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USGS2024

Guide to per- and polyfluoroalkyl substances (PFAS) sampling within Natural Resource Damage Assessment and Restoration

Per- and polyfluoroalkyl substances (PFAS) are synthetic chemicals with a nondegradable fluorinated carbon backbone that have been incorporated in countless industrial and commercial applications. Because PFAS are nondegradable, they have been detected in all environmental media, indicating extensive global contamination. The unique physiochemical properties of PFAS and their complex interactions with environmental matrices create a great challenge for researchers when selecting site-specific sample matrices, sampling logistics, various analytical methods, and data interpretation. The widespread contamination and the potential toxicity of PFAS to human and environmental health have resulted in the proposed designation of two commonly used PFAS as hazardous substances, which may prompt new requirements for reporting, regulatory action, and site cleanup. For researchers involved in natural resource damage assessment efforts, understanding the multifaceted dynamics of the environmental fate and transport of PFAS will be essential for appropriate sample collections, analyses, and data interpretation. This guide aims to provide fundamental concepts and considerations involved with environmental sampling for PFAS during site assessments.

Open-File Report↗

USGS2017

Platinum-group elements

The platinum-group elements (PGEs)—platinum, palladium, rhodium, ruthenium, iridium, and osmium—are metals that have similar physical and chemical properties and tend to occur together in nature. PGEs are indispensable to many industrial applications but are mined in only a few places. The availability and accessibility of PGEs could be disrupted by economic, environmental, political, and social events. The United States net import reliance as a percentage of apparent consumption is about 90 percent. PGEs have many industrial applications. They are used in catalytic converters to reduce carbon monoxide, hydrocarbon, and nitrous oxide emissions in automobile exhaust. The chemical industry requires platinum or platinum-rhodium alloys to manufacture nitric oxide, which is the raw material used to manufacture explosives, fertilizers, and nitric acid. In the petrochemical industry, platinum-supported catalysts are needed to refine crude oil and to produce aromatic compounds and high-octane gasoline. Alloys of PGEs are exceptionally hard and durable, making them the best known coating for industrial crucibles used in the manufacture of chemicals and synthetic materials. PGEs are used by the glass manufacturing industry in the production of fiberglass and flat-panel and liquid crystal displays. In the electronics industry, PGEs are used in computer hard disks, hybridized integrated circuits, and multilayer ceramic capacitors. Aside from their industrial applications, PGEs are used in such other fields as health, consumer goods, and finance. Platinum, for example, is used in medical implants, such as pacemakers, and PGEs are used in cancer-fighting drugs. Platinum alloys are an ideal choice for jewelry because of their white color, strength, and resistance to tarnish. Platinum, palladium, and rhodium in the form of coins and bars are also used as investment commodities, and various financial instruments based on the value of these PGEs are traded on major exchanges. PGEs are among the rarest metals; Earth’s upper crust contains only about 0.0005 part per million (ppm) platinum. Today, the average grade of PGEs in ores that are mined primarily for their PGE concentrations varies from 5 to 15 ppm, although the concentration of PGEs in hand-picked ore specimens may range from tens to hundreds of parts per million. More than 100 different minerals have one of the PGEs as an essential component. PGE minerals occur as native metals. They also occur as compounds with other transition metals (copper, iron, mercury, nickel, and silver), post-transition metals (bismuth, lead, and tin), metalloids (antimony, arsenic, and tellurium), and nonmetals (selenium and sulfur). From 1900 to 2011, approximately 14,200 metric tons of PGEs was produced, and roughly 95 percent of that production (13,500 metric tons) took place between 1960 and 2011. The breakdown of production by country shows that, since 1900, about 90 percent of the production came from South Africa and Russia. The secondary supply of platinum, palladium, and rhodium is obtained through the recycling of catalytic converters from end-of-life vehicles, jewelry, and electronic equipment. Recycled platinum, palladium, and rhodium provide a significant proportion of the world’s total supply; these secondary sources are sufficient to close the gap between world mine production and consumption. Exploration and mining companies report resources of about 104,000 metric tons of PGEs (including minor amounts of gold) in mineral deposits around the world that could be developed. For PGEs, almost all the reported production and identified resources are associated with deposits in three geologic features—the Bushveld Complex, which is a layered mafic-to-ultramafic intrusion in South Africa; the Great Dyke, which is a layered mafic-to-ultramafic intrusion in Zimbabwe; and sill-like intrusions associated with flood basalts in the Noril’sk-Talnakh area of Russia. The metallic forms of PGEs are generally considered to be inert. PGEs pose a risk to human health only in cases where individuals are occupationally exposed to synthetic PGE compounds, especially workers in precious-metal refineries. In the natural environment, background PGE concentrations are low in water, sediment, soil, and plants. Anthropogenic sources of PGEs in the environment include catalytic converters used in modern automobiles, platinum-based chemotherapy drugs, and smelter emissions. The abundance of sulfide minerals defines the environmental and geologic characteristics of PGE-enriched magmatic sulfide deposits; those deposits with the highest amount of sulfide minerals could have the highest environmental impact. Acid rock drainage from reef-type and contact-type deposits is unlikely because the ores and their host rocks contain low proportions of sulfide minerals. For some conduit-type orebodies with massive ores, mineral-processing techniques separate and produce concentrates of copper-, iron-, and nickel-bearing sulfide minerals; those with copper and nickel are processed to extract metal, but the iron-sulfide minerals, mainly pyrrhotite, are discarded as waste. This results in waste material with a high acid-generating potential. The most significant primary source of PGEs in the United States is a deposit in the Stillwater Complex, which is a layered igneous intrusion in Montana. Approximately 305 metric tons of platinum and palladium have been mined from the Stillwater Complex deposit since 1986. Exploration and development drilling indicate that another 2,200 metric tons are present. Mining has progressed to depths of 1,800 meters below the surface, but the bottom of the ore deposit has not been reached; geologic estimates suggest that another 1,000 to 6,200 metric tons of PGEs could be present at depth. In the future, PGEs may be mined from deposits found near the base of the Duluth Complex, which is a group of igneous intrusions in Minnesota.

Professional Paper↗

USGS2005

Public access management as an adaptive wildlife management tool

Wildlife populations across the United States are benefiting from improved wildlife management techniques. However, these benefits also create new challenges including overpopulation, disease, increased winter kill, and forage degradation. These issues have become the challenges for natural resource managers and landowners. Specifically, elk (Cervus elaphus) populations in the Gunnison River Valley of Colorado are growing and causing increased resource damage on public and private lands. On public lands elk threaten sage grouse habitat and compete with domestic livestock for available forage; on private lands they diminish available livestock forage. Management of elk and elk habitat in this area is a shared responsibility of the NPS (Black Canyon of the Gunnison National Park and Curecanti National Recreation Area), BLM (Uncompahgre Field Office), USFS (Gunnison National Forest), and the CDOW (Colorado Division of Wildlife). All of these agencies participate in this research and adaptive management project. One key issue in the Black Mesa – Black Canyon area is the interaction between motorized vehicles and. The working hypothesis for this study is that early season elk movement onto private lands and the National Park is precipitated by increased use of Off Highway Vehicles (OHV’s). Data on intensity of motorized use is extremely limited. In this study, we monitor intensity of motorized vehicle and trail use on elk movements and habitat usage and analyze interactions. If management agencies decide to alter accessibility, we will monitor wildlife responses to changes in the human-use regime. This provides a unique opportunity for adaptive management experimentation based on coordinated research and monitoring. The products from this project will provide natural resource managers across the nation with tools and information to better meet these resource challenges.

Open-File Report↗

USGS2025

Microbiome data management in action workshop: Atlanta, GA, USA, June 12–13, 2024

Microbiome research is revolutionizing human and environmental health, but the value and reuse of microbiome data are significantly hampered by the limited development and adoption of data standards. While several ongoing efforts are aimed at improving microbiome data management, significant gaps still remain in terms of defining and promoting adoption of consensus standards for these datasets. The Strengthening the Organization and Reporting of Microbiome Studies (STORMS) guidelines for human microbiome research have been endorsed and successfully utilized by many research organizations, publishers, and funding agencies, and have been recognized as a consensus community standard. No equivalent effort has occurred for environmental, synthetic, and non-human host-associated microbiomes. To address this growing need within the microbiome research community, we convened the Microbiome Data Management in Action Workshop (June 12–13, 2024, in Atlanta, GA, USA), to bring together key decision makers in microbiome science including researchers, publishers, funders, and data repositories. The 50 attendees, representing the diverse and interdisciplinary nature of microbiome research, discussed recent progress and challenges, and brainstormed actionable recommendations and paths forward for coordinated environmental microbiome data management and the modifications necessary for the STORMS guidelines to be applied to environmental, non-human host, and synthetic microbiomes. The outcomes of this workshop will form the basis of a formalized data management roadmap to be implemented across the field. These best practices will drive scientific innovation now and in years to come as these data continue to be used not only in targeted reanalyses but in large-scale models and machine learning efforts.

Environmental Microbiome↗

USGS2019

Natural resource management decision-making under climate uncertainty: Building social-ecological resilience in southwestern Colorado

The goal of this project was to facilitate climate change adaptation that contributes to social-ecological resilience, ecosystem and species conservation, and sustainable human communities in southwestern Colorado. The team developed and piloted integrated adaptation planning tools and principles that merge the strengths of the iterative scenario process, the Adaptation for Conservation Targets (ACT) planning framework, institutional analysis, and climate modeling. These tools and principles generated practical strategies and scientific knowledge to advance climate change adaptation in both the Gunnison River Basin and San Juan River Basin and, potentially, other landscapes. A key objective of this project was to work with decision-makers to develop social-ecological adaptation strategies and coordinate actions to reduce the impacts of a changing climate on nature and people. To accomplish this, the project blended science (biophysical and social) and participatory approaches to integrate expert knowledge, land management decision making, and local needs. These adaptation strategies and their creation process were documented by the project team to assist communities and scientists elsewhere who are grappling with the challenges posed by climate change.

Colorado↗

USGS2008

Quality of Shallow Ground Water in Three Areas of Unsewered Low-Density Development in Wyoming and Montana, 2001

The quality of shallow ground water underlying unsewered low-density development outside of Sheridan and Lander, Wyo., and Red Lodge, Mont., was evaluated. In 2001, 29 wells (10 each in Sheridan and Lander and 9 in Red Lodge) were installed at or near the water table and sampled for a wide variety of constituents to identify potential effects of human activities on shallow ground-water quality resulting from development on the land surface. All wells were completed in unconfined aquifers in unconsolidated deposits of Quaternary age with shallow water tables (less than 50 feet below land surface). Land use and land cover was mapped in detail within a 500-meter radius surrounding each well, and potential contaminant sources were inventoried within the radii to identify human activities that may affect shallow ground-water quality. This U.S. Geological Survey National Water-Quality Assessment ground-water study was conducted to examine the effects of unsewered low-density development that often surrounds cities and towns of many different sizes in the western United States?a type of development that often is informally referred to as ?exurban? or ?rural ranchette? development. This type of development has both urban and rural characteristics. Residents in these developments typically rely on a private ground-water well for domestic water supply and a private septic system for sanitary waste disposal. Although the quality of shallow ground water generally was suitable for domestic or other uses without treatment, some inorganic constituents were detected infrequently in ground water in the three study areas at concentrations larger than U.S. Environmental Protection Agency drinking-water standards or proposed standards. Natural factors such as geology, aquifer properties, and ground-water recharge rates likely influence most concentrations of these constituents. These inorganic constituents generally occur naturally in the study areas and were more likely to limit suitability of water for drinking or other intended uses rather than any constituents suspected of being introduced as a result of human activities. Effects of human activities associated with low-density development, such as septic systems; fertilizer and pesticide use on pastures, lawns and gardens; manure from horses, cattle, and pets; and increases in road construction and vehicular traffic, were minimal at the time of sampling (2001) but were apparent in the presence of a few types of constituents in shallow ground water. Concentrations of nitrate generally were less than a national background level (1.1 milligrams per liter) assumed to indicate effects from human activities. Total coliform bacteria were detected infrequently (in samples from three wells), and Escherichia coli were not detected in samples from a subset of wells. Trace concentrations of methylene blue active substances (ingredients in laundry detergents) were detected at concentrations slightly greater than laboratory reporting levels in samples from 11 wells, but it is unclear if the detections are indicative of natural sources or possible aquifer contamination from septic-tank effluent. Pesticides were detected in both the Sheridan and Lander, Wyo., study areas. Volatile organic compounds were detected very infrequently in all three study areas. Most pesticides and volatile organic compounds were found in water from a few wells in each study area, and commonly as mixtures. The primary exception to this generalization was the relatively widespread detection of the pesticide prometon at trace levels in the Sheridan and Lander study areas. Concentrations of pesticides and volatile organic compounds generally were small and always were smaller than applicable drinking-water standards. Detections of all constituents indicating possible human effects on shallow ground-water quality were consistent with overlying land use mapped during the study, and potential sources of contamination inventoried du

Scientific Investigations Report↗

USGS2023

Effects of environment and metacommunity delineation on multiple dimensions of stream fish beta diversity

Introduction: Beta diversity represents changes in community composition among locations across a landscape. While the effects of human activities on beta diversity are becoming clearer, few studies have considered human effects on the three dimensions of beta diversity: taxonomic, functional, and phylogenetic. Including anthropogenic factors and multiple dimensions of biodiversity may explain additional variation in stream fish beta diversity, providing new insight into how metacommunities are structured within different spatial delineations. Methods: In this study, we used a 350 site stream fish abundance dataset from South Carolina, United States to quantify beta diversity explainable by spatial, natural environmental, and anthropogenic variables. We investigated three spatial delineations: (1) a single whole-state metacommunity delineated by political boundaries, (2) two metacommunities delineated by a natural geomorphic break separating uplands from lowlands, and (3) four metacommunities delineated by natural watershed boundaries. Within each metacommunity we calculated taxonomic, functional, and phylogenetic beta diversity and used variation partitioning to quantify spatial, natural environmental, and anthropogenic contributions to variations in beta diversity. Results: We explained 25–81% of the variation in stream fish beta diversity. The importance of these three factors in structuring metacommunities differed among the diversity dimensions, providing complementary perspectives on the processes shaping beta diversity in fish communities. The effect of spatial, natural environmental, and anthropogenic factors varied among the spatial delineations, which indicate conclusions drawn from variation partitioning may depend on the spatial delineation chosen by researchers. Discussion: Our study highlights the importance of considering human effects on metacommunity structure, quantifying multiple dimensions of beta diversity, and careful consideration of user-defined metacommunity boundaries in beta diversity analyses.

South Carolina↗

USGS2025

Geochemical processes related to mined, milled, or natural metal deposits in a rapidly changing global environment

The demand for metals and raw materials, such as nickel and copper, has been projected to expand in the coming decades, driven by the global energy transition, the need for green technologies, and expanding infrastructure. Consequently, the increasing extraction and production of mining waste can have adverse impacts on surrounding environments and human health. The aim of this thematic collection is to fill critical knowledge gaps in the present-day cycles of metal(loid)s from source to larger sinks, and the effect of environmental management, anthropogenic development, and climate change. Altogether, the studies have been conducted in different natural settings around the world and comprise investigations in laterites, a soil-medicinal plant system, watersheds, and banded iron formations, among others. The geochemical applications in tracing mineralization, its secondary products, and/or potential impact on the immediate environment are highly diverse with applied tools ranging from isotope tracers to major and trace element systematics. Particularly the use of rare earth elements, their patterns and anomalies are methods employed by several studies in this collection. We summarize the findings to offer a potential future direction for the use of geochemical tracing techniques in resource exploration in the context of climate change and environmental challenges.

Geochemistry: Exploration, Environment, Analysis↗

USGS2020

Compounds of emerging concern detected in water samples from potable water and wastewater treatment plants and detected in water and bed-sediment samples from sites on the Trinity River, Dallas, Texas, 2009–13

The population in the Dallas-Fort Worth metropolitan area in northern Texas is rapidly growing, resulting in a rapid increase in the demand for potable water and an increase in the discharge of wastewater treatment plant effluent. An assessment of compounds of emerging concern (CECs) in samples collected at potable water and wastewater treatment plants in Dallas and downstream from Dallas in the Trinity River was completed by the U.S. Geological Survey in cooperation with the City of Dallas, Dallas Water Utilities. CECs are synthetic or naturally occurring chemicals that are not commonly monitored in the environment but can enter the environment and cause known or suspected adverse ecological or human health effects. CECs can enter the environment through nonpoint sources (for example, runoff) and point sources (for example, concentrated animal feeding operations and treated-effluent discharge from wastewater treatment plants), which can increase concentrations of CECs especially in highly populated areas. CECs include pharmaceuticals (prescription and nonprescription), steroidal hormones, stanols, sterols, detergents and detergent metabolites (hereinafter referred to as “detergents”), personal-use products, pesticides, polycyclic aromatic hydrocarbons (PAHs), flame retardants, plasticizers, and other organic compounds used in everyday domestic, agricultural, and industrial applications. The release of CECs to the environment went largely unrecognized until relatively recently. Increased loading of certain CECs to the environment, combined with advancements in laboratory analysis methods that resulted in appreciably lower detection levels, brought greater attention to the release of CECs. In addition, synthesis of new chemicals or changes in use and disposal of existing chemicals can create new sources of CECs. Some CECs are endocrine disrupting compounds (EDCs), which can elicit adverse effects on development, behavior, and reproduction of wildlife and can cause dysfunction of human and wildlife endocrine (hormone) systems. Results of studies in the United States and Europe indicate that CECs, their metabolites, and industrial, agricultural, and household wastewater products are present in the aquatic environment, water treatment plants, and septic systems. CECs, especially pharmaceuticals, are of interest because of their persistence, widespread use, and potential to cause adverse effects in humans and nontargeted organisms. There is also concern that some CECs and EDCs resist degradation of water treatment processes at potable water treatment plants (PWTPs) and wastewater treatment plants (WWTPs) and that treated-effluent discharge could contain compounds that negatively affect biota living in receiving waters. Therefore, CECs and EDCs are more likely to be detected in environmental samples collected near areas of high population density where treated effluent from WWTPs can contribute substantially to receiving waters. The U.S. Geological Survey, in cooperation with the City of Dallas, Dallas Water Utilities, evaluated the occurrence and concentrations of selected CECs in samples collected at PWTPs and WWTPs in Dallas and downstream from the Dallas-Fort Worth metropolitan area in the Trinity River, Texas, from August 2009 to December 2013. Water samples were collected at three PWTP sites, two WWTP sites, and five study sites on the Trinity River; all sites where samples were collected were in or downstream from Dallas. These water samples were analyzed for 120 CECs, including human-health pharmaceuticals (prescription and nonprescription), antibiotics, steroidal hormones, stanols, sterols, detergents, personal-use products (flavors and fragrances), pesticides and repellents, industrial wastewater compounds, disinfection compounds, PAHs, flame retardants, and plasticizers. Additionally, bed-sediment samples were collected at each of the five Trinity River sites. The bed-sediment samples were analyzed for 57 CECs. In general, the water treatment processes at PWTPs and WWTPs were effective at reducing detections and concentrations of CECs to undetectable levels or transforming the compounds into degradates that were not analyzed. There were 14 and 73 CECs detected in raw water and in untreated-influent water at PWTPs and WWTPs, respectively. Of these, 11 of the 14 CECs detected in raw-water samples and 44 of the 73 CECs detected in untreated-influent samples were not detected in finished water or in treated-effluent water samples, respectively, indicating that these compounds were removed or degraded to compounds that were not analyzed. Some CECs, however, are resistant to degradation and were detected in untreated and treated water at PWTPs and at WWTPs. The three CECs detected at PWTPs in raw-water and finished-water samples were tris(dichloroisopropyl)phosphate, benzophenone, and methyl salicylate. At WWTPs, 29 CECs were detected, including carbamazepine, sulfamethoxazole, 4-androstene-3,17- dione , 3-beta-coprostanol, acetyl-hexamethyl-tetrahydronaphthalene (AHTN), hexahydro-hexamethyl-cyclopenta-benzopyran (HHCB), 1,4-dichlorobenzene, tribromomethane, benzophenone, and tris(dichloroisopropyl)phosphate, in untreated and treated water, indicating that treatment processes likely did not remove or degrade these compounds. Of the 23 CECs detected in stream-water samples collected at 5 sites on the Trinity River in or near Dallas, 10 CECs (carbamazepine, sulfamethoxazole, caffeine, 3-beta-coprostanol, cholesterol, HHCB, benzophenone, triethyl citrate, tributyl phosphate, and tris(dichloroisopropyl)phosphate) were detected at all 5 sites. The 10 CECs detected in water samples collected at all 5 sites on the Trinity River were also detected in treated-effluent water at WWTPs. Eleven of the 57 targeted CECs were detected in bed-sediment samples collected at study sites on the Trinity River. Of these 11 CECs, only 2 (beta-sitosterol and cholesterol) were detected in bed-sediment samples at all 5 sites on the Trinity River. Nine of these 11 CECs were not detected in any water-column sample, likely because of the strong hydrophobic characteristics of these compounds. Results from water treatment plants indicate that the water treatment process is less effective for removing or degrading compounds that are engineered to be resistant to degradation. These results also indicate the presence of CECs and EDCs at locations upstream from PWTPs in Dallas. Results from Trinity River main-stem sites indicate that some compounds are naturally attenuated during transport, but a few are persistent throughout the study reach. Many CECs and EDCs are hydrophobic and were only detected in bed sediment, indicating multiple pathways through which CECs can persist in the environment. In general, concentrations of CECs in the Dallas-Fort Worth metropolitan area were similar to those found in metropolitan areas nationwide.

Texas↗

USGS2015

Human activities and climate variability drive fast-paced change across the world's estuarine-coastal ecosystems

Time series of environmental measurements are essential for detecting, measuring and understanding changes in the Earth system and its biological communities. Observational series have accumulated over the past 2–5 decades from measurements across the world's estuaries, bays, lagoons, inland seas and shelf waters influenced by runoff. We synthesize information contained in these time series to develop a global view of changes occurring in marine systems influenced by connectivity to land. Our review is organized around four themes: (i) human activities as drivers of change; (ii) variability of the climate system as a driver of change; (iii) successes, disappointments and challenges of managing change at the sea-land interface; and (iv) discoveries made from observations over time. Multidecadal time series reveal that many of the world's estuarine–coastal ecosystems are in a continuing state of change, and the pace of change is faster than we could have imagined a decade ago. Some have been transformed into novel ecosystems with habitats, biogeochemistry and biological communities outside the natural range of variability. Change takes many forms including linear and nonlinear trends, abrupt state changes and oscillations. The challenge of managing change is daunting in the coastal zone where diverse human pressures are concentrated and intersect with different responses to climate variability over land and over ocean basins. The pace of change in estuarine–coastal ecosystems will likely accelerate as the human population and economies continue to grow and as global climate change accelerates. Wise stewardship of the resources upon which we depend is critically dependent upon a continuing flow of information from observations to measure, understand and anticipate future changes along the world's coastlines.

Global Change Biology↗

USGS2017

Impacts of coastal land use and shoreline armoring on estuarine ecosystems: An introduction to a special issue

The nearshore land-water interface is an important ecological zone that faces anthropogenic pressure from development in coastal regions throughout the world. Coastal waters and estuaries like Chesapeake Bay receive and process land discharges loaded with anthropogenic nutrients and other pollutants that cause eutrophication, hypoxia, and other damage to shallow-water ecosystems. In addition, shorelines are increasingly armored with bulkhead (seawall), riprap, and other structures to protect human infrastructure against the threats of sea-level rise, storm surge, and erosion. Armoring can further influence estuarine and nearshore marine ecosystem functions by degrading water quality, spreading invasive species, and destroying ecologically valuable habitat. These detrimental effects on ecosystem function have ramifications for ecologically and economically important flora and fauna. This special issue of Estuaries and Coasts explores the interacting effects of coastal land use and shoreline armoring on estuarine and coastal marine ecosystems. The majority of papers focus on the Chesapeake Bay region, USA, where 50 major tributaries and an extensive watershed (~ 167,000 km 2 ), provide an ideal model to examine the impacts of human activities at scales ranging from the local shoreline to the entire watershed. The papers consider the influence of watershed land use and natural versus armored shorelines on ecosystem properties and processes as well as on key natural resources.

Estuaries and Coasts↗

USGS2006

The western pond turtle (Clemmys marmorata) in the Mojave River, California, USA: Highly adapted survivor or tenuous relict?

Aspects of the ecology of populations of the western pond turtle Clemmys marmorata were investigated in the Mojave River of the central Mojave Desert, California, U.S.A. One population occupied man-made ponds and the other occurred in natural ponds in the flood plain of the Mojave River. Both habitats are severely degraded as a result of ground water depletion from human activities along the river and one is infested with the exotic shrub saltcedar Tamarix ramosissima . Mean female carapace length (CL) was significantly greater (14.4 cm) than that of males (13.7 cm). Live juveniles were not detected during the period of study. Shelled eggs were visible in X-radiographs from 26 May to 14 July. Mean clutch size was 4.46 and ranged from 3 to 6 eggs. Clutch size did not vary between 1998 and 1999 but was significantly correlated with CL for both years combined, increasing at the rate of 0.548 eggs/cm CL. Gravid female CL ranged from 13.3–16.0 cm. Some females nested in both years. Mean X-ray egg width (21.8 mm) was not significantly correlated with CL or clutch size. X-ray egg width differed more among clutches than within, whether including CL as a co-variate or not. Nesting migrations occurred from 6 June to 8 July with minimum round trip distances ranging from 17.5–585 m with a mean of 195 m. Mean estimated time of departure as measured at the drift fence was 18:13. Most females returned to the ponds in the early morning. Nesting migrations required females to be out of the water for estimated periods of 0.83 to 86 h. The destination of nesting females was typically fluvial sand bars in the channel of the dry riverbed. Overall, the ecology of C. marmorata in the Mojave River is very similar to that reported for populations in less severe habitats along the west coast of the United States. Notable exceptions include long nesting migrations to sandbars in the dry river channel, a possible result of human modifications to the environment, and an apparent lack of terrestrial overwintering behaviour in Mojave River populations. The general similarity of desert and coastal populations is possibly a reflection of their recent geographic separation. Overall, populations in the Mojave River exhibit few obvious adaptations to living in the desert and are considered to be tenuous relicts of the Pleistocene. The small size and tenuous status of these populations suggests that immediate conservation action is needed, including establishment of satellite populations as a hedge against extirpation.

California↗

USGS2015

Will a warmer and wetter future cause extinction of native Hawaiian forest birds?

Isolation of the Hawaiian archipelago produced a highly endemic and unique avifauna. Avian malaria ( Plasmodium relictum ), an introduced mosquito-borne pathogen, is a primary cause of extinctions and declines of these endemic honeycreepers. Our research assesses how global climate change will affect future malaria risk and native bird populations. We used an epidemiological model to evaluate future bird-mosquito-malaria dynamics in response to alternative climate projections from the Coupled Model Intercomparison Project (CMIP). Climate changes during the second half of the century accelerate malaria transmission and cause a dramatic decline in bird abundance. Different temperature and precipitation patterns produce divergent trajectories where native birds persist with low malaria infection under a warmer and dryer projection (RCP4.5), but suffer high malaria infection and severe reductions under hot and dry (RCP8.5) or warm and wet (A1B) futures. We conclude that future global climate change will cause significant decreases in the abundance and diversity of remaining Hawaiian bird communities. Because these effects appear unlikely before mid-century, natural resource managers have time to implement conservation strategies to protect this unique avifauna from further decimation. Similar climatic drivers for avian and human malaria suggest that mitigation strategies for Hawai'i have broad application to human health.

Hawai'i↗

USGS2022

Physics-guided recurrent neural networks for predicting lake water temperature

This chapter presents a physics-guided recurrent neural network model (PGRNN) for predicting water temperature in lake systems. Standard machine learning (ML) methods, especially deep learning models, often require a large amount of labeled training samples, which are often not available in scientific problems due to the substantial human labor and material costs associated with data collection. ML models have found tremendous success in several commercial applications, e.g., computer vision and natural language processing. The chapter presents PGRNN as a general framework for modeling physical processes in engineering and environmental systems. The proposed PGRNN explicitly incorporates physical laws such as energy conservation or mass conservation. In particular, researchers started pursing this direction by using residual modeling, where an ML model is learned to predict the errors, or residuals, made by a physics-based model. Advanced ML models, especially deep learning models, often require a large amount of training data for tuning model parameters.

Book chapter↗

USGS2024

Induced seismicity strategic vision

Executive Summary The U.S. Geological Survey has a long history of contributions to the understanding and resolution of various scientific questions related to earthquakes associated with human activities, referred to as induced seismicity. Work started with the Rocky Mountain Arsenal studies in the 1960’s (Healy and others, 1968) when it was first discovered that fluid waste-disposal operations can cause earthquakes. U.S. Geological Survey work on induced seismicity continued in the intervening years but expanded dramatically in the early 2010s. Disposal of large volumes of wastewater, a byproduct of oil and gas production, into the subsurface caused an exponential increase in earthquakes in the central United States, including earthquakes that caused damage to buildings and infrastructure in nearby communities. Established in 2012 within the Earthquake Hazards Program (EHP), the Induced Seismicity Project (ISP) examines earthquakes that are induced by human activities to assess and mitigate the hazards associated with induced earthquakes as well as understand the conditions and processes controlling induced and natural earthquake generation and recurrence. The ISP examines instances of suspected induced earthquakes, in real-time and retrospectively, to assess the probabilistic hazard and investigate possibilities for reducing that hazard, something currently not possible with natural earthquake activity. The ISP has many synergies with work across multiple areas of EHP, including earthquake monitoring, hazard mitigation, and fundamental research into earthquake processes. The overarching questions that guided the development of our research strategies and approaches are as follows: How can seismicity that is induced by industrial activities be better distinguished from natural processes, particularly in regions with higher rates of natural seismicity? Can faults that may be at increased hazard for induced seismicity be identified based on existing fault structures, past earthquake activity, local stress conditions, or other information? What geologic and operational conditions control the occurrence, spatial and temporal evolution, maximum magnitude, ground shaking, and other characteristics of induced seismic sequences? What roles do surface and subsurface deformation, aseismic slip, and other processes play in the occurrence of injection-induced earthquakes? How can induced seismicity be better forecasted to support the Nation’s energy production and climate mitigation goals while limiting related earthquake hazards? In this report, background on induced seismicity and an overview of the state of knowledge is provided in three topical task areas: (1) oil and gas, (2) geothermal, and (3) geologic CO2 sequestration. This report then presents the EHP’s goals, strategies, and approaches—primarily focused on work in the ISP—for understanding the conditions that lead to induced seismicity, mitigating the associated hazards, and assisting the Nation in meeting its future needs in energy production and mitigation of climate change. Finally, the key limitations and opportunities for innovation are outlined at the end of the report.

Circular↗

USGS2015

Methods for evaluating potential sources of chloride in surface waters and groundwaters of the conterminous United States

Chloride exists as a major ion in most natural waters, but many anthropogenic sources are increasing concentrations of chloride in many receiving waters. Although natural concentrations in continental waters can be as high as 200,000 milligrams per liter, chloride concentrations that are suitable for freshwater ecology, human consumption, and agricultural and industrial water uses commonly are on the order of 10 to 1,000 milligrams per liter. “Road salt” frequently is identified as the sole source of anthropogenic chloride, but only about 30 percent of the salt consumed and released to the environment is used for deicing. Furthermore, several studies in Southern States where the use of deicing salt is minimal also show anthropogenic chloride in rising concentrations and in strong correlation to imperviousness and road density. This is because imperviousness and road density also are strongly correlated to population density. The term “road salt” is a misnomer because deicers applied to parking lots, sidewalks, and driveways can be a substantial source of chloride in some catchments because these land covers are comparable to roadways as a percentage of the total impervious area and commonly receive higher salt application rates than some roadways. Other sources of anthropogenic chloride include wastewater, dust control on unpaved roads, fertilizer, animal waste, irrigation, aquaculture, energy production wastes, and landfill leachates. The assumption that rising chloride concentrations in surface water or groundwater is indicative of contamination by deicing chemicals rather than one or more other potential sources may preclude the identification of toxic, carcinogenic, mutagenic, or endocrine-disrupting contaminants that are associated with many sources of elevated chloride concentrations. Once the sources of anthropogenic chloride in an area of interest have been identified and measured, water and solute budgets can be estimated to guide decisionmakers to identify and apply potential mitigation measures that can reduce the problem. Scientists, engineers, regulators, and decisionmakers need information about potential sources of chloride, water and solute budgets, and methods for collecting water-quality data to help identify potential sources. This information is needed to evaluate potential sources of chloride in areas where chloride may have adverse ecological effects or may degrade water supplies used for drinking water, agriculture, or industry. Knowledge of potential sources will help decisionmakers identify the best mitigation measures to reduce the total background chloride load, thereby reducing the potential for water-quality exceedances that occur because of superposition on rising background concentrations. Also, knowledge of potential sources may help decisionmakers identify the potential for the presence of contaminants that have toxic, carcinogenic, mutagenic, or endocrine-disrupting effects at concentrations that are lower by orders of magnitude than the chloride concentrations in the source water. This report is a comprehensive synthesis of relevant information, but it is not the result of an exhaustive search for literature on each topic. The potential adverse effects of chloride on infrastructure and the environment are not discussed in this report because these issues have been extensively documented elsewhere.

Open-File Report↗

USGS2023

Gulf Islands National Seashore regional sediment budget research and data needs—Workshop series summary

Executive Summary The National Park Service (NPS), in collaboration with the U.S. Geological Survey (USGS), recognizes the need to quantify the sediment budget of the barrier islands within the Gulf Islands National Seashore (GINS) to understand the coastal processes affecting island resiliency. To achieve this goal, identifying and quantifying the physical parameters that drive long-term change is necessary to model the processes that are both generative and terminal in island evolution and capture island response to long-term human alteration and climatic patterns. For example, measuring change across periods of storminess is more effective at assessing island resiliency than measuring change resulting from a single storm impact. Understanding changes to the physical environment over time is key to successfully predicting island responses to future storm impacts, human alteration, and sea-level rise and is necessary for effective decision making and management response. Yet, the diversity of factors affecting natural and cultural resources necessitates a strategic approach to data collection priorities that can inform sediment budget quantification and integrated resource management. This study sought to advance sediment budget modeling efforts by conducting a “Needs Assessment Workshop” at the GINS. The purpose of the workshop was to identify and prioritize the specific research and data needs regarding the sediment budget at the GINS that can enhance the NPS efforts to conserve the islands’ natural resources, cultural resources, and the facilities and infrastructure that support both conservation and visitor use of those resources. This effort explored two research questions: (1) “what research and data needs exist for the sediment budget at Gulf Islands National Seashore” (research question 1) and (2) “how can research to address these needs capitalize on regional partnerships to advance natural and cultural resource conservation at Gulf Islands National Seashore” (research question 2)? The workshop was conducted virtually in a two-part, two-day series. The workshop series was organized by researchers from North Carolina State University in collaboration with NPS and USGS staff and was facilitated by National Oceanographic and Atmospheric Administration staff. The workshop series (two paired, sequential, partial-day workshops) addressed two target audiences: (1) NPS and USGS staff (April workshop) and (2) regional Federal, State, county, and nongovernmental organization staff, including NPS and USGS staff (May workshop). A total of four workshop sessions were held, comprising two sessions with each target audience. The workshop series intended to identify sediment management research and data needs that could enhance natural and cultural resource stewardship at the GINS. One objective was to share information about regional sediment transport and management, available sediment management plans, and predictive modeling capabilities, including geomorphologic and hydrodynamic predictive models. This information was shared through a series of presentations by park managers and NPS and USGS researchers that identified park issues and available capabilities and data. The second objective was to elicit research and data needs, with a primary goal of assessing the importance and urgency of the identified needs. This assessment was partly determined by requesting that the workshop participants identify and prioritize research themes through polls, comments, and discussion. The polls explicitly asked participants to qualitatively evaluate the importance (not at all, slightly, somewhat, very, or extremely) and urgency (not at all, slightly, somewhat, very, or extremely) of the thematically grouped research and data needs. These evaluations were plotted and shared during the workshop to visualize how the relative importance ( x -axis) and relative urgency ( y -axis) of each “need,” relative to other needs, to identify the most necessary (importance) and time-sensitive (urgent) items, thereby allowing an enhanced, holistic understanding of the sediment budget at GINS. Results of the poll are published as a USGS data release. The assessment results revealed that the most important and urgent research and data needs included mapping (for example, elevation, habitat, and cultural resources), a regional sediment budget and management plan, and the dynamic modeling of sediment processes. During the workshop, these issues were visualized using scatter plots to demonstrate the relative importance and urgency of each theme, provide descriptive statistics, and elicit discussion. This format of iterative presentation, discussion, and prioritization allowed the project team to effectively accomplish their objective of identifying important and urgent research needs for natural and cultural resource stewardship at the GINS. Through the workshop, it was determined that expanded communication with the broader research community was needed to coordinate research activities and streamline potential funding opportunities and that research and policy should be integrated through a structured decision-making process. At the conclusion of the workshop, an administered poll showed that the presentations effectively identified data and research needs and that the goals of the workshop were achieved. The results suggest that this type of needs-assessment workshop can effectively identify existing research capabilities and data, determine and prioritize research and data needs, and address how these efforts can use regional partnerships to aid natural and cultural resource conservation and management at National Parks.

Florida, Mississippi↗

USGS2012

Effects of a drawdown on plant communities in a freshwater impoundment at Lacassine National Wildlife Refuge, Louisiana

Disturbance is an important natural process in the creation and maintenance of wetlands. Water depth manipulation and prescribed fire are two types of disturbance commonly used by humans to influence vegetation succession and composition in wetlands with the intention of improving wildlife habitat value. A 6,475-hectare (ha) impoundment was constructed in 1943 on Lacassine National Wildlife Refuge in southwest Louisiana to create freshwater wetlands as wintering waterfowl habitat. Ten years after construction of the impoundment, called Lacassine pool, was completed, refuge staff began expressing concerns about increasing emergent vegetation cover, organic matter accumulation, and decreasing area of open water within the pool. Because the presence of permanent standing water impedes actions that can address these concerns, a small impoundment within the pool where it was possible to manipulate water depth was created. The 283-ha subimpoundment called Unit D was constructed in 1989. Water was pumped from Unit D in 1990, and the unit was permanently reflooded about 3 years later. Four prescribed fires were applied during the drawdown. A study was initiated in 1990 to investigate the effect of the experimental drawdown on vegetation and soils in Unit D. Four plant community types were described, and cores were collected to measure the depth of the soil organic layer. A second study of Unit D was conducted in 1997, 4 years after the unit was reflooded, by using the same plots and similar sampling methods. This report presents an analysis and synthesis of the data from the two studies and provides an evaluation of the impact of the management techniques applied. We found that plant community characteristics often differed among the four communities and varied with time. Species richness increased in two of the communities, and total aboveground biomass increased in all four during the drawdown. These changes, however, did not persist when Unit D was reflooded; by 1997, species richness and aboveground biomass were equivalent to values before the drawdown. The change in waterfowl food value of the plant communities during the drawdown varied; it did not change in two communities, increased in one, and decreased in one. A consistent pattern noted was that waterfowl food value was higher in communities that contained open water than in those dominated by emergent plants, both soon after the drawdown was initiated in Unit D and 4 years after reflooding. A reduction in depth of the soil organic layer became apparent 20 months after drawdown was initiated, and this reduction persisted in 1997, 4 years after reflooding. A separate 2003 study on soil characteristics in Lacassine pool found that the depth to the clay layer was lower in Unit D than in the rest of the pool. We were not able to establish a cause-and-effect relation between any changes noted and the fact water levels in the unit were drawn down because the initial study in 1990 did not include control plots. Changes in vegetation and soil organic layer depth identified in Unit D may have occurred in the surrounding Lacassine pool habitat as well. Similarly, we were unable to form any conclusions about the effect of the prescribed fire treatments because there was no information on which plots were burned. Because of the known relation between anaerobic soil conditions and reduced decomposition of organic matter, however, it is likely that the drawdown in Unit D resulted in an increased decomposition rate and a reduction in the depth of the soil organic layer.

Louisiana↗