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At least 1,279 records · Page 71Linked to original sources
USGS2017

Soil-occupancy effects of invasive and native grassland plant species on composition and diversity of mycorrhizal associations

Diversified grasslands that contain native plant species can produce biofuels, support sustainable grazing systems, and produce other ecosystem services. However, ecosystem service production can be disrupted by invasion of exotic perennial plants, and these plants can have soil-microbial “legacies” that may interfere with establishment and maintenance of diversified grasslands even after effective management of the invasive species. The nature of such legacies is not well understood, but may involve suppression of mutualisms between native species and soil microbes. In this study, we tested the hypotheses that legacy effects of invasive species change colonization rates, diversity, and composition of arbuscular-mycorrhizal fungi (AMF) associated with seedlings of co-occurring invasive and native grassland species. In a glasshouse, experimental soils were conditioned by cultivating three invasive grassland perennials, three native grassland perennials, and a native perennial mixture. Each was grown separately through three cycles of growth, after which we used T-RFLP analysis to characterize AMF associations of seedlings of six native perennial and six invasive perennial species grown in these soils. Legacy effects of soil conditioning by invasive species did not affect AMF richness in seedling roots, but did affect AMF colonization rates and the taxonomic composition of mycorrhizal associations in seedling roots. Moreover, native species were more heavily colonized by AMF and roots of native species had greater AMF richness (number of AMF operational taxonomic units per seedling) than did invasive species. The invasive species used to condition soil in this experiment have been shown to have legacy effects on biomass of native seedlings, reducing their growth in this and a previous similar experiment. Therefore, our results suggest that successful plant invaders can have legacies that affect soil-microbial associations of native plants and that these effects can inhibit growth of native plant species in invaded communities.

Montana;North Dakota↗
USGS1996

The potential impact of herbivores on the susceptibility of the marsh plant Sagittaria lancifolia to saltwater intrusion in coastal wetlands

The objective of this study was to experimentally evaluate the effects of simulated herbivory on the ability of a freshwater marsh plant to recover from temporary saltwater intrusion such as can be caused by tropical storms. Sods containing Sagittaria lancifolia , a dominant plant in interior coastal marshes, were manipulated in the field so as to subject plants to a pulse of 15‰ salt water for a duration of 1 wk. In addition to the exposure to salt water, some plants were also subjected to both short-term and long-term flooding treatments of 20 cm, and to simulated herbivory (clipping). Following exposure to salt water, plants were allowed to recover over the winter and were harvested the next June. Neither simulated herbivory, nor salinity, nor flooding caused any long-term effect either singly or in pairwise combinations. However, when plants were subjected to herbivory, salt water, and flooding simultaneously, reduced growth and plant death occurred. These results suggest that high levels of grazing by herbivores may increase the susceptibility of coastal marsh plants to damage from saltwater intrusion.

Louisiana↗
USGS2011

Evaluation of LiDAR-acquired bathymetric and topographic data accuracy in various hydrogeomorphic settings in the Deadwood and South Fork Boise Rivers, West-Central Idaho, 2007

High-quality elevation data in riverine environments are important for fisheries management applications and the accuracy of such data needs to be determined for its proper application. The Experimental Advanced Airborne Research LiDAR (Light Detection and Ranging)-or EAARL-system was used to obtain topographic and bathymetric data along the Deadwood and South Fork Boise Rivers in west-central Idaho. The EAARL data were post-processed into bare earth and bathymetric raster and point datasets. Concurrently with the EAARL surveys, real-time kinematic global positioning system surveys were made in three areas along each of the rivers to assess the accuracy of the EAARL elevation data in different hydrogeomorphic settings. The accuracies of the EAARL-derived raster elevation values, determined in open, flat terrain, to provide an optimal vertical comparison surface, had root mean square errors ranging from 0.134 to 0.347 m. Accuracies in the elevation values for the stream hydrogeomorphic settings had root mean square errors ranging from 0.251 to 0.782 m. The greater root mean square errors for the latter data are the result of complex hydrogeomorphic environments within the streams, such as submerged aquatic macrophytes and air bubble entrainment; and those along the banks, such as boulders, woody debris, and steep slopes. These complex environments reduce the accuracy of EAARL bathymetric and topographic measurements. Steep banks emphasize the horizontal location discrepancies between the EAARL and ground-survey data and may not be good representations of vertical accuracy. The EAARL point to ground-survey comparisons produced results with slightly higher but similar root mean square errors than those for the EAARL raster to ground-survey comparisons, emphasizing the minimized horizontal offset by using interpolated values from the raster dataset at the exact location of the ground-survey point as opposed to an actual EAARL point within a 1-meter distance. The average error for the wetted stream channel surface areas was -0.5 percent, while the average error for the wetted stream channel volume was -8.3 percent. The volume of the wetted river channel was underestimated by an average of 31 percent in half of the survey areas, and overestimated by an average of 14 percent in the remainder of the survey areas. The EAARL system is an efficient way to obtain topographic and bathymetric data in large areas of remote terrain. The elevation accuracy of the EAARL system varies throughout the area depending upon the hydrogeomorphic setting, preventing the use of a single accuracy value to describe the EAARL system. The elevation accuracy variations should be kept in mind when using the data, such as for hydraulic modeling or aquatic habitat assessments.

Idaho↗
USGS2011

Salmon carcasses increase stream productivity more than inorganic fertilizer pellets: A test on multiple trophic levels in streamside experimental channels

Inorganic nutrient amendments to streams are viewed as possible restoration strategies for re-establishing nutrients and stream productivity throughout the western coast of North America, where salmon runs and associated marine-derived nutrient subsidies have declined. In a mesocosm experiment, we examined the short-term (6 weeks) comparative effects of artificial nutrient pellets and salmon carcasses, alone (low and high amounts) and in combination, on stream food webs. Response variables included dissolved nutrient concentrations, biofilm ash-free dry mass (AFDM) and chlorophyll- a levels, macroinvertebrate density, growth and body condition of juvenile coho salmon Oncorhynchus kisutch , and whole-body lipid content of invertebrates and juvenile coho salmon. Most of the response variables were significantly influenced by carcass treatment; the only response variable significantly influenced by fertilizer pellet treatment was soluble reactive phosphorus (SRP) concentration. Ammonium-nitrogen concentration was the only response variable affected by both (low and high) levels of carcass treatment; all others showed no significant response to the two carcass treatment levels. Significant treatment × time interactions were observed for all responses except nitrate; for most responses, significant treatment effects were detected at certain time periods and not others. For example, significantly higher SRP concentrations were recorded earlier in the experiment, whereas significant fish responses were observed later. These results provide evidence that inorganic nutrient additions do not have the same ecological effects in streams as do salmon carcasses, potentially because inorganic nutrient additions lack carbon-based biochemicals and macromolecules that are sequestered directly or indirectly by consumers. Salmon carcasses, preferably deposited naturally during spawning migrations, appear to be far superior to inorganic nutrient amendments for sustaining and restoring stream productivity, including fish production, and should be chosen over artificial nutrient additions when feasible and practical.

Alaska↗
USGS2017

Topographic, edaphic, and vegetative controls on plant-available water

Soil moisture varies within landscapes in response to vegetative, physiographic, and climatic drivers, which makes quantifying soil moisture over time and space difficult. Nevertheless, understanding soil moisture dynamics for different ecosystems is critical, as the amount of water in a soil determines a myriad ecosystem services and processes such as net primary productivity, runoff, microbial decomposition, and soil fertility. We investigated the patterns and variability in in situ soil moisture measurements converted to plant-available water across time and space under different vegetative cover types and topographic positions at the Marcell Experimental Forest (Minnesota, USA). From 0 – 228.6 cm soil depth, plant-available water was significantly higher under the hardwoods (12%), followed by the aspen (8%) and red pine (5%) cover types. Across the same soil depth, toeslopes were wetter (mean plant-available water = 10%) than ridges and backslopes (mean plant-available water was 8%), although these differences were not statistically significant ( p < 0.05). Using a mixed model of fixed and random effects, we found that cover type, soil texture, and time were related to plant-available water and that topography was not significantly related to plant-available water within this low-relief landscape. Additionally, during the three-year monitoring period, red pine and quaking aspen sites experienced plant-available water levels that may be considered limiting to plant growth and function. Given that increasing temperatures and more erratic precipitation patterns associated with climate change may result in decreased soil moisture in this region, these species may be sensitive and vulnerable to future shifts in climate.

Ecohydrology↗
USGS1998

The use of synthesized aqueous solutions for determining strontium sorption isotherms

The use of synthesized aqueous solutions for determining experimentally derived strontium sorption isotherms of sediment was investigated as part of a study accessing strontium chemical transport properties. Batch experimental techniques were used to determine strontium sorption isotherms using synthesized aqueous solutions designed to chemically represent water from a natural aquifer with respect to major ionic character and pH. A strontium sorption isotherm for a sediment derived using a synthesized aqueous solution was found to be most comparable to an isotherm derived using natural water when the synthesized aqueous solution contained similar concentrations of calcium and magnesium. However, it is difficult to match compositions exactly due to the effects of disequilibrium between the solution and the sediment. Strong linear relations between sorbed strontium and solution concentrations of calcium and magnesium confirm that these cations are important co-constituents in these synthesized aqueous solutions. Conversely, weak linear relations between sorbed strontium and solution concentrations of sodium and potassium indicate that these constituents do not affect sorption of strontium. The addition of silica to the synthesized aqueous solution does not appreciably affect the resulting strontium sorption isotherm.

Journal of Contaminant Hydrology↗
USGS2014

Compositional and stable carbon isotopic fractionation during non-autocatalytic thermochemical sulfate reduction by gaseous hydrocarbons

The possibility of autocatalysis during thermochemical sulfate reduction (TSR) by gaseous hydrocarbons was investigated by examination of previously reported laboratory and field data. This reaction was found to be a kinetically controlled non-autocatalytic process, and the apparent lack of autocatalysis is thought to be due to the absence of the required intermediate species. Kinetic parameters for chemical and carbon isotopic fractionations of gaseous hydrocarbons affected by TSR were calculated and found to be consistent with experimentally derived values for TSR involving long-chain hydrocarbons. Model predictions based on these kinetic values indicate that TSR by gaseous hydrocarbon requires high-temperature conditions. The oxidation of C 2–5 hydrocarbons by sulfate reduction is accompanied by carbon isotopic fractionation with the residual C 2–5 hydrocarbons becoming more enriched in 13 C. Kinetic parameters were calculated for the stable carbon isotopic fractionation of gaseous hydrocarbons that have experienced TSR. Model predictions based on these kinetics indicate that it may be difficult to distinguish the effects of TSR from those of thermal maturation at lower levels of hydrocarbon oxidation; however, unusually heavy δ 13 C 2+ values (>−10‰) can be diagnostic of high levels of conversion (>50%). Stoichiometric and stable carbon isotopic data show that methane is stable under the investigated reaction conditions and is likely a product of TSR by other gaseous hydrocarbons rather than a significant reactant. These results indicate that the overall TSR reaction mechanism for oxidation of organic substrates containing long-chain hydrocarbons involves three distinct phases as follows: (1) an initial slow and non-autocatalytic stage characterized by the reduction of reactive sulfate by long-chain saturated hydrocarbons; (2) a second autocatalytic reaction phase dominated by reactions involving reduced sulfur species and partially oxidized hydrocarbons; (3) and a final, or late-stage, TSR reaction in which hydrocarbon oxidation continues at a slower rate via the non-autocatalytic reduction of sulfate by gaseous hydrocarbons.

Geochimica et Cosmochimica Acta↗
USGS2000

Interaction of infection with Renibacterium salmoninarum and physical stress in juvenile chinook salmon: Physiological responses, disease progression, and mortality

We experimentally infected juvenile spring chinook salmon Oncorhynchus tshawytscha with Renibacterium salmoninarum (Rs), the causative agent of bacterial kidney disease (BKD), in order to compare the physiological responses of Rs-infected and Rs-noninfected fish to a series of multiple, acute stressors and to determine whether exposure to these stressors worsens the infection and leads to increased mortality. After subjecting groups of fish to a waterborne challenge of Rs, we sampled them biweekly to monitor infection levels, mortality, and some stress-related physiological changes. As infections worsened, fish developed decreased hematocrits and blood glucose levels and increased levels of cortisol and lactate, indicating that BKD is stressful, particularly during the later stages. Eight weeks after the challenge, when fish had moderate to high infection levels, we subjected them, along with unchallenged control fish, to three 60-s bouts of hypoxia, struggling, and mild agitation that were separated by 48-72 h. Our results indicate that the imposition of these stressors on Rs-infected fish did not lead to higher infection levels or increased mortality when compared with diseased fish that did not receive the stressors. Furthermore, the kinetics of plasma cortisol, glucose, and lactate over a 24-h period following each application of the stressor were similar between fish with moderate to high Rs infections and those that had low or no detectable infection. Some differences in the stress responses of these two groups did exist, however. Most notably, fish with moderate to high Rs infections had higher titers of cortisol and lactate prior to each application of the stressor and also were unable to consistently elicit a significant hyperglycemia in response to the stressors. Collectively, our results should be important in understanding the impact that BKD has on the survival of juvenile salmonids, but we caution that our results represent the combined effects of one type of stressor and one disease only and probably cannot be applied to other scenarios.

Transactions of the American Fisheries Society↗
USGS2023

Experimentally induced dieback conditions limit Phragmites australis growth

Phragmites australis is a cosmopolitan grass species common in wetland ecosystems across the world. In much of North America, the non-native subspecies of Phragmites threatens wetland biodiversity, hinders recreation, and is a persistent problem for natural resource managers. In other parts of the world, populations are in decline, as Reed Die-Back Syndrome (RDBS) plagues some Phragmites stands in its native range. RDBS is defined by a clumped growth form, stunted root and shoot growth, premature senescence, and shoot death. RDBS has been associated with a build-up of short-chain fatty acids (SCFAs) and altered bacterial and oomycete communities in soils, but the exact causes are unknown. To control invasive Phragmites populations, we sought to develop treatments that mimic the conditions of RDBS. We applied various SCFA treatments at various concentrations to mesocosm soils growing either Phragmites or native wetland plants. We found that the high-concentration SCFA treatments applied weekly induced strong significant declines in above- and belowground biomass of Phragmites . Declines were significant but slightly weaker in native species. In addition, soil bacterial abundance increased, diversity decreased, and bacterial community composition significantly differed following treatments, such that treated pots maintained a higher relative abundance of Pseudomonadaceae and fewer Acidobacteriaceae than untreated pots. Our results suggest that application of SCFAs to Phragmites can lead to stunted plants and altered soil bacterial communities similar to populations affected by RDBS. However, the lack of species-specificity and intensive application rate may not make this treatment ideal as a widespread management tool.

Michigan, Ohio↗
USGS2004

Effects of housing density and cage floor space on C57BL/6J mice

The Guide for the Care and Use of Laboratory Animals (the Guide) is widely accepted as the housing standard by most Institutional Animal Care and Use Committees. The recommendations are based on best professional judgment rather than experimental data. Current efforts are directed toward replacing these guidelines with data-driven, species-appropriate standards. Our studies were undertaken to determine the optimum housing density for C57BL/6J mice, the most commonly used inbred mouse strain. Four-week-old mice were housed for 8 weeks at four densities (the recommended ???12 in2 [ca. 77.4 cm 2]/mouse down to 5.6 in2 [ca. 36.1 cm2]/mouse) in three cage types with various amounts of floor space. Housing density did not affect a variety of physiologic parameters but did affect certain micro-environmental parameters, although these remained within accepted ranges. A second study was undertaken housing C57BL/6J mice with as little as 3.2 in2/mouse (ca. 20.6 cm2). The major effect was elevated ammonia concentrations that exceeded limits acceptable in the workplace at increased housing densities; however, the nasal passages and eyeballs of the mice remained microscopically normal. On the basis of these results, we conclude that C57BL/6J mice as large as 29 g may be housed with 5.6 in2 of floor space per mouse. This area is approximately half the floor space recommended in the Guide. The role of the Guide is to ensure that laboratory animals are well treated and housed in a species-appropriate manner. Our data suggest that current policies could be altered in order to provide the optimal habitation conditions matched to this species' social needs. Copyright 2004 by the American Association for Laboratory Animal Science.

Comparative Medicine↗
USGS1998

The reproductive success of lake herring in habitats near shipping channels and ice-breaking operations in the St. Marys River, Michigan, USA

A study of the reproductive success of lake herring ( Coregonus artedi ) in the St. Marys River was conducted in the winters and springs of 1994, 1995, and 1996. The St. Marys River connects Lake Superior to the lower Great Lakes making it an important route for ship traffic. Recent pressure by commercial carriers to extend the shipping season by breaking ice earlier in spring, has raised concerns over the possible adverse effects on lake herring reproduction in the river caused by increased turbidity associated with vessel passage. Lake herring spawn in fall and their eggs overwinter under ice cover on the bottom of the St. Marys River. Hatching occurs in the spring after ice-out when water temperatures rise. Specialized incubators were used to hold fertilized lake herring eggs at four experimental sites, chosen to represent the range of various bottom substrate types of the St. Marys River from boulder rock reefs to soft sediments. In winter, incubators were placed under the ice on the bottom of the river at three sites each year. After ice-out, sites were relocated, and the incubators were retrieved and opened to determine the number of live and dead lake herring eggs and larvae. Survival was consistent from year to year at each site with the lowest survival percentage found at the site with the softest sediments, directly adjacent to the St. Marys River channel and downstream of the mouth of the Charlotte River. River bottom type and geographic location were the most important factors in determining egg survival. Sampling for indigenous larval lake herring was done throughout the spring hatching season in the areas adjacent to the incubator sites using nets and a diver-operated suction sampler. Result indicate that a small population (3) of larval lake herring was present throughout the sampling areas during the springs of 1994, 1995, and 1996 in the St. Marys River.

St. Marys River↗
USGS2021

Shining a light on Laurentian Great Lakes cisco (Coregonus artedi): How ice coverage may impact embryonic development

Changes in winter conditions, such as decreased ice coverage and duration, have been observed in the Laurentian Great Lakes for more than 20 years. Such changes have been hypothesized to be linked to low Coregonus spp. survival to age-1 as most cisco ( Coregonus artedi ) populations are autumn spawners whose embryos incubate under ice throughout the winter. The quantity of light during winter is regulated by ice coverage, and light affects embryo survival and development in some teleosts. We experimentally evaluated how cisco embryos from lakes Superior and Ontario respond to three light treatments that represented day-light intensity under 0–10, 40–60, and 90–100% ice coverage. Embryonic response measures included two developmental factors (embryo survival and incubation period) and two morphological traits (length-at-hatch and yolk-sac volume). Embryo survival was highest at the medium light treatment and decreased at high and low treatments for both populations, suggesting cisco may be adapted to withstand some light exposure from inter-annual variability in ice coverage. Light intensity had no overall effect on length of incubation. Increasing light intensity decreased length-at-hatch in Lake Superior but had no effect in Lake Ontario. Yolk-sac volume was positively correlated with increasing light in Lake Superior and negatively correlated in Lake Ontario. Contrasting responses in embryo development between lakes suggests differences in populations’ response to light is flexible. Our results provide a step towards better understanding the high variability observed in coregonine recruitment and may help predict what the future of this species may look like under current climate trends.

Journal of Great Lakes Research↗
USGS2008

Parent-offspring communication in the western sandpiper

Western sandpiper (Calidris mauri) chicks are precocial and leave the nest shortly after hatch to forage independently. Chicks require thermoregulatory assistance from parents (brooding) for 5-7 days posthatch, and parents facilitate chick survival for 2-3 weeks posthatch by leading and defending chicks. Parental vocal signals are likely involved in protecting chicks from predators, preventing them from wandering away and becoming lost and leading them to good foraging locations. Using observational and experimental methods in the field, we describe and demonstrate the form and function of parent-chick communication in the western sandpiper. We document 4 distinct calls produced by parents that are apparently directed toward their chicks (brood, gather, alarm, and freeze calls). Through experimental playback of parental and non-parental vocalizations to chicks in a small arena, we demonstrated the following: 1) chicks respond to the alarm call by vocalizing relatively less often and moving away from the signal source, 2) chicks respond to the gather call by vocalizing relatively more often and moving toward the signal source, and 3) chicks respond to the freeze call by vocalizing relatively less often and crouching motionless on the substrate for extended periods of time. Chicks exhibited consistent directional movement and space use to parental and non-parental signals. Although fewer vocalizations were given in response to non-parental signals, which may indicate a weaker response to unfamiliar individuals, the relative number of chick calls given to each type of call signal was consistent between parental and non-parental signals. We also discovered 2 distinct chick vocalizations (chick-contact and chick-alarm calls) during arena playback experiments. Results indicate that sandpiper parents are able to elicit antipredatory chick behaviors and direct chick movement and vocalizations through vocal signals. Future study of parent-offspring communication should determine whether shorebird chicks exhibit parental recognition though vocalizations and the role of chick vocalizations in parental behavior. ?? The Author 2008. Published by Oxford University Press on behalf of the International Society for Behavioral Ecology. All rights reserved.

Behavioral Ecology↗
USGS2005

Comparison of methods for estimating ground-water recharge and base flow at a small watershed underlain by fractured bedrock in the Eastern United States

This study by the U.S. Geological Survey (USGS), in cooperation with the Agricultural Research Service (ARS), U.S. Department of Agriculture, compared multiple methods for estimating ground-water recharge and base flow (as a proxy for recharge) at sites in east-central Pennsylvania underlain by fractured bedrock and representative of a humid-continental climate. This study was one of several within the USGS Ground-Water Resources Program designed to provide an improved understanding of methods for estimating recharge in the eastern United States. Recharge was estimated on a monthly and annual basis using four methods?(1) unsaturated-zone drainage collected in gravity lysimeters, (2) daily water balance, (3) water-table fluctuations in wells, and (4) equations of Rorabaugh. Base flow was estimated by streamflow-hydrograph separation using the computer programs PART and HYSEP. Estimates of recharge and base flow were compared for an 8-year period (1994-2001) coinciding with operation of the gravity lysimeters at an experimental recharge site (Masser Recharge Site) and a longer 34-year period (1968-2001), for which climate and streamflow data were available on a 2.8-square-mile watershed (WE-38 watershed). Estimates of mean-annual recharge at the Masser Recharge Site and WE-38 watershed for 1994-2001 ranged from 9.9 to 14.0 inches (24 to 33 percent of precipitation). Recharge, in inches, from the various methods was: unsaturated-zone drainage, 12.2; daily water balance, 12.3; Rorabaugh equations with PULSE, 10.2, or RORA, 14.0; and water-table fluctuations, 9.9. Mean-annual base flow from streamflow-hydrograph separation ranged from 9.0 to 11.6 inches (21-28 percent of precipitation). Base flow, in inches, from the various methods was: PART, 10.7; HYSEP Local Minimum, 9.0; HYSEP Sliding Interval, 11.5; and HYSEP Fixed Interval, 11.6. Estimating recharge from multiple methods is useful, but the inherent differences of the methods must be considered when comparing results. For example, although unsaturated-zone drainage from the gravity lysimeters provided the most direct measure of potential recharge, it does not incorporate spatial variability that is contained in watershed-wide estimates of net recharge from the Rorabaugh equations or base flow from streamflow-hydrograph separation. This study showed that water-level fluctuations, in particular, should be used with caution to estimate recharge in low-storage fractured-rock aquifers because of the variability of water-level response among wells and sensitivity of recharge to small errors in estimating specific yield. To bracket the largest range of plausible recharge, results from this study indicate that recharge derived from RORA should be compared with base flow from the Local-Minimum version of HYSEP.

Scientific Investigations Report↗
USGS1998

Effects of landscape composition and wetland fragmentation on frog and toad abundance and species richness in Iowa and Wisconsin, USA [abstract]

We examined the relationships between anuran diversity and landscape features in the Upper Midwestern United States. Anuran relative abundance and species richness were measured using data collected by Wisconsin and Iowa state calling surveys conducted from 1990-1995. Landscape features surrounding survey points were determined using National Wetland Inventory and Wisconsin Wetland Inventory maps. We tested several hypotheses suggested by the literature. We hypothesized that the relative abundance and species richness of anurans that breed in ephemeral wetlands is positively correlated with the surrounding area of temporary wetlands and emergent wetlands. We hypothesized that the relative abundance and species richness of anurans is positively correlated with patch diversity and wetland edges, in the absence of local fragmentation effects. We hypothesized that the relative abundance and species richness of anurans is positively associated with forests but negatively associated with agriculture and urban areas. Our results show that the interspersion of different wetland types and the concomitant increase in wetland edge habitats were generally positive for frogs and toads and anuran abundance and diversity were generally higher in association with forests, especially forested wetlands. The presence of agriculture did not always depress frog and toad populations or diversity; some species were associated with agricultural landscapes. The two states differed in how anurans were associated with landscape features like lakes and permanent wetlands. We found that frog and toad relative abundance and diversity were lower when urban areas were present. Managers can use models like ours, generated from landscape analyses, along with range maps and population trend analyses to get a comprehensive picture of the health of individual species and groups of species. Our models could be applied to the landscape as a whole, and used to predict species relative abundance and richness at new locations. Our work provides a framework for future experimental and intensive research on specific factors affecting the health of amphibians in the Upper Midwest.

Book chapter↗
USGS2005

Problems with sampling desert tortoises: A simulation analysis based on field data

The desert tortoise (Gopherus agassizii) was listed as a U.S. threatened species in 1990 based largely on population declines inferred from mark-recapture surveys of 2.59-km2 (1-mi2) plots. Since then, several census methods have been proposed and tested, but all methods still pose logistical or statistical difficulties. We conducted computer simulations using actual tortoise location data from 2 1-mi2 plot surveys in southern California, USA, to identify strengths and weaknesses of current sampling strategies. We considered tortoise population estimates based on these plots as "truth" and then tested various sampling methods based on sampling smaller plots or transect lines passing through the mile squares. Data were analyzed using Schnabel's mark-recapture estimate and program CAPTURE. Experimental subsampling with replacement of the 1-mi2 data using 1-km2 and 0.25-km2 plot boundaries produced data sets of smaller plot sizes, which we compared to estimates from the 1-mi 2 plots. We also tested distance sampling by saturating a 1-mi 2 site with computer simulated transect lines, once again evaluating bias in density estimates. Subsampling estimates from 1-km2 plots did not differ significantly from the estimates derived at 1-mi2. The 0.25-km2 subsamples significantly overestimated population sizes, chiefly because too few recaptures were made. Distance sampling simulations were biased 80% of the time and had high coefficient of variation to density ratios. Furthermore, a prospective power analysis suggested limited ability to detect population declines as high as 50%. We concluded that poor performance and bias of both sampling procedures was driven by insufficient sample size, suggesting that all efforts must be directed to increasing numbers found in order to produce reliable results. Our results suggest that present methods may not be capable of accurately estimating desert tortoise populations.

California↗
USGS2004

Mechanisms for dominance in an early successional old field by the invasive non-native Lespedeza cuneata (Dum. Cours.) G. Don

Researchers studying invasive plants often concentrate their efforts on predictive models thought to allow invasive plants to dominate native landscapes. However, if an invasive is already well established then experimental research is necessary to provide the information necessary to effectively manage the species. Prescribing appropriate management strategies without prior experimental research may not only be ineffective but also may squander limited resources or have the unintended consequence of furthering spread. Lespedeza cuneata (Dum. Cours.) G. Don. is a well-established invasive plant of old fields and tall-grass prairie in the US. Managers suspect this species shades-out native plants and this is proposed as its primary mechanism for dominance. Using field experiments we tested probable factors allowing the speices to establish itself and once established, interfere in old field plant communities. We also examined the effects of two common anthropogenic disturbances (mowing and nutrients) on L. cuneata growth and establishment. When L. cuneata was treated (clipping, herbicide and stem pull-back) there was a significant increase in species richness and native speices cover. Stem density and canopy cover of L. cuneata increased significantly with mowing frequency but decreased with nutrient input. We suggest that mowing benefits L. cuneata while also hindering woody competition. Results also indicate L. cuneata is less prevalent on nutrient enriched soils than on unamended soil. Lespedeza cuneata appears to suppress native plants by shading them out and it can subsequently take over grassland communities. Since it has a varying response to human induced disturbances and may actually benefit from mowing, land managers should be cautious when utilizing this as a management tool.

Biological Invasions↗
USGS2009

Differential virulence mechanisms of infectious hematopoietic necrosis virus in rainbow trout (Oncorhynchus mykiss) include host entry and virus replication kinetics

Host specificity is a phenomenon exhibited by all viruses. For the fish rhabdovirus infectious hematopoietic necrosis virus (IHNV), differential specificity of virus strains from the U and M genogroups has been established both in the field and in experimental challenges. In rainbow trout (Oncorhynchus mykiss), M IHNV strains are consistently more prevalent and more virulent than U IHNV. The basis of the differential ability of these two IHNV genogroups to cause disease in rainbow trout was investigated in live infection challenges with representative U and M IHNV strains. When IHNV was delivered by intraperitoneal injection, the mortality caused by U IHNV increased, indicating that the low virulence of U IHNV is partly due to inefficiency in entering the trout host. Analyses of in vivo replication showed that U IHNV consistently had lower prevalence and lower viral load than M IHNV during the course of infection. In analyses of the host immune response, M IHNV-infected fish consistently had higher and longer expression of innate immune-related genes such as Mx-1. This suggests that the higher virulence of M IHNV is not due to suppression of the immune response in rainbow trout. Taken together, the results support a kinetics hypothesis wherein faster replication enables M IHNV to rapidly achieve a threshold level of virus necessary to override the strong host innate immune response. ?? 2009 SGM.

Journal of General Virology↗