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Environmental factors affecting contaminant toxicity in aquatic and terrestrial vertebrates

Environmental factors have long been demonstrated to influence the toxicity of pollutants to vertebrates. The vast majority of data has been derived from studies on fish, highly inbred laboratory rodents, and man. 1,2 The magnitude and significance of these factors on toxicity has almost exclusively been elucidated in controlled experiments conducted in a laboratory setting. The significance of such effects to free-ranging vertebrate wildlife is frequently overlooked. Drawing upon controlled experiments and observational science, we overview environmental factors that influence pollutant toxicity in fish and wildlife, and attempt to present some perspective on their ecotoxicological significance.

Book chapter↗

A practical solution: The Anthropocene is a geological event, not a formal epoch

The Anthropocene has yet to be defined in a way that is functional both to the international geological community and to the broader fields of environmental and social sciences. Formally defining the Anthropocene as a chronostratigraphical series and geochronological epoch with a precise global start date would drastically reduce the Anthropocene’s utility across disciplines. Instead, we propose the Anthropocene be defined as a geological event, thereby facilitating a robust geological definition linked with a scholarly framework more useful to and congruent with the many disciplines engaging with human-environment interactions. Unlike formal epochal definitions, geological events can recognize the spatial and temporal heterogeneity and diverse social and environmental processes that interact to produce anthropogenic global environmental changes. Consequently, an Anthropocene Event would incorporate a far broader range of transformative human cultural practices and would be more readily applicable across academic fields than an Anthropocene Epoch, while still enabling a robust stratigraphic characterization.

Episodes↗

What is eDNA method standardization and why do we need it?

The rapid advancement of environmental DNA ( eDNA ) science in the past two decades has inspired a concomitant growth in the development of eDNA sampling and analytical methods. However, these methods are often developed by individual laboratories or institutions, which can isolate protocols within programmes, agencies or regions and prevent the beneficial exchange of data and ideas. Recent efforts to advance national and international coordination have resulted in a groundswell of standardisation efforts, but there is still considerable confusion around the role of formal standards for regulatory or research applications. With this commentary, we hope to provide clarity on the terminology used in standardisation discussions, including the differences between formal standards and best practice guidelines. Additionally, we discuss how eDNA method choice may be informed by environmental management scenarios and review examples of formal eDNA method standards being used to inform management action. The eDNA community now has an opportunity to develop a roadmap for method development to help close standardisation gaps, advance eDNA method adoption and accelerate our ability to monitor biological life at the scales our current environmental challenges demand.

Metabarcoding and Metagenomics↗

From agricultural geology to hydropedology: Forging links within the twenty-first-century geoscience community

Despite historical linkages, the fields of geology and soil science have developed along largely divergent paths in the United States during much of the mid- to late-twentieth century. The shift in recent decades within both disciplines, towards greater emphasis on environmental-quality issues and a systems approach, has created new opportunities for collaboration and cross-training. Because of the importance of the soil as a dynamic interface between the hydrosphere, biosphere, atmosphere and lithosphere, introductory and advanced soil-science classes are now taught in a number of Earth and environmental science departments. The National Research Council's recent report, Basic Research Opportunities in Earth Science, highlights the soil zone as part of the land surface to groundwater 'critical zone' requiring additional investigation. To better prepare geology undergraduates to deal with complex environmental problems, their training should include a fundamental understanding of the nature and properties of soils. Those undergraduate geology students with an interest in this area should be encouraged to view soil science as a viable Earth-science specialty area for graduate study. ?? The Geological Society of London 2006.

Geological Society Special Publication↗

GeoImageNet: A multi-source natural feature benchmark dataset for GeoAI and supervised machine learning

The field of GeoAI or Geospatial Artificial Intelligence has undergone rapid development since 2017. It has been widely applied to address environmental and social science problems, from understanding climate change to tracking the spread of infectious disease. A foundational task in advancing GeoAI research is the creation of open, benchmark datasets to train and evaluate the performance of GeoAI models. While a number of datasets have been published, very few have centered on the natural terrain and its landforms. To bridge this gulf, this paper introduces a first-of-its-kind benchmark dataset, GeoImageNet, which supports natural feature detection in a supervised machine-learning paradigm. A distinctive feature of this dataset is the fusion of multi-source data, including both remote sensing imagery and DEM in depicting spatial objects of interest. This multi-source dataset allows a GeoAI model to extract rich spatio-contextual information to gain stronger confidence in high-precision object detection and recognition. The image dataset is tested with a multi-source GeoAI extension against two well-known object detection models, Faster-RCNN and RetinaNet. The results demonstrate the robustness of the dataset in aiding GeoAI models to achieve convergence and the superiority of multi-source data in yielding much higher prediction accuracy than the commonly used single data source.

GeoInformatica↗

Use of alligator hole abundance and occupancy rate as indicators for restoration of a human-altered wetland

Use of indicator species as a measure of ecosystem conditions is an established science application in environmental management. Because of its role in shaping wetland systems, the American alligator (Alligator mississippiensis) is one of the ecological indicators for wetland restoration in south Florida, USA. We conducted landscape-level aerial surveys of alligator holes in two different habitats in a wetland where anthropogenic modification of surface hydrology has altered the natural system. Alligator holes were scarcer in an area where modified hydrology caused draining and frequent dry-downs compared to another area that maintains a functional wetland system. Lower abundance of alligator holes indicates lack of alligator activities, lower overall species diversity, and lack of dry-season aquatic refugia for other organisms. The occupancy rate of alligator holes was lower than the current restoration target for the Everglades, and was variable by size class with large size-class alligators predominantly occupying alligator holes. This may indicate unequal size-class distribution, different habitat selection by size classes, or possibly a lack of recruitment. Our study provides pre-restoration baseline information about one indicator species for the Everglades. Success of the restoration can be assessed via effective synthesis of information derived by collective research efforts on the entire suite of selected ecological indicators.

Florida↗

OpenCLC: An open-source software tool for similarity assessment of linear hydrographic features

The National Hydrography Dataset (NHD) is a foundational geospatial data source in the United States that enables extensive and diverse environmental research and supports decision-making in numerous contexts. However, the NHD requires regular validation and update given possible inconsistent initial collection and hydrographic changes. Furthermore, systems or tools that use NHD data must manage regular updates that occur within the high-resolution version of the NHD (NHD HR). This research contributes to filling this gap by establishing an open-source software tool named OpenCLC, which automatically identifies matching and mismatching line features between two sets of hydrographic flowlines. Aside from identifying differences among two version of NHD lines, results can be applied to improve the quality of NHD HR content. OpenCLC significantly outperforms the best available commercial off-the-shelf software in computational scalability, and it is made widely available as part of the CyberGIS Toolkit to benefit broad environmental and geospatial science communities.

SoftwareX↗

Chantelle postcard

Chantelle is a hydrologist in the Surface Water Investigation Unit. She received her bachelor of science degree in environmental geology from the University of Kansas.

General Information Product↗

Fall 2025

In this newsletter, we are excited to share our recent publication, Bridging theory and practice to inform seed selection for restoration , which is part of an ongoing collaborative effort with land managers and restoration practitioners to synthesize lessons learned and identify future research directions for native seed development and use in the U.S. We would also like to say thank you to Sarah Costanzo, who was instrumental to RAMPS field work for the past three years and is starting a PhD program in Environmental and Forest Sciences at the University of Washington. As always, please reach out with questions or collaboration opportunities for research and restoration in the Southwest.

RAMPS Newsletter↗

Cultivating future environmental stewards: A case study at John D. MacArthur Beach State Park

Our study supports previous research suggesting that participation in citizen-science programs can significantly enhance student learning and attitudes about science, while simultaneously promoting environmental stewardship. Providing students with the opportunity to collect scientific data through citizen-science programs can increase their understanding of local ecosystems, enhance their observation skills, and can improve their understanding of the scientific process.

Florida↗

Science implementation of Forecast Mekong for food and environmental security

Forecast Mekong is a significant international thrust under the Delta Research and Global Observation Network (DRAGON) of the U.S. Geological Survey (USGS) and was launched in 2009 by the U.S. Department of State and the Foreign Ministers of Cambodia, Laos, Thailand, and Vietnam under U.S. Department of State Secretary Hillary R. Clinton's Lower Mekong Initiative to enhance U.S. engagement with countries of the Lower Mekong River Basin in the areas of environment, health, education, and infrastructure. Since 2009, the USGS has worked closely with the U.S. Department of State; personnel from Cambodia, Laos, Thailand, and Vietnam; nongovernmental organizations; and academia to collect and use research and data from the Lower Mekong River Basin to provide hands-on results that will help decisionmakers in future planning and design for restoration, conservation, and management efforts in the Lower Mekong River Basin. In 2012 Forecast Mekong is highlighting the increasing cooperation between the United States and Lower Mekong River Basin countries in the areas of food and environmental security. Under the DRAGON, Forecast Mekong continues work in interactive data integration, modeling, and visualization system by initiating three-dimensional bathymetry and river flow data along with a pilot study of fish distribution, population, and migratory patterns in the Lower Mekong River Basin. When fully developed by the USGS, in partnership with local governments and universities throughout the Mekong River region, Forecast Mekong will provide valuable planning tools to visualize the consequences of climate change and river management.

Phnom Penh↗

Linkages between nutrients and assemblages of macroinvertebrates and fish in wadeable streams: Implication to nutrient criteria development

We sampled 240 wadeable streams across Wisconsin for different forms of phosphorus and nitrogen, and assemblages of macroinvertebrates and fish to (1) examine how macroinvertebrate and fish measures correlated with the nutrients; (2) quantify relationships between key biological measures and nutrient forms to identify potential threshold levels of nutrients to support nutrient criteria development; and (3) evaluate the importance of nutrients in influencing biological assemblages relative to other physicochemical factors at different spatial scales. Twenty-three of the 35 fish and 18 of the 26 macroinvertebrate measures significantly correlated (P < 0.05) with at least one nutrient measure. Percentages of carnivorous, intolerant, and omnivorous fishes, index of biotic integrity, and salmonid abundance were fish measures correlated with the most nutrient measures and had the highest correlation coefficients. Percentages of Ephemeroptera-Plecoptera-Trichoptera individuals and taxa, Hilsenhoff biotic index, and mean tolerance value were macroinvertebrate measures that most strongly correlated with the most nutrient measures. Selected biological measures showed clear trends toward degradation as concentrations of phosphorus and nitrogen increased, and some measures showed clear thresholds where biological measures changed drastically with small changes in nutrient concentrations. Our selected environmental factors explained 54% of the variation in the fish assemblages. Of this explained variance, 46% was attributed to catchment and instream habitat, 15% to nutrients, 3% to other water quality measures, and 36% to the interactions among all the environmental variables. Selected environmental factors explained 53% of the variation in macroinvertebrate assemblages. Of this explained variance, 42% was attributed to catchment and instream habitat, 22% to nutrients, 5% to other water quality measures, and 32% to the interactions among all the environmental variables. ?? 2006 Springer Science+Business Media, Inc.

Environmental Management↗

Land-Cover Trends of the Central Basin and Range Ecoregion

The U.S. Geological Survey (USGS) Land Cover Trends research project is focused on understanding the amounts, rates, trends, causes, and implications of contemporary land-use and land-cover (LU/LC) change in the United States. This project is supported by the USGS Geographic Analysis and Monitoring Program in collaboration with the U.S. Environmental Protection Agency (EPA) and the National Aeronautics and Space Administration (NASA). LU/LC change is a pervasive process that modifies landscape characteristics and affects a broad range of socioeconomic, biologic, and hydrologic systems. Understanding the impacts and feedbacks of LU/LC change on environmental systems requires an understanding of the rates, patterns, and driving forces of past, present, and future LU/LC change. The objectives of the Land Cover Trends project are to (1) determine and describe the amount, rates, and trends of contemporary LU/LC change by ecoregion for the period 1973-2000 for the conterminous United States, (2) document the causes, driving forces, and implications of change, and (3) synthesize individual ecoregion results into a national assessment of LU/LC change. The Land Cover Trends research team includes staff from the USGS National Center for Earth Resources Observation and Science (EROS), Rocky Mountain Geographic Science Center, Eastern Geographic Science Center, Mid-Continent Geographic Science Center, and the Western Geographic Science Center. Other partners include researchers at South Dakota State University, University of Southern Mississippi, and State University of New York College of Environmental Science and Forestry. This report presents an assessment of LU/LC change in the Central Basin and Range ecoregion for the period 1973-2000. The Central Basin and Range ecoregion is one of 84 Level-III ecoregions as defined by the Environmental Protection Agency. Ecoregions have served as a spatial framework for environmental resource management and to denote areas that contain a geographically distinct assemblage of biotic and abiotic phenomena including geology, physiography, vegetation, climate, soils, land use, wildlife, and hydrology. The established Land Cover Trends methodology generates estimates of LU/LC change using a probability sampling approach and change-detection analysis of thematic land-cover images derived from Landsat satellite imagery.

Scientific Investigations Report↗

U.S. Geological Survey science strategy for Arctic Alaska, fiscal years 2022–24

Introduction The United States is an Arctic nation because of Alaska and thus maintains tremendous interests and stewardship responsibilities in the region, especially as the region undergoes substantial environmental transformation. This Arctic Science Strategy is intended to support those interests and responsibilities by expressing the core values, mission, vision, and the broad research goals and priority objectives of the U.S. Geological Survey (USGS) for science coordination in Arctic Alaska. It synthesizes strategic planning activities across the USGS in the Arctic over the next 3-year planning horizon, identifies some major networks of collaboration, and aligns with current research priorities of the Department of the Interior Climate Action Plan, released October 7, 2021 (U.S. Department of the Interior, 2021). Also, in recognition of the rapid pace of Arctic environmental changes and the corresponding need to move with urgency beyond routine patterns of operation, this strategy extends an implementation challenge to staff and colleagues in hopes of reaching for breakthrough results in some target areas of performance.

Alaska↗

Aquatics Systems Branch: transdisciplinary research to address water-related environmental problems

The Aquatic Systems Branch at the Fort Collins Science Center is a group of scientists dedicated to advancing interdisciplinary science and providing science support to solve water-related environmental issues. Natural resource managers have an increasing need for scientific information and stakeholders face enormous challenges of increasing and competing demands for water. Our scientists are leaders in ecological flows, riparian ecology, hydroscape ecology, ecosystem management, and contaminant biology. The Aquatic Systems Branch employs and develops state-of-the-science approaches in field investigations, laboratory experiments, remote sensing, simulation and predictive modeling, and decision support tools. We use the aquatic experimental laboratory, the greenhouse, the botanical garden and other advanced facilities to conduct unique research. Our scientists pursue research on the ground, in the rivers, and in the skies, generating and testing hypotheses and collecting quantitative information to support planning and design in natural resource management and aquatic restoration.

Fact Sheet↗

Accessibility of environmental data for sharing: The role of UX in large cyberinfrastructure projects

Incorporating user experience (UX) testing when creating research cyberinfrastructure is often overlooked, but if left too late, the cost of retrofitting is considerable, and the very clients the cyberinfrastructure was built to serve may be lost. Successfully integrating UX testing into the product development cycle can be difficult but rewarding. This paper describes how UX evaluations were incorporated over ten years of operation of DataONE ( www.dataone.org ), a multi-sector science research cyberinfrastructure project created to support the discovery, access, and sustainability of data about life on Earth and the environment that sustains it. The diverse stakeholders in DataONE include data creators and users such as researchers and government workers across the broad scope of the earth and environmental sciences as well as those who hold and manage data such as libraries and data repositories. Between 2009 and 2019 DataONE members designed and constructed data management tools and services to fulfill the DataONE objectives. To assist in achieving its goals, a participatory design approach was used by establishing several largely volunteer and stakeholder-representative working groups, including the Usability and Assessment Working Group. This Working Group conducted over forty UX evaluations to assess the usability of DataONE products and websites at various stages of the development process. In addition to improving the usability of DataONE products, the UX evaluations fostered community involvement by building trust and engagement with the products being developed. The DataONE UX experience yields several important lessons which will improve the success of other projects. It is our conclusion that UX testing should be a mandatory part of the design of any cyberinfrastructure project.

Ecological Informatics↗

An environmental assessment of hydrocarbons in mid-Atlantic shelf sediments: 1975-1976 USGS-BLM program

During 1975-1976, the U.S. Geological Survey (U.S.G.S.), in conjunction with the Bureau of Land Management and the Virginia Institute of Marine Sciences, carried out an environmental assessment program to establish baseline concentration levels of hydrocarbons in the surface sediments of the Mid-Atlantic Shelf where leasing for petroleum exploration is anticipated. Reported here are the results of the individual hydrocarbon analyses for 150 composite surfacesediment samples.

Open-File Report↗