SEARCH · Geology Reports

Results for “Fish and Fisheries”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,297 records · Page 72Linked to original sources

USGS2002

Behavioural and physiological response of trout to winter habitat in tailwaters in Wyoming, USA

Fisheries managers have often suggested that survival of trout during the winter is a major factor affecting population densities in many stream ecosystems in the Rocky Mountains. In Wyoming, trout population reductions from fall to spring in excess of 90% have been documented in some reservoir tailwaters. Though biologists have surmised that these reductions were the result of either mortality or emigration from some river sections, the specific mechanisms have not been defined and the factors leading to the trout loss are unknown. This is a review of four studies that were conducted or funded between 1991 and 1998 by the Wyoming Game and Fish Department to understand the extent of overwinter losses, identify some of the mechanisms leading to those conditions and develop management strategies to help avoid those impacts. Winter studies were conducted on tailwater fisheries in the Green, North Platte, Bighorn and Shoshone rivers to document trout population dynamics, assess physical habitat availability, evaluate trout movement and habitat selection, and understand the relationships between food availability and bioenergetic relationships. Results indicate that winter trout losses are extreme in some years, that trout movement and habitat selection are affected by supercooled flows, and that mortality is probably not directly due to starvation. The combination of physiological impairment with frequently altered habitat availability probably leads to indirect mortality from predators and other factors. Copyright ?? 2002 John Wiley & Sons, Ltd.

Hydrological Processes↗

USGS2016

Alaska Arctic marine fish ecology catalog

The marine fishes in waters of the United States north of the Bering Strait have received new and increased scientific attention over the past decade (2005–15) in conjunction with frontier qualities of the region and societal concerns about the effects of Arctic climate change. Commercial fisheries are negligible in the Chukchi and Beaufort Seas, but many marine species have important traditional and cultural values to Alaska Native residents. Although baseline conditions are rapidly changing, effective decisions about research and monitoring investments must be based on reliable information and plausible future scenarios. For the first time, this synthesis presents a comprehensive evaluation of the marine fish fauna from both seas in a single reference. Although many unknowns and uncertainties remain in the scientific understanding, information presented here is foundational with respect to understanding marine ecosystems and addressing dual missions of the U.S. Department of the Interior for energy development and resource conservation.

Scientific Investigations Report↗

USGS2007

Effects of antenna length and material on output power and detection of miniature radio transmitters

The optimal antenna of transmitters used in small aquatic animals is often a compromise between efficient radio wave propagation and effects on animal behavior. Radio transmission efficiency generally increases with diameter and length of the conductor, but increased antenna length or weight can adversely affect animal behavior. We evaluated the effects of changing antenna length and material on the subsequent tag output power, reception, and detection of tagged fish. In a laboratory, we compared the relative signal strengths in water of 150 MHz transmitters over a range of antenna lengths (from 6 to 30 cm) and materials (one weighing about half of the other). The peak relative signal strengths were at 20 and 22 cm, which are approximately one wavelength underwater at the test frequency. The peak relative signal strengths at these lengths were approximately 50% greater than those of 30 cm antennas, a length commonly used in fisheries research. Few significant differences were present in distances for the operator to hear or the telemetry receiver to decode transmitters from a boat-mounted receiving system based on antenna length, but the percent of tagged fish detected passing a hydroelectric dam fitted with an array of receiving systems was significantly greater at the antenna length with peak output power in laboratory tests. This study indicates careful choice of antenna length and material of small transmitters can be used to reduce weight and possible antenna effects on animal behavior, to maximize tag output power and detection, or to balance these factors based on the needs of the application. ?? 2007 Springer Science+Business Media B.V.

Conference Paper↗

USGS1997

An empirical comparison of stock identification techniques applied to striped bass

Managers of migratory striped bass stocks that mix along the Atlantic coast of the USA require periodic estimates of the relative contributions of the individual stocks to coastal mixed- stock fisheries; however, to date, a standard approach has not been adopted. We compared the performances of alternative stock identification approaches, using samples taken from the same sets of fish. Reference (known) samples were collected from three Atlantic coast spawning systems: the Hudson River, Chesapeake Bay, and the Roanoke River. Striped bass of mixed-stock origin were collected from eastern Long Island, New York, and were used as test (unknown) samples. The approaches applied were discriminant analysis of morphometric data and of meristic data, logistic regression analysis of combined meristic and morphometric data, discriminant analysis of scale-shape features, discriminant analysis of immunoassay data, and mixed-stock analysis of mitochondrial DNA (mtDNA) data. Overall correct classification rates of reference samples ranged from 94% to 66% when just the Hudson and Chesapeake stocks were considered and were comparable when the Chesapeake and Roanoke stocks were grouped as the ''southern'' stock. When all three stocks were treated independently, correct classification rates ranged from 82% to 49%. Despite the moderate range in correct classification rates, bias due to misallocation was relatively low for all methods, suggesting that resulting stock composition estimates should be fairly accurate. However, relative contribution estimates for the mixed-stock sample varied widely (e.g., from 81% to 47% for the Hudson River stock, when only the Hudson River and Chesapeake Bay stocks were considered). Discrepancies may be related to the reliance by all of these approaches (except mtDNA) on phenotypic features. Our results support future use of either a morphometrics-based approach (among the phenotypic methods) or a genotypic approach based on mtDNA analysis. We further recommend a conservative strategy of reliance on a single approach in tracking changes in relative contributions of striped bass stocks to coastal fisheries.

Transactions of the American Fisheries Society↗

USGS2025

Sustaining Namāēw (Lake Sturgeon): Partner-led climate adaptation for Indigenous fisheries in the Laurentian Great Lakes

Namāēw (Menominee; Lake Sturgeon Acipenser fulvescens ) have long supported Indigenous culture and food sovereignty but have declined by over 80% in the Laurentian Great Lakes, exacerbating their sensitivity to climate change. Following interest from Indigenous leaders, we initiated a partnership-driven effort to (1) assess climate effects and (2) develop potential adaptation options for Namāēw using a participatory, transdisciplinary approach that combines multiple ways of knowing. Through a literature review and nine semistructured conversations with officials from Indigenous Nations and organizations in the Great Lakes, we identified central themes including access, culture, and fish persistence. Other concerns included habitat, food web shifts, and water quality. Prominent adaptation themes involved population assessments, stocking, regulations, habitat restoration, interagency coordination, and cultural advocacy. These findings underscore the importance of partnership-driven research to support Indigenous fisheries through knowledge coproduction and equitable adaptation. Our approach provides a model to inform stewardship planning for fisheries that are facing global change.

Laurentian Great Lakes↗

USGS2014

Evidence of natural reproduction by Muskellunge in middle Tennessee rivers

Native Esox masquinongy (Muskellunge) in the Cumberland River drainage, TN, were nearly extirpated in the 1970s due to decades of over-fishing and habitat degradation from coal mining, logging, and other land-use practices. In an effort to preserve the species in that drainage, a stocking program began in 1976 in the upper Caney Fork River system in middle Tennessee where Muskellunge were not native. A trophy Muskellunge fishery eventually developed, but it was unknown whether Muskellunge were reproducing in the upper Caney Fork River system or whether the fishery was wholly dependent on the stocking program. To establish evidence of natural reproduction, we used seines, backpack electrofishing, and boat electrofishing gear in 2012 to find age-0 Muskellunge in the upper Caney Fork River system. Natural reproduction of Muskellunge was documented in the mainstem Caney Fork River above Great Falls Dam and in 3 of its 4 major tributaries. Seventeen age-0 Muskellunge were collected and one other was observed, but not handled. Age-0 Muskellunge grew rapidly (1.80–2.34 mm/day), and the largest fish collected during the study reached a total length of 399 mm by 9 October 2012. A cessation of stocking for several years coupled with routine monitoring could reveal whether natural recruitment is sufficient to sustain the fishery.

Tennessee↗

USGS2018

Evaluating the conservation potential of tributaries for native fishes in the Upper Colorado River Basin

We explored the conservation potential of tributaries in the upper Colorado River basin by modeling native fish species richness as a function of river discharge, temperature, barrier‐free length, and distance to nearest free‐flowing main‐stem section. We investigated a historic period prior to large‐scale water development and a contemporary period. In the historic period, species richness was log‐linearly correlated to variables capturing flow magnitude, particularly mean annual discharge. In the contemporary period, the log‐linear relationship between discharge and species richness was still evident but weaker. Tributaries with lower average temperature and separated from free‐flowing main‐stem sections often had fewer native species compared to tributaries with similar discharge but with warmer temperature and directly connected to free‐flowing main stems. Thus, tributaries containing only a small proportion of main‐stem discharge, especially those at lower elevations with warmer temperatures and connected to free‐flowing main stems, can support a relatively high species richness. Tributaries can help maintain viable populations by providing ecological processes disrupted on large regulated rivers, such as natural flow and temperature regimes, and may present unique conservation opportunities. Efforts to improve fish passage, secure environmental flows, and restore habitat in these tributaries could greatly contribute to conservation of native fish richness throughout the watershed.

Upper Colorado River Basin↗

USGS2023

Influence of electrofishing boat operation and driving techniques on reservoir fish catches

We compared three methods of boat driving and pedal operation using 600-s transects: these were the parallel continuous (PC), parallel intermittent (PI), and arc-intermittent (AI) methods for surveying warmwater fishes in reservoirs. We tested differences in total time and distance per transect, CPUE (fish/h, fish/m), and length frequencies of captured fish among methods. The PC method took the least amount of time, while the AI method took the least amount of distance to complete a transect. The AI method provided slightly higher CPUE (fish/h, fish/m) for Bluegill Lepomis macrochirus and Yellow Bass Morone mississippiensis and higher CPUE (fish/m) for Common Carp Cyprinus carpio , Green Sunfish L. cyanellus , and Largemouth Bass Micropterus salmoides . Each method caught similar size ranges of fish; however, there were slight differences in proportions of sizes for Gizzard Shad Dorosoma cepedianum , Largemouth Bass, and Bluegill. Overall, the AI method performed slightly better for a few species; however, difference in the methods were minor. Any technique should work well for monitoring reservoir fish populations when fish/h is the effort metric.

Fisheries Magazine↗

USGS2019

Decision analysis for the reintroduction of Bull Trout into the lower Pend Oreille River, Washington

The decision to reintroduce a species can be difficult owing to conflicting opinions and objectives, as well as uncertainty of the outcome. Structured decision making addresses these considerations by identifying realistic fundamental objectives and building achievable management alternatives, within a quantitative modeling framework. The process is driven by participation of stakeholders that represent diverse objectives, policy mandates, and opinions regarding decision alternatives. We applied structured decision making to evaluate reintroduction of Bull Trout Salvelinus confluentus in the lower Pend Oreille River in northeastern Washington State. We engaged stakeholders from Tribal, municipal, county, state and federal agencies to specify fundamental objectives, formulate feasible reintroduction decisions, and conceptualize a modeling framework that includes biological information and stakeholder assumptions. Stakeholders requested iterative decision sets to determine the optimal recipient streams and release strategies. The optimal decision, based on the fundamental objective of maximizing adult abundance at year 10, was artificial propagation of 4500 juvenile Bull Trout coupled with translocation of 25 adult migrants to be reintroduced into a tributary and lake system that produced at least 18% more adult fish relative to alternatives. Sensitivity analyses were robust to the identity of the recipient stream (i.e., Sullivan Lake/Harvey Creek was always the optimal recipient stream) but suggested that maximizing the number of artificially produced juveniles released could produce a similar number of adult Bull Trout as the coupled release strategy. Results also suggested that ensuring fish passage at the Albeni Falls Dam in the mainstem Pend Oreille River could increase the abundance of adult fish. The process followed for this case study can be adapted to similar decisions regarding reintroduction or other translocations of fish in other systems.

Washington↗

USGS2019

We ain’t afraid of no ghosts: Tracking habitat interactions and movement dynamics of ghost PIT tags under differing flow conditions in a sand bed river

The use of PIT tags has rapidly proliferated since their introduction, and new mobile detection methods have been developed. However, the presence of ghost tags (i.e., PIT tags left in the system after a fish dies) creates uncertainty about the status (live or dead) of tags detected. Herein, we describe our raft-based mobile PIT tag antenna system, which was used to evaluate the movements of “seeded tags” (i.e., PIT tags that we placed in the river as ghost tag analogs) and their interactions with habitat features. We deployed 5,000 seeded tags in the San Juan River, a large sand-bed river in the southwestern USA. Total distances moved by PIT tags ranged from 0.8 to 4,124 m, but 75% of movements were less than 100 m. Flow conditions causing the smallest to largest movements were (1) base flows, (2) spring runoff flows, (3) flash flood flows, and (4) a combination of spring runoff and flash flood flows. Based on Ivlev's electivity index, tags were more likely to be detected in riffles than in runs. These findings will help to classify mobile PIT tag detections as ghost tags or live fish, a critical data gap limiting the accurate estimation of demographic rates, population status metrics, and descriptions of the habitat use of fishes.

North American Journal of Fisheries Management↗

USGS2020

Benthic suffocation of invasive lake trout embryos by fish carcasses and sedimentation in Yellowstone Lake

Introduced Lake Trout Salvelinus namaycush threaten native Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri in Yellowstone Lake, Yellowstone National Park, where gill nets have been used to suppress subadult and adult Lake Trout since 1995. However, survival of embryonic and larval life history stages can have profound effects on the population dynamics of Lake Trout. Inducing additional mortality at those stages, especially if used in concert with intensive gillnetting of older fish, could enhance overall suppression efforts. Therefore, we conducted controlled field experiments at Yellowstone Lake to systematically evaluate the effects of sediment deposition and ground Lake Trout carcass deposition on Lake Trout embryos in pre-positioned incubators. Sediment deposition caused dissolved oxygen concentrations to decline below lethal levels for a prolonged overwinter period (92 d). Embryo mortality among overwintering incubators varied from 97.0 ± 5.3% (mean ± SE) at the substrate surface to 100.0 ± 0.0% at 20 cm below the substrate surface. Decomposition of ground carcass material on spawning sites caused dissolved oxygen concentrations to decline to lethal levels (<3.4 mg/L) for about 9 d after biomass application rates of 14 and 28 kg/m 2 in treatment plots. Exposure to ground carcass material resulted in 100.0 ± 0.0% embryo mortality at the substrate surface and within interstices 20 cm below the surface in 14- and 28-kg/m 2 biomass treatments. Embryo mortality was probably caused by hypoxic conditions within substrates in both experiments. The deposition of sediment and ground Lake Trout carcass material on Lake Trout spawning sites in Yellowstone Lake could provide an additional source of mortality in ongoing Lake Trout suppression efforts. These methods may also be beneficial in other systems when incorporated in an integrated pest management approach targeting multiple life history stages of invasive freshwater fish.

Wyoming↗

USGS2022

Occurrence, abundance, movement, and habitat associations of Bonneville Cutthroat Trout in tributaries to Bear Lake, Idaho-Utah

Bonneville Cutthroat Trout (BCT) Oncorhynchus clarkii utah in Bear Lake, Idaho–Utah, is an important endemic and recreational species and plays a vital ecological role in systems throughout the basin. Although the distribution and abundance of BCT have declined due to anthropogenic disturbances, production of wild BCT in Bear Lake has increased over the past decade as a result of extensive habitat improvement in spawning tributaries. The objective of this study was to assess the occurrence, distribution, and out-migration of BCT in tributaries of Bear Lake. Surveys were conducted at 75 stream reaches across three study streams (i.e., St. Charles, Fish Haven, and Swan creeks) during 2019 and 2020. A total of 1,064 BCT was sampled from 55 of 75 total reaches (73%). Total length of BCT varied from 22 to 650 mm, and the average TL was 117 mm (SE = 2.2). Regression models were used to identify abiotic and biotic features associated with BCT distribution, abundance, and probability of out-migration. Regardless of the tributary, elevation was negatively related to BCT occurrence and relative abundance. Other habitat characteristics associated with the presence and abundance of BCT were similar to those of other Cutthroat Trout species. For example, BCT were often associated with large substrates, instream cover, canopy cover, and heterogeneity in several habitat characteristics. The probability of a BCT out-migrating was positively associated with fish length and age but negatively related to distance to Bear Lake and number of downstream irrigation diversions. Results from this study provide critical information on the ecology and early life history characteristics of BCT that can be used to guide additional conservation and management efforts (i.e., removal of nonnative fish species; continued habitat restoration efforts).

Idaho, Utah↗

USGS2023

Conservation decision support for Silver Chub habitat in Lake Erie

Objective Conservation and restoration of aquatic species is difficult, especially for rare species, because their habitats are typically disturbed, obscuring the natural ability of the habitat to support each species. The Lake Erie population of Silver Chub Macrhybopsis storeriana struggles to sustain itself in a habitat disturbed by a wide spectrum of anthropogenic factors. Application of multiple model predictions can provide indications of conservation or restoration opportunities for this species. Methods A combination of models that predict the best potential for Lake Erie habitat to support Silver Chub and the effects of anthropogenic disturbances on that population were used to identify habitat conditions throughout the western aquatic lake unit. Result As many as 76 combinations of best habitat potential and disturbance conditions were present, but the best opportunities occurred in <12% of the study area. Some of the best protection opportunities were farthest offshore, and extensive areas of least disturbed habitat for restoration were near the southern and western shores. The location-specific model predictions provide fine-scale decision support for Silver Chub habitat protection or restoration. Conclusion The approach applied here may help identify compatibilities among species to achieve the desirable fish community for Lake Erie and reconcile conflicting management actions.

Michigan, Ohio, Ontario↗

USGS2015

Effects of water temperature and fish size on predation vulnerability of juvenile humpback chub to rainbow trout and brown trout

Predation on juvenile native fish by introduced Rainbow Trout and Brown Trout is considered a significant threat to the persistence of endangered Humpback Chub Gila cypha in the Colorado River in the Grand Canyon. Diet studies of Rainbow Trout and Brown Trout in Glen and Grand canyons indicate that these species do eat native fish, but impacts are difficult to assess because predation vulnerability is highly variable, depending on prey size, predator size, and the water temperatures under which the predation interactions take place. We conducted laboratory experiments to evaluate how short-term predation vulnerability of juvenile native fish changes in response to fish size and water temperature using captivity-reared Humpback Chub, Bonytail, and Roundtail Chub. Juvenile chub 45–90 mm total length (TL) were exposed to adult Rainbow and Brown trouts at 10, 15, and 20°C to measure predation vulnerability as a function of water temperature and fish size. A 1°C increase in water temperature decreased short-term predation vulnerability of Humpback Chub to Rainbow Trout by about 5%, although the relationship is not linear. Brown Trout were highly piscivorous in the laboratory at any size > 220 mm TL and at all water temperatures we tested. Understanding the effects of predation by trout on endangered Humpback Chub is critical in evaluating management options aimed at preserving native fishes in Grand Canyon National Park.

Transactions of the American Fisheries Society↗

USGS2016

Feeding ecology of native and nonnative salmonids during the expansion of a nonnative apex predator in Yellowstone Lake, Yellowstone National Park

The illegal introduction of Lake Trout Salvelinus namaycush into Yellowstone Lake, Yellowstone National Park, preceded the collapse of the native population of Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri , producing a four-level trophic cascade. The Yellowstone Cutthroat Trout population’s collapse and the coinciding increase in Lake Trout abundance provided a rare opportunity to evaluate the feeding ecology of a native prey species and a nonnative piscivore species after the restructuring of a large lentic ecosystem. We assessed diets, stable isotope signatures, and depth-related CPUE patterns for Yellowstone Cutthroat Trout and Lake Trout during 2011–2013 to evaluate trophic overlap. To evaluate diet shifts related to density, we also compared 2011–2013 diets to those from studies conducted during previous periods with contrasting Yellowstone Cutthroat Trout and Lake Trout CPUEs. We illustrate the complex interactions between predator and prey in a simple assemblage and demonstrate how a nonnative apex predator can alter competitive interactions. The diets of Yellowstone Cutthroat Trout were dominated by zooplankton during a period when the Yellowstone Cutthroat Trout CPUE was high and were dominated by amphipods when the CPUE was reduced. Lake Trout shifted from a diet that was dominated by Yellowstone Cutthroat Trout during the early stages of the invasion to a diet that was dominated by amphipods after Lake Trout abundance had increased and after Yellowstone Cutthroat Trout prey had declined. The shifts in Yellowstone Cutthroat Trout and Lake Trout diets resulted in increased trophic similarity of these species through time due to their shared reliance on benthic amphipods. Yellowstone Cutthroat Trout not only face the threat posed by Lake Trout predation but also face the potential threat of competition with Lake Trout if amphipods are limiting. Our results demonstrate the importance of studying the long-term feeding ecology of fishes in invaded ecosystems.

Wyoming↗

USGS2011

Movement and spawning of American shad transported above dams on the Roanoke River, North Carolina and Virginia

American shad Alosa sapidissima are in decline throughout much of their native range as a result of overfishing, pollution, and habitat alteration in coastal rivers where they spawn. One approach to restoration in regulated rivers is to provide access to historical spawning habitat above dams through a trap-and-transport program. We examined the initial survival, movement patterns, spawning, and downstream passage of sonic-tagged adult American shad transported to reservoir and riverine habitats upstream of hydroelectric dams on the Roanoke River, North Carolina and Virginia, during 2007–2009. Average survival to release in 2007–2008 was 85%, but survival decreased with increasing water temperature. Some tagged fish released in reservoirs migrated upstream to rivers; however, most meandered back and forth within the reservoir. A higher percentage of fish migrated through a smaller (8,215-ha) than a larger (20,234-ha) reservoir, suggesting that the population-level effects of transport may depend on upper basin characteristics. Transported American shad spent little time in upper basin rivers but were there when temperatures were appropriate for spawning. No American shad eggs were collected during weekly plankton sampling in upper basin rivers. The estimated initial survival of sonic-tagged American shad after downstream passage through each dam was 71–100%; however, only 1% of the detected fish migrated downstream through all three dams and many were relocated just upstream of a dam late in the season. Although adult American shad were successfully transported to upstream habitats in the Roanoke River basin, under present conditions transported individuals may have reduced effective fecundity and postspawning survival compared with nontransported fish that spawn in the lower Roanoke River.

North Carolina, Virginia↗

USGS2012

Assessment of freshwater fish assemblages and their habitats in the National Park Service system of the southeastern United States

The southeast region of the United States contains the highest diversity of freshwater fish species in the country: approximately 662 species. Existing protected areas like units of the National Park Service (NPS) should reflect this biodiversity, but there has been no broad-scale assessment. We compiled several data sets identifying native freshwater fish species distributions in and surrounding NPS units and threats to those resources. Focusing on the 26 NPS units containing only freshwater fish species, we documented 288 species within NPS boundaries. The largest NPS units tended to have the most fish species and aquatic habitat but also the greatest amount of alteration. Increasing rates of urbanization, declines in percentage agriculture land cover, and increased density of road-stream crossings in surrounding watersheds were good predictors of nonindigenous species presence within NPS unit boundaries. These results help document the role of NPS units in conserving freshwater fish diversity and, in this region, suggest that measures aimed at controlling urbanization in the adjacent watersheds could affect the diversity of freshwater fish communities in these units.

Fisheries↗

USGS2018

Post‐release predation mortality of age‐0 hatchery‐reared Chinook salmon from non‐native smallmouth bass in the Snake River

Release of age‐0 hatchery‐reared fall Chinook salmon, Oncorhynchus tshawytscha (Walbaum), in the Snake River resulted in up to 30‐fold increases in salmon consumption by non‐native smallmouth bass, Micropterus dolomieu Lacepѐde. In an upper river reach, smallmouth bass fed intensively during a release in May, but Chinook salmon consumption returned to pre‐release levels within 1–2 days as hatchery‐reared fish quickly emigrated downstream. The predation response during a June release located farther downstream was dissimilar. Chinook salmon consumption increased to a lesser extent (11‐fold), lasted several days (~4) and no changes in feeding intensity were evident. Estimated numbers of age‐0 hatchery‐reared Chinook salmon lost to short‐term predation varied by year and study reach and ranged from 12,007 (6.03% of those released) to 210,580 (14.6% of those released) fish. Short‐term, intense feeding by smallmouth bass can contribute significantly to mortality of hatchery‐reared fish and should be considered when supplementing populations with hatchery juveniles.

Idaho, Washington↗