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USGS2025

Water residence time and water depth influence on nutrient conditions, eutrophication endpoints and habitat quality in backwater lakes of a large floodplain river

Many eutrophication studies focus on the external supply of critical nutrients like nitrogen and phosphorus, but hydrology and geomorphology can enhance or dampen the effects of excessive nutrient supply. We studied six backwater lakes in the Upper Mississippi River that varied in water residence time and water depth. Eutrophication in these systems is responsible for negative impacts such as cyanobacterial blooms and toxicity, and floating plant and algal mats that disrupt recreational water uses. Increasing backwater residence time was associated with more nitrate removal and a greater likelihood of nitrogen limitation, as well as greater accumulations of duckweed. Backwaters with greater depth and lower nitrogen concentration had less likelihood of filamentous algal accumulations. The median water residence time of backwaters with low duckweed (11.7 days) and no filamentous algae (16.9 days) approached the 12-day target to maintain overwintering conditions in backwaters for fisheries survival, supporting that water residence times in this range would likely improve both winter and summer water quality. Mean depth in backwaters with low duckweed and no filamentous algae was ~1.3 m, while shallower backwaters were more likely to produce duckweed and filamentous algae mats. This indicates that deeper backwaters might reduce the likelihood of eutrophication impacts. Natural resource management at the local level may not always be able to answer global and regional threats, but habitat restoration of hydrology and geomorphology can possibly alleviate or reduce large-scale threats at the local level.

Minnesota, Wisconsin↗

USGS1985

Anomalous 13C enrichment in modern marine organic carbon

Marine organic carbon is heavier isotopically (13C enriched) than most land-plant or terrestrial organic C1. Accordingly, ??13C values of organic C in modern marine sediments are routinely interpreted in terms of the relative proportions of marine and terrestrial sources of the preserved organic matter2,3. When independent geochemical techniques are used to evaluate the source of organic matter in Cretaceous or older rocks, those rocks containing mostly marine organic C are found typically to have lighter (more-negative) ??13C values than rocks containing mostly terrestrial organic C. Here we conclude that marine photosynthesis in mid-Cretaceous and earlier oceans generally resulted in a greater fractionation of C isotopes and produced organic C having lighter ??13C values. Modern marine photosynthesis may be occurring under unusual geological conditions (higher oceanic primary production rates, lower PCO2) that limit dissolved CO2 availability and minimize carbon isotope fractionation4. ?? 1985 Nature Publishing Group.

Nature↗

USGS2023

A recruitment niche framework for improving seed-based restoration

As larger tracts of land experience degradation, seed-based restoration (SBR) will be a primary tool to reestablish vegetation and ecosystem function. SBR has advanced in terms of technical and technological approaches, yet plant recruitment remains a major barrier in some systems, notably drylands. There is an unmet opportunity to test science-based approaches to seed mix design and application, based not only on diversity or local provenance, but on the unique recruitment strategies of species. We lay out a framework that uses a quantitative representation of species' recruitment niches to match them to targeted goals (e.g. drought or invasion resistance) and methods (e.g. precision tools and technologies) in SBR. We first describe how to quantify the recruitment niche with seed and seedling traits tied to observed recruitment responses to environmental factors. We then show how a quantified recruitment niche framework can serve as the foundation to address three major restoration challenges: (1) designing forward-looking seed mixes that increase resilience to future climate and disturbance, (2) accounting for natural recovery in SBR planning, and (3) applying precision seeding practices to maximize restoration success. Finally, we demonstrate these ideas with existing data and discuss key challenges to adoption in SBR practice. While the ideas in this framework are based in ecological theory, they will require substantial testing and refinement by scientists engaged in SBR efforts. If this framework is integrated into research agendas, we believe it has the potential to unify and advance diverse elements of seed-based restoration ecology and improve restoration outcomes.

Restoration Ecology↗

USGS2001

Patterns and processes of wetland loss in coastal Louisiana are complex: A reply to Turner 2001. Estimating the indirect effects of hydrologic change on wetland loss: If the Earth is curved, then how would we know it?

The coastal wetlands of Louisiana comprise a vast expanse of marine to freshwater wetland plant communities interspersed w-ith shallow bays and bayous. These wetlands were built by processes associated with the present-day Mississippi and Atchatfalaya River deltas and older distributaries occupied by the river over the past 7,000 }rears. The high rates of wetland loss identified in this system during the 20th century have serious consequences for living resources (Boesch et al. 1994) and coastal residents, and they affect our ability to maintain navigation and flood control. The restoration and management response to this problem must be grounded in a sound understanding of the causative factors. The system has been highly altered by river levees, roads and railway embankments, impoundments, and canals of many dimensions dredged for a variety of purposes. These changes have been imposed on a landscape that is essentially the result of a delicate natural balance between wetland building processes and compaction, subsidence, and sea-level rise. Many now recognize that coastal wetlands can cope with relatively high rates of subsidence and sea-level rise, as long as the processes that ensure wetland sustainability through vertical accumulation of substrate remain unimpaired (Boesch et al. 2000). The challenge facing both the scientific community and coastal resource managers in Louisiana is to look to the future. We must use our understanding of the problem and how it evolved to develop a multi-use ecosystem management plan, and some efforts have been made by state and federal agencies towards this goal (LCWCRTF & WCRA 1998). The present discussions (Turner 1997, 2001; Day et al. 2000; Gosselink 2001) demonstrate the complexity of the issues faced in Louisiana. While such discourse is common in the scientific community where varied approaches and interpretations are a sign of vitality, it is helpful to be clear about the state of knowledge and what levels of uncertainty exist. We seek to clarify some of the issues that have been raised in the discussion, recognizing that our best-available science cannot yet resolve many of them as completely as all would like.

Louisiana↗

USGS1998

Choosing indicators of natural resource condition: A case study in Arches National Park, Utah, USA

Heavy visitor use in many areas of the world have necessitated development of ways to assess visitation impacts. Arches National Park recently completed a Visitor Experience and Resource Protection (VERP) plan. Integral to this plan was developing a method to identify biological indicators that would both measure visitor impacts and response to management actions. The process used in Arches for indicator selection is outlined here as a model applicable to many areas facing similar challenges. The steps were: (1) Vegetation types most used by visitors were identified. Impacted and unimpacted areas in these types were sampled, comparing vegetation and soil factors. (2) Variables found to differ significantly between compared sites were used as potential indicators. (3) Site-specific criteria for indicators were developed, and potential indicators evaluated using these criteria. (4) Chosen indicators were further researched for ecological relevancy. (5) Final indicators were chosen, field tested, and monitoring sites designated. In Arches, indicators were chosen for monitoring annually (soil crust index, soil compaction, number of used social trails and soil aggregate stability) and every five years (vegetation cover and frequency; ground cover; soil chemistry; and plant tissue chemistry).

Environmental Management↗

USGS2000

Applications of imaging spectroscopy data: A case study at Summitville, Colorado

From 1985 through 1992, the Summitville open-pit mine produced gold from lowgrade ore using cyanide heap-leach techniques, a method to extract gold whereby the ore pile is sprayed with water containing cyanide, which dissolves the minute gold grains. Environmental problems due to mining activity at Summitville include significant increases in acidic and metal-rich drainage from the site, leakage of cyanide-bearing solutions from the heap-leach pad into an underdrain system, and several surface leaks of cyanide-bearing solutions into the Wightman Fork of the Alamosa River. In general, drainage from the Summitville mine moves downslope into the Wightman Fork, a small tributary of the Alamosa River, which in turn flows east into the Terrace Reservoir before entering the agricultural lands of the San Luis Valley. The increase in the trace-metal burden of the Alamosa River watershed due to the mining activities at Summitville is of concern to farmers and fisherman, as well as Federal and State of Colorado agencies having responsibility for land stewardship. The environment of the Summitville area is a result of 1) its geologic evolution, that culminated in the formation of precious-metal mineral deposits; and 2) previous metal mining activity. Mining accentuates, accelerates, and pertubates natural geochemical processes. The development of underground workings, open pits, mill tailings, and spoil heaps and the extractive processing of ore enhances the likelihood of releasing chemicals and elements to the surrounding areas and at increased rates relative to unmined areas. Both mined and unmined mineralized areas can produce acid drainage from the formation and movement of highly acidic water rich in heavy metals. This acidic water forms principally through the chemical reaction of oxygenated surface water and shallow subsurface water with rocks that contain sulfide minerals, producing sulphuric acid. Heavy metals can be leached by the acid solution that comes in contact with mineralized rocks, a process that may be enhanced by bacterial action. The resulting fluids may be highly toxic and, when mixed with groundwater, surface water, and soil, may have harmful effects on humans, animals, and plants. Thus, understanding the geologic and hydrologic history of this area is a critical piece of the environmental puzzle in the Summitville area. The Summitville mine operators had ceased active mining and begun environmental remediation, including treatment of the heap-leach pile and installation of a water-treatment facility, when it declared bankruptcy in December 1992 and abandoned the mine site. The U.S. Environmental Protection Agency (EPA) immediately took over the Summitville site under EPA Superfund Emergency Response authority. Summitville has focused public attention on the environmental effects of modern mineral-resource development. Soon after the mine was abandoned, Federal, State, and local agencies, along with Alamosa River water users and private companies, began extensive studies at the mine site and surrounding areas. These studies included analysis of water, soil, livestock and vegetation. The role of the U.S. Geological Survey (USGS) was to provide geologic, hydrologic and agricultural information about the mine and surrounding area and to describe and evaluate the environmental condition of the Summitville mine and the downstream effects of the mine on the San Luis Valley (King 1995).

Colorado↗

USGS1993

A spatial simulation model of hydrology and vegetation dynamics in semi-permanent prairie wetlands

The objective of this study was to construct a spatial simulation model of the vegetation dynamics in semi-permanent prairie wetlands. A hydrologic submodel estimated water levels based on precipitation, runoff, and potential evapotranspiration. A vegetation submodel calculated the amount and distribution of emergent cover and open water using a geographic information system. The response of vegetation to water-level changes was based on seed bank composition, seedling recruitment and establishment, and plant survivorship. The model was developed and tested using data from the Cottonwood Lake study site in North Dakota. Data from semi-permanent wetland P1 were used to calibrate the model. Data from a second wetland, P4, were used to evaluate model performance. Simulation results were compared with actual water data from 1797 through 1989. Test results showed that differences between calculated and observed water levels were within 10 cm 75% of the time. Open water over the past decade ranged from 0 to 7% in wetland P4 and from 0 to 8% in submodel simulations. Several model parameters including evapotranspiration and timing of seedling germination could be improved with more complex techniques or relatively minor adjustments. Despite these differences the model adequately represented vegetation dynamics of prairie wetlands and can be used to examine wetland response to natural or human-induced climate change.

Ecological Applications↗

USGS2013

The relative contribution of methanotrophs to microbial communities and carbon cycling in soil overlying a coal-bed methane seep

Seepage of coal-bed methane (CBM) through soils is a potential source of atmospheric CH 4 and also a likely source of ancient (i.e. 14 C-dead) carbon to soil microbial communities. Natural abundance 13 C and 14 C compositions of bacterial membrane phospholipid fatty acids (PLFAs) and soil gas CO 2 and CH 4 were used to assess the incorporation of CBM-derived carbon into methanotrophs and other members of the soil microbial community. Concentrations of type I and type II methanotroph PLFA biomarkers (16:1ω8c and 18:1ω8c, respectively) were elevated in CBM-impacted soils compared with a control site. Comparison of PLFA and 16s rDNA data suggested type I and II methanotroph populations were well estimated and overestimated by their PLFA biomarkers, respectively. The δ 13 C values of PLFAs common in type I and II methanotrophs were as negative as −67‰ and consistent with the assimilation of CBM. PLFAs more indicative of nonmethanotrophic bacteria had δ 13 C values that were intermediate indicating assimilation of both plant- and CBM-derived carbon. Δ 14 C values of select PLFAs (−351 to −936‰) indicated similar patterns of CBM assimilation by methanotrophs and nonmethanotrophs and were used to estimate that 35–91% of carbon assimilated by nonmethanotrophs was derived from CBM depending on time of sampling and soil depth.

FEMS Microbiology Ecology↗

USGS1996

Environmental setting of benchmark streams in agricultural areas of eastern Wisconsin

This report describes the environmental setting of 20 benchmark streams in agricultural areas of eastern Wisconsin that are part of the Western Lake Michigan Drainages, National Water-Quality Assessment Program. Benchmark streams are defined as those that show minimal adverse effects from human activity, and they were selected on the basis of field reconnaissance and the following criteria: (1) available invertebrate or fisheries data that indicated good to excellent water quality, (2) instream habitat restoration for fisheries enhancement, and (3) land management to protect riparian vegetation. Information gathered from these benchmark sites can be used as a standard of reference to compare the health of other streams in agricultural areas on the basis of aquatic-biota communities, habitat, and water-quality characteristics. The information included in this report serves as background information that will be useful for a series of studies at these benchmark-stream sites in the Western Lake Michigan Drainages study unit as part of the National Water-Quality Assessment Program. Four relatively homogeneous units (RHU's) in agricultural areas that differed in bedrock and surficial geology were selected for study. RHU 1 (clayey surficial deposits over carbonate bedrock) and RHU 3 (sandy-till surficial deposits over carbonate bedrock) are in adjacent agricultural areas in the Southeastern Wisconsin Till Plains ecoregion. RHU 20 (sandy/sand and gravel surficial deposits over igneous and metamorphic bedrock) and RHU 26 (sandy/sand and gravel surficial deposits over sandstone bedrock) are in adjacent areas of agriculture and mixed forests in the North Central Hardwood Forests ecoregion. Differences in land use/land cover, and riparian vegetation and instream habitat characteristics are presented. Summaries of field measurements of water temperature, pH, specific conductance and concentrations of dissolved oxygen, total organic plus ammonia nitrogen, dissolved ammonium, nitrate plus nitrte as nitrogen, total phosphorus, dissolved orthophosphate, and atrazine are listed. Concentrations of dissolved oxygen for the sampled streams ranged from 6 A to 14.3 and met the standards set by the Wisconsin Department of Natural Resources (WDNR) for supporting fish and aquatic life. Specific conductance ranged from 98 to 753 u,Scm with values highest in RHU's 1 and 3, where streams are underlain by carbonate bedrock. Median pH did not vary greatly among the four RHU's and ranged from 6.7 to 8.8 also meeting the WDNR standards. Concentrations of total organic plus ammonia nitrogen, dissolved ammonium, total phosphorus, and dissolved orthophosphate show little variation between streams and are generally low, compared to concentrations measured in agriculturally-affected streams in the same RHU's during the same sampling period. Concentrations of the most commonly used pesticide in the study unit, atrazine, were low in all streams, and most concentrations were below trn 0.1 u,g/L detection limit. Riparian vegetation for the benchmark streams were characterized by lowland species of the native plant communities described by John T. Curtis in the "Vegetation of Wisconsin." Based on the environmental setting and water-quality information collected to date, these streams appear to show minimal adverse effects from human activity.

Wisconsin↗

USGS2015

Wind River subbasin restoration: Annual report of U.S. Geological Survey activities January 2014 through December 2014

Executive Summary The Wind River subbasin in southwest Washington State provides habitat for a population of wild Lower Columbia River steelhead Oncorhynchus mykiss , which are listed as threatened under the Endangered Species Act. No hatchery steelhead have been planted in the Wind River subbasin since 1994, and hatchery adults are estimated to be less than one percent of adults in any year (Thomas Buehrens, Washington Department of Fish and Wildlife, personal communication). Numerous restoration actions have been implemented in the subbasin, including the removal of Hemlock Dam on Trout Creek in 2009. We used Passive Integrated Transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTIS) to investigate life-histories, populations, and efficacy of habitat restoration actions for these steelhead. Data from our study, and companion work by Washington Department of Fish and Wildlife (WDFW), will contribute to Bonneville Power Administration’s (BPA) Research Monitoring and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring ( www.cbfish.org/ProgramStrategy.mvc/ViewProgramStrategySummary/1 ), specifically the sub-strategies of: 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and to Uncertainties Research regarding differing life histories of a wild steelhead population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer 2014, we PIT-tagged steelhead parr in headwater areas of the Wind River subbasin to investigate life-history diversity, specifically to compare fate of those juvenile steelhead that move downstream prior to smolting with those that remain in their natal areas until smolting. A series of instream PTISs monitored movement of these fish. We added a new multi-antenna PTIS on Trout Creek and made improvements to two of our smaller tributary PTISs during 2014. Detections at the instream PTISs showed trends of parr emigration during summer and fall, in addition to the expected movement of parr and smolts in spring. Long-term monitoring of PIT-tagged fish will provide information on contribution of various life-history strategies to smolt production and adult returns, as well as helping to identify factors influencing parr movement. Movements of PIT-tagged adult steelhead were tracked with our instream PTISs. These data will contribute to a better understanding of timing and distribution of spawning by this population of wild steelhead within the Wind River subbasin. Additionally, these data have provided information on timing of adult movements to various parts of the watershed, which is allowing us to assess adult use of tributary watersheds within the Wind River subbasin. These data are contributing to evaluating steelhead response to the removal of Hemlock Dam from Trout Creek. Hemlock Dam, which was located at rkm 2.0 of Trout Creek, was removed in summer 2009 and had contributed to hydrologic impairment of Trout Creek and potentially caused some deterrent to upstream adult steelhead migration. Evaluating restoration efforts is of interest to many managers and agencies so that funding and time are allocated for best results. The evaluation of various life-histories of Lower Columbia River steelhead within the Wind River subbasin provides information to better track populations, and more effectively direct habitat restoration and water allocation planning. Increasingly detailed Viable Salmonid Population information (Crawford and Rumsey 2009), such as that provided by PIT-tagging and instream PTISs networks like those we build and operate in the Wind River subbasin, provide data to better inform policy and management, as life-history strategies and production bottlenecks are identified and understood.

Washington↗

USGS2011

Elk Monitoring Protocol for Lewis and Clark National Historical Park, Version 1.0

Maintaining elk (Cervus elaphus roosevelti) herds that frequent Lewis and Clark National Historical Park (NHP) is central to the park’s purpose of preserving the historic, cultural, scenic, and natural resources. Elk were critical to sustaining the members of the Lewis and Clark expedition by providing food and clothing over the winter of 1805-1806. Today, elk viewing opportunities in the park and surrounding region generate broad appeal with the visiting public, which number over 250,000 per year at the Fort Clatsop visitor center. This protocol describes procedures for monitoring trends in the use of the Fort Clatsop area by Roosevelt elk. Specific objectives of elk monitoring in Lewis and Clark NHP are to measure the relative use and proportion of area used by elk during winter in the Fort Clatsop Unit of the park, and the rate at which elk are sighted from roads in and around the park. Relative use and the proportion of area used by elk are determined from elk fecal pellet surveys conducted every other year in the Fort Clatsop park unit. Pairs of observers visit a systematic array of permanent plots in the fall to clear them of elk fecal pellets, and return to the plots in late winter to count elk fecal pellets that have accumulated during winter. Half of the subplots are counted by two independent observers, which allows for the estimation of relative use and proportion of area occupied by elk with analyses of detection biases that account for unseen elk pellet groups. Standardized road surveys are conducted in and near the Fort Clatsop park unit three or four times monthly during alternate months. Data from road surveys are used to quantify the rate that park visitors would be expected to see elk, when driving the selected set of routes. The monitoring protocol is based on three field seasons of development and testing. The protocol narrative describes the background, rationale, sampling design, field methods, analytical methods, data management, reporting, personnel requirements, and operational requirements for elk monitoring in Lewis and Clark NHP. The sampling design reflects tradeoffs between statistical and ecological considerations, safety, and current budget considerations. The protocol provides adequate power to detect a doubling or halving of elk use in the Fort Clatsop unit and surrounding areas within 15 years. Step-by-step guidance for planning and completing the monitoring tasks are in the attached standard operating procedures (SOPs). Information on the status and trends of elk use in Lewis and Clark NHP will allow park managers to assess the effects on elk of restoration programs within the park, build community partnerships, and identify potential linkages between regional land use changes and elk use of the Park. Lewis and Clark NHP has an active ecological restoration program that aims to recreate, where possible, ecological conditions that Lewis and Clark encountered. The restoration program includes an extensive exotic plant removal program, wetland restoration, and silvicultural treatments that will hasten development of late-seral conditions in recently acquired forest lands of the Fort Clatsop park unit. In the future, monitoring results can be used to test for spatial associations between ecological restoration treatments and relative use by elk. The park also plans to feature results from elk monitoring prominently in its educational outreach activities to help interpret the historical and current ecological context of the Lewis and Clark story, and engender public support for the park mission and management activities. Although NPS does not manage non-park lands, information about trends in the distribution of elk use will be valuable in public outreach and discussions with other partnering agencies and regional private landowners.

Natural Resource Report↗

USGS2004

Population size and natural history of Mariana fruit bats (Chiroptera: Pteropodidae) on Sarigan, Mariana Islands

Based on count results, we estimated the population of Mariana fruit bats ( Pteropus mariannus Desmarest ) on Sarigan, Mariana Islands, to number 150-200 bats in 1999, 185-235 bats in 2000, and about 300-400 bats in 2001. Our results, plus those of two previous surveys, indicate that bat abundance on the island probably remained relatively stable at about 125-235 animals during much of the period from 1983 to 2000, then increased suddenly in 2001, most likely due to immigration from a neighboring island. Sarigan's population differs from those of larger islands in the archipelago by usually having smaller roost sizes, typically 3-75 bats, and large numbers of solitary bats that at times comprise up to half of the population. Colonies and smaller aggregations were composed primarily of harems with multiple females, whereas a nearly equal sex ratio occurred among solitary animals. Colonies roosted in isolated coconut trees in open grasslands and in native forest stands of various sizes, but avoided dense coconut forest. An estimated 30-50% of harem and solitary females possessed young in July 1999. Bats were recorded feeding on just six species of plants, which partly reflects the island's impoverished flora. We speculate that fruit bat abundance on Sarigan is limited primarily by food availability rather than hunting losses, in contrast to some other islands in the Marianas. Our study supports the contention that populations of P. mariannus in the northern Marianas are usually sedentary, but that interisland movements of larger numbers of bats may occur rarely.

Mariana Islands↗

USGS2019

Coastal wetlands: A synthesis

This book and this synthesis address the pressing need for better management of coastal wetlands worldwide because these wetlands are disappearing at an alarming rate; in some countries the loss is 70%–80% in the last 50 years. Managing requires understanding. Although our understanding of the functioning of coastal wetland ecosystems has grown rapidly over the past decade, still much remains to be learned and understood. We have gained insight into the roles of geomorphic processes, hydrologic dynamics, biotic feedback, and disturbance agents in creating and molding a variety of coastal wetland ecosystems across climatic gradients. The variety is expressed not so much in the more obvious differences in vegetation cover, but rather how physical processes both facilitate and constrain a diversity of plant and animal communities. At one level, coastal wetlands are the product of tidal forces and freshwater inputs at the margin of continents. At another level, the plants control the water currents in the tidal creeks draining the wetlands by generating a tidal current asymmetry that controls sediment transport and results in a deep tidal creek surrounded by shallow vegetated wetlands. The vegetation also influences the physics of water and sediment through several other processes including biofilms, bioturbation of sediments, the buffeting of currents and waves, organic enrichment of sediments, and the closing of nutrient cycles. Few ecosystems provide us with so many clear examples of such feedback controls. What we do understand about the structure and functioning of coastal wetlands should provide the theoretical underpinnings for effective management in protecting them for their many contributions to ecosystem goods and services. What we do not understand should compel us to focus our attention and energies toward seeking optimal solutions to some of the most perplexing and urgent problems facing natural resource management.

Book chapter↗

USGS2023

Capturing patterns of evolutionary relatedness with reflectance spectra to model and monitor biodiversity

Biogeographic history can set initial conditions for vegetation community assemblages that determine their climate responses at broad extents that land surface models attempt to forecast. Numerous studies have indicated that evolutionarily conserved biochemical, structural, and other functional attributes of plant species are captured in visible-to-short wavelength infrared, 400 to 2,500 nm, reflectance properties of vegetation. Here, we present a remotely sensed phylogenetic clustering and an evolutionary framework to accommodate spectra, distributions, and traits. Spectral properties evolutionarily conserved in plants provide the opportunity to spatially aggregate species into lineages (interpreted as “lineage functional types” or LFT) with improved classification accuracy. In this study, we use Airborne Visible/Infrared Imaging Spectrometer data from the 2013 Hyperspectral Infrared Imager campaign over the southern Sierra Nevada, California flight box, to investigate the potential for incorporating evolutionary thinking into landcover classification. We link the airborne hyperspectral data with vegetation plot data from 1372 surveys and a phylogeny representing 1,572 species. Despite temporal and spatial differences in our training data, we classified plant lineages with moderate reliability (Kappa = 0.76) and overall classification accuracy of 80.9%. We present an assessment of classification error and detail study limitations to facilitate future LFT development. This work demonstrates that lineage-based methods may be a promising way to leverage the new-generation high-resolution and high return-interval hyperspectral data planned for the forthcoming satellite missions with sparsely sampled existing ground-based ecological data.

Proceedings of the Natural Academy of Sciences↗

USGS2009

Effects of Water-Management Strategies on Water Resources in the Pawcatuck River Basin, Southwestern Rhode Island and Southeastern Connecticut

The Pawcatuck River Basin in southwestern Rhode Island and southeastern Connecticut is an important high-quality water resource for domestic and public supplies, irrigation, recreation, and the aquatic ecosystem. Concerns about the effects of water withdrawals on aquatic habitat in the basin have prompted local, State, and Federal agencies to explore water-management strategies that minimize the effects of withdrawals on the aquatic habitat. As part of this process, the U.S. Geological Survey in cooperation with the U.S. Department of Agriculture Natural Resources Conservation Service and the Rhode Island Water Resources Board completed a study to assess the effects of current (2000-04) and potential water withdrawals on streamflows and groundwater levels using hydrologic simulation models developed for the basin. The major findings of the model simulations are: *Moving highly variable seasonal irrigation withdrawals from streams to groundwater wells away from streams reduces short-term fluctuations in streamflow and increases streamflow in the summer when flows are lowest. This occurs because of the inherent time lag between when water is withdrawn from the aquifer and when it affects streamflow. *A pumped well in the vicinity of small streams indicates that if withdrawals exceed available streamflow, groundwater levels drop substantially as a consequence of water lost from aquifer storage, which may reduce the time wetlands and vernal pools are saturated, affecting the animal and plant life that depend on these habitats. *The effects of pumping on water resources such as ponds, streams, and wetlands can be minimized by relocating pumping wells, implementing seasonal pumping schemes that utilize different wells and pumping rates, or both. *The effects of projected land-use change, mostly from forest to low- and medium density housing, indicate only minor changes in streamflow at the subbasin scale examined; however, at a local scale, high flows could increase, and low flows could decrease as a result of increased impervious area. In some instances, low flows could increase slightly as a result of decreased evapotranspiration from the loss of deeprooted vegetation (forest) associated with development. *In some subbasins where large areas of agricultural lands were converted to low- and medium-density housing, low flows increase because the consumptive domestic water use was projected to be less than consumptive agricultural water use. All agricultural water use was for irrigation purposes and was assumed to be lost from the basin through evapotranspiration.

Circular↗

USGS2006

Evaluating plant invasions from both habitat and species perspectives

We present an approach to quantitatively assess nonnative plant invasions at landscape scales from both habitat and species perspectives. Our case study included 34 nonnative species found in 142 plots (0.1 ha) in 14 vegetation types within the Grand Staircase–Escalante National Monument, Utah. A plot invasion index, based on nonnative species richness and cover, showed that only 16 of 142 plots were heavily invaded. A species invasive index, based on frequency, cover, and number of vegetation types invaded, showed that only 7 of 34 plant species were highly invasive. Multiple regressions using habitat characteristics (moisture index, elevation, soil P, native species richness, maximum crust development class, bare ground, and rock) explained 60% of variation in nonnative species richness and 46% of variation in nonnative species cover. Three mesic habitats (aspen, wet meadow, and perennial riparian types) were particularly invaded (31 of 34 nonnative species studied were found in these types). Species-specific logistic regression models for the 7 most invasive species correctly predicted occurrence 89% of the time on average (from 80% for Bromus tectorum , a habitat generalist, to 93% for Tamarix spp., a habitat specialist). Even with such a modest sampling intensity (<0.1% of the landscape), this multiscale sampling scheme was effective at evaluating habitat vulnerability to invasion and the occurrence of the 7 most invasive nonnative species. This approach could be applied in other natural areas to develop strategies to document invasive species and invaded habitats.

Utah↗

USGS1989

The ecology of hydric hammocks: a community profile

This community profile is one in a series of Fish and Wildlife Service publications compiled to provide a state-of-knowledge synthesis of scientific information and literature on various coastal habitats. The subject of this profile is the hydric hammock, a distinctive type of forested wetland occurring at low elevations along the gulf coast of Florida from Aripeka to St. Marks and at various inland sites in Florida. Relatively little research has been conducted in hydric hammocks, and no thorough effort has been made previously to define this community. Consequently, no consensus has existed about the extent and nature of this community; some published works and active researchers have differed in their judgments about it; and the entity sometimes is ignored and often is lumped with other types of mixed hardwood forests. The purpose of this profile is to establish or clarify an identification and understanding of the hydric-hammock community. Information for the profile was gathered from published and unpublished literature, from persona 1 communication with many technical experts, and from our own fie 1 d experience. The profile includes some new data gathered in the field for the purpose of defining this community. It is hoped that the content and format of the profile will be useful to a broad spectrum of users, including other scientists, students, resource managers and planners, teachers, and interested citizens. The profile includes structural and functional aspects of the community: its physical setting, plant and animal composition and dynamics, interactions of its flora and fauna, and its relationships with other communities.

Florida↗

USGS1968

Geology of the Great Smoky Mountains National Park, Tennessee and North Carolina

The boundary between Tennessee and North Carolina is delimited for about 50 miles in midlength by the crests of the Great Smoky Mountains, which include some of the highest summits in the southeastern United States, and which culminate in Clingmans Dome (alt 6,642 ft). Ramifying spurs and foothills descend northwestward from the State line divide toward the Appalachian Valley in Tennessee, as well as southeastward toward the less regularly disposed mountains of the main part of the Blue Ridge in North Carolina. All the Great Smoky Mountains are heavily forested, the higher summits being covered by spruce and fir, and the lower slopes, by a great variety of hardwoods. Much of this forested mountain wilderness has been set aside for public benefit and enjoyment as Great Smoky Mountains National Park. For most visitors to Great Smoky Mountains National Park, prime attractions are its noble forests, its open coves set gemlike amongst them, the animals of the forests and coves, and the relics of the mountaineers who have made their homes there. Only now and then, when the visitor's trail through the forest must circuit a rough ledge of rock, can he realize that the forest and the soil on which it grows are a mere veneer—a thin cover over the ancient rocks of the mountains. In the Yosemite, the Grand Canyon, and most of our other national parks in the West, the situation is very different; there, the impact of the bedrock of the parks is overwhelming in relation to the plants and animals that live on the bedrock. The terrain of the Great Smoky Mountains, their soils, unconsolidated deposits, and details of slope sculpture tell a geologic story of the last few million years of earth history, a story dominated by the drastic fluctuations of the ice-age climate. Although the mountains themselves were not covered with glacial ice, the climate at this latitude approached glacial conditions, and the mountaintops were occasionally above tree line. Deposits of debris that resulted from the associated accelerated erosion of the hillsides during glacial intervals and the deeply weathered soils produced during the episodes of warm and humid interglacial climate are evident at many places. These climatic oscillations also controlled the flora and fauna. The complex process of adjustment of plants and animals to the prevailing climate is one of the factors that has produced their present great diversity. This latest phase of the geologic history is not further treated in this publication. Maps showing the younger deposits and interpretations based on them are included in the several recent U.S. Geological Survey Professional Papers referred to below. Our concern in this text and its accompanying map (pl. 1) is with the bedrock geology of the Great Smoky Mountains and their surroundings, and with the story of far earlier times in earth history—when there were no Great Smoky Mountains, and when the geography and the landscape were very different from those today. Because of the forest cover and the scantiness of rock outcrops, the bedrock geology of the Great Smoky Mountains is not easy to decipher, and this difficulty is compounded by the enigmatic nature of most of the rocks themselves. It thus has come about that knowledge of the geology of the mountains has lagged behind that in surrounding regions. Following pioneer investigations of Safford (1869) and of Keith (1895, 1896), little further geologic study of the mountains was made until after World War II. The present text and map summarize the results of the more recent investigations, details of which are given at much greater length in a set of U.S. Geological Survey Professional Papers (Hamilton, 1961; Hadley and Goldsmith, 1963; King, 1964; Neuman and Nelson, 1965).

North Carolina, Tennessee↗