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At least 1,261 records · Page 70Linked to original sources

A genomic tool to tackle cryptic diversity demonstrates the potential for off-target use of GT-seq panels

A comprehensive understanding of life history is vital to successful species conservation and management. When different life history stages are accompanied by considerable morphological or cryptic variation, such as the egg and larval phases exhibited by most fishes, genomic tools are essential for identifying species so that early-life ecology questions can be studied. Genotyping-in-thousands by sequencing (GT-seq) has recently emerged as a targeted and efficient approach for species identification. We leveraged existing genomic and transcriptomic data to develop a GT-seq panel capable of differentiating the members of the Coregonus artedi complex, a radiation of salmonids in the Laurentian Great Lakes whose members are indistinguishable with mitochondrial DNA barcoding loci and are the focus of bi-national conservation initiatives. Our panel of 494 loci was able to assign fishes in the C. artedi complex to species and lake. We examined cross-amplification in other coregonines with overlapping distributions and found that congeneric Lake Whitefish ( C. clupeaformis ) cross-amplified at 94% of loci and confamilial Round and Pygmy Whitefish ( Prosopium spp.) cross-amplified at 42% and 38% of loci, respectively. We adapted bioinformatic probes to account for Prosopium -specific variants including 22 new SNPs and developed a whitelist of 428 SNPs capable of distinguishing these whitefishes. Finally, we demonstrated performance by identifying 3,066 coregonine larvae and juveniles collected in spring 2019-2021 from Lake Superior. These results hold promise for future insights into the species-specific ecology of early life coregonines and demonstrate the flexibility of GT-seq panels, which may cross-amplify hundreds of informative genome-wide loci in related taxa.

BioRxiv↗

The Everglades Depth Estimation Network (EDEN) surface-water interpolation model, version 3

The Everglades Depth Estimation Network (EDEN) is an integrated network of water-level gages, interpolation models that estimate daily water-level data at ungaged locations, and applications that generate derived hydrologic data across the freshwater part of the Greater Everglades landscape. Version 3 (V3) of the EDEN interpolation surface-water model is the most recent update, replacing the version 2 (V2) model released in 2011. The primary revision for the V3 model is the switch to the R programming language to create a more efficient and portable EDEN code relative to V2, without reliance on proprietary software. Using R, the interpolation script runs over 10 times faster and is more easily updated, for example, to accommodate changes in the gage network or to incorporate R software updates. Additional revisions made for the V3 model include updates to the interpolation model, the gage network, and groundwater-level estimations. The EDEN model domain in the Greater Everglades and Big Cypress National Preserve is divided into subdomains that are based on hydrologic boundaries. In the V3 model, the number of subdomains was increased from five to eight, which allows hydrologic boundaries, such as levees and canals, to be better represented in the interpolation scheme. Five pseudogages were added to constrain the water-level surface at subdomain boundaries. Changes made to the water-level gage network between the implementation of the V2 and V3 models are incorporated, and groundwater-level estimations are added, which are important information for hydrologic and ecological studies. Summary model performance statistics indicate similar accuracy in water-level surfaces generated by the V3 and V2 models, with a root mean square error of 4.78 centimeters for both interpolation models against independent water-level measurements. Providing stability and continuity for the EDEN user community, the V3 model closely replicates the V2 model, with a root mean square difference of 3.87 centimeters for interpolated surfaces from April 1, 2014, to March 31, 2018. The additional groundwater levels provide a realistic estimate of the saturated groundwater surface continuous with the surface-water surface for Water Conservation Areas 2A and 2B from 2000 to 2011. This continuous surface is a more accurate estimation of the spatial distribution of water in the hydrologic system than before, providing needed information for ecological studies in areas where depth to water table affects habitats. Development of the EDEN V3 model advances the tools available to scientists and resource managers for guiding large-scale field operations, describing hydrologic changes, and supporting biological and ecological assessments.

Florida↗

Trust Species and Habitat Branch: using the innovative approaches of today to conserve biodiversity for tomorrow

Some of the biggest challenges facing wildlife today are changes to their environment from both natural and anthropogenic causes. Natural resource managers, planners, policy makers, industry and private landowners must make informed decisions and policies regarding management, conservation, and restoration of species, habitats, and ecosystem function in response to these changes. Specific needs include (1) a better understanding of population status and trends; (2) understanding of species’ habitat needs and roles in supporting ecosystem functions; (3) the ability to assess species’ responses to environmental changes and predict future responses; and (4) the development of innovative techniques and tools to better understand, minimize or prevent any unintended consequences of environmental change. The Trust Species and Habitats Branch of the Fort Collins Science Center includes a diverse group of scientists encompassing both traditional and specialized expertise in wildlife biology, ecosystem ecology, quantitative ecology, disease ecology, molecular genetics, and stable isotope geochemistry. Using our expertise and collaborating with others around the world, our goal is to provide the information, tools, and technologies that our partners need to support conservation, management, and restoration of terrestrial vertebrate populations, habitats, and ecosystem function in a changing world.

Fact Sheet↗

NABat ML: Utilizing deep learning to enable crowdsourced development of automated, scalable solutions for documenting North American bat populations

Bats play crucial ecological roles and provide valuable ecosystem services, yet many populations face serious threats from various ecological disturbances. The North American Bat Monitoring Program (NABat) aims to use its technology infrastructure to assess status and trends of bat populations, while developing innovative and community-driven conservation solutions. Here, we present NABat ML , an automated machine-learning algorithm that improves the scalability and scientific transparency of NABat acoustic monitoring. This model combines signal processing techniques and convolutional neural networks (CNNs) to detect and classify recorded bat echolocation calls. We developed our CNN model with internet-based computing resources (‘cloud environment’), and trained it on >600,000 spectrogram images. We also incorporated species range maps to improve the robustness and accuracy of the model for future ‘unseen’ data. We evaluated model performance using a comprehensive, independent, holdout dataset. NABat ML successfully distinguished 31 classes (30 species and a noise class) with overall weighted-average accuracy and precision rates of 92%, and ≥90% classification accuracy for 19 of the bat species. Using a single cloud-environment computing instance, the entire model training process took <16 h. Synthesis and applications . Our convolutional neural network (CNN)-based model, NABat ML , classifies 30 North American bat species using their recorded echolocation calls with an overall accuracy of 92%. In addition to providing highly accurate species-level classification, NABat ML and its outputs are compatible with Bayesian and other statistical techniques for measuring uncertainty in classification. Our model is open-source and reproducible, enabling future implementations as software on end-user devices and cloud-based web applications. These qualities make NABat ML highly suitable for applications ranging from grassroots community science initiatives to big-data methods developed and implemented by researchers and professional practitioners. We believe the transparency and accessibility of NABat ML will encourage broad-scale participation in bat monitoring, and enable development of innovative solutions needed to conserve North American bat species.

Journal of Applied Ecology↗

Book review: Ecology of Dakota landscapes: Past, present, and future, by W. Carter Johnson and Dennis H. Knight

“Ecology of Dakota Landscapes” is an excellent example of fusing observation and scientific studies to describe the origins and development of the landscape of North and South Dakota, the impact of European settlement, the introduction of agriculture to the area, predictions for the future in the face of a changing climate, and a scientific framework for conservation and sustainability. Johnson and Knight bring to this book a personal fascination with this landscape. Their decades of experience and knowledge of the ecosystems of the Dakotas is exhibited in the well written and copiously illustrated thirteen chapters. This book blends observation, geology, biology, ecology, history, the transformation of this landscape by European settlement, and identifies the challenges that will be faced with climate change. Johnson and Knight are master storytellers that allow them to present these important concepts and ideas to a general audience.

Prairie Naturalist↗

Natal location influences movement and survival of a spatially structured population of snail kites

Despite the accepted importance of the need to better understand how natal location affects movement decisions and survival of animals, robust estimates of movement and survival in relation to the natal location are lacking. Our study focuses on movement and survival related to the natal location of snail kites in Florida and shows that kites, in addition to exhibiting a high level of site tenacity to breeding regions, also exhibit particular attraction to their natal region. More specifically, we found that estimates of movement from post-dispersal regions were greater toward natal regions than toward non-natal regions (differences were significant for three of four regions). We also found that estimates of natal philopatry were greater than estimates of philopatry to non-natal regions (differences were statistically significant for two of four regions). A previous study indicated an effect of natal region on juvenile survival; in this study, we show an effect of natal region on adult survival. Estimates of adult survival varied among kites that were hatched in different regions. Adults experienced mortality rates characteristic of the region occupied at the time when survival was measured, but because there is a greater probability that kites will return to their natal region than to any other regions, their survival was ultimately influenced by their natal region. In most years, kites hatched in southern regions had greater survival probabilities than did kites hatched in northern regions. However, during a multiregional drought, one of the northern regions served as a refuge from drought, and during this perturbation, survival was greater for birds hatched in the north. Our study shows that natal location may be important in influencing the ecological dynamics of kites but also highlights the importance of considering temporal variation in habitat conditions of spatially structured systems when attempting to evaluate the conservation value of habitats.

Oecologia↗

A conceptual framework and methods for studying the connectivity of fishes

Connectivity is a multifaceted concept that has important implications for the management and conservation of marine and freshwater fishes. We developed a conceptual framework that encompasses multiple, interrelated categories of connectedness, including landscape (e.g., structural, functional) connectivity and ecological (e.g., trophic, genetic, demographic) connectivity, that together shape the flow of organisms, energy and information across ecosystems. We also synthesised six key methods that can be used to study connectivity of fishes: (1) telemetry, including satellite, acoustic, radio and passive integrated transponders (PIT), (2) mark-recapture, (3) environmental tracers, including stable isotopes and otolith-microchemistry, (4) genetics, (5) community structure analysis and (6) emerging technologies and tools (e.g., remote sensing and artificial intelligence). For each method, we describe the categories of connectivity it can assess and provide real-world examples where they have been effectively used. We also identify limitations of each method. This article highlights the diverse and evolving toolbox of methods used to assess fish connectivity, underscoring the need for continued collaboration, innovation and integration of new approaches to refine our understanding and address remaining challenges in this critical area of aquatic ecology and fisheries management.

Fish and Fisheries↗

International meeting on sarcoptic mange in wildlife, June 2018, Blacksburg, Virginia, USA

Sarcoptic mange is a globally distributed disease caused by the burrowing mite Sarcoptes scabiei , which also causes scabies in humans. A wide and increasing number of wild mammal species are reported to be susceptible to mange; however, the impacts of the disease in wildlife populations, mechanisms involved in its eco-epidemiological dynamics, and risks to public and ecosystem health are still unclear. Major gaps exist concerning S. scabiei host specificity and the mechanisms involved in the different presentations of the disease, which change between individuals and species. Immunological responses to the mite may have a relevant role explaining these different susceptibilities, as these affect the clinical signs, and consequently, the severity of the disease. Recently, some studies have suggested sarcoptic mange as an emerging threat for wildlife, based on several outbreaks with increased severity, geographical expansions, and novel wild hosts affected. Disease ecology experts convened for the “International Meeting on Sarcoptic Mange in Wildlife” on 4–5 June 2018, hosted by the Department of Fish and Wildlife Conservation at Virginia Tech in Blacksburg, Virginia, USA. The meeting had a structure of (i) pre-workshop review; (ii) presentation and discussions; and (iii) identification of priority research questions to understand sarcoptic mange in wildlife. The workgroup concluded that research priorities should be on determining the variation in modes of transmission for S. scabiei in wildlife, factors associated with the variation of disease severity among species, and long-terms effects of the mange in wildlife populations. In this note we summarize the main discussions and research gaps identified by the experts.

Parasites & Vectors↗

Estimation of unaltered daily mean streamflow at ungaged streams of New York, excluding Long Island, water years 1961-2010

The lakes, rivers, and streams of New York State provide an essential water resource for the State. The information provided by time series hydrologic data is essential to understanding ways to promote healthy instream ecology and to strengthen the scientific basis for sound water management decision making in New York. The U.S. Geological Survey, in cooperation with The Nature Conservancy and the New York State Energy Research and Development Authority, has developed the New York Streamflow Estimation Tool to estimate a daily mean hydrograph for the period from October 1, 1960, to September 30, 2010, at ungaged locations across the State. The New York Streamflow Estimation Tool produces a complete estimated daily mean time series from which daily flow statistics can be estimated. In addition, the New York Streamflow Estimation Tool provides a means for quantitative flow assessments at ungaged locations that can be used to address the objectives of the Clean Water Act&mdash;to restore and maintain the chemical, physical, and biological integrity of the Nation&rsquo;s waters. The New York Streamflow Estimation Tool uses data from the U.S. Geological Survey streamflow network for selected streamgages in New York (excluding Long Island) and surrounding States with shared hydrologic boundaries, and physical and climate basin characteristics to estimate the natural unaltered streamflow at ungaged stream locations. The unaltered streamflow is representative of flows that are minimally altered by regulation, diversion, or mining, and other anthropogenic activities. With the streamflow network data, flow-duration exceedance probability equations were developed to estimate unaltered streamflow exceedance probabilities at an ungaged location using a methodology that equates streamflow as a percentile from a flow-duration curve for a particular day at a hydrologically similar reference streamgage with streamflow as a percentile from the flow-duration curve for the same day at an ungaged location. The reference streamgage is selected using map correlation, a geostatistical method in which variogram models are developed that correlate streamflow at one streamgage with streamflows at all other locations in the study area. Regression equations used to predict 17 flow-duration exceedance probabilities were developed to estimate the flow-duration curves at ungaged locations for New York using geographic information system-derived basin characteristics. A graphical user interface, with an integrated spreadsheet summary report, has been developed to estimate and display the daily mean streamflows and statistics and to evaluate different water management or water withdrawal scenarios with the estimated monthly data. This package of regression equations, U.S. Geological Survey streamgage data, and spreadsheet application produces an interactive tool to estimate an unaltered daily streamflow hydrograph and streamflow statistics at ungaged sites in New York. Among other uses, the New York Streamflow Estimation Tool can assist water managers with permitting water withdrawals, implementing habitat protection, estimating contaminant loads, or determining the potential affect from chemical spills.

New York↗

Multi-resource analysis: A proof of concept study of natural resource tradeoffs in the Piceance Basin, Colorado, using the net resources assessment (NetRA) decision support tool

Executive Summary The U.S. Geological Survey (USGS) is developing a multi-resource analysis (MRA) line of products to inform land-use decision makers. Specifically, MRA products will integrate scientific information, include considerations for natural resource interrelations, and quantify the effects of resource management decisions in biophysical, economic, and societal terms. As part of the establishment of the MRA, the USGS, in collaboration with the University of New Mexico, has developed the Net Resources Assessment (NetRA) decision support tool. As a proof of concept analysis, the NetRA was applied to the Piceance basin in Colorado in a hypothetical example to illustrate how resource managers could use the NetRA to consider tradeoffs of natural resources among alternative development plans and land cover patterns within a geographic region. The NetRA is a policy-relevant approach to assess the availability of multiple natural resources. It is an analytical toolset that may be used to examine the spatiotemporal relations between development of energy and mineral resources and delivery of biological natural resources. The NetRA operates at multiple map scales and contains a set of integrated, compatible submodels with specific data requirements for natural resource stocks, engineering economics, biophysical, and ecological data for ecosystem services stocks, market prices, regulations, and nonmarket values. The NetRA includes an explicit process to consider the interdependence between development and conservation, which is a crucial consideration in land-management and land-use decisions. The NetRA is used to estimate an expected net resource value (NRV). The NRV is the expected, present value, economic benefit from the extraction of a resource (for example, natural gas) minus the total cost of production, which is the aggregation of the development, production, and social costs. Social costs include private costs plus any external costs. There can be external social benefits associated with natural gas production, such as increased demand for locally produced goods and increased employment in the local area through backward and forward linkages of natural gas production. The NRV is used to compare development outcomes (scenarios) from a range of exploration and development plans for cumulative energy production. The Piceance basin application of the NetRA uses the NRV to assess the tradeoff between continuous natural gas extraction and the effects to the local populations of Odocoileus hemionus (mule deer) and aquatic species and to consumptive water uses for an area the size and resolution of a USGS energy resource assessment unit. In the proof of concept simulation, the 2.9-square-mile-area of USGS oil and gas assessment unit 50200263 (Piceance basin continuous gas unit of the Mesaverde Total Petroleum System) was gridded into 588 cells. From this area, seven clusters with potential for development and three that cannot be developed were identified; the three clusters that cannot be developed were identified as wilderness study areas, areas of critical environmental concern, and national forests. On the basis of these criteria, there are 118 cells unsuitable for development in the oil and gas assessment unit: 84 are in national forests, 23 are areas of critical environmental concern, and 11 are wilderness study areas. The remaining cells in the oil and gas assessment unit can be developed on both private and public lands. Two scenarios were considered that are distinguished as plan 1 and plan 2. Plan 1 keeps the amount of land disturbance unchanged and limits the number of development locations to 140 grid cells for the production period, which constrains the amount of the energy resources available for development; the plan requires the usage of the Bureau of Land Management (BLM) unsuitability criteria. Plan 2 also limits the number of development locations to 140 grid cells for the production period but provides a constant volume of energy production by increasing the density of well pads within the cells. The effects of plan 2 to the NRV when there are five wells per pad and five pads per square mile happen mostly in the first 5 years of development, even though the effects on the population of mule deer continue in later years. This outcome is the result of the upfront development and investment costs and the initial effect to the ecosystem services.

Colorado↗

Temporal patterns of structural sagebrush connectivity from 1985 to 2020

The sagebrush biome within the western United States has been reshaped by disturbances, management, and changing environmental conditions. As a result, sagebrush cover and configuration have varied over space and time, influencing processes and species that rely on contiguous, connected sagebrush. Previous studies have documented changes in sagebrush cover, but we know little about how the connectivity of sagebrush has changed over time and across the sagebrush biome. We investigated temporal connectivity patterns for sagebrush using a time series (1985–2020) of fractional sagebrush cover and used an omnidirectional circuit algorithm to assess the density of connections among areas with abundant sagebrush. By comparing connectivity patterns over time, we found that most of the biome experienced moderate change; the amount and type of change varied spatially, indicating that areas differ in the trend direction and magnitude of change. Two different types of designated areas of conservation and management interest had relatively high proportions of stable, high-connectivity patterns over time and stable connectivity trends on average. These results provide ecological information on sagebrush connectivity persistence across spatial and temporal scales that can support targeted actions to address changing structural connectivity and to maintain functioning, connected ecosystems.

Western United States↗

Navigating the science-policy interface

As a wildlife population ecologist who wants to conduct useful science, I find the Endangered Species Act (ESA), like other federal wildlife statutes, an intriguing read. The topic is in my wheelhouse—fish, wildlife, and plants, with a focus at the population and species levels. There is an emphasis on science, in fact, the “best scientific and commercial data available.” And there are intriguing questions: what threats does a species face? What habitat would be critical for its survival? Could any federal actions put the species or critical habitat in greater peril? I am not alone in this attraction. Hundreds of scientists continue to consider the types of scientific analysis suggested by the ESA. The enthusiasm is palpable. If the first cursory read of the ESA is intriguing to me as a scientist, the second close read is tantalizing—I realize that something very attractive is just out of reach. I know how to estimate the probability of extinction, but I do not know what “in danger of extinction” means. I know how to evaluate the incremental change in status that might arise from some level of proposed take, but I do not know what “is not likely to jeopardize the continued existence” of a species means. The standards expressed in the statute are not stated in purely scientific terms. Thus, ESA decisions cannot be based solely on science, and require additional policy interpretation. Clarity about these policy interpretations—even awareness that they are needed—can be hard to find, leaving a gap between what I can provide as a scientist and what an ESA decision maker needs. This awareness of the interaction between science and policy is also occurring in the larger field of conservation science, where there has been an increasing recognition of a research-implementation gap, the need for actionable science, and the promise of translational ecology. All of these terms emphasize that science alone does not result in action; instead, action arises out of decisions that are informed both by science and by values. At the interface of science and policy, a scientist can deliver relevant knowledge, and a decision maker can explain the policy context in which that science is needed. As a scientist wanting to conduct useful science, I crave this two-way conversation. But how can this conversation be structured in a meaningful and appropriate way? In this chapter, I explore how decision analysis can be used to navigate the science-policy interface for ESA decisions. Decision analysis is a large, well-established field that studies how decisions are made and how they could be made, with explicit attention given to clarifying and separating the values-based and science-based elements of a decision; identifying the impediments that make a decision difficult; and providing tools to overcome those impediments. There have been concerted efforts to apply formal decision analysis to ESA decisions, but the practice is not yet widespread across both the U.S. Fish and Wildlife Service and the National Marine Fisheries Service (the Services). The chapter begins with an introduction to decision analysis and how it seeks to bridge the science-policy interface. In subsequent sections, I explore how a decision analyst might frame listing and reclassification decisions, recovery planning, section 7 consultation, budget allocations, and a few other ESA decisions, with an emphasis on two questions: for each type of decision, what policy clarifications does the decision maker need to make; and knowing the policy context, what type of scientific assessment is needed. In the final discussion, I identify common themes among the types of decisions, and offer thoughts on how decision analysis could be more widely used to integrate science into ESA decisions.

Book chapter↗

Parasite‐mediated competition limits dominant cervid competitor

Species interactions structure ecological communities through direct and indirect pathways with ecosystem-wide implications. Despite mounting interest in the importance of indirect interactions, empirical evidence remains limited. Here, we demonstrate the critical role of parasite-mediated competition in driving community outcomes in a multi-species system of conservation and management concern. We leveraged 2 years of detection/non-detection data of moose ( Alces alces ) and white-tailed deer ( Odocoileus virginianus ) and parasite loads in faecal samples within a hierarchical abundance-mediated interaction model to test hypotheses regarding interactions between these cervids and their shared parasites ( Parelaphostrongylus tenuis , Fascioloides magna ). We demonstrate that moose occupancy was limited by parasite-mediated competition, with no evidence of population-level effects of direct competitive interactions between moose and white-tailed deer. Such evidence of the importance of indirect interactions and resulting community outcomes is critical for species conservation and managing range contractions due to increasing pressures from habitat loss, disease and climate change.

New York↗

Predicting phenology by integrating ecology, evolution and climate science

Forecasting how species and ecosystems will respond to climate change has been a major aim of ecology in recent years. Much of this research has focused on phenology – the timing of life‐history events. Phenology has well‐demonstrated links to climate, from genetic to landscape scales; yet our ability to explain and predict variation in phenology across species, habitats and time remains poor. Here, we outline how merging approaches from ecology, climate science and evolutionary biology can advance research on phenological responses to climate variability. Using insight into seasonal and interannual climate variability combined with niche theory and community phylogenetics, we develop a predictive approach for species’ reponses to changing climate. Our approach predicts that species occupying higher latitudes or the early growing season should be most sensitive to climate and have the most phylogenetically conserved phenologies. We further predict that temperate species will respond to climate change by shifting in time, while tropical species will respond by shifting space, or by evolving. Although we focus here on plant phenology, our approach is broadly applicable to ecological research of plant responses to climate variability.

Global Change Biology↗

New ecological knowledge and practices for society and sustainability

As attributes of the Earth's ecosystems shift in the face of human impact and sustainability of ecosystem services becomes less certain, one important tool at the disposal of the scientific community and other groups is a blueprint for understanding, evaluating, and communicating the value of ecological services. The blueprint presented here is based on (1) an examination of the ecological and societal trade-offs accompanying any given action, (2) revised methods of communication, and (3) coordination of actions at many different scales. The Mexican National Commission for the Knowledge and Use of Biodiversity (CONABIO) is a good example of a demand-driven &ldquo;bridging institution&rdquo; between academia, government, and civil society, and it works to collect and convert scientific information into information for policy, management, and conservation. Intergovernmental organizations like the United Nations Educational, Scientific and Cultural Organization (UNESCO) are well placed to facilitate such coordination at the international level, through their work with member states. Through collaboration with the constituencies of such organizations as the Ecological Society of America, the blueprint described below has the potential to become an important tool for assessing and managing threats to ecosystem services that are essential to life.

Frontiers in Ecology and the Environment↗

Progress Report: Stratton Ecological Research Site - An Experimental Approach to Assess Effects of Various Grazing Treatments on Vegetation and Wildlife Communities Across Managed Burns and Habitat Controls

Understanding how management practices affect wildlife is fundamental to wise decisions for conservation of public lands. Prescribed fire and grazing timing are two management tools frequently used within publicly owned sagebrush ecosystems. We conducted a variety of surveys in order to assess the impacts of grazing timing strategies (early summer before peak green-up, mid-summer at peak green-up, and late summer after peak green-up) in conjunction with prescribed fire on avian and small mammal populations in a high-elevation sagebrush ecosystem. Avian surveys resulted in a large detection sample size for three bird species: Brewer's sparrow (Spizella breweri), horned lark (Eremophila alpestris), and vesper sparrow (Pooecetes gramineus). Brewer's sparrows had the lowest number of detections within the mid-summer grazing treatment compared to early and late summer grazing treatments, while horned larks and vesper sparrows had higher detection frequencies within the late summer grazing treatment. Summer and fall sage-grouse (Centrocercus urophasianus) pellet counts revealed that the greatest over-winter and over-summer use by sage-grouse occurred within the early summer grazing treatment with minimal use of burn treatment areas across all grazing treatments. Deer-mice (Peromyscus maniculatus) represented approximately 90 percent of small mammals captured and were most prevalent within the mid-summer grazing treatment. Sagebrush cover was greatest within the mid-summer grazing treatment. We monitored 50 and 103 nests in 2007 and 2008, respectively. The apparent success rate for shrub-obligate nesting species was 58 percent in 2007 and 63 percent in 2008. This research will support management of sagebrush ecosystems by providing public land managers with direct comparisons of wildlife response to management regimes.

Open-File Report↗

Evidence and opportunities for integrating landscape ecology into natural resource planning across multiple-use landscapes

Enhancing natural resource management has been a focus of landscape ecology since its inception, but numerous authors argue that landscape ecology has not yet been effective in achieving the underlying goal of planning and designing sustainable landscapes. We developed nine questions reflecting the application of fundamental research topics in landscape ecology to the landscape planning process and reviewed two recent landscape-scale plans in western North America for evidence of these concepts in plan decisions. Both plans considered multiple resources, uses, and values, including energy development, recreation, conservation, and protection of cultural and historic resources. We found that land use change and multiscale perspectives of resource uses and values were very often apparent in planning decisions. Pattern-process relationships, connectivity and fragmentation, ecosystem services, landscape history, and climate change were reflected less frequently. Landscape sustainability was considered only once in the 295 decisions reviewed, and outputs of landscape models were not referenced. We suggest six actionable opportunities for further integrating landscape ecology concepts into landscape planning efforts: 1) use landscape sustainability as an overarching goal, 2) adopt a broad ecosystem services framework, 3) explore the role of landscape history more comprehensively, 4) regularly consider and accommodate potential effects of climate change, 5) use landscape models to support plan decisions, and 6) promote a greater presence of landscape ecologists within agencies that manage large land bases and encourage active involvement in agency planning efforts. Together these actions may improve the defensibility, durability, and sustainability of landscape plan decisions.

Current Landscape Ecology Reports↗

Post-fire vegetation response in a repeatedly burned low-elevation sagebrush steppe protected area provides insights about resilience and invasion resistance

Sagebrush steppe ecosystems are threatened by human land-use legacies, biological invasions, and altered fire and climate dynamics. Steppe protected areas are therefore of heightened conservation importance but are few and vulnerable to the same impacts broadly affecting sagebrush steppe. To address this problem, sagebrush steppe conservation science is increasingly emphasizing a focus on resilience to fire and resistance to non-native annual grass invasion as a decision framework. It is well-established that the positive feedback loop between fire and annual grass invasion is the driving process of most contemporary steppe degradation. We use a newly developed ordinal zero-augmented beta regression model fit to large-sample vegetation monitoring data from John Day Fossil Beds National Monument, USA, spanning 7 years to evaluate fire responses of two native perennial foundation bunchgrasses and two non-native invasive annual grasses in a repeatedly burned, historically grazed, and inherently low-resilient protected area. We structured our model hierarchically to support inferences about variation among ecological site types and over time after also accounting for growing-season water deficit, fine-scale topographic variation, and burn severity. We use a state-and-transition conceptual diagram and abundances of plants listed in ecological site reference conditions to formalize our hypothesis of fire-accelerated transition to ecologically novel annual grassland. Notably, big sagebrush ( Artemisia tridentata ) and other woody species were entirely removed by fire. The two perennial grasses, bluebunch wheatgrass ( Pseudoroegneria spicata ) and Thurber's needlegrass ( Achnatherum thurberianum ) exhibited fire resiliency, with no apparent trend after fire. The two annual grasses, cheatgrass ( Bromus tectorum ) and medusahead ( Taeniatherum caput-medusae ), increased in response to burn severity, most notably medusahead. Surprisingly, we found no variation in grass cover among ecological sites, suggesting fire-driven homogenization as shrubs were removed and annual grasses became dominant. We found contrasting responses among all four grass species along gradients of topography and water deficit, informative to protected-area conservation strategies. The fine-grained influence of topography was particularly important to variation in cover among species and provides a foothold for conservation in low-resilient, aridic steppe. Broadly, our study demonstrates how to operationalize resilience and resistance concepts for protected areas by integrating empirical data with conceptual and statistical models.

Oregon↗