland extending from the eastern wetland boundary to the creek is in the range of 0.13 to 0.25 feet squared per day. The major parent contaminants in the aquifer were trichloroethylene (TCE); 1,1,2,2-tetrachloroethane (PCA); carbon tetrachloride (CT); and chloroform (CF). The aquifer was typically aerobic, but ground water in the wetland sediments became increasingly anaerobic along the upward flow direction. Iron-reducing conditions were predominant in the lower wetland sediment unit composed of clayey sand and silt, and methanogenesis was predominant in an upper unit composed of peat. Total concentrations of VOC's and the relative proportions of parent compounds to anaerobic daughter products changed substantially as the contaminants were transported upward through these changing redox environments. Concentrations of the parent compounds TCE and PCA ranged from about 100 to 2,000 micrograms per liter in the aquifer beneath the wetland, whereas concentrations of daughter products were low or undetectable. In contrast, the parent compounds commonly were not detected in ground water in the wetland sediments, but the daughter compounds 1,2- dichloro-ethylene (12DCE), vinyl chloride (VC), 1,1,2-trichloroethane (112TCA), and 1,2-dichloroethane (12DCA) were observed. 12DCE and VC were the dominant daughter products in the wetland sediments, even where PCA was the primary parent contaminant discharging to the wetland. The presence of these daughter products in water in the wetland sediments indicates that TCE and PCA are degraded by reductive dechlorination reactions in the naturally anaerobic wetland sediments. Although production of daughter products was observed, total concentrations of the VOC's decreased upward through the 6- to 12-feet-thick wetland sediments and were less than 5 micrograms per liter near the surface. The daughter products are apparently further degraded by these anaerobic processes to non-chlorinated, non-toxic endproducts, or are removed by other attenuation processes such as aerobic degradation or volatilization. Several sets of anaerobic microcosms, some amended with TCE concentrations of 400 or 990 micrograms per liter (3.0 or 7.5 micromoles per liter) and one amended with PCA concentration of 480 micrograms per liter (2.9 micromoles per liter), were constructed in the laboratory using wetland sediment and ground water from the study area. These microcosm experiments confirmed field observations that 12DCE and VC are the dominant daughter products from anaerobic biodegradation of both TCE and PCA. Production of 112TCA and 12DCA also was observed in the PCA-amended microcosms, but concentrations were lower than those of 12DCE and VC. These results indicate that degradation of PCA occurs through both hydrogenolysis and dichloroelimination pathways under anaerobic conditions. Daughter products were not observed in sterile controls, except for relatively low concentrations of 12DCE in the PCA-amended controls, suggesting that the reactions were predominantly microbially mediated. Parent and daughter concentrations in the microcosms decreased to less than 5 micrograms per liter in less than 34 days under methanogenic conditions, thus showing extremely rapid biodegradation rates in these organic-rich wetland sediments. Maximum potential rate constants for biodegradation of TCE and PCA, which were calculated from the microcosm exper-iments assuming first-order degradation rates, ranged from 0.10 to 0.31 per day under methanogenic conditions, corresponding to half-lives of 2 to 7 days. The rate constant for TCE biodegradation under sulfate-reducing conditions was 0.045 West Branch, Aberdeen Proving Ground, Maryland 3 per day (half-life of 15 days), which is lower than under methanogenic conditions. These estimated rate constants for the wetland sediments are two to three orders of magnitude higher than those reported in the literature for TCE biodegradation in microcosms constructed with sandy aquifer sediments. Aerobic biodegradation rates for cis-12DCE, trans-12DCE, and VC were in the same range as those measured for TCE and PCA under anaerobic conditions in microcosm experiments. Thus, production of these daughter products by anaerobic biodegradation of TCE and PCA could be balanced by their consumption where oxygen is available in the wetland sediment, such as near roots and land surface. In the aerobic microcosm experiments, biodegradation of cis-12DCE, trans-12DCE, and VC occurred only if methane consumption occurred, indicating that methanotrophs were involved in the process. Aerobic biodegradation was fastest for vinyl chloride and slowest for TCE in the microcosm experiments. These results agree with other laboratory and field studies that have shown faster degradation by methane-utilizing cultures when the compounds are less halogenated. Equilibrium sorption isotherms were measured in 24-hour batch tests and used to estimate distribution coefficients ( K d 's) to describe the ratios of sorbed to aqueous concentrations of PCA and the daughter products cis-12DCE, trans-12DCE, and VC. The estimated K d's for PCA, cis-12DCE, trans-12DCE, and VC were about 2.3, 1.8, 2.4, and 1.3 liters per kilogram of sediment, respectively. Sorbed concentrations of PCA, cis-12DCE, and trans-12DCE in the wetland sediments, therefore, would be expected to be about twice the concentration measured in the water, whereas sorbed concentrations of VC would not be much greater than the aqueous concentrations. Coefficients of retardation, which were calculated using the K d 's and an advective flow velocity of about 2 feet per year, indicate that sorption alone would cause the movement of the contaminants in the wetland sediments to be 6 to 10 times slower than the advective ground-water flow. Biodegradation and sorption, therefore, are significant natural attenuation mechanisms for chlorinated hydrocarbons in these wetland sediments. The relatively thin layers of wetland sediments are critical in reducing contaminant concentrations and toxicity of the ground water before it discharges to the wetland surface and the creek, and natural attenuation in the wetland sediments could be an effective remediation method for the ground-water contaminants.

Maryland↗

Kimmeridgian Shales Total Petroleum System of the North Sea Graben Province

The North Sea Graben of northwestern Europe, World Energy Project Province 4025, is entirely offshore within the territorial waters of Denmark, Germany, the Netherlands, Norway, and the United Kingdom. Extensional tectonics and failed rifting are fundamental to the distribution of oil and gas in the province. Accordingly, the geologic history and reser-voir rocks of the province are considered in the context of their temporal relationship to the principal extension and rifting events. The oil and gas accumulations of the province are considered part of a single petroleum system: the Kimmeridg-ian Shales Total Petroleum System (TPS). Source rocks of the Kimmeridgian Shales TPS were deposited in Late Jurassic to earliest Cretaceous time during the period of intensive exten-sion and rifting. The Kimmeridgian Shales contain typical 'type II' mixed kerogen. Oil and gas generation began locally in the North Sea Graben Province by Cretaceous time and has continued in various places ever since. Reservoirs are found in strata with ages ranging from Devonian to Eocene. Pre-rift reservoirs are found in fault-block structures activated during rifting and can be of any age prior to the Late Jurassic. Syn-rift reservoirs are restricted to strata actually deposited during maximum extension and include rocks of Late Jurassic to earliest Cretaceous age. Post-rift reservoirs formed after rifting and range in age from Early Cretaceous to Eocene. Seals are diverse, depending upon the structural setting and reservoir age. Pre-rift reservoirs com-monly have seals formed by fine-grained, post-rift sedimentary sequences that drape the Late Jurassic to earliest Cretaceous structures. Contemporaneous shales such as the Kimmeridge Clay seal many syn-rift reservoirs. Fields with post-rift res-ervoirs generally require seals in fine-grained Tertiary rocks. In most of the North Sea Graben, source rocks have been continuously buried since deposition. Structural trap forma-tion has also taken place continuously since Mesozoic time. As a result, oil and gas are present in a wide variety of settings within Province 4025. Assessment units for the World Energy Project were defined geographically in order to capture regional differ-ences in exploration history, geography, and geological evolution. Three geographic areas were assessed. The Viking Graben, in the northern part of the province, includes both United Kingdom and Norwegian territorial areas. The Moray Firth/Witch Ground in the west-central part of the province is entirely in United Kingdom. waters. The Central Graben in the southern part of the province includes territorial areas of Denmark, Germany, the Netherlands, Norway, and the United Kingdom. The North Sea Graben is estimated to contain between 4.3 and 25.6 billion barrels (BBO) of undiscovered, conventionally recoverable oil. Of that total, the Viking Graben is believed to contain 2.2 to 14.8 BBO of undiscov-ered oil, the Moray Firth/Witch Ground may contain between 0.3 and 1.9 BBO, and the Central Graben was estimated to contain undiscovered oil resources of 1.7 to 8.8 BBO. Prov-ince 4025 was also estimated to hold between 11.8 and 75 trillion cubic feet (TCF) of undiscovered natural gas. Of this total, 6.8 to 44.5 TCF is thought to exist in the Viking Graben, 0.6 to 3.4 TCF is estimated to be in the Moray Firth/Witch Ground, and 4.5 to 27.1 TCF of undiscovered gas is estimated to be in the Central Graben.

Bulletin↗

Benthic algae of benchmark streams in agricultural areas of eastern Wisconsin

Benthic algae were collected from 20 streams in the Western Lake Michigan Drainages by the U.S. Geological Survey in May and June of 1993 as part of the National Water-Quality Assessment program. These streams were selected to represent "benchmark" streams that were minimally affected by human activities, especially agriculture, for comparison to other streams in similar environmental settings. Streams were chosen from four relatively homogeneous units (RHU's) in agricultural areas with differing texture of surficial deposits and bedrock type. Blue-green algae were the dominant algal cells at all but 5 of the 20 stream sites, and the most abundant species at these sites was Calothrix parietina, a nitrogen-fixer typically found in pristine streams. Most of the taxa at all sites were diatoms. The dominant diatom guilds observed were the Achnanthes spp., erect forms, and Navicula spp. Except for three streams thought to have low productivity, the Shannon-Wiener diversity index for diatoms was high at all benchmark streams and indicated either minor stress or no stress on the diatom community. With regard to water quality, additional diatom indexes for 17 of 20 benchmark streams indicated no pollution effects and no significant siltation. All benchmark streams had good to excellent biological integrity and either minor or no impairment of aquatic life with regard to diatoms. A variety of algal metrics and relative abundances of diatom morphological guilds correlated with basin-, segment-and reach-level habitat characteristics, including drainage area, basin drainage density, basin soil permeability, Q/Q2 (instantaneous discharge measured at time of sampling divided by the estimated 2-year flood discharge), stream length, and average width of natural riparian vegetation. Algal taxa richness decreased with higher percentages of agricultural land and lower percentages of forested land. The relative abundance of pollution-tolerant diatoms was higher in streams where the basin land was primarily agricultural as compared to forested. The Shannon- Wiener diversity index for diatoms, the percentage of diatom taxa, and the percent relative abundances of diatom cells, pollution tolerant diatoms, Achnanthes spp., erect diatom forms, nitrogen-fixing algae, and blue-green algae differed significantly among either RHU's or ecoregions. Higher abundances of pollution-sensitive diatoms and a higher pollution index indicate that water quality in sampled streams in the North Central Hardwood Forests ecoregion may be less degraded than in streams in the Southeastern Wisconsin Till Plains ecoregion. Algal taxa richness decreased as specific conductance, dissolved nitrate plus nitrite, and suspended sediment increased. This relation may indicate a negative effect of agricultural activities on the algal taxa richness of the stream. Pollution-tolerant diatoms and the pollution index increased as these and additional factors correlated with agriculture increased. Multivariate analyses indicated multiple scales of environmental factors affect algae. Although two-way indicator species analysis (TWINSPAN), detrended correspondence analysis (DCA), and canonical correspondence analysis (CCA) generally separated sites according to RHU, only DCA ordination indicated a separation of sites according to ecoregion. Environmental variables con-elated with DCA axes 1 and 2 and therefore indicated as important explanatory factors for algal distribution and abundance were factors related to stream size, basin land use/cover, geomorphology, hydrogeology, and riparian disturbance. CCA analyses with a more limited set of environmental variables indicated that pH, average width of natural riparian vegetation (segment scale), basin land use/cover and Q/Q2 were the most important variables affecting the distribution and relative abundance of benthic algae at the 20 benchmark streams,

Wisconsin↗

The conundrum of taxonomic uniformitarianism in planktic foraminifera

Planktic foraminiferal species distributions in the modern ocean track environmental features like sea surface temperature (SST). Species shift their distributions as the marine environment changes, providing an analogue for past behaviour. Stationarity of species' ecological tolerances is therefore a first-order assumption of all palaeoenvironmental reconstructions based upon modern analogue methods. In this paper we test the hypothesis that planktic foraminifer species temperature preferences did not change between the Late Pliocene and present, using a dataset which contains faunal abundance data and alkenone palaeotemperature data from the same samples. Our dataset includes 463 samples from 29 localities. Pliocene relative abundances of four taxa ( Globigerina bulloides , Globigerinita glutinata , Neogloboquadrina pachyderma and Neogloboquadrina incompta ) are compared to SST estimates of the same age derived using the alkenone unsaturation ratio ( U K ' 37 ) palaeothermometer. Core-top abundances of the same taxa were compared to pre-industrial SST. Our Pliocene data are generally concordant with previous work. Pliocene SST responses and those of the pre-industrial are similar, supporting the hypothesis that temperature preferences of planktic foraminifera have been relatively stable since the Late Pliocene. This documentation of stationarity of planktic foraminiferal species' temperature tolerances is helpful in identifying situations where environmental variables other than temperature (e.g. salinity or productivity) exhibit a first-order control on faunal diversity. Our results support the notion of taxonomic uniformitarianism and therefore provide additional confidence in using planktic foraminifera to evaluate both regional and global climate change.

Palaeontology↗

Temporal and petrogenetic links between Mesoproterozoic alkaline and carbonatite magmas at Mountain Pass, California

Mountain Pass is the site of the most economically important rare earth element (REE) deposit in the United States. Mesoproterozoic alkaline intrusions are spatiotemporally associated with a composite carbonatite stock that hosts REE ore. Understanding the genesis of the alkaline and carbonatite magmas is an essential scientific goal for a society in which critical minerals are in high demand and will continue to be so for the foreseeable future. We present an ion microprobe study of zircon crystals in shonkinite and syenite intrusions to establish geochronological and geochemical constraints on the igneous underpinnings of the Mountain Pass REE deposit. Silicate whole-rock compositions occupy a broad spectrum (50–72 wt % SiO 2 ), are ultrapotassic (6–9 wt % K 2 O; K 2 O/Na 2 O = 2–9), and have highly elevated concentrations of REEs (La 500–1,100× chondritic). Zircon concordia 206 Pb/ 238 U- 207 Pb/ 235 U ages determined for shonkinite and syenite units are 1409 ± 8, 1409 ± 12, 1410 ± 8, and 1415 ± 6 Ma (2 σ ). Most shonkinite dikes are dominated by inherited Paleoproterozoic xenocrysts, but there are sparse primary zircons with 207 Pb/ 206 Pb ages of 1390–1380 ± 15 Ma for the youngest grains. Our new zircon U-Pb ages for shonkinite and syenite units overlap published monazite Th-Pb ages for the carbonatite orebody and a smaller carbonatite dike. Inherited zircons in shonkinite and syenite units are ubiquitous and have a multimodal distribution of 207 Pb/ 206 Pb ages that cluster in the range of 1785–1600 ± 10–30 Ma. Primary zircons have generally lower Hf (<11,000 ppm) and higher Eu/Eu* (>0.6), Th (>300 ppm), Th/U (>1), and Ti-in-zircon temperatures (>800°C) than inherited zircons. Oxygen isotope data reveals a large range in δ 18 O values for primary zircons, from mantle (5–5.5‰) to crustal and supracrustal (7–9‰). A couple of low- δ 18 O outliers (2‰) point to a component of shallow crust altered by meteoric water. The δ 18 O range of inherited zircons (5–10‰) overlaps that of the primary zircons. Our study supports a model in which alkaline and carbonatite magmatism occurred over tens of millions of years, repeatedly tapping a metasomatized mantle source, which endowed magmas with elevated REEs and other diagnostic components (e.g., F, Ba). Though this metasomatized mantle region existed for the duration of Mountain Pass magmatism, it probably did not predate magmatism by substantial geologic time (>100 m.y.), based on the similarity of 1500 Ma zircons with the dominantly 1800–1600 Ma inherited zircons, as opposed to the 1450–1350 Ma primary zircons. Mountain Pass magmas had diverse crustal inputs from assimilation of Paleoproterozoic and Mesoproterozoic igneous, metaigneous, and metasedimentary rocks. Crustal assimilation is only apparent from high spatial resolution zircon analyses and underscores the need for mineral-scale approaches in understanding the genesis of the Mountain Pass system.

California↗

Geology, ground-water hydrology, geochemistry, and ground-water simulation of the Beaumont and Banning Storage Units, San Gorgonio Pass area, Riverside County, California

Ground water has been the only source of potable water supply for residential, industrial, and agricultural users in the Beaumont and Banning storage units of the San Gorgonio Pass area, Riverside County, California. Ground-water levels in the Beaumont area have declined as much as 100 feet between the early 1920s and early 2000s, and numerous natural springs have stopped flowing. In 1961, the San Gorgonio Pass Water Agency (SGPWA) entered into a contract with the California State Department of Water Resources to receive 17,300 acre-feet per year of water to be delivered by the California State Water Project (SWP) to supplement natural recharge. Currently (2005), a pipeline is delivering SWP water into the area, and the SGPWA is artificially recharging the ground-water system using recharge ponds located along Little San Gorgonio Creek in Cherry Valley with the SWP water. In addition to artificial recharge, SGPWA is considering the direct delivery of SWP water for the irrigation of local golf courses and for agricultural supply in lieu of ground-water pumpage. To better understand the potential hydrologic effects of different water-management alternatives on ground-water levels and movement in the Beaumont and Banning storage units, existing geohydrologic and geochemical data were compiled, new data from a basin-wide ground-water level and water-quality monitoring network were collected, monitoring wells were installed near the Little San Gorgonio Creek recharge ponds, geohydrologic and geochemical analyses were completed, and a ground-water flow simulation model was developed. The San Gorgonio Pass area was divided into several storage units on the basis of mapped or inferred faults. This study addresses primarily the Beaumont and Banning storage units. The geologic units in the study area were generalized into crystalline basement rocks and sedimentary deposits. The younger sedimentary deposits and the surficial deposits are the main water-bearing deposits in the San Gorgonio Pass area. The water-bearing deposits were divided into three aquifers: (1) the perched aquifer, (2) the upper aquifer, and (3) the lower aquifer based on lithologic and downhole geophysical logs. Natural recharge in the San Gorgonio Pass area was estimated using INFILv3, a deterministic distributed- parameter precipitation-runoff model. The INFILv3 model simulated that the potential recharge of precipitation and runoff in the Beaumont and Banning storage units was about 3,710 acre-feet per year and that the potential recharge in 28 sub-drainage basins upstream of the storage units was about 6,180 acre-feet per year. The water supply for the Beaumont and Banning storage units is supplied by pumping ground water from wells in the Canyon (Edgar and Banning Canyons), Banning Bench, Beaumont, and Banning storage units. Total annual pumpage from the Beaumont and Banning storage units ranged from about 1,630 acre-feet in 1936 to about 20,000 acre-feet in 2003. Ground-water levels declined by as much as 100 feet in the Beaumont storage unit from 1926-2003 in response to ground-water pumping of about 450,160 acre-feet during this period. Since ground-water development began in the San Gorgonio Pass area, there have been several sources of artificial recharge to the basin including return flow from applied water on crops, golf courses, and landscape; septic-tank seepage; and infiltration of storm runoff diversions and imported water into recharge ponds. Return flow from applied water and septic-tank seepage was estimated to reach a maximum of about 8,100 acre-feet per year in 2003. Owing to the great depth of water in much of study area (in excess of 150 feet), the return flow and septic-tank seepage takes years to decades to reach the water table. Stable-isotope data indicate that the source of ground-water recharge was precipitation from storms passing through the San Gorgonio Pass as opposed to runoff from the higher altitudes of the San Bernar

Scientific Investigations Report↗

Quantifying canal leakage rates using a mass-balance approach and heat-based hydraulic conductivity estimates in selected irrigation canals, western Nebraska, 2007 through 2009

The water supply in areas of the North Platte River Basin in the Nebraska Panhandle has been designated as fully appropriated or overappropriated by the Nebraska Department of Natural Resources (NDNR). Enacted legislation (Legislative Bill 962) requires the North Platte Natural Resources District (NPNRD) and the NDNR to develop an Integrated Management Plan (IMP) to balance groundwater and surface-water supply and demand in the NPNRD. A clear understanding of the groundwater and surface-water systems is critical for the development of a successful IMP. The primary source of groundwater recharge in parts of the NPNRD is from irrigation canal leakage. Because canal leakage constitutes a large part of the hydrologic budget, spatially distributing canal leakage to the groundwater system is important to any management strategy. Surface geophysical data collected along selected reaches of irrigation canals has allowed for the spatial distribution of leakage on a relative basis; however, the actual magnitude of leakage remains poorly defined. To address this need, the U.S. Geological Survey, in cooperation with the NPNRD, established streamflow-gaging stations at upstream and downstream ends from two selected canal reaches to allow a mass-balance approach to be used to calculate daily leakage rates. Water-level and sediment temperature data were collected and simulated at three temperature monitoring sites to allow the use of heat as a tracer to estimate the hydraulic conductivity of canal bed sediment. Canal-leakage rates were estimated by applying Darcy's Law to modeled vertical hydraulic conductivity and either the estimated or measured hydraulic gradient. This approach will improve the understanding of the spatial and temporal variability of canal leakage in varying geologic settings identified in capacitively coupled resistivity surveys. The high-leakage potential study reach of the Tri-State Canal had two streamflow-gaging stations and two temperature monitoring sites along its length. Calculated leakage rates from the mass-balance approach varied from year to year and were generally dependent on local climatic conditions, and the timing and magnitude of the initial seasonal diversion into the Tri-State Canal. Leakage rates ranged from 0.98 meter per day (m/d) on June 22, 2007, to about to 0 m/d during July 2009. Drier conditions generally resulted in higher leakage rates because of reduced flow from Spottedtail Creek, lower groundwater levels near Spottedtail Creek, and no unmeasured flow entering the reach. Of the three years studied (2007-09), 2007 was the driest, and therefore had the highest canal leakage rates. The moderately low leakage potential study reach of Interstate Canal had two streamflow-gaging stations and one temperature monitoring site along its length. Excluding the leakage calculations from early May 2007, leakage rates ranged from 0.08 to 0.7 m/d. Less variability in leakage from year to year indicates that climatic conditions may have less of an effect for Interstate Canal compared to Tri-State Canal. This may be because Interstate Canal was cut into the northern edge of the North Platte alluvial valley and consequently the canal bed is well above the local groundwater table resulting in a constant (1 meter per meter [m/m]) hydraulic gradient. Interstate Canal also does not receive any captured flow that can vary substantially year to year. Two temperature monitoring sites were installed within the high-leakage potential reach of Tri-State Canal. Site TCTEMP1 was established in 2007 where the water table was well below the canal bed surface. The vertical hydraulic conductivity of the poorly sorted sand and gravel beneath site TCTEMP1 was estimated using a calibrated one-dimensional VS2DH model. Using a trial-and-error approach, the best-fit vertical hydraulic conductivity for the site TCTEMP1 model domain was 1.1 m/d. Site TCTEMP2 was established at the mouth of Spottedtail Creek where a shallow

Scientific Investigations Report↗

Activities and preliminary results of nearshore benthic habitat mapping in southern California, 1998

The nearshore benthic habitat of the Santa Barbara coast and Channel Islands supports a diversity of marine life that are commercially, recreationally, and intrinsically valuable. Some of these resources are known to be endangered including a variety of rockfish and the White Abalone. State and National agencies have been mandated to preserve and enhance these resources and require detailed habitat characterization in order to do so. This project will characterize and map the benthic habitat in areas that have been selected because they have been set aside as National Sanctuaries or State Preserves, or are areas of ongoing or planned fish population studies. Various management strategies are being developed to protect marine resources in the Santa Barbara Channel Islands Region. One approach under investigation is to implement no-take marine reserves (Agardy, T., 1997; Bohnsack, 1998; Roberts, 1997). One small reserve presently exists on Anacapa Island and there is a growing momentum to add additional reserves to form a reserve network (Lafferty et al., 2000). Reserves may provide relatively pristine marine communities in a wild state for study and appreciation. In addition, they may buffer some species from over-fishing. A key feature of marine reserve design is to protect a representation of the existing habitats in a region (Roberts, 1997). Unfortunately, the distribution of habitats is not well known in this area since the underwater equivalent of soils and vegetation maps that are widely available for terrestrial systems do not yet exist. Managers need habitat maps to help determine the most appropriate boundaries for reserves in a network in order to meet various criteria and goals (such as habitat representation, reserve size, habitat heterogeneity, reserve spacing, inclusion of sensitive habitats, etc.). Another use for habitat mapping is to better understand the distribution of those habitats that are particularly important to fished species or sensitive species. Combining habitat mapping with ongoing studies of egg and larval fish counts by the National Marine Fisheries Service (Russell Vetter), rockfish population studies by the California Department of Fish and Game (Dave VenTresca), and white abalone (Kevin Lafferty and others, USGS) will extend the ability to predict the distribution of these species and identify areas with appropriate habitat that might be suitable for restoration. Additional uses for habitat mapping include managing visitor use, kelp distribution, and archeological resources.

California↗

Seasonal selection of riverine habitat by Spotted Bass and Shorthead Redhorse in a regulated river in the Midwestern U.S.

Riverine fish populations depend on habitats supporting their resource and life history needs. Dynamic streamflow caused by river regulation or natural events influences the distribution of downstream habitat characteristics. Through studying habitat selection, we can identify the most utilized and valuable habitats for the success of native fishes. We determined seasonal habitat selection of two common, native fish species on the Osage River downstream of Bagnell Dam, a hydroelectric dam in central Missouri, from April 2016 to June 2017 using radio telemetry. Spotted Bass ( Micropterus punctulatus ) are nest-guarders, sight feeders, and habitat generalists, whereas Shorthead Redhorse ( Moxostoma macrolepidotum ) are fluvial dependent, migratory, and benthic feeders. Bayesian discrete choice analyses determined that both species selected particular water depth, velocity, and presence of submerged cover in some or all seasons, even as available habitat changed. Spotted Bass selected water depths <4.0 m near submerged cover during all seasons, low velocity during spring and summer, and near-bank habitat in all seasons except spring. Shorthead Redhorse used fast flowing habitat during spring, 0.4–1.1 m/s velocity during summer, and low velocity in fall and winter (0.1–0.5 m/s). Shorthead Redhorse used submerged cover in all seasons except summer and selected specific ranges of depth within spring (2.4–4.4 m), summer (3.3–6.7 m), and winter (1.1–2.3 m). Our findings suggest that maintaining habitats with cover and diverse water depths and velocities, particularly both low and high velocity habitats during spring, may promote resilience by providing beneficial habitats for native fishes.

Missouri↗

Reduced quality and synchronous collapse of forage species disrupts trophic transfer during a prolonged marine heatwave

The Gulf of Alaska forage fish community includes a few key species that differ markedly in their timing of spawning, somatic growth and lipid storage, and in their migration behavior. This diversity in life history strategies facilitates resilience in marine food webs because it buffers predators against the naturally high variance in abundance of pelagic forage fish populations by decreasing the likelihood that all species will be scarce at the same time. During the prolonged North Pacific marine heatwave of 2014-2016, the availability and quality of at least three key forage species with different life history strategies were reduced simultaneously in the system. Capelin and sand lance occurrence in predator diets declined abruptly, and Prince William Sound herring spawning biomass declined to historically low levels. Biomass of euphausiids was also reduced, in part due to the loss of a cold-water species. Changes in age structure, growth, and energy content of capelin, sand lance, and herring were also associated with warming during the heatwave, but not all species responded in the same way. For example, spawning capelin grew faster and matured at a younger age but were shorter in length than usual, while sand lance in Prince William Sound experienced anomalously low growth rates and lipid storage in 2015-2016. Changes in forage fish populations had immediate impacts on predator populations in 2015-2016, when seabirds and marine mammals experienced shifts in distribution, mass mortality, and reproductive failures in the Gulf of Alaska. In contrast, copepod abundance increased on the shelf and in some coastal regions during the heatwave, suggesting that food availability was not a primary factor limiting forage fish populations at this time. The reduced quality and collapse of multiple forage fish populations reduced the efficiency of energy transfer through the middle trophic level of pelagic food webs, disrupting energy flow to piscivorous pelagic predators and causing abrupt and extreme reductions in their numbers and productivity.

Alaska↗

Ecosystems

The Fifth National Climate Assessment updates the evidence regarding how climate change influences ecosystems, biological diversity, and the implications for changes to critical ecosystem services—as noted in the key messages above (McElwee et al., 2023). Large-scale transformational changes to ecosystems are occurring, including—but not limited to—land-use conversion, hydrological alteration, and fire regimes. Implications of such transformational change include ecosystem capacity to maintain biological diversity and ecosystem services, impacting recreational opportunities (e.g., hunting and fishing, birding, ecotourism) and agriculture production (McElwee et al., 2023). A central tenet of the Fifth National Climate Assessment regarding ecosystems was the shifts to alternative states and how the Resist-Accept-Direct (RAD) framework may guide the adaptive management of ecosystems moving forward (Lynch et al., 2022). Nebraska is in the northern Great Plains, where extremes in climate and resulting ecosystem processes are experienced (Knapp et al., 2023). Pressures on ecosystems to provide essential services, including healthy soil and water to benefit humans and animals, will inevitably impact economic development, urban and rural communities, and fish and wildlife populations as climate change continues (Knapp et al., 2023). All ecosystems will be impacted in Nebraska, but aquatic systems—wetlands, aquifers, lakes, streams, and rivers—may be most impacted, given the scarcity of water as human demand (i.e., agriculture and a growing population) persists and increases (Bathke et al., 2014). Major knowledge gaps remain regarding how fish and wildlife populations will persist in changing environments. Past changes, including large-scale land conversion, water delivery systems, and water storage (construction of reservoirs), suggest that some species can adapt to novel environments and shift distributions. However, many more species may be maladapted to the expected changes in climate. Species may be unable to move to suitable habitats, and biological constraints under rapidly changing conditions may impede adaptation— resulting in extirpation and potential extinction. Further, changing conditions open multiple pathways for invasive species and novel diseases, impacting native fish populations, wildlife populations, and human health.

Nebraska↗

Integrating limnological characteristics of high mountain lakes into the landscape of a natural area

A general conceptual watershed-lake model of the complex interactions among climatic conditions, watershed location and characteristics, lake morphology, and fish predation was used to evaluate limnological characteristics of high mountain lakes. Our main hypothesis was that decreasing elevation in mountainous terrain corresponds to an increase in diversity of watershed size and lake area, depth, temperature, nutrient concentrations, and productivity. A second hypothesis was that watershed location and aspect relative to climatic gradients within mountainous terrain influences the limnological characteristics of the lakes. We evaluated these hypotheses by examining watershed location, aspect and size; lake morphology; water quality; and phytoplankton and zooplankton community characteristics among high mountain forest and subalpine lakes in Mount Rainier National Park. Although many of the comparisons between all forest and subalpine lakes were statistically insignificant, the results revealed trends that were consistent with our hypotheses. The forest lake group included more lakes with larger watersheds, larger surface areas, greater depths, higher concentrations of nutrients, and higher algal biovolumes than did the group of subalpine lakes. Deep lakes, which were mostly of the forest lake type, exhibited thermal stratification and relatively high values of some of the water-quality variables near the lake bottoms. However, the highest near-surface water temperatures and phytoplankton densities and the taxonomic structures of the phytoplankton and zooplankton assemblages were more closely related to geographical location, which corresponded to a west-east climate gradient in the park, than to lake type. Some crustacean and rotifer taxa, however, were limited in distribution by lake type. Fish predation did not appear to play an important role in the structure of the crustacean zooplankton communities at the genus level with the exception of Mowich Lake, where crustacean taxa were absent from the zooplankton community. This was the only lake inhabited by a true zooplanktivourous species of fish.

Environmental Management↗