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Coral disease is a major cause of reef decline in the Florida Keys. Bacterium has been defined as the most common pathogen (disease-causing organism). Although much is being done to catalog coral diseases, map their locations, determine the causes of disease, or measure the rates of coral demise, very little research has been directed toward actually preventing or eliminating the diseases affecting coral and coral reef decline.
There are several measures of the 'cleanliness' of a natural body of water, including concentrations of indicator bacteria, anthropogenic chemicals (chemicals derived from human activities), and nutrients, such as nitrogen and phosphorous. Escherichia coli (E. coli) is a bacterium that lives in the intestinal tract of warm-blooded animals, such as humans, deer, cows, and dogs. Most strains of E. coli are not harmful and are in fact beneficial to humans by aiding in the digestive process. A few strains, such as the O157 strain, produce toxins that can cause gastrointestinal illness, but occurrence of toxic strains in the environment is not common. E. coli is considered a good indicator bacterium because its occurrence in the environment indicates the presence of fecal contamination and therefore the possible presence of pathogenic organisms associated with feces. The U.S. Environmental Protection Agency (USEPA) recommends using measurements of E. coli to monitor freshwaters and set criteria for the concentration of bacteria that can be present in the water with minimal adverse human-health effects. Typically, a State's waters are assigned a recreational-use designation, such as bathing, primary-contact, or secondary contact waters, which is used to set the State's water-quality standards based on the USEPA criteria. The Cuyahoga River in the Cuyahoga Valley National Park is designated for primary-contact recreation; therefore, when concentrations of E. coli exceed 298 CFU/100mL, the river would be considered potentially unsafe for recreation.
This fact sheet highlights findings from the vulnerability study of a public-supply well field in San Antonio, Texas. The well field consists of six production wells that tap the Edwards aquifer. Typically, one or two wells are pumped at a time, yielding an average total of 20-21 million gallons per day. Water samples were collected from public-supply wells in the well field and from monitoring wells installed along general directions of flow to the well field. Samples from the well field contained some constituents of concern for drinking-water quality, including nitrate; the pesticide compounds atrazine, deethylatrazine, and simazine; and the volatile organic compounds tetrachloroethene (also called perchloroethene, or PCE), chloroform, bromoform, and dibromochloromethane. These constituents were detected in untreated water at concentrations much less than established drinking-water standards, where such standards exist. Overall, the study findings point to four primary factors that affect the movement and fate of contaminants and the vulnerability of the public-supply well field in San Antonio, Texas: (1) groundwater age (how long ago water entered, or recharged, the aquifer), (2) fast pathways for flow of groundwater through features formed or enlarged by dissolution of bedrock, (3) recharge characteristics of the aquifer, and (4) natural geochemical processes within the aquifer. A computer-model simulation of groundwater flow and transport was used to estimate the traveltime (or age) of water particles entering public-supply well W4 in the well field. Modeled findings show that almost half of the water reaching the public-supply well is less than 2 years old. Such a large percentage of very young water indicates that (1) contaminants entering the aquifer may be transported rapidly to the well, (2) there is limited time for chemical reactions to occur in the aquifer that may attenuate contaminants, and (3) should recharge water become contaminated with pathogenic microorganisms (which have limited survival times in aquifers), the microorganisms may be able to persist to the well. Features formed or enlarged by dissolution of bedrock allow most of the water reaching the well field to travel rapidly from the recharge zone to the supply wells along fast pathways rather than through the aquifer matrix. Supporting evidence includes (1) geophysical logging and flowmeter measurements in public-supply well W4 and in nearby monitoring wells showing that most of the flow volume into and out of the wells occurs in three horizontal zones, thought to be dissolution-enlarged bedding planes; and (2) fluctuations in groundwater chemistry that can be correlated to individual precipitation events. Analysis of water samples collected from shallow, intermediate, and deep zones of the Edwards aquifer at public-supply well W4 and from nearby monitoring wells reveal that water in the vicinity of the selected well field is notably well mixed throughout the sampled thickness of the Edwards aquifer, showing little of the chemical variation with depth that is commonly seen in other aquifers. Contaminants were found at all depths, and they did not enter the well through a specific horizon. The well-mixed nature of the Edwards aquifer is caused by the recharge characteristics of the area combined with fast flow paths through karst features. Constituents of concern in the Edwards aquifer for the long-term sustainability of the groundwater resource include the nutrient nitrate and anthropogenic contaminants such as atrazine, PCE, and chloroform. A scenario of hypothetical contaminant loading in the aquifer recharge zone was evaluated by using results from groundwater-flow-model particle tracking to assess the response of the aquifer to potential contamination. Results indicate that the concentrations at public-supply well W4 would begin to respond to contaminant loading in the recharge zone within 1 year because of short traveltimes through fast flow paths. Within 10 years, contaminant concentrations in the public-supply well would be equal to 90 percent of the input concentration for a contaminant (such as nitrate) that does not degrade in the oxic conditions of the Edwards aquifer.
The overall mission of U.S. Geological Survey (USGS) Beach Health Initiative is to provide science-based information and methods that will allow beach managers to more accurately make beach closure and advisory decisions, understand the sources and physical processes affecting beach contaminants, and understand how science-based information can be used to mitigate and restore beaches and protect the public. The USGS, in collaboration with many Federal, State, and local agencies and universities, has conducted research on beach-health issues in the Great Lakes Region for more than a decade. The work consists of four science elements that align with the initiative's mission: real-time assessments of water quality; coastal processes; pathogens and source tracking; and data analysis, interpretation, and communication. The ongoing or completed research for each of these elements is described in this fact sheet.
In a series of studies along the Great Lakes, U.S. Geological Survey scientists are examining the physical processes that influence concentrations of fecal indicator bacteria and related pathogens at recreational beaches. These studies aim to estimate human health risk, improve management strategies, and understand the fate and transport of microbes in the nearshore area. It was determined that embayed beaches act as traps, accumulating Escherichia coli (E. coli) and other bacteria in the basin and even in beach sand. Further, shear stress and wave run-up could resuspend accumulated bacteria, leading to water-contamination events. These findings are being used to target beach design and circulation projects. In previous research, it was determined that E. coli followed a diurnal pattern, with concentrations decreasing throughout the day, largely owing to solar inactivation, but rebounding overnight. Studies at a Chicago beach identified the impact of wave-induced mass transport on this phenomenon, a finding that will extend our understanding of bacterial fate in the natural environment. In another series of studies, scientists examined the impact of river outfalls on bacteria concentrations, using mechanistic and empirical modeling. Through these studies, the models can indicate range and extent of impact, given E. coli concentration in the source water. These findings have been extended to extended lengths of coastlines and have been applied in beach management using empirical predictive modeling. Together, these studies are helping scientists identify and eliminate threats to human and coastal health.
Healthy aquatic ecosystems are home to a diversity of plants, invertebrates, fish and wildlife. Aquatic animal populations face unprecedented threats to their health and survival from climate change, water shortages, habitat alteration, invasive species and environmental contaminants. These environmental stressors can directly impact the prevalence and severity of disease in aquatic populations. For example, periodic fish kills in the upper Chesapeake Bay Watershed are associated with many different opportunistic pathogens that proliferate in stressed fish populations. An estimated 80 percent of endangered juvenile Puget Sound steelhead trout die within two weeks of entering the marine environment, and a role for disease in these losses is being investigated. The introduction of viral hemorrhagic septicemia virus (VHSV) into the Great Lakes—a fishery worth an estimated 7 billion dollars annually—resulted in widespread fish die-offs and virus detections in 28 different fish species. Millions of dying sea stars along the west coast of North America have led to investigations into sea star wasting disease. U.S. Geological Survey (USGS) scientists are assisting managers with these issues through ecological investigations of aquatic animal diseases, field surveillance, and research to promote the development of mitigation strategies.
The U.S. Geological Survey in collaboration with the U.S. Fish and Wildlife Service and others have published reports with information about geographic distribution, specific pathogens, disease ecology, and strategies to avoid exposure and infection for a selection of zoonotic diseases. Zoonotic diseases are diseases that can be passed from animals to humans, such as rabies and plague. This summary factsheet highlights the reports on plague, bat rabies, and raccoon roundworm with links to all seven zoonotic diseases covered in this series.
At Tumacácori National Historical Park in southern Arizona, resource managers are concerned about microbial pathogens in the Santa Cruz River that could pose a serious health risk to employees and visitors. The U.S. Geological Survey recently completed a comprehensive 3-year study of water quality in the Santa Cruz River watershed that investigated the possible sources of microbial contamination and how it relates to the amount of water and suspended sediment in the river. The results of this study help water managers and park administration better address this contamination and issue warnings to the public when the water is unsafe.
Introduction Invasive species research within the U.S. Geological Survey’s (USGS) Ecosystems Mission Area focuses on invasive plants, animals, and pathogens throughout the United States. USGS scientists provide science support to help solve the problems posed by these nonnative species while working with partners in the U.S. Department of the Interior (DOI), other Federal, State, and Territorial agencies, Tribes, industry, agriculture, and nonprofit organizations. Key components of USGS invasive species science include the development of novel prevention, prediction, early detection, containment, and control tools.
The U.S. Geological Survey (USGS) delivers information critical to powering our economy, managing our natural resources, and keeping Americans safe and healthy. 1 Mapping the Nation $21B Geologic maps save users an estimated 15% in annual costs: a value of between $14B and $21B. $25.6B in annual value to users of imagery from Landsat satellites, which were codeveloped by NASA and the USGS and operated through their lifespans by the USGS. $13.5B in annual benefits is generated by the USGS's 3D Elevation Program. Securing America’s Energy Independence 44% USGS-identified undiscovered geothermal energy is equal to 44% of current U.S. electricity generation. 29.4B barrels of oil and 391.6 trillion cubic feet of gas in recoverable resources are available on U.S. public lands based on USGS assessments. Protecting Americans’ Health and Safety $424B in recent wildland fire damages highlight the need for USGS fire science, which supports efforts to protect communities and reduce risk. USGS earthquake, volcano, landslide, and coastal hazard monitoring and information save lives and minimize costs; for example, $2.8M can be saved because of USGS enhanced information about a Mauna Loa eruption. $4.5B is the estimated cost of annual flooding. Through a network of over 11,885 streamgages, the USGS supports public safety and enables forecasts, early warning systems, and management actions that protect lives and property. Supporting National Security $3.1B The USGS identified a $3.1B risk to the American economy if China restricts gallium imports. This is one example underscoring the importance of the USGS mapping critical minerals, investigating supply chains, and producing the Nation’s critical minerals list. Enhancing Our Lands and Waters $21B in estimated annual costs results from invasive species. The USGS’s invasive species research informs approaches used to reduce their effects on agriculture, water infrastructure, disease transmission, fisheries, and outdoor recreation. USGS innovations support early warnings for harmful algal blooms—over $2M in yearly benefits are provided to Kansas alone. $45B USGS science informs the management of big game (such as deer and elk). The big-game hunting industry contributes $45B to the U.S. economy. Fostering American Prosperity $4.1T Mineral commodities are necessary for the $4.1T in value added to the GDP by major industries that consume processed mineral materials and employ 1 million workers. Because of this, USGS data on mineral supply, demand, and trade are highly valued. 45,000 metric tons Rare earths power the growing technology economy, including cell phones, electric vehicles, and medical devices. For over 70 years, USGS work has supported the discovery of rare earth resources in California’s Mountain Pass area, which produced 45,000 metric tons of rare earth concentrates in 2024—over 11% of the global supply. Guarding American Food Security $70.2B USGS science informs early warning systems and management strategies to mitigate disease outbreaks in agriculture—critical research on highly pathogenic avian influenza, for example, helps safeguard the $70B value in poultry and egg production. $11.8B USGS groundwater tools are vital for agriculture; for example, in the Mississippi Alluvial Plain, 65% of farming relies on groundwater to support its $11.8B annual industry. 1 Values throughout are given in billions (B), millions (M), and trillions (T) of U.S. dollars. GDP is “Gross Domestic Product.” Percentages are shown as %.
High incidences of neurodegenerative diseases, mainly dementia, parkinsonism, and amyotrophic lateral sclerosis, occur on the island of Guam (Koerner, 1952; Kurland and Mulder, 1954). The occurrence and description of the diseases and a summary of the investigations can be found in Perl (1997). The diseases have been more prevalent along the southern coast, particularly the small villages of Umatac, Merizo, and Inarajan (Reed and Brody, 1975; Roman, 1996; and Perl, 1997) (fig. 1), and referred to as the southern villages in this report. Tertiary volcanic rocks underlie most of the southern part of the island, including these villages. The northern part of Guam, with lower incidences of the diseases, consists of carbonate rocks. Epidemiological studies beginning in the early 1950’s failed to show the cause to be genetic etiology (Plato and others, 1986; Zhang and others, 1990). In recent studies, the search for pathogenic mechanisms has shifted to environmental factors. Excesses or deficiencies of various elements from dietary sources including drinking water can have an effect on human health. These deficiencies or excesses can usually be attributed to the geochemical composition of the rocks and derived soils that underlie the area. An example is the high concentration of Se in soil associated with the occurrence of selenosis in adults (Mills, 1996). Yase (1972) suggested that the neurodegenerative diseases on Guam may be related to accumulation of trace elements such as manganese and aluminum, both of which may cause neurodegeneration. It has been suggested that a deficiency in calcium and magnesium in the soil and water along with readily available aluminum could be connected to the occurrence of the diseases (Gajdusek, 1982; Yanagihara and others, 1984; Garruto and others, 1989). Some of the studies investigated metal exposure, particularly aluminum and manganese, and deficiencies in calcium and magnesium (Garruto and others, 1984). Aluminum has been shown to have neurotoxic effects (MacDonald and Martin, 1988), and aluminum has been implicated in the pathogenesis of Alzheimer’s disease and similar dementia by Perl and others (1982). Studies of soils developed on volcanic rocks on Guam and other islands by McLachlan and others (1989) found that soils on Guam averaged 42-fold higher yield of elutable aluminum than soils developed on volcanic rocks on Jamaica or Palau. They did not detect unusually high dietary aluminum or low dietary calcium, but concluded that the soils and possibly the dusts of Guam might be a major source of aluminum entering the body of the inhabitants. This study was conducted to investigate the geochemistry of the soils and rocks of the volcanic southern part of the island of Guam, particularly in the vicinity of the three southern villages (Umatac, Merizo, and Inarajan) with high incidences of the diseases. In addition to total chemical analyses of the soils and rocks, various extractions of soils were carried out. Both excesses and deficiencies of various elements were looked for. Because soluble aluminum in the soil was shown by McLachlan and others (1989) to be unusually high, water-soluble extractions as well as sequential extractions of the soils were carried out. In addition, elements such as aluminum found in dust can traverse the nose-brain barrier in experimental animals (Sunderman, 2000) and respiratory epithelium is known to contain the highest concentration of aluminum in the human body (Tipton and others, 1957). The availability of elements, particularly aluminum from human inhalation of dust, derived from soil, was investigated. The available elements were determined by extractions of soils using a simulated lung-fluid extraction. In order to compare the results of the chemical data of rocks and soils from Guam to other rocks and soils elsewhere, samples of similar rocks and soils were collected in the western United States and similar analyses to those for the Guam samples carried out. The complete chemical analyses of the soils, rocks, and streambed sediments as well as descriptions of the methods used can be found in Miller and others (2002).
Introduction Since the enactment of the Clean Water Act in 1972, awareness of the quality of the Nation's water has continued to improve. Despite improvements to wastewater-treatment systems and increased regulation on waste discharge, bacterial and chemical contamination is still a problem for many rivers and lakes throughout the United States. Pathogenic microorganism and newly recognized chemical contaminants have been found in waters that are used for drinking water and recreation (Rose and Grimes, 2001; Kolpin and others, 2002). This summary of bacteria and emerging-chemical-contaminant monitoring in the St. Clair River/Lake St. Clair Basin (fig. 1) was initiated by the Lake St. Clair Regional Monitoring Project (LSCRMP) in 2003, in cooperation with the Michigan Department of Environmental Quality (MDEQ), the Counties of Macomb, Oakland, St. Clair, and Wayne, and the U.S. Geological Survey (USGS).
The National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey (USGS) began implementing Source Water-Quality Assessments (SWQAs) in 2002 that focus on characterizing the quality of source water and finished water of aquifers and major rivers used by some of the larger community water systems in the United States. As used for SWQA studies, source water is the raw (ambient) water collected at the supply well prior to water treatment (for ground water) or the raw (ambient) water collected from the river near the intake (for surface water). Finished water is the water that is treated, which typically involves, in part, the addition of chlorine or other disinfection chemicals to remove pathogens, and is ready to be delivered to consumers. Finished water is collected before the water enters the distribution system. This report describes the study design and percent recoveries of anthropogenic organic compounds (AOCs) with and without the addition of ascorbic acid to preserve water samples containing free chlorine. The percent recoveries were determined by using analytical results from a laboratory study conducted in 2004 by the USGS's National Water Quality Laboratory (NWQL) and from data collected during 2004-06 for a field study currently (2008) being conducted by the USGS's NAWQA Program. The laboratory study was designed to determine if preserving samples with ascorbic acid (quenching samples) adversely affects analytical performance under controlled conditions. During the laboratory study, eight samples of reagent water were spiked for each of five analytical schedules evaluated. Percent recoveries from these samples were then compared in two ways: (1) four quenched reagent spiked samples analyzed on day 0 were compared with four quenched reagent spiked samples analyzed on day 7 or 14, and (2) the combined eight quenched reagent spiked samples analyzed on day 0, 7, or 14 were compared with eight laboratory reagent spikes (LRSs). Percent recoveries from the quenched reagent spiked samples that were analyzed at two different times (day 0 and day 7 or 14) can be used to determine the stability of the quenched samples held for an amount of time representative of the normal amount of time between sample collection and analysis. The comparison between the quenched reagent spiked samples and the LRSs can be used to determine if quenching samples adversely affects the analytical performance under controlled conditions. The field study began in 2004 and is continuing today (February 2008) to characterize the effect of quenching on field-matrix spike recoveries and to better understand the potential oxidation and transformation of 277 AOCs. Three types of samples were collected from 11 NAWQA Study Units across the Nation: (1) quenched finished-water samples (not spiked), (2) quenched finished-water spiked samples, and (3) nonquenched finished-water spiked samples. Percent recoveries of AOCs in quenched and nonquenched finished-water spiked samples collected during 2004-06 are presented. Comparisons of percent recoveries between quenched and nonquenched spiked samples can be used to show how quenching affects finished-water samples. A maximum of 6 surface-water and 7 ground-water quenched finished-water spiked samples paired with nonquenched finished-water spiked samples were analyzed. Analytical results for the field study are presented in two ways: (1) by surface-water supplies or ground-water supplies, and (2) by use (or source) group category for surface-water and ground-water supplies. Graphical representations of percent recoveries for the quenched and nonquenched finished-water spiked samples also are presented.
Groundwater resources in the United States are under ever-increasing demands for potable, irrigation, and recreational uses. Additionally, aquifer systems are being used or targeted for use as storage areas for treated surface waters and (or) groundwaters via injection (for example, aquifer storage and recovery). To date, the influence that the nutrients, including carbon, in the injected water have on native microbial communities and the biogeochemistry in the subsurface zones used for storage of the injectate has not been determined. In this report, we describe a series of experiments that establishes a baseline dataset for the quantity and quality of organic and inorganic carbon and nutrients in the Biscayne Aquifer (BA) and Upper Floridan Aquifer (UFA) in south Florida. The most significant differences between the BA (26 meters below surface) and UFA (366 meters below surface) are the average specific conductance (0.552 and 6.12 microsiemens per centimeter, respectively), dissolved oxygen (1.6 and 0 milligrams per liter, respectively), and oxidation-reduction potential (40.3 and -358 millivolts, respectively). The dissolved organic carbon from the BA is characterized by carbon originating from terrestrial sources and microbial activities, while the UFA has a distinctive microbial signature. Acetate and lactate are the dominant carbon constituents in both aquifers. Additionally, components of the dissolved organic carbon from the UFA have a total trihalomethane-formation potential that is approximately threefold greater than the maximum contaminat level of 80 micrograms per liter established by the U.S. Environmental Protection Agency. The average native bacterial abundances in the aquifers are similar with 4.69x10^4 cells per milliliter in the BA and 1.33x10^4 cells per milliliter in the UFA. The average bacteriophage abundances are also similar with 1.15x10^5 virus-like particles in the BA and 1.92x10^5 virus-like particles in the UFA. Interestingly, ciliated protozoa are present in both aquifers. The average abundance of ciliates in the BA (2.97x10^3 ciliates per milliliter) is approximately twentyfold greater than abundances in the UFA (1.39x10^2 ciliates per milliliter). Collectively, these data indicate that microbial processes are the dominant contributor to the cycling of carbon and inorganic carbon in the BA and may be the only carbon cycling process in the UFA, as this aquifer has not had a terrestrial influx of carbon for more than 15,000 years. The rates of carbon, in the form of acetate, utilization by the native microbial communities are significantly different between the two aquifers. Based on data from 14C-acetate-utilization experiments, the microbial communities in the BA turn over the native acetate in 2.5 years, whereas communities in the UFA turn over native acetate in 6.8 years. These data support the hypothesis derived from the microbial-abundance data, in that the carbon for bacterial maintainence and growth is recycled from bacterial biomass released during cell lysis, especially in the UFA. An in situ diffusion chamber was designed to retain bacterial cells within the chamber while allowing native water constituents to move through the chamber. A series of 1-week deployments of chambers filled with fluorescent beads, inactivated native bacteria and laboratory grown and viable bacteria into the UFA, permitted by the State of Florida Environmental Protection Agency, was successfully completed. This was the first time this type of deployment into an aquifer system that is used for potable water supply has been permitted within the United States. This technology will allow, for the first time, in situ studies on the survival of microbial indicators of fecal pollution and true pathogens in groundwater systems.
First documented in New York State in 2006, white nose syndrome (WNS) quickly became the leading cause of mortality in hibernating bat species in the United States. WNS is caused by a psychrophilic fungus, Geomyces destructans. Clinical signs of this pathogen are expressed as a dusty white fungus predominately around the nose and on the wings of affected bats. Relatively new biomarkers, such as microRNAs (miRNAs) are being targeted as markers to predict the syndrome prior to the clinical manifestation. The primary objective of this study was to identify miRNAs that could serve as biomarkers and proxies of little brown bat health. Bats were collected from hibernacula that had tested positive and negative for WNS. Genetic sequencing was completed using the Ion Torrent platform. A number of miRNAs were identified from the liver as putative biomarkers of WNS. However, given the small sample size for each treatment, this data set has only coarsely identified miRNAs indicative of WNS, and further validation is required.
Coastal communities are uniquely vulnerable to sea-level rise (SLR) and severe storms such as hurricanes. These events enhance the dispersion and concentration of natural and anthropogenic chemicals and pathogenic microorganisms that could adversely affect the health and resilience of coastal communities and ecosystems in coming years. The U.S. Geological Survey has developed a strategy to define baseline and post-event sediment-bound environmental health (EH) stressors (hereafter referred to as the Sediment-Bound Contaminant Resiliency and Response [SCoRR] strategy). A tiered, multimetric approach will be used to (1) identify and map contaminant sources and potential exposure pathways for human and ecological receptors, (2) define the baseline mixtures of EH stressors present in sediments and correlations of relevance, (3) document post-event changes in EH stressors present in sediments, and (4) establish and apply metrics to quantify changes in coastal resilience associated with sediment-bound contaminants. Integration of this information provides a means to improve assessment of the baseline status of a complex system and the significance of changes in contaminant hazards due to storm-induced (episodic) and SLR (incremental) disturbances. This report describes the purpose and design of the SCoRR strategy and the methods used to construct a decision support tool to identify candidate sampling stations vulnerable to contaminants that may be mobilized by coastal storms.
An understanding of the effects on human and ecological health brought by major coastal storms or flooding events is typically limited because of a lack of regionally consistent baseline and trends data in locations proximal to potential contaminant sources and mitigation activities, sensitive ecosystems, and recreational facilities where exposures are probable. In an attempt to close this gap, the U.S. Geological Survey (USGS) has implemented the Sediment-bound Contaminant Resiliency and Response (SCoRR) strategy pilot study to collect regional sediment-quality data prior to and in response to future coastal storms. The standard operating procedure (SOP) detailed in this document serves as the sample-collection protocol for the SCoRR strategy by providing step-by-step instructions for site preparation, sample collection and processing, and shipping of soil and surficial sediment (for example, bed sediment, marsh sediment, or beach material). The objectives of the SCoRR strategy pilot study are (1) to create a baseline of soil-, sand-, marsh sediment-, and bed-sediment-quality data from sites located in the coastal counties from Maine to Virginia based on their potential risk of being contaminated in the event of a major coastal storm or flooding (defined as Resiliency mode); and (2) respond to major coastal storms and flooding by reoccupying select baseline sites and sampling within days of the event (defined as Response mode). For both modes, samples are collected in a consistent manner to minimize bias and maximize quality control by ensuring that all sampling personnel across the region collect, document, and process soil and sediment samples following the procedures outlined in this SOP. Samples are analyzed using four USGS-developed screening methods—inorganic geochemistry, organic geochemistry, pathogens, and biological assays—which are also outlined in this SOP. Because the SCoRR strategy employs a multi-metric approach for sample analyses, this protocol expands upon and reconciles differences in the sample collection protocols outlined in the USGS “National Field Manual for the Collection of Water-Quality Data,” which should be used in conjunction with this SOP. A new data entry and sample tracking system also is presented to ensure all relevant data and metadata are gathered at the sample locations and in the laboratories.
Water temperature is a basic, but important, measure of the condition of all aquatic environments, including the flowing waters in the streams that drain our landscape and the receiving waters of those streams. Climatic conditions have a strong influence on water temperature, which is therefore naturally variable both in time and across the landscape. Changes to natural water-temperature regimes, however, can result in a myriad of effects on aquatic organisms, water quality, circulation patterns, recreation, industry, and utility operations. For example, most species of fish, insects, and other organisms, as well as aquatic vegetation, are highly dependent on water temperature. Warming waters can result in shifts in floral and faunal species distributions, including invasive species and pathogens previously unable to inhabit the once cooler streams. Many chemical processes are temperature dependent, with reactions occurring faster in warmer conditions, leading to degraded water quality as contaminants are released into waterways at greater rates. Circulation patterns in receiving waters, such as bays and estuaries, can change as a result of warmer inflows from streams, thereby affecting organisms in those receiving waters. Changes in abundance of some aquatic species and (or) degradation of water quality can reduce the recreational value of water bodies as waters are perceived as less desirable for water-related activities or as sportfish become less available for anglers. Finally, increasing water temperatures can affect industry and utilities as the thermal capacity is reduced, making the water less effective for cooling purposes. Chesapeake Bay is the largest estuary in the United States. Eutrophication, the enrichment of a water body with excess nutrients, has plagued the bay for decades and has led to extensive restoration efforts throughout the bay watershed. The warming of stream water can exacerbate eutrophication through increased release of nutrients from in-stream sediments, so understanding changes in stream-water temperature throughout the bay watershed is critical to resource managers seeking to restore the bay ecosystem. The U.S. Environmental Protection Agency (EPA) uses indicators that “represent the state or trend of certain environmental or societal conditions … to track and better understand the effects of changes in the Earth’s climate” (U.S. Environmental Protection Agency, 2014). Updates to these indicators are published biennially by the EPA. The U.S. Geological Survey (USGS), in cooperation with the EPA, has completed analyses of air- and stream-water-temperature trends in the Chesapeake Bay region to be included as an indicator in a future release of the EPA report.