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Wind River subbasin restoration: Annual report of US..Geological Survey activities, January 2018 through December 2018

We sampled juvenile wild Steelhead Oncorhynchus mykiss in headwater streams of the Wind River, WA, to characterize populations and investigate life-history metrics, particularly migratory patterns. We used Passive Integrated Transponder (PIT)-tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead have been planted in the Wind River subbasin since 1997, and hatchery adults are estimated to be less than one percent of spawners in most years (pers comm. Thomas Buehrens, Washington Department of Fish and Wildlife). Our repeated headwater sampling of consistent sites in the Wind River subbasin has also allowed us to track relative abundance of Brook Trout, a non-native species to the Wind River. Our work is contributing to understanding of Steelhead population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, where our PTISs are helping to quantify adult response. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to Bonneville Power Administration’s (BPA) Research Monitoring and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (www.cbfish.org/ProgramStrategy.mvc/ViewProgramStrategySummary/1). Specifically this work addresses the sub-strategies of: 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and to Uncertainties Research regarding differing life histories of a wild Steelhead population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. Our headwaters parr PIT tagging, WDFW parr, smolt, and adult tagging and our instream PTISs are providing data on movements and life histories of parr, smolt, and adult Steelhead. During summer 2018, we PIT-tagged 1,592 age-0 and age-1 Steelhead parr in headwater areas of the Wind River subbasin to characterize population traits and investigate life-history diversity, including growth and pre-smolt downstream movement. Repeat headwater sampling and smolt trap operations provide opportunities for recapture, and instream PTISs and Columbia River infrastructure provide opportunity for detection of PIT-tagged fish. Throughout the year, we maintained a series of six instream PTISs to monitor movement of tagged Steelhead parr, smolts, and adults. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. Substantial numbers of parr make downstream movements as age-1 fish. We have estimated that from 15 to 33 percent of parr tagged as age-0 fish make downstream migrations at age-1 for additional rearing. We have estimated that from 1 to 27 percent of parr tagged as age-1 fish make downstream migrations during fall. These findings raise many questions about parr rearing strategies, habitat use, and success of these migrants and suggest a need for broader monitoring of juvenile Steelhead in some river systems to fully document juvenile production. Long-term monitoring of PIT-tagged fish is providing information on contribution of various life-history strategies to smolt production and adult returns. Movements of PIT-tagged adult Steelhead were recorded at instream PTISs. These data have allowed assessment of adult returns to tributary watersheds within the Wind River subbasin. Detection efficiency of adult PIT-tagged Steelhead at our primary adult-monitoring PTIS in Trout Creek has been greater than 92 percent during 6 of the past 7 years. This is providing excellent data to estimate adult returns to this watershed. Determination of adult use of tributary watersheds is providing data to help evaluate the efficacy of the removal of Hemlock Dam on Trout Creek. Hemlock Dam, located at rkm 2.0 of Trout Creek, was removed in summer 2009. The dam contributed to hydrologic impairment of Trout Creek and had potential negative effects on Steelhead. The improvements made to the upper Wind River PTIS (site code WRU at rkm 28.3; better site characteristics and grid power) during 2016 and 2017, and a planned new site in the Mine Reach of the upper Wind River, will allow estimates of subbasin adult escapement like those in Trout Creek. During 2018, we also completed planning and permitting with U.S. Forest Service for a new PTIS site at rkm 36 of the Wind River (the Mine Reach, mentioned above). This site will replace two sites (one in Paradise Creek and one at rkm 41 of the Wind River), which had operational challenges due to lack of adequate solar power and winter difficulties. The new Mine Reach PTIS site at rkm 36, will have better solar exposure, fewer winter operations difficulties, and provide opportunity to detect fish from juvenile sampling sites that were downstream of the previous two PTISs. The more consistent operation of the new Mine Reach PTIS site will increase our ability to estimate migrant abundance as all the juveniles tagged upstream of it will be subject to the same potential detection history, instead of three different potential detection histories as before. Additionally, with the new Mine Reach PTIS site lower in the watershed, it will subject more PIT-tagged adult Steelhead to detection and provide ability to generate a nonbiased adult-detection efficiency estimate for the WRU PTIS at rkm 28.3 of the Wind River. This will provide the opportunity to estimate yearly adult Steelhead abundance to the upper Wind watershed area. Permitting is complete and some supplies have been purchased to build and install this new site in 2019. Repeat sampling at consistent locations in the subbasin has allowed investigation into juvenile Steelhead growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer are similar across the subbasin, but lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly growth for parr tagged at age-0 is similar across the subbasin. Yearly growth for parr tagged at age-1 is lowest in Martha Creek, but similar elsewhere. Non-native Brook Trout are present in portions of the subbasin, chiefly the Trout Creek watershed, and repeat sampling has allowed us to index their prevalence. Percentage of catch that is Brook Trout at each of four sample sites in Trout Creek have declined from the period 1998 – 2003 to the period 2011 – 2018. There was a pattern of decline in percent of catch and number of Brook Trout at the Trout Creek sites from 2011 through 2016, though a slight upward trend during 2017 and 2018 has been evident. Evaluating and planning restoration efforts are of interest to many managers and agencies to ensure efficient use of resources. The evaluation of various life-histories of Steelhead within the Wind River subbasin will provide information to better track populations, and to direct habitat restoration and water allocation planning. Movement of Steelhead parr raises many questions regarding estimating juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT tagging of age-0 and age-1 Steelhead parr are increasingly allowing us to investigate such questions. Increasingly detailed Viable Salmonid Population information, such as that provided by PIT-tagging and instream PTISs networks like those in the Wind River subbasin, provide data to inform policy and management, as life-history strategies and production bottlenecks are identified and understood.

Washington↗

Broadscale distribution, abundance and habitat associations of the invasive Asian clam (Corbicula fluminea) in the lower Columbia River, USA

The Asian clam, Corbicula fluminea , is an invasive freshwater bivalve that has established populations across the globe and is known to have deleterious effects on natural and human systems. Yet, despite being present in the Columbia River (CR) for nearly a century, little is known about this invader's basic biology and ecology in this large river system. Thus, we undertook a field study to assess its i) broadscale distribution and abundance, and ii) associations with habitat characteristics in the lower CR. During 2019-20, C. fluminea were collected from 27 shore-based stations spanning 481 river kilometers of the lower CR, along with several habitat characteristics (bank slope, temperature, dissolved oxygen, pH, salinity, conductivity, chlorophyll- a concentration, and sediment composition and % organic matter). C. fluminea abundance ranged from 0-430 ind. m -2 . Most sites with abundances >100 ind. m -2 were located downstream of Bonneville Dam, while most sites with abundances < 100 ind. m -2 were located upstream. Generalized linear models predicting the abundance of C. fluminea indicated significantly positive correlations with water temperature and % sand, and negative correlations with bank slope and sedimentary % organic matter. We also reviewed the global literature on abundance and habitat associations of C. fluminea and compared this with our own results. Our investigation represents the greatest spatial extent at which C. fluminea has been studied in the CR and our results provide a better understanding of the basic biology and ecology of this global invader, as well as provide natural resource managers with information on habitat conditions favorable for this invasive bivalve within temperate river ecosystems.

Oregon, Washington↗

Flood-tracking chart for the Chattahoochee River Basin in Metropolitan Atlanta, Georgia

The U.S. Geological Survey (USGS)—in cooperation with other Federal, State, and local agencies—operates a flood monitoring system in the Chattahoochee River Basin. This system is a network of 35 automated river stage stations that transmit stage data through satellite telemetry to the USGS Georgia Water Science Center in Atlanta. During floods, the public and emergency response agencies use this information to make decisions about road closures, evacuations, and other public safety issues. The emergency phone number for your area is listed under “Local flood emergency phone numbers.”

Georgia↗

Morphology and acoustic character of the Antarctic Wilkes Land turbidite systems: Ice-sheet-sourced versus river-sourced fans

The Wilkes Land continental slope contains an intricate network of submarine canyons that on the continental rise develop into a series of channel and overbank deposits of turbidite systems. We can define upper-fan, middle-fan, and lower-fan provinces. The Wilkes Land upper fans are characterized by large channels with relief up to 900 m, distances between levee crests up to 18 km, and channel-floor widths up to 6 km. Middle-fan channels also have high relief (∼300 m), and locally, interchannel areas exhibit mounded contourite-style deposits with high relief (up to 490 m). Within middle-fan sediment mounds there are acoustic facies of channel-overbank deposits from turbidity currents, and of sediment waves from contour-current sedimentation. The lower rise is characterized by small, shallow channels (50-75 m relief) and by interchannel areas of low relief, both characteristic of a lower-fan environment. The Wilkes Land turbidite systems show the following significant morphological differences compared to most river-sourced fans: (1) multiple large tributary channels across the upper and middle fan, (2) channel relief several times greater (900 m) than typical relief (100-200 m) for channels on fans less than 300 km in diameter, and (3) steep middle-fan and lower-fan gradients. We interpret the differences in channel network patterns, channel size, and middle-fan and lower-fan gradients between the Wilkes Land fans and other fans to result from the continental ice sheet feeding glacial ice streams that reached the outer continental shelf at times of glacial maxima. The Wilkes Land canyon-channel network patterns are comparable with the high-latitude Laurentian Fan and Labrador Sea channels. The Laurentian Fan also has large upper-fan channels with larger relief (800 m) than typical relief (200-300 m) expected for fans that are 600 km in diameter. Both the Labrador Sea and Laurentian Fan are fed by continental ice sheets at the shelf edge.

Journal of Sedimentary Research↗

Raft and floating radio frequency identification (RFID) antenna systems for detecting and estimating abundance of PIT-tagged fish in rivers

Portable radio frequency identification (RFID) PIT tag antenna systems are increasingly being used in studies examining aquatic animal movement, survival, and habitat use, and their design flexibility permits application in a wide variety of settings. We describe the construction, use, and performance of two portable floating RFID PIT tag antenna systems designed to detect fish that were unavailable for recapture using stationary antennas or electrofishing. A raft antenna system was designed to detect and locate PIT-tagged fish in relatively long (i.e., &ge;10 km) river reaches, and consisted of two antennas: (1) a horizontal antenna (4 &times; 1.2 m) installed on the bottom of the raft and used to detect fish in shallower river reaches (<1 m), and (2) a vertical antenna (2.7 &times; 1.2 m) for detecting fish in deeper pools (&ge;1 m). Detection distances of the horizontal antenna were between 0.7 and 1.0 m, and detection probability was 0.32 &plusmn; 0.02 (mean &plusmn; SE) in a field test using rocks marked with 32-mm PIT tags. Detection probability of PIT-tagged fish in the Cache la Poudre River, Colorado, using the raft antenna system, which covered 21% of the wetted area, was 0.14 &plusmn; 0.14. A shore-deployed floating antenna (14.6 &times; 0.6 m), which covered 100% of the wetted area, was designed for use by two operators for detecting and locating PIT-tagged fish in shorter (i.e., <2 km) river reaches. Detection distances of the shore-deployed floating antenna were between 0.7 and 0.8 m, and detection probabilities during field deployment in the St. Vrain River exceeded 0.52. The shore-deployed floating antenna was also used to estimate abundance of PIT-tagged fish. Results suggest that the shore-deployed floating antenna could be used as an alternative to estimating abundance using traditional sampling methods such as electrofishing.

Colorado↗

Quantifying production of salmon fry in an unscreened irrigation system: A case study on the Rangitata River, New Zealand

Diversion of out-migrant juvenile salmon into unscreened irrigation and hydroelectric canals is thought to have contributed significantly to declining populations of anadromous salmonids in the Pacific Northwest but is seldom studied in detail. Here we describe a program to study the fate of Chinook salmon Oncorhynchus tshawytscha fry diverted into the unscreened Rangitata Diversion Race (RDR) on the Rangitata River, New Zealand, by trapping fish in a random sample of on-farm canals in irrigation schemes (systems) served by the RDR. The catch rate at a site 9 km below the intake was strongly related to Rangitata River flow, but catches further downstream were unrelated to flow. Most fish entering the RDR were fry or early postfry (<70 mm fork length (FL)), but up to 92% of the fish trapped in on-farm canals were fingerlings (>70 mm FL), suggesting that many such fish became resident in the RDR for up to 3 months. Consequently, our estimate of the total number of fish leaving the RDR via on-farm canals (204,200 fish; 95% confidence limits = 127,100 and 326,700) is a conservative measure of the number lost from the Rangitata River because it does not allow for mortality within the RDR. We did not quantify the proportion of Rangitata River out-migrants that entered the RDR, but our results suggest that this figure was at least 5% and that it may have been as high as 25%, depending on mortality rates within the Rangitata River main stem and the RDR itself.

Rangitata River↗

Geophysical logs and water-quality data collected for boreholes Kimama-1A and -1B, and a Kimama water supply well near Kimama, southern Idaho

In September 2010, a research consortium led by scientists from Utah State University began drilling the first of three continuously cored boreholes on the Snake River Plain in southern Idaho. The goals of this effort, the Snake River Scientific Drilling Project, are to study the interaction between the Earth's crust and mantle, to identify potential geothermal energy sources, and to track the evolution of the Yellowstone hotspot on the Snake River Plain. The first borehole, located near Kimama, Idaho, is about 50 miles southwest of the U.S. Department of Energy's Idaho National Laboratory. Because geohydrologic data are scarce for that area of the central Snake River Plain, the Kimama borehole, completed in January 2011, provided a unique opportunity to collect geophysical and water-chemistry data from the eastern Snake River Plain aquifer system, downgradient of the laboratory. Therefore, in conjunction with the Snake River Scientific Drilling Project, scientists from the U.S. Geological Survey's Idaho National Laboratory Project Office conducted geophysical logging and collected water samples at the Kimama site. Wireline geophysical logs were collected for the diverging borehole, Kimama-1A and -1B, from land surface to 976 and 2,498 feet below land surface (BLS), respectively. Water samples were collected from Kimama-1A at depths near 460 and 830 feet BLS, and from the Kimama Water Supply (KWS) well located about 75 feet away. Geophysical log data included a composite of natural gamma, neutron, gamma-gamma dual density, and gyroscopic analysis for boreholes Kimama-1A and -1B. Geophysical logs depicted eight sediment layers (excluding surficial sediment) ranging from 4 to 60 feet in thickness. About 155 individual basalt flows were identified, ranging from less than 3 feet to more than 175 feet in thickness (averaging 15 feet) for borehole Kimama-1B (0 to 2,498 feet BLS). Sediment and basalt contacts were selected based on geophysical traces and were confirmed with visual inspection of core photographs. Temperature logs from the water table surface (about 260 feet BLS) to the bottom of borehole Kimama-1B (2,498 feet BLS) were nearly isothermal, ranging from about 62 to 64 degrees Fahrenheit. Gyroscopic data revealed that borehole Kimama-1B begins to separate from borehole Kimama-1A near a depth of 676 feet BLS. Drillhole azimuth and horizontal deviation at total logged depth for boreholes Kimama-1A and -1B were 172.6 and 188.3 degrees and 25.9 and 82.0 feet, respectively. Water samples were collected and analyzed for common ions; selected trace elements; nutrients; isotopes of hydrogen, oxygen, and carbon; and selected radionuclides. One set of water samples was collected from the KWS well and the two other sample sets were collected from borehole Kimama-1A near 460 and 830 feet BLS. With one exception, data for all three zones sampled near Kimama generally indicated that the water chemistry was similar. The exception was found in the deepest zone in borehole Kimama-1A (830 feet BLS) where concentrations probably were affected by the drilling mud. A comparison of the inorganic, organic, and stable chemistry data between the KWS well and the 460-foot zone in borehole Kimama-1A indicated similar chemistry of the aquifer water, except for some variability with nitrate plus nitrite, orthophosphate, iron, zinc, and carbon-14. Radionuclide concentrations were either less than reporting levels or at background levels for the eastern Snake River Plain aquifer.

Idaho↗

Monitoring of stage and velocity, for computation of discharge in the Summit Conduit near Summit, Illinois, 2010-2012

Lake Michigan diversion accounting is the process used by the U. S. Army Corps of Engineers to quantify the amount of water that is diverted from the Lake Michigan watershed into the Illinois and Mississippi River Basins. A network of streamgages within the Chicago area waterway system monitor tributary river flows and the major river flow on the Chicago Sanitary and Ship Canal near Lemont as one of the instrumental tools used for Lake Michigan diversion accounting. The mean annual discharges recorded by these streamgages are used as additions or deductions to the mean annual discharge recorded by the main stream gaging station currently used in the Lake Michigan diversion accounting process, which is the Chicago Sanitary and Ship Canal near Lemont, Illinois (station number 05536890). A new stream gaging station, Summit Conduit near Summit, Illinois (station number 414757087490401), was installed on September 23, 2010, for the purpose of monitoring stage, velocity, and discharge through the Summit Conduit for the U.S. Army Corps of Engineers in accordance with Lake Michigan diversion accounting. Summit Conduit conveys flow from a small part of the lower Des Plaines River watershed underneath the Des Plaines River directly into the Chicago Sanitary and Ship Canal. Because the Summit Conduit discharges into the Chicago Sanitary and Ship Canal upstream from the stream gaging station at Lemont, Illinois, but does not contain flow diverted from the Lake Michigan watershed, it is considered a flow deduction to the discharge measured by the Lemont stream gaging station in the Lake Michigan diversion accounting process. This report offers a technical summary of the techniques and methods used for the collection and computation of the stage, velocity, and discharge data at the Summit Conduit near Summit, Illinois stream gaging station for the 2011 and 2012 Water Years. The stream gaging station Summit Conduit near Summit, Illinois (station number 414757087490401) is an example of a nonstandard stream gage. Traditional methods of equating stage to discharge historically were not effective. Examples of the nonstandard conditions include the converging tributary flows directly upstream of the gage; the trash rack and walkway near the opening of the conduit introducing turbulence and occasionally entraining air bubbles into the flow; debris within the conduit creating conditions of variable backwater and the constant influx of smaller debris that escapes the trash rack and catches or settles in the conduit and on the equipment. An acoustic Doppler velocity meter was installed to measure stage and velocity to compute discharge. The stage is used to calculate area based the stage-area rating. The index-velocity from the acoustic Doppler velocity meter is applied to the velocity-velocity rating and the product of the two rated values is a rated discharge by the index-velocity method. Nonstandard site conditions prevalent at the Summit Conduit stream gaging station generally are overcome through the index-velocity method. Despite the difficulties in gaging and measurements, improvements continue to be made in data collection, transmission, and measurements. Efforts to improve the site and to improve the ratings continue to improve the quality and quantity of the data available for Lake Michigan diversion accounting.

Illinois↗

Crustal controls on magmatic-hydrothermal systems: A geophysical comparison of White River, Washington, with Goldfield, Nevada

The White River altered area, Washington, and the Goldfield mining district, Nevada, are nearly contemporaneous Tertiary (ca. 20 Ma) calc-alkaline igneous centers with large exposures of shallow (<1 km depth) magmatic-hydrothermal, acid-sulfate alteration. Goldfield is the largest known high-sulfidation gold deposit in North America. At White River, silica is the only commodity exploited to date, but, based on its similarities with Goldfield, White River may have potential for concealed precious and/or base metal deposits at shallow depth. Both areas are products of the ancestral Cascade arc. Goldfield lies within the Great Basin physiographic province in an area of middle Miocene and younger Basin and Range and Walker Lane faulting, whereas White River is largely unaffected by young faults. However, west-northwest–striking magnetic anomalies at White River do correspond with mapped faults synchronous with magmatism, and other linear anomalies may reflect contemporaneous concealed faults. The White River altered area lies immediately south of the west-northwest–striking White River fault zone and north of a postulated fault with similar orientation. Structural data from the White River altered area indicate that alteration developed synchronously with an anomalous stress field conducive to left-lateral, strike-slip displacement on west-northwest–striking faults. Thus, the White River alteration may have developed in a transient transtensional region between the two strike-slip faults, analogous to models proposed for Goldfield and other mineral deposits in transverse deformational zones. Gravity and magnetic anomalies provide evidence for a pluton beneath the White River altered area that may have provided heat and fluids to overlying volcanic rocks. East– to east-northeast–striking extensional faults and/or fracture zones in the step-over region, also expressed in magnetic anomalies, may have tapped this intrusion and provided vertical and lateral transport of fluids to now silicified areas. By analogy to Goldfield, geophysical anomalies at the White River altered area may serve as proxies for geologic mapping in identifying faults, fractures, and intrusions relevant to hydrothermal alteration and ore formation in areas of poor exposure.

Nevada, Washington↗