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At least 127 records · Page 7Linked to original sources
USGS2019

Energy depletion and stress levels of Sockeye Salmon migrating at the northern edge of their distribution

The physiological challenge for anadromous fish to migrate upriver is influenced by river temperature, but the impacts of river temperature can be difficult to predict due to an incomplete understanding of how temperature influences migration costs, especially in high‐latitude (>60°N) ecosystems. To assess temperature influences on migrating Pacific salmon Oncorhynchus spp., we measured heat shock protein 70 (HSP70), as an indicator of cellular stress, and energy content of Sockeye Salmon Oncorhynchus nerka throughout their upriver migration in the Pilgrim River, Alaska. Although HSP70 was elevated as fish moved to the spawning grounds and was higher in fish with low energy content, HSP70 did not increase with warmer river temperatures. We verified in an experiment that HSP70 abundance in Sockeye Salmon does respond to temperatures above 20.5°C. Over the 4 years of sampling, energy content decreased at similar rates as Sockeye Salmon moved upstream. We expected Sockeye Salmon energy levels would be lower when migrating in warmer river temperatures; however, we found higher energy levels occurred with higher temperatures in the Pilgrim River. We hypothesize that the relationship between temperature and energy content is due to river temperatures often occurring below optimal temperatures for migration. Lower temperatures could be energetically costly or reduce migration rates, both of which would result in lower energy content with cooler temperature. Understanding interactions between environmental drivers and physiological responses will help managers anticipate future changes for Sockeye Salmon at the northern edge of their distribution.

Alaska↗
USGS2019

Nonlethal detection of Asian fish tapeworm in the federally-endangered Humpback Chub using a molecular screening tool

Optimal spawning habitat of federally endangered Humpback Chub Gila cypha exists within the Little Colorado River; however, temperatures in the Little Colorado River are also ideal for proliferation of the invasive pathogenic Asian fish tapeworm Schyzocotyle acheilognathi . The current standard for positive identification of the parasite is necropsy and visual examination of the gut via microscopy, a methodology undesirable for assessing infection in endangered fishes. A swab taken at the rectum of the fish and analyzed using a novel DNA primer targeting the cestode cytochrome oxidase I subunit mtDNA gene region offers a convenient nonlethal sampling tool. To validate the nonlethal methodology, primer sensitivity (51.9%) and specificity (79.5%) were calculated by exposing captive fish to the parasite and comparing results using the lethal standard method (i.e., visual examination). Subsequently, we utilized this nonlethal methodology to address prevalence of infection and infection frequency across a range of size-classes in a wild population of Humpback Chub and addressed possible patterns and mechanisms of infection in the Little Colorado River. When wild Humpback Chub were screened for infection prevalence in spring 2015 (21.4%, n = 140) and fall 2015 (6.6%, n = 258), the relative frequency of infection was highest in juveniles and subadult fish (200–300 mm). Elevated levels of infection near the major spawning grounds of Humpback Chub in the Little Colorado River promote parasitic infection, which may continue to persist without treatment or actions to control infections. We demonstrated that rectal swabs, in conjunction with PCR and primer-specific identification, offer a time-efficient nonlethal method to detect infection of Asian fish tapeworm in an endangered fish.

Transactions of the American Fisheries Society↗
USGS2019

Environmental DNA assays for invasive populations of the Black Carp, Mylopharyngodon piceus, in North America

The Black Carp, Mylopharyngodon piceus, is an increasingly widespread invasive species in North America that threatens freshwater mussel populations. We developed four qPCR assays for detecting environmental DNA (eDNA) from these Black Carp populations. Assays were designed to target four mitochondrial DNA loci and were based on 34 complete mitochondrial genome sequences, including 29 generated in this study from samples obtained in three countries. Assays were validated for taxon specificity with in silico comparisons against archived DNA sequences and with in vitro tests of 41 DNA samples from Black Carp, as well as DNA samples from 30 non‐target fish species, all from the Mississippi River Basin. All four assays were able to detect the DNA of all Black Carp samples and did not exhibit any positive results with DNA from other tested species. Tests conducted in round‐robin fashion among three different laboratories found that all four assays were able to detect DNA at very low template concentrations (limits of detection = 3 copies/qPCR, limits of quantification = 16‐64 copies/qPCR) and, as part of in situ validation, were successful in detecting eDNA from Black Carp in aquaculture ponds. Despite some challenges with other attempts at in situ validation, the assays were also effective in detecting Black Carp eDNA in water samples from a drainage ditch in the upper reaches of the species’ range that was known to contain juvenile Black Carp, as well as in water samples from the Missisippi River and a connected oxbow lake in the lower reaches of the species range.

Transactions of the American Fisheries Society↗
USGS2019

New insights into the ecology of adfluvial Bull Trout and the population response to the Endangered Species Act in the North Fork Lewis River, Washington

Like many other salmonids, Bull Trout Salvelinus confluentus migratory life-history expressions are becoming increasingly rare. A critical step in effectively refining management and conservation strategies is a robust assessment of the effectiveness of such strategies and key biological information used in monitoring and recovery planning. To address this need, we integrated a variety of methods to evaluate the population demographics (abundance), vital rates (survival), and life-history characteristics (ageing, growth, spawning migrations and iteroparity) of an adfluvial Bull Trout population. We also employed our mark-recapture data to quantify if recruitment or adult survival had a greater contribution to population trends from year to year. Our results indicated Bull Trout spawning migrations vary with body size, as a considerable portion of smaller adults (<650 mm) did not spawn each year. Additionally, most spawning individuals made only one spawning migration, while <13% made three or more spawning migrations. Our abundance and survival data, which extends to the early 1990s, illustrated positive responses in survival and abundance following the protection of Bull Trout under the Endangered Species Act (1998). Over this period, we found high interannual variability in both survival and abundance, and adult survival (average = 0.45, SE = 0.04) was surprisingly lower than subadult individuals (average = 0.66, SE = 0.04), suggesting limitations at this important life stage. Our mark-recapture data also suggested the attributes driving the Bull Trout population trend (i.e., recruitment to the adult stage or adult survival) has varied through time, with declining trends in the relative contribution of recruitment. Our results provide new insights into the life-history patterns of adfluvial Bull Trout and can serve as a template to consider factors potentially limiting this and other native trout populations.

Washington↗
USGS2019

Evaluating the effects of barriers on Slimy Sculpin movement and population connectivity using novel sibship-based and traditional genetic metrics

Population genetics-based approaches can provide robust and cost-effective ways to assess the effects of potential barriers, including dams and road-stream crossings, on the passage and population connectivity of aquatic organisms. Determining the best way to apply and modify genetic tools for different species and situations is essential for making these genetics-based approaches broadly applicable to fisheries and aquatic habitat management. Here, we used multiple genetic approaches to assess the movement and population structure of Slimy Sculpin Cottus cognatus at two road-stream crossings in Michigan and one dam in Massachusetts, USA. We captured and genotyped individual sculpin and assessed movement and population connectivity by using (1) a sibship-based approach, where the presence and proportional distribution of siblings on either side of a barrier indicates population connectivity and the possible direction of movement (i.e., presumed movement from higher to lower proportions), and (2) two Bayesian genetic assignment approaches (STRUCTURE and BayesAss) to identify migrants across potential barriers based on individual population assignment probabilities. We also used traditional genetic metrics to assess within-population genetic variation and among-population genetic divergence. At all three locations, we found evidence for sculpin movement across the potential barrier based on sibship reconstruction, but small family sizes limited the ability of this approach to provide robust estimates of the rate and direction of movement. At two sites, a lack of genetic differentiation between above- and below-barrier populations limited the effectiveness of the genetic assignment methods for identifying possible migrants. At the third site, reduced upstream allelic diversity and effective number of breeders resulted in high genetic differentiation (FST) between above- and below-barrier populations, and both sibship and genetic assignment methods provided strong evidence of limited connectivity and bias against upstream movement. Overall, combining approaches and metrics may help overcome the limitations of any one method and maximize the value of datasets for genetics-based monitoring and assessment.

Massachusetts, Michigan↗
USGS2019

Effects of multiple nonnative fish on an imperiled cyprinid, Hornyhead Chub

Nonnative fish can have substantial negative effects on the abundance and distribution of native fishes through predation and competition. Nonnative predators are of particular interest because they represent novel threats to native prey species that are not adapted to their presence. Prey species with limited distributions or population sizes may be particularly vulnerable to the effects of nonnative predators. In the Laramie River, four nonnative predators—Brown Trout Salmo trutta , Rainbow Trout Oncorhynchus mykiss , Brook Trout Salvelinus fontinalis, and Smallmouth Bass Micropterus dolomieu are present along with a state‐imperiled population of Hornyhead Chub Nocomis biguttatus . The abundance of Hornyhead Chub has declined with increasing abundance of nonnative predators, with the probability of occurrence of Hornyhead Chub dropping drastically when Smallmouth Bass were present. All four nonnative species preyed on native cyprinids, but Smallmouth Bass relied most heavily on fish as a prey item. Isotopic niche overlap occurred between Hornyhead Chub and all of the nonnative predator species. Our results demonstrate that nonnative predators have the potential to negatively affect the abundance and distribution of Hornyhead Chub through the mechanisms of predation and competition, and predator identity is important in determining the extent of effects. Smallmouth Bass are a greater concern than nonnative salmonids because of their more piscivorous behavior, and their recent upstream expansion may be limiting the downstream distribution of Hornyhead Chub in the Laramie River.

Wyoming↗
USGS2019

Organic pellet decomposition induces mortality of Lake Trout embryos in Yellowstone Lake

Yellowstone Lake is the site of actions to suppress invasive Lake Trout Salvelinus namaycush and restore native Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri and natural ecosystem function. Although gill netting is effective (Lake Trout λ ≤ 0.6 from 2012 through 2018), the effort costs more than US$2 million annually and only targets Lake Trout age 2 and older. To increase suppression efficiency, we developed an alternative method using organic (soy and wheat) pellets to increase mortality of Lake Trout embryos on spawning sites. Decomposition of pellets during two in situ experiments caused dissolved oxygen (DO) concentrations to temporarily decline to lethal levels (<3.4 mg/L) within days of application. Embryo mortalities during the first exposure period (days 1–6 following application) were high at all treatment levels (1.75–28.0 kg/m 2 ) at the substrate surface and within interstices 20 cm below the surface, varying from 97 ± 1.8% (mean ± SE) to 100 ± 0.0%, but may have been enhanced by a handling effect (exposure to sunlight). Embryo mortalities during the second exposure period (days 11–22) were highest 20 cm below the surface, varying from 78 ± 9.7% to 100 ± 0.0%. Almost all (98 ± 3.1%) Lake Trout embryos died after exposure to DO < 3.4 mg/L for >200 h during the second period. Pellets caused lethal DO for several weeks below the substrate surface, despite largely dissolving and dissipating from the surface of treated areas by day 39. Broad-scale application of pellets at 1.75 kg/m 2 following the spawning period in autumn may reduce Lake Trout recruitment and enhance population suppression because the area of 14 verified spawning sites is only 11.4 ha (0.03% of lake surface area). Pellet application may be useful in other similar systems as part of an integrated pest management approach targeting multiple life stages of invasive freshwater fish.

Wyoming↗
USGS2020

RAD-seq refines previous estimates of genetic structure in Lake Erie walleye

Delineating population structure helps fishery managers to maintain a diverse “portfolio” of local spawning populations (stocks), as well as facilitate stock-specific management. In Lake Erie, commercial and recreational fisheries for Walleye Sander vitreus exploit numerous local spawning populations, which cannot be easily differentiated using traditional genetic data (e.g., microsatellites). Here, we used genomic information (12,264 polymorphic loci) generated using restriction site-associated DNA sequencing to investigate stock structure in Lake Erie Walleye. We found low genetic divergence (genetic differentiation index F ST = 0.0006–0.0019) among the four Lake Erie western basin stocks examined, which resulted in low classification accuracies for individual samples (40–60%). However, more structure existed between western and eastern Lake Erie basin stocks ( F ST = 0.0042–0.0064), resulting in greater than 95% classification accuracy of samples to a lake basin. Thus, our success in using genomics to identify stock structure varied with spatial scale. Based on our results, we offer suggestions to improve the efficacy of this new genetic tool for refining stock structure and eventually determining relative stock contributions in Lake Erie Walleye and other Great Lakes populations.

Michigan, New York, Ohio, Ontario, Pennsylvania↗
USGS2020

Niche partitioning among native ciscoes and nonnative Rainbow Smelt in Lake Superior

Several species of ciscoes Coregonus , subgenus Leucichthys that are native to the Laurentian Great Lakes are rare or extirpated. The restoration of Coregonus fishes is being actively pursued through stocking, and success may depend on the availability of unoccupied niche space. We described the spring–summer habitat occupancy and diets of three native cisco species (Bloater Coregonus hoyi , Cisco C. artedi, and Kiyi C. Kiyi ) and invasive Rainbow Smelt Osmerus mordax in Lake Superior and measured niche overlap among these species for both small and large sizes. The potential habitat area was highest for Cisco and Kiyi, followed by Bloater and Rainbow Smelt. The probability of overlap in habitat occupation, as measured by bathymetric depth, fish capture depth, distance from shore, and fish capture water temperature was highest for small Rainbow Smelt and Cisco. Trophic overlap, as measured by stomach contents and stable isotopes, was highest between small Bloater and Cisco and between large Bloater and Kiyi. All of the species showed significant ontogenetic change in both habitat occupation and diet. The overall niche overlap in spring–summer habitat and diet was greatest between small Cisco and Rainbow Smelt and between large Bloater and Kiyi; however, differences in individual niche dimensions likely limit competition for both species pairs. Synthesizing the diet and habitat niche data revealed nuanced niches that allow these seemingly similar planktivorous species to coexist. Kiyi had the least niche overlap with other cisco species and Rainbow Smelt, so from an available niche perspective Kiyi would be a strong candidate for reintroduction into lakes from which they were extirpated.

Lake Superior↗
USGS2020

Genetic family reconstruction characterizes Lake Sturgeon use of newly constructed spawning habitat and larval dispersal

Since 2004, seven spawning reefs have been constructed in the St. Clair–Detroit River system to remediate lost spawning habitat and increase recruitment of Lake Sturgeon Acipenser fulvescens . Assessment of management actions by collecting and enumerating eggs and larvae provided evidence of spawning Lake Sturgeon and survival of eggs until larval dispersal at constructed reef sites. However, the number of spawners contributing sampled offspring ( N s ), effective number of breeders ( N b ), and extent of larval dispersal was unknown. Genetic reconstruction of familial relationships assigned eggs and larvae ( n = 725) collected in 2015 and 2016 to full‐ and half‐sibling groups and estimated N s , N b , and genetic connectivity. We used a modified COLONY simulation module to simulate and convert 18 microsatellite loci (13 disomic and 5 polysomic) to 205 dominant present/absent markers to increase marker number and familial assignment accuracy in family reconstruction analysis. We assessed COLONY's ability to accurately infer familial relationships across small ( n = 50), moderate ( n = 125), and large ( n = 750) larval sample sizes using two assumed allele frequency distributions for polysomic loci. We found that with fewer offspring sampled, COLONY underestimated N s and with large sample sizes overestimated N s . However, estimates were usually within 12–16% of the simulated true N s . Across reefs, estimates of N s were 151 in 2015 and 208 in 2016, and N b was similar (158 in 2015 and 198 in 2016). Evidence of full‐ and half‐sibling larvae collected at multiple locations indicated that individual Lake Sturgeon spawned at multiple locations within years and larvae dispersed considerable distances. Estimating N s , N b , larval dispersal, and inferred genetic connectivity between locations provides managers with population demographic parameters to assess habitat remediation projects. Continued monitoring, including genetic family reconstruction, may provide insight into the long‐term effects of constructed spawning habitat on recruitment and population‐level genetic diversity.

St. Clair–Detroit River system, Lake Michigan, Lak↗
USGS2020

Gametogenesis and assessment of nonlethal tools to assign sex and reproductive condition in Burbot

Nonlethal tools (plasma sex steroid concentrations and ultrasound) for assigning sex and reproductive condition in Burbot Lota lota from Lake Roosevelt, Washington, were assessed. Gonadal tissue, blood plasma, and gonadal sonograms were collected monthly from November 2016 to March 2018. Gametogenesis was described by gonadal histology during an entire reproductive cycle to confirm sex and reproductive condition. Plasma testosterone (T) and estradiol-17β (E2) concentrations were measured by radioimmunoassay. Plasma 11-ketotestosterone (11-KT) concentrations were measured by liquid chromatography–mass spectrometry. Plasma sex steroid profiles, gonadosomatic index, and ovarian follicle diameter were also described during an entire reproductive cycle. Plasma 11-KT concentration was used to assign sex with 82% accuracy during the entire reproductive cycle, and plasma 11-KT and E2 concentrations were used to assign sex with 98% accuracy when fish were reproductive (i.e., November–March in Lake Roosevelt). Plasma T and E2 concentrations were used to assign reproductive condition in females with 98% accuracy, and plasma T concentration was used to assign reproductive condition in males with 90% accuracy. Ultrasound was used to assign sex with 96% accuracy but was not useful for assigning reproductive condition. Nonlethal tools to assign sex and reproductive condition will enable fisheries biologists to assess reproductive indices of the Burbot population in Lake Roosevelt to inform management decisions.

Washington↗
USGS2020

Mortality of endangered juvenile Lost River Suckers associated with cyanobacteria blooms in mesocosms in Upper Klamath Lake, Oregon

Unsustainably high mortality within the first 2 years of life prevents endangered Lost River Suckers Deltistes luxatus in Upper Klamath Lake, Oregon, from recruiting to spawning populations. Massive blooms of the cyanobacterium Aphanizomenon flos‐aquae and their subsequent death and decay in the lake (bloom‐crashes) are associated with high pH, low percent oxygen saturation, high total ammonia concentrations, and spikes in the cyanotoxin microcystin. Poor water quality within the lake is considered the most likely cause of juvenile sucker mortality, but mechanisms causing the high mortality are not known. We introduced PIT‐tagged age‐1 Lost River suckers into three continuously monitored mesocosms in Upper Klamath Lake to determine the timing of juvenile sucker mortality relative to pH, temperature, and dissolved oxygen. Mortality was inferred from a lack of movement detected on remote PIT tag detection equipment within each mesocosm. Mortality was compared among mesocosms and an indoor tank‐held control group. We fitted time‐varying Cox hazard models to test hypotheses about short‐term and chronic effects of single and co‐occurring water quality parameters on the daily hazard rate. Presumed healthy or moribund fish that were collected pre‐season, mid‐season, or at the end of the study were examined macroscopically and histologically to generate inferences about the causes of mortality. Models did not indicate a plausible association between water quality variables and mortality. Hypoxia preceded periods of higher mortality at two of three sites but did not co‐occur with mortality. Hatchery‐reared Lost River Suckers confined to mesocosms may not represent the behavior of wild fish, and it is unclear whether the same factors affect the mortality of wild age‐0 suckers.

Oregon↗
USGS2020

Book review: Proceedings of the First International Snakehead Symposium

Snakehead fishes (family Channidae) are among the most maligned aquatic invasive species in the USA and some other countries where they have been introduced outside of their native range in Asia and Africa. Nevertheless, snakeheads continue to be widely exploited in the live‐food trade in aquaculture and wild‐capture fisheries, are highly sought by anglers, and are also popular in the aquarium trade (Courtenay and Williams 2004). The Northern Snakehead Channa argus is the most widespread of the three channid species that are currently naturalized in the USA. This species has generated much concern and controversy, a situation that is partly fueled by sensational media coverage and B‐grade science fiction horror films, such as “Frankenfish,” “Snakehead Terror,” and “Snakehead Swamp.” Media reports of snakehead introductions are often replete with provocative terms, such as “vicious,” “villain,” “voracious,” “monster,” “diabolical,” and even “ecological Armageddon.” When snakeheads first appeared in natural waters of the USA, fisheries professionals became increasingly interested in their status. Established populations rapidly expanded in the mid‐Atlantic region and Arkansas, with scattered reports of introduced snakeheads from isolated locations in Hawaii, California, North Carolina, Florida, the Upper Midwest, and New England. In 2002, snakeheads were added to the list of injurious fishes under the Lacey Act, thereby prohibiting their importation or transport across state lines without a permit. This symposium was conceived by the editors and other concerned fisheries professionals of the Mississippi River Basin Panel on Aquatic Invasive Species. The mission of the symposium, held in Alexandria, Virginia, in July 2018, was to bring together experts on snakehead biology and ecology and to synthesize existing information into summary papers. In this book, 35 authors contributed to 15 peer‐reviewed articles that detail the current state of knowledge about snakehead introductions in the USA. Additionally, 16 abstracts are included from meeting presentations that were not accompanied by full‐length manuscripts. Also included is a summary of a facilitated symposium panel discussion featuring eight experts representing state and federal natural resource agencies and private fishing organizations. The book is organized into six sections. In the first section (Distribution), three papers provide an overview of the Channa species introduced into the USA and historical accounts of occurrence and dispersal of the Northern Snakehead in the mid‐Atlantic region and Arkansas. The second section (Biology/Ecology) consists of two articles that examine growth and energetics of Northern Snakehead populations and two papers that investigate diet, diel feeding activity, and movement of this species in the Potomac River drainage. The third section (Monitoring/Response) includes a paper that models range expansion of the Northern Snakehead in the southeastern USA based on occurrence data and environmental conditions. Also included in this section is a paper summarizing an environmental DNA study to assess the status and range of the Bullseye Snakehead C. marulius in southern Florida. The fourth section (Management/Control) is comprised of four papers that address harvest, age and growth, and development of a stock–recruitment model to inform management decisions regarding control and mitigation for Northern Snakehead populations in the greater Chesapeake Bay area. The fifth section (Perspectives) includes a paper on the history of snakehead introductions in Japan and a thought‐provoking social commentary on the human dimensions of Northern Snakehead management. Abstracts in the final section provide brief summaries of a diversity of snakehead studies, including aspects of distribution, ecology, behavior, control and monitoring efforts, public outreach, and pathology. The summary of the panel discussion is an engaging dialogue about the challenges of snakehead management in the context of conflicts regarding snakeheads as injurious versus their value as game and food species. Most of this book is focused on the Northern Snakehead. Much has been done to document snakehead distributions and certain aspects of snakehead biology, such as diets, age, and growth. Less research has been devoted to understanding the ecological impacts of snakeheads to native aquatic communities and ecosystems. This book would have benefited from a chapter summarizing the current systematics and diversity of the Channidae to inform fisheries biologists about the morphological characteristics of the family, approximate numbers of genera and species, and taxonomic instability. Exemplifying the latter, recent molecular and morphological evidence indicates uncertainty regarding identification of the feral snakehead population in Florida (Adamson and Britz 2019). Those authors suggest that this population may have originated from western Thailand, a possibility that could have implications for understanding historical pathways of snakehead introductions into the USA. In comparison with many published AFS symposia, this volume is relatively narrow in scope and lacks cohesive integration. It will primarily be of interest to those fisheries professionals engaged in the study of snakeheads as well as other nonnative species for which there are contrasting social values regarding their management: whether to monitor and attempt control or eradication efforts or to maintain populations for harvest as game or food species. The book should serve to identify information gaps and guide future research.

Transactions of the American Fisheries Society↗
USGS2020

Use of strong habitat–abundance relationships in assessing population status of cryptic fishes: An example using the Harlequin Darter

Understanding trends in abundance is important to fisheries conservation, but techniques for estimating streamwide abundance of cryptic fishes with strong habitat–abundance relationships are not well established and need further development. We developed techniques for addressing this need using the Harlequin Darter Etheostoma histrio , a small, cryptic freshwater fish associated with submerged wood in streams. Our objectives were to (1) determine how Harlequin Darter abundance and the amount of submerged wood were related at sampled sites and (2) use this relationship to estimate Harlequin Darter abundance at unsampled sites and extrapolate Harlequin Darter abundance estimates and associated uncertainty streamwide. We conducted a mark–recapture study to estimate abundance of Harlequin Darters in 25‐m stream reaches at 24 sites in Big Escambia Creek (BEC) and 18 sites in Pine Barren Creek (PBC) (Escambia River tributaries in northwestern Florida). The number of wood pieces (submerged wood ≥1.5 m long and ≥0.25 m in circumference) in both creeks was counted and mapped using side‐scan sonar and a geographic information system. Harlequin Darter and wood data were used in a Bayesian multinomial mixture model to estimate site abundance of Harlequin Darters, to determine the relationship between wood and Harlequin Darter abundance, and to extrapolate Harlequin Darter abundance streamwide. We found a positive relationship between wood and Harlequin Darter abundance in both creeks, and there were more wood pieces in PBC than in BEC. Streamwide abundance of Harlequin Darters was greater in PBC than in BEC. The extrapolated streamwide abundance estimates were 9,369 Harlequin Darters (95% credible interval = 6,668–13,402) in PBC and 7,439 Harlequin Darters (95% credible interval = 4,493–11,226) in BEC. Our methods effectively estimated abundance of a small, cryptic fish that uses complex wood habitat. In addition, our findings may assist in the conservation of the Harlequin Darter.

Florida↗
USGS2021

Juvenile Coho and Chinook salmon growth, size, and condition linked to watershed-scale salmon spawner abundance

Anadromous Pacific salmon Oncorhynchus spp. are semelparous, and resource subsidies from spawning adult salmon (marine-derived nutrients [MDN]) benefit juvenile salmonids while they rear in freshwater. However, it is unclear if juvenile salmon populations respond predictably to the abundance of spawning salmon at the watershed scale. To address whether hypothesized benefits to rearing juveniles scale up to population and watershed scales, we examined juvenile Coho Salmon Oncorhynchus kisutch and Chinook Salmon O. tshawytscha growth, fork length, condition, and abundance as a function of MDN assimilation throughout the Unalakleet and North rivers in western Alaska. Additionally, a mark–recapture experiment provided abundance estimates of Coho Salmon smolts emigrating from these two rivers. Prior to spawning, residual MDN from past years offered little advantage to juvenile salmon. However, after the arrival of spawning adults, juveniles demonstrated a positive relationship between MDN and fish size, growth, and condition in fall and winter. Out-migrating smolts also benefitted from MDN resources via increased size and growth rates. Coho Salmon smolt abundance was unrelated to total spawner biomass, but a positive relationship between MDN assimilation and smolt abundance suggested a possible effect on overwinter survival. Furthermore, similar trends in spawner biomass and the abundance of age-1 smolts suggested that age at smolting was influenced by MDN. These relationships support the hypothesis that salmon spawner abundance during Coho and Chinook Salmon rearing is an important factor in the juvenile productivity of these species.

Alaska↗
USGS2020

Defining the need for genetic stock assignment when describing stock demographics and dynamics: An example using Lake Whitefish in Lake Michigan

Genetic stock assignment is not routinely used when describing the dynamics and demographics of individual stocks supporting mixed-stock fisheries, and capture location and timing are often used as alternative assignment methods. However, variation in stock demographics and dynamics may not be accounted for if stock assignments based on capture location or timing do not accurately reflect genetic assignments. We used Lake Whitefish Coregonus clupeaformis in Lake Michigan as a model fishery to determine whether stock mixing could undermine efforts to describe stock status when using October capture location as a proxy for genetic stock assignment. Accuracy of stock assignments based on October capture location ranged from 54% to 100% among management zones. Metrics describing length and age distributions, weight at length, fecundity, and growth varied among genetic stocks. Stock-specific metrics were typically similar between stock assignment methods (capture location versus genetics) because only one or two genetic stocks were collected in most locations and the majority of those fish were from spatially proximal stocks with similar metrics. However, more extensive mixing of Lake Whitefish stocks has been documented; thus, using capture location for stock assignment could result in incorrect conclusions regarding stock status and harvest management depending on stock composition. Ambiguity in genetic stock assignments was a problem in two management zones, where between 23% and 42% of Lake Whitefish did not assign to a specific stock with a probability of at least 0.70. In the future, using genomic techniques rather than microsatellites may provide different conclusions regarding genetic stock structure; these differences could affect the accuracy of using capture location for stock assignment. Use of capture location as a proxy for genetic stock assignment may not be warranted for all mixed-stock fisheries but may be appropriate when stock mixing is limited or is restricted to stocks with consistently similar characteristics.

Michigan, Wisconsin↗
USGS2020

Genetic structure of Smallmouth Bass in the Lake Michigan and Upper Mississippi River drainages relates to habitat, distance, and drainage boundaries: Smallmouth bass population genetic structure

Analysis of genetic connectivity helps to define stock boundaries and provides information on interpopulation dynamics, such as migration and spawning site fidelity. We used 16 microsatellite loci to describe the genetic population structure of 1,215 Smallmouth Bass Micropterus dolomieu from 32 sites throughout the upper Mississippi River and Lake Michigan watersheds. We found that Smallmouth Bass populations formed two genetically distinct units separated by the Mississippi River–Lake Michigan drainage boundary. Smallmouth Bass from the Lake Michigan drainage could be parsimoniously grouped into two or six genetically distinct units that largely corresponded with either river or lake habitats, while fish from the Mississippi River drainage grouped into two, six, or nine genetic units that were mostly associated with watershed boundaries. In the Lake Michigan and Mississippi River drainages, relative migration was limited between lake and river sites, suggesting that gene flow between neighboring sites with different habitat attributes can be low. Our research provides a higher‐resolution assessment of Smallmouth Bass genetic structure in a core portion of the species’ range and provides strong evidence that Smallmouth Bass populations are structured at small spatial scales that are potentially associated with habitat type. These results demonstrate the importance of evaluating genetic structure at small spatial scales and adopting management strategies that preserve genetic diversity of black bass populations at both the watershed level and the habitat level.

Michigan, Wisconsin↗
USGS2020

A multifaceted reconstruction of the population structure and life history expressions of a remnant metapopulation of Bonneville Cutthroat Trout: Implications for maintaining intermittent connectivity

Fishes that evolutionarily demonstrated a fluvial life history expression and migrated to spawning and rearing habitat by using lotic corridors are increasingly impacted by fragmentation. The overall goal of this study was to identify the contemporary importance of main-stem connectivity and tributaries for maintaining life history expression, population structure, and viability of a large metapopulation of Bonneville Cutthroat Trout (BCT) Oncorhynchus clarkii utah persisting in the highly fragmented Weber River, Utah. We used a multifaceted approach, including active sampling, mark–recapture, passive PIT tag detection, otolith microchemistry, and genetics. We collected BCT in all tributaries and the main stem, encountering age-0 fish in three tributaries, indicating successful reproduction. In tributaries, the size structure was bimodal and consisted of smaller fish that were classified as resident and larger fish that were deemed to be fluvial, whereas all sizes and ages (age ≥ 1) were present in the main stem. We identified up to eight age-classes; tributaries were dominated by ages 2 and 8, and the main stem was dominated by ages 2, 5, 6, and 7. Tributary BCT had lower growth rates than BCT in the main stem. We observed a surprising degree of fluvial life history expression, and fish also demonstrated very complex movement patterns across their life span. Average apparent survival (33%) was within the range estimated in similar studies for BCT, and the resight rate was best explained by angler management regulations. The fact that BCT in the Weber River and tributaries still reproduce successfully in most years and are still able to grow into large, fluvial fish suggests that connectivity must be occasionally available despite considerable fragmentation. Therefore, this metapopulation may need little further human intervention if barriers to fish passage can be removed, thereby improving connectivity, and it represents a high-priority metapopulation for conservation, thus highlighting the utility of our approach.

Utah↗