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At least 1,261 records · Page 70Linked to original sources
USGS2003

Probabilistic assessment methodology for continuous-type petroleum accumulations

The analytic resource assessment method, called ACCESS (Analytic Cell-based Continuous Energy Spreadsheet System), was developed to calculate estimates of petroleum resources for the geologic assessment model, called FORSPAN, in continuous-type petroleum accumulations. The ACCESS method is based upon mathematical equations derived from probability theory in the form of a computer spreadsheet system. ?? 2003 Elsevier B.V. All rights reserved.

International Journal of Coal Geology↗
USGS2001

Habitat evaluation using GIS a case study applied to the San Joaquin Kit Fox

Concern over the fate of plant and animal species throughout the world has accelerated over recent decades. Habitat loss is considered the main culprit in reducing many species' abundance and range, leading to numerous efforts to plan and manage habitat preservation. Our work uses Geographic Information Systems (GIS) data and modeling to define a spatially explicit analysis of habitat value, using the San Joaquin Kit Fox (Vulpes macrotis mutica) of California (USA) as an example. Over the last 30 years, many field studies and surveys have enhanced our knowledge of the life history, behavior, and needs of the kit fox, which has been proposed as an umbrella or indicator species for grassland habitat in the San Joaquin Valley of California. There has yet been no attempt to convert much of this field knowledge into a model of spatial habitat value useful for planning purposes. This is a significant omission given the importance and visibility of the imperiled kit fox and increasing trends toward spatially explicit modeling and planning. In this paper we apply data from northern California to derive a small-cell GIS raster of habitat value for the kit fox that incorporates both intrinsic habitat quality and neighborhood context, as well the effects of barriers such as roads. Such a product is a useful basis for assessing the presence and amounts of good (and poor) quality habitat and for eventually constructing GIS representations of viable animal territories that could be included in future reserves. ?? 2001 Elsevier Science B.V.

Landscape and Urban Planning↗
USGS2002

Heavy mineral provinces of the Palos Verdes margin, southern California

Natural sources of sediment for the Palos Verdes margin, southern California, have been augmented by effluent discharged from Los Angeles County Sanitation District's sewage-treatment facility and by the reactivation of the Portuguese Bend landslide. Heavy minerals in very fine and fine sand (63-250 ??m) from beach and shelf sites off the Palos Verdes Peninsula distinguish effluent-affected sediment from unaffected deposits, and track the sediment contributed by the Portuguese Bend landslide. Heavy minerals also identify heterogeneous sediment sources for the nearshore zone and relate outer-shelf sediment to depositional cells north and south of the area.

Continental Shelf Research↗
USGS2003

Modeling white sturgeon movement in a reservoir: The effect of water quality and sturgeon density

We developed a movement model to examine the distribution and survival of white sturgeon (Acipenser transmontanus) in a reservoir subject to large spatial and temporal variation in dissolved oxygen and temperature. Temperature and dissolved oxygen were simulated by a CE-QUAL-W2 model of Brownlee Reservoir, Idaho for a typical wet, normal, and dry hydrologic year. We compared current water quality conditions to scenarios with reduced nutrient inputs to the reservoir. White sturgeon habitat quality was modeled as a function of temperature, dissolved oxygen and, in some cases, suitability for foraging and depth. We assigned a quality index to each cell along the bottom of the reservoir. The model simulated two aspects of daily movement. Advective movement simulated the tendency for animals to move toward areas with high habitat quality, and diffusion simulated density dependent movement away from areas with high sturgeon density in areas with non-lethal habitat conditions. Mortality resulted when sturgeon were unable to leave areas with lethal temperature or dissolved oxygen conditions. Water quality was highest in winter and early spring and lowest in mid to late summer. Limiting nutrient inputs reduced the area of Brownlee Reservoir with lethal conditions for sturgeon and raised the average habitat suitability throughout the reservoir. Without movement, simulated white sturgeon survival ranged between 45 and 89%. Allowing movement raised the predicted survival of sturgeon under all conditions to above 90% as sturgeon avoided areas with low habitat quality. ?? 2003 Elsevier B.V. All rights reserved.

Ecological Modelling↗
USGS1998

Osmoregulatory actions of the GH/IGF axis in non-salmonid teleosts

Salmonid fishes provided the first findings on the influence of the growth hormone (GH)/insulin-like growth factor I (IGF-I) axis on osmoregulation in teleost fishes. Recent studies on non-salmonid species, however, indicate that this physiological action of the GH/IGF-I axis is not restricted to salmonids or anadromous fishes. GH-producing cells in the pituitary of fish acclimated to different salinities show different degrees of activation depending on the species studied. Plasma GH levels either increase or do not change after transfer of fish from freshwater to seawater. Treatment with GH or IGF-I increases salinity tolerance and/or increases gill Na + ,K + -ATPase activity of killifish ( Fundulus heteroclitus ), tilapia ( Oreochromis mossambicus and Oreochromis niloticus ) and striped bass ( Morone saxatilis ). As in salmonids, a positive interaction between GH and cortisol for improving hypoosmoregulatory capacity has been described in tilapia ( O . mossambicus ). Research on the osmoregulatory role of the GH/IGF-I axis is derived from a small number of teleost species. The study of more species with different osmoregulary patterns will be necessary to fully clarify the osmoregulatory role of GH/IGF-I axis in fish. The available data does suggest, however, that the influence of the GH/IGF-I axis on osmoregulation may be a common feature of euryhalinity in teleosts.

Comparative Biochemistry and Physiology, Part B: B↗
USGS2002

Putting aquifers into atmospheric simulation models: An example from the Mill Creek Watershed, Northeastern Kansas

Aquifer-atmosphere interactions can be important in regions where the water table is shallow (<2 m). A shallow water table provides moisture for the soil and vegetation and thus acts as a source term for evapotranspiration to the atmosphere. A coupled aquifer-land surface-atmosphere model has been developed to study aquifer-atmosphere interactions in watersheds, on decadal timescales. A single column vertically discretized atmospheric model is linked to a distributed soil-vegetation-aquifer model. This physically based model was able to reproduce monthly and yearly trends in precipitation, stream discharge, and evapotranspiration, for a catchment in northeastern Kansas. However, the calculated soil moisture tended to drop to levels lower than were observed in drier years. The evapotranspiration varies spatially and seasonally and was highest in cells situated in topographic depressions where the water table is in the root zone. Annually, simulation results indicate that from 5-20% of groundwater supported evapotranspiration is drawn from the aquifer. The groundwater supported fraction of evapotranspiration is higher in drier years, when evapotranspiration exceeds precipitation. A long-term (40 year) simulation of extended drought conditions indicated that water table position is a function of groundwater hydrodynamics and cannot be predicted solely on the basis of topography. The response time of the aquifer to drought conditions was on the order of 200 years indicating that feedbacks between these two water reservoirs act on disparate time scales. With recent advances in the computational power of massively parallel supercomputers, it may soon become possible to incorporate physically based representations of aquifer hydrodynamics into general circulation models (GCM) land surface parameterization schemes. ?? 2002 Elsevier Science Ltd. All rights reserved.

Advances in Water Resources↗
USGS2003

Biogeochemical sulphur cycle in an extreme environment - Life beneath a high arctic glacier, Nunavut, Canada

Unique springs discharge from the surface of a high arctic glacier, releasing H2S, and depositing native sulphur, gypsum, and calcite. A rare CaCO3 polymorph, vaterite, is also observed. Physical and chemical conditions of the spring water and surrounding environment, as well as mineralogical and isotopic signatures, argue for biologically mediated redox reactions controlling sulfur. Cell counts and DNA analyses, confirm bacteria are present in the spring system. ?? 2003 Elsevier Science B.V. All rights reserved.

Conference Paper↗
USGS1996

Mobility of 2,2',5,5'-tetrachlorobiphenyl in model systems containing bottom sediments and water from the lower Fox River, Wisconsin

Sediment-water partitioning and diffusive transport of 2,2’,5,5’-tetrachlorobiphenyl, PCB congener IUPAC #52 (TCB52) were examined in laboratory experiments with sediments from two sites in the lower Fox River, Wisconsin. Native water was pumped at controlled flow rates through cells containing sediments amended with a known activity of carbon-14-labeled TCB52. Concentrations of TCB52 in water and sediments were determined by liquid scintillation measurements of carbon-14 activity. Sediment-water partitioning was independent of flow rate for rates up to 8 m/d. Distribution coefficients (K d ) and soil-sorption coefficients (K oc ) were found to be at maximum levels 5–10 cm below the surface, despite an absence of significant variation in the fraction of organic carbon (f oc ) through the same profile. Other factors, such as the effects of colloids and microbial activity in the sediments, are likely to be important in controlling the PCB distribution. Log K d and log K oc ranges were 4.1–4.9 and 5.3–6.1, respectively, and calculated effective diffusivities at the sediment-water interface ranged from 3 to 8 × 10 −10 cm 2 /s. Gradual increases with time in TCB52 concentrations in the water phase, possibly due to effects of microbial activity, were observed. Diffusion experiments and models showed that the TCB52 migration rate within the sediment column is 8-9 mm/yr.

Journal of Great Lakes Research↗
USGS1991

In vivo and in vitro transfer of trout spleen sections for early analysis of the immune response

To determine the earliest time after in vivo immunisation that the spleen could be excised and held in vitro to detect an immune response, lake trout ( Salvelinus namaycush ) were exposed to DNP-Ficoll or Yersinia ruckeri O antigen administered by intraperitoneal injection or by bath. The spleens were excised from the fish at selected times after immunisation, placed in vitro and held in tissue culture media at 14°C until 10 days after the in vivo immunisation. They then were analysed for an immune response by counting the numbers of plaqueforming cells (PFC). PFC were first detected in samples taken 3 days after injection with either antigen. With bath immunisation, however, PFC were first seen 6 days post-immunisation when using the Y. ruckeri O antigen and no PFC above background levels appeared in fish bathed in the DNP-Ficoll solution. On day 10 after immunisation, the spleens taken directly from immunised fish always produced more PFC than when the spleens were taken through in vitro culture. A unique feature of this method, is that an immune response to an antigen may be detected by excising the spleen and holding it in in vitro culture without necessarily holding the fish for long periods of time after antigen injection or bath. This technique also adds more information on how rapidly the bacterins or antigens are processed by fish to initiate an immune response.

Fish and Shellfish Pathology↗
USGS2002

Status and opportunities for genomics research with rainbow trout

The rainbow trout (Oncorhynchus mykiss) is one of the most widely studied of model fish species. Extensive basic biological information has been collected for this species, which because of their large size relative to other model fish species are particularly suitable for studies requiring ample quantities of specific cells and tissue types. Rainbow trout have been widely utilized for research in carcinogenesis, toxicology, comparative immunology, disease ecology, physiology and nutrition. They are distinctive in having evolved from a relatively recent tetraploid event, resulting in a high incidence of duplicated genes. Natural populations are available and have been well characterized for chromosomal, protein, molecular and quantitative genetic variation. Their ease of culture, and experimental and aquacultural significance has led to the development of clonal lines and the widespread application of transgenic technology to this species. Numerous microsatellites have been isolated and two relatively detailed genetic maps have been developed. Extensive sequencing of expressed sequence tags has begun and four BAC libraries have been developed. The development and analysis of additional genomic sequence data will provide distinctive opportunities to address problems in areas such as evolution of the immune system and duplicate genes. ?? 2002 Elsevier Science Inc. All rights reserved.

Conference Paper↗
USGS2022

Fires, floods and other extreme events – How watershed processes under climate change will shape our coastlines

Ongoing sea-level rise has brought renewed focus on terrestrial sediment supply to the coast because of its strong influence on whether and how long beaches, marshes and other coastal landforms may persist into the future. Here, we summarise findings of sediment discharge from several coastal rivers, revealing that infrequent, large-magnitude events have disproportionate influence on the morphodynamics of coastal landforms and littoral cells. These event-dominated effects are most pronounced for small, steep mountainous rivers that supply beach and wetland sediment along the world’s active tectonic margins, although infrequent events are important drivers of sediment discharge for rivers worldwide. Additionally, extreme events (recurrence intervals of decades to centuries) that follow wildfires, earthquakes, volcanic eruptions, extreme precipitation or – most notably – combinations of these factors can redefine coastal sediment budgets and morphology. Some of these extreme events (e.g., wildfires plus rainfall) are increasing in magnitude and frequency under modern climate warming, with the likely result of increasing sediment flux to affected coastlines. Climate change is also altering watershed processes in both high latitudes and high altitudes, resulting in increased sediment supply to downstream catchments. We conclude that sediment inputs to coastal systems are highly variable with time, and that the variability and trends in sediment input are as important to characterise as long-term averages.

Cambridge Prisms: Coastal Futures↗
USGS2023

Monitoring interdecadal coastal change along dissipative beaches via satellite imagery at regional scale

Coastal morphological changes can be assessed using shoreline position observations from space. However, satellite-derived waterline (SDW) and shoreline (SDS; SDW corrected for hydrodynamic contributions and outliers) detection methods are subject to several sources of uncertainty and inaccuracy. We extracted high-spatiotemporal-resolution (~50 m-monthly) time series of mean high water shoreline position along the Columbia River Littoral Cell (CRLC), located on the US Pacific Northwest coast, from Landsat missions (1984–2021). We examined the accuracy of the SDS time series along the mesotidal, mildly sloping, high-energy wave climate and dissipative beaches of the CRLC by validating them against 20 years of quarterly in situ beach elevation profiles. We found that the accuracy of the SDS time series heavily depends on the capability to identify and remove outliers and correct the biases stemming from tides and wave runup. However, we show that only correcting the SDW data for outliers is sufficient to accurately measure shoreline change trends along the CRLC. Ultimately, the SDS change trends show strong agreement with in situ data, facilitating the spatiotemporal analysis of coastal change and highlighting an overall accretion signal along the CRLC during the past four decades.

Oregon, Washington↗
USGS2015

Status assessment of the Endangered snow leopard Panthera uncia and other large mammals in the Kyrgyz Alay , using community knowledge corrected for imperfect detection

The Endangered snow leopard Panthera uncia occurs in the Central Asian Mountains, which cover c. 2 million km 2 . Little is known about its status in the Kyrgyz Alay Mountains, a relatively narrow stretch of habitat connecting the southern and northern global ranges of the species. In 2010 we gathered information on current and past (1990, the last year of the Soviet Union) distributions of snow leopards and five sympatric large mammals across 14,000 km 2 of the Kyrgyz Alay. We interviewed 95 key informants from local communities. Across 49 400-km 2 grid cells we obtained 1,606 and 962 records of species occurrence (site use) in 1990 and 2010, respectively. The data were analysed using the multi-season site occupancy framework to incorporate uncertainty in detection across interviewees and time periods. High probability of use by snow leopards in the past was recorded in > 70% of the Kyrgyz Alay. Between the two sampling periods 39% of sites showed a high probability of local extinction of snow leopard. We also recorded high probability of local extinction of brown bear Ursus arctos (84% of sites) and Marco Polo sheep Ovis ammon polii (47% of sites), mainly in regions used intensively by people. Data indicated a high probability of local colonization by lynx Lynx lynx in 41% of the sites. Although wildlife has declined in areas of central and eastern Alay, regions in the north-west, and the northern and southern fringes appear to retain high conservation value.

Oryx↗
USGS2013

Hanawaltite, Hg1+6Hg2+[Cl,(OH)]2O3 - A new mineral from the Clear Creek claim, San Benito County, California: Description and crystal structure

Hanawaltite, ideally Hg 1+ 6 Hg 2+ O 3 Cl 2 , is orthorhombic, Pbma (57), with unit-cell parameters refined from powder data: a =11.790(3), b =13.881(4), c =6.450(2) Å, V =1055.7(6) Å 3 , a : b : c =0.8494:1:0.4647, Z =4. The strongest six lines of the X-ray powder-diffraction pattern [ d in Å ( I )( hkl )] are: 5.25 (80)(111), 3.164 (60)(231), 3.053 (100)(041), 2.954 (70)(141), 2.681 (50)(401), and 2.411 (50)(232,341). The mineral is an extremely rare constituent in a small prospect pit near the long-abandoned Clear Creek mercury mine, New Idria district, San Benito County, California. It was found on a single-fracture surface where it is intimately associated with calomel, native mercury, cinnabar, montroydite, and quartz. Individual crystals are subhedral to anhedral, platy to somewhat bladed, and average about 50 μm in longest dimension. The largest known crystal is approximately 0.3×0.3 mm in size and is striated parallel [001]. Hanawaltite is opaque to translucent (on very thin edges), black to very dark brown–black in color, with a black to dark red–brown streak. Other physical properties include: metallic luster; cleavage {001} good; uneven fracture; brittle; nonfluorescent; H <5; calculated density (for the empirical formula) 9.51 g/cm 3 . In polished section, hanawaltite is moderately to strongly bireflectant and is pleochroic white ( R I ) to blue–white ( R 2 ). In reflected plane-polarized light, it is white with orange–red internal reflections in very thin grains and at grain margins. The anisotropy is strong with bright metallic blue rotation tints. Measured reflectance values, in air and in oil, are tabulated. Electron-microprobe analysis yielded Hg 2 O 82.46, HgO 14.27, Cl 3.33, H 2 O [0.34], sum [100.40], less O=Cl 0.75, total [99.65] wt. %, corresponding to Hg 1+ 6.00 Hg 2+ 1.00 [Cl 1.43 (OH) 0.57 ] Σ2.00 O 3.00 , based on O+Cl=5. After the crystal structure was determined, the original microprobe value for Hg 2 O, 96.2, was partitioned in a ratio of 6Hg 2 O:HgO and (OH) was calculated, such that Cl+(OH)=2. The hanawaltite structure consists of undulatory [Hg–Hg] 2+ ribbons which roughly parallel (100). The diatomic [Hg–Hg] 2+ groups have anion tails which, in turn, serve as cross linkages between dimer ribbons through [Hg 2+ O 2 Cl 2 ] planar rhombs. The structure is compared to that of other mercury oxychlorides and each is found to have its own unique structural features. This structural diversity is attributed to the inherent ability of mercury to adopt either metallic or ionic types of bonds. The mineral name honors the late Dr. J. D. (Don) Hanawalt (1903–1987), who was a pioneer in the field of X-ray powder diffraction.

California↗
USGS2011

Tsunami modelling with adaptively refined finite volume methods

Numerical modelling of transoceanic tsunami propagation, together with the detailed modelling of inundation of small-scale coastal regions, poses a number of algorithmic challenges. The depth-averaged shallow water equations can be used to reduce this to a time-dependent problem in two space dimensions, but even so it is crucial to use adaptive mesh refinement in order to efficiently handle the vast differences in spatial scales. This must be done in a 'wellbalanced' manner that accurately captures very small perturbations to the steady state of the ocean at rest. Inundation can be modelled by allowing cells to dynamically change from dry to wet, but this must also be done carefully near refinement boundaries. We discuss these issues in the context of Riemann-solver-based finite volume methods for tsunami modelling. Several examples are presented using the GeoClaw software, and sample codes are available to accompany the paper. The techniques discussed also apply to a variety of other geophysical flows. ?? 2011 Cambridge University Press.

Acta Numerica↗
USGS2017

Biological effects-based tools for monitoring impacted surface waters in the Great Lakes: a multiagency program in support of the Great Lakes Restoration Initiative

There is increasing demand for the implementation of effects-based monitoring and surveillance (EBMS) approaches in the Great Lakes Basin to complement traditional chemical monitoring. Herein, we describe an ongoing multiagency effort to develop and implement EBMS tools, particularly with regard to monitoring potentially toxic chemicals and assessing Areas of Concern (AOCs), as envisioned by the Great Lakes Restoration Initiative (GLRI). Our strategy includes use of both targeted and open-ended/discovery techniques, as appropriate to the amount of information available, to guide a priori end point and/or assay selection. Specifically, a combination of in vivo and in vitro tools is employed by using both wild and caged fish (in vivo), and a variety of receptor- and cell-based assays (in vitro). We employ a work flow that progressively emphasizes in vitro tools for long-term or high-intensity monitoring because of their greater practicality (e.g., lower cost, labor) and relying on in vivo assays for initial surveillance and verification. Our strategy takes advantage of the strengths of a diversity of tools, balancing the depth, breadth, and specificity of information they provide against their costs, transferability, and practicality. Finally, a series of illustrative scenarios is examined that align EBMS options with management goals to illustrate the adaptability and scaling of EBMS approaches and how they can be used in management decisions.

Great Lakes↗
USGS2006

A gas-phase chemiluminescence-based analyzer for waterborne arsenic

We show a practical sequential injection/zone fluidics-based analyzer that measures waterborne arsenic. The approach is capable of differentiating between inorganic As(III) and As(V). The principle is based on generating AsH 3 from the sample in a confined chamber by borohydride reduction at controlled pH, sparging the chamber to drive the AsH3 to a small reflective cell located atop a photomultiplier tube, allowing it to react with ozone generated from ambient air, and measuring the intense chemiluminescence that results. Arsine generation and removal from solution results in isolation from the sample matrix, avoiding the pitfalls encountered in some solution-based analysis techniques. The differential determination of As(III) and As(V) is based on the different pH dependence of the reducibility of these species to AsH3. At pH ???1, both As(III) and As(V) are quantitatively converted to arsine in the presence of NaBH4. At a pH of 4-5, only As(III) is converted to arsine. In the present form, the limit of detection (S/N = 3) is 0.05 ??g/L As at pH ???1 and 0.09 ??g/L As(III) at pH ???4-5 for a 3-mL sample. The analyzer is intrinsically automated and requires 4 min per determination. It is also possible to determine As(III) first at pH 4.5 and then determine the remaining As in a sequential manner; this requires 6 min. There are no significant practical interferences. A new borohydride solution formulation permits month-long reagent stability. ?? 2006 American Chemical Society.

Analytical Chemistry↗
USGS2024

3-D geological modeling for numerical flow simulation studies of gas hydrate reservoirs at the Kuparuk State 7-11-12 Pad in the Prudhoe Bay Unit on the Alaska North Slope

Accurate reservoir evaluation requires reliable three-dimensional (3-D) geological models. This study conducted 3-D geological modeling for numerical flow simulation of the B1 sand gas hydrate reservoir at the Kuparuk State 7-11-12 pad, Prudhoe Bay Unit, Alaska North Slope. The model integrates well logs, core, and seismic data to address spatial heterogeneity in geological structures and reservoir properties. Two modeling types were performed: structural framework modeling and petrophysical property modeling. For structural framework modeling, seismic data and well log markers were used to reproduce subsurface structures characterized by a normal fault system. A volume-based modeling algorithm and stair-step gridding were applied. The resulting 3-D model comprised 2,640,000 grid cells across 264 layers, including seven fault grids. For petrophysical property modeling, total porosity was initially modeled using sequential Gaussian simulation with collocated cokriging. To reproduce the upward coarsening of the B1 sand, upscaled log-derived total porosity and a 3-D trend depicting total porosity variation were used as primary and secondary data, respectively. Gas hydrate saturation distribution was modeled similarly, with secondary data from estimated porosity distribution and seismic-derived acoustic impedance map enhancing accuracy. Results indicate higher gas hydrate saturation in the upper part of the B1 sand and areas with higher acoustic impedance. Intrinsic permeability was modeled from the total porosity and clay-bound water volume, and effective permeability was derived from the gas hydrate saturation and intrinsic permeability distributions based on the “Tokyo model”. Effective permeability distributions were influenced by the total porosity, gas hydrate saturation, and intrinsic permeability. Within the same layer, higher gas hydrate saturation leads to decreased effective permeability. In total, 100 sets of multiple scenarios were prepared, providing input data for dynamic flow simulations to evaluate the effects of lateral heterogeneity in reservoir properties and the hydraulic characteristics of faults on production behavior for preassessment before the long-term production test.

Alaska↗