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Science for the changing Great Basin

The U.S. Geological Survey (USGS), with its multidisciplinary structure and role as a federal science organization, is well suited to provide integrated science in the Great Basin of the western United States. A research strategy developed by the USGS and collaborating partners addresses critical management issues in the basin, including invasive species, status and trends of wildlife populations and communities, wildfire, global climate change, and riparian and wetland habitats. Information obtained through implementation of this strategy will be important for decision-making by natural-resource managers.

The Great Basin↗

Florida Integrated Science Center (FISC) Coral Reef Research

Coral reefs provide important ecosystem services such as shoreline protection and the support of lucrative industries including fisheries and tourism. Such ecosystem services are being compromised as reefs decline due to coral disease, climate change, overfishing, and pollution. There is a need for focused, integrated science to understand the complex ecological interactions and effects of these many stressors and to provide information that will effectively guide policies and best management practices to preserve and restore these important resources. The U.S. Geological Survey Florida Integrated Science Center (USGS-FISC) is conducting a coordinated Coral Reef Research Project beginning in 2009. Specific research topics are aimed at addressing priorities identified in the 'Strategic Science for Coral Ecosystems 2007-2011' document (U.S. Geological Survey, 2007). Planned research will include a blend of historical, monitoring, and process studies aimed at improving our understanding of the development, current status and function, and likely future changes in coral ecosystems. Topics such as habitat characterization and distribution, coral disease, and trends in biogenic calcification are major themes of understanding reef structure, ecological integrity, and responses to global change.

Fact Sheet↗

Non-native and native organisms moving into high elevation and high latitude ecosystems in an era of climate change: new challenges for ecology and conservation

Cold environments at high elevation and high latitude are often viewed as resistant to biological invasions. However, climate warming, land use change and associated increased connectivity all increase the risk of biological invasions in these environments. Here we present a summary of the key discussions of the workshop ‘Biosecurity in Mountains and Northern Ecosystems: Current Status and Future Challenges’ (Flen, Sweden, 1–3 June 2015). The aims of the workshop were to (1) increase awareness about the growing importance of species expansion—both non-native and native—at high elevation and high latitude with climate change, (2) review existing knowledge about invasion risks in these areas, and (3) encourage more research on how species will move and interact in cold environments, the consequences for biodiversity, and animal and human health and wellbeing. The diversity of potential and actual invaders reported at the workshop and the likely interactions between them create major challenges for managers of cold environments. However, since these cold environments have experienced fewer invasions when compared with many warmer, more populated environments, prevention has a real chance of success, especially if it is coupled with prioritisation schemes for targeting invaders likely to have greatest impact. Communication and co-operation between cold environment regions will facilitate rapid response, and maximise the use of limited research and management resources.

Biological Invasions↗

U.S. Geological Survey Pollinator Science Strategy, 2025–35—A Review and Look Forward

This “U.S. Geological Survey Pollinator Science Strategy, 2025–35—A Review and Look Forward” (“Pollinator Science Strategy”) describes the science vision of the U.S. Geological Survey (USGS) to support management, conservation, and policy decisions on animal pollinators and their habitats. As the science arm of the Department of the Interior, the USGS has a primary role in providing scientific information to natural resource managers and policymakers across the United States. This “Pollinator Science Strategy” was drafted by a team of USGS pollinator researchers and was further developed through feedback from Federal, State, Tribal, nongovernmental organizations, and industry partners. This “Pollinator Science Strategy” highlights the USGS’s role in the research to promote healthy pollinator populations and address partner information gaps so they can make more informed management decisions. By outlining the importance of USGS science in addressing the information needs of other agencies, organizations, and the public, the “Pollinator Science Strategy” reaffirms the USGS’s commitment to pollinator research and showcases our research priorities for 2025–35. With more than 300 research centers nationally, the USGS is equipped to address pollinator science across scales of complexity and geographic range. USGS pollinator science is organized according to the following five thematic areas: Assessing species ecology, distributions, and natural history requirements. Tracking species status and trends. Understanding species threats and stressors. Informing restoration and management actions. Developing novel methods for improving pollinator research, monitoring, and population outcomes that can benefit our Nation. Our pollinator information products and associated data are made widely available to the public to ensure scientific transparency and accessibility. This “Pollinator Science Strategy” concludes with several research goals that the USGS will work towards from 2025 to 2035, representing our vision for USGS science. These research goals include synthesizing and modernizing the latest information on pollinator threats, developing research that assists managers with habitat design and restoration, providing training to partners on native bee identification and monitoring design, and developing new technologies for assessing the status and trends of our nation’s pollinators.

Circular↗

Secretion of anti-Müllerian hormone in the Florida manatee Trichechus manatus latirostris , with implications for assessing conservation status

Environmental and anthropogenic stressors can affect wildlife populations in a number of ways. For marine mammals (e.g. the Florida manatee Trichechus manatus latirostris ), certain stressors or conservation risk factors have been identified, but sublethal effects have been very difficult to assess using traditional methods. The development of 'biomarkers' allows us to correlate effects, such as impaired reproduction, with possible causes. A recently developed biomarker (anti-Müllerian hormone, AMH) provides an enzyme-linked immunosorbent assay of gonadal function. The study objective was to determine AMH levels in wild manatees. In total, 28 male and 17 female manatee serum samples were assayed. Animal demographics included collection date, body weight (kg) and total length (cm). In certain cases, age of individuals was also known. AMH levels ranged from 160 to 2451.85 ng ml -1 (mean = 844.65 ng ml -1 ) in males and 0.00 to 0.38 ng ml -1 (mean = 0.10 ng ml-1) in females. Linear regression analyses revealed a significant relationship between male AMH levels and body weight (R 2 = 0.452; p < 0.001) and length (R 2 = 0.338; p < 0.001). Due to the small sample size, regression analyses for female AMH and body weight and length were not significant. This represents the first report of AMH detection in a marine mammal. AMH levels in male manatees are the highest of any species observed to date, whereas levels in females are within reported ranges. Further studies will promote improved conservation decision by assessing AMH levels in the manatee as a function of various stressors including, but not limited to, nutritional status, serious injuries (e.g. watercraft collisions), exposure to biotoxins or contaminants, or disease.

Florida↗

Population biology of the Florida manatee: An overview

In the following overview we discuss progress toward meeting the three objectives of the 1992 workshop: to provide a synthesis of existing information about manatee population biology; to evaluate the strengths and weaknesses of current data sets and approaches to research on manatee population biology; and to provide recommendations for research. We discuss progress in six topics that were assigned to working groups at the workshop: aerial survey and estimation of population size, reproduction, age structure, mortality, photoidentification and estimation of survival, and integration and modeling of population data. The overview includes recommendations by working group participants (*2 0'Shea et al. 1992). This workshop on manatee population biology was the most recent conference on the topic since 1978 (*BrowneIl and Rails 1981). Partly as a result of recommendations made at the 1978 workshop, several long-term population-related research projects were established. Therefore, we also measure progress in relation to knowledge available at the time of the earlier workshop. Finally, we provide a brief synopsis of pertinent new information on manatee population biology that became available between the 1992 workshop and publication of the proceedings and our conclusions about the status of the Florida manatee.

Information and Technology Report↗

Summary and synthesis of 15 years of the Amphibian Vital Sign monitoring in the National Capital Region Inventory and Monitoring Network

The amphibian monitoring program, designed and conducted by the U.S. Geological Survey’s Amphibian Research and Monitoring Initiative program, is designed to estimate the status and trends of amphibian populations to assist management decisions in individual parks and across the National Capital Region Network. Detection/non-detection data for stream and wetland habitats has been collected in 2 parks annually since 2005, and recently expanded to 11 units in the network following habitat mapping efforts. Data for all parks were incorporated into an analysis of site-occupancy for each habitat type (e.g. streams, wetlands) to estimate the occupancy rates for each species. This report summarizes the monitoring efforts, changes in the program over time, and findings based on data from 2005-2018. Fifteen species or species complexes within wetland sites and 5 species of salamander in stream sites were encountered during surveys. Across the network, more than half of wetland populations (65%) are estimated to be stable, 2% are increasing, and 33% indicate a negative trend. Stream salamander populations appear to be relatively stable, with observed population fluctuations likely related to availability of surface water in a given year. Although there were among-park differences in baseline occupancy and dynamics, overall factors promoting occupancy and persistence from year to year included sites that are large, well-connected to other breeding habitats, forested, and with low conductivity.

Report↗

Wind River subbasin restoration: Annual Report of U.S. Geological Survey activities January 2020 through December 2020

We sampled juvenile wild Steelhead Trout Oncorhynchus mykiss in headwater streams of the Wind River, WA, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over twenty years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an outdated adult ladder and contributed to increased water temperatures reducing performance of juvenile Steelhead Trout. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to Bonneville Power Administration’s (BPA) Research, Monitoring, and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (https://www.cbfish.org/ProgramStrategy.mvc/Index). Specifically, this work addresses the substrategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2020, we PIT-tagged 1,415 Steelhead parr (age-0 and age-1) in the Trout Creek and upper Wind River watersheds. Recaptures and detections of PIT-tagged Steelhead Trout parr happened through repeat headwater sampling, smolt trap operations, and instream PTISs and Columbia River PIT-tag detection infrastructure. Throughout the year, we maintained a series of six instream PTISs to monitor movement of tagged Steelhead Trout parr, smolts, and adults, providing data to population assessments, and life-cycle research and modeling. Detection data from PIT-tagged adult Steelhead Trout at PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 92 percent during eight of the past nine years and have exceeded 90% at our primary PTIS in the Wind River the past three years. Adult escapement estimates to tributary watersheds are helping evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek. The dam had potential negative effects on Steelhead Trout populations in Trout Creek due to hydrologic impairment, increased temperatures, and adult passage issues. Hemlock Dam was laddered for adult passage, but not to modern standards, which likely resulted in avoidance by some adult Steelhead Trout. We continue to improve our PTISs in the Wind River subbasin. The improvements in siting and addition of grid power to the upper Wind River PTIS (site code WRU, rkm 27.6) during 2016 and 2017, and the addition of the Mine Reach site (site code MIN, rkm 36.0) have much improved PIT-tagged fish monitoring in the upper Wind River watershed. The paired PTIS design in the upper Wind River watershed (sites WRU and MIN), matches that in the Trout Creek watershed (sites TRC and TC4) and will allow comparisons of Steelhead Trout population metrics between the two watersheds as response to Hemlock Dam removal continues and future restoration efforts occur in Trout Creek. We installed two new PTISs during 2020. Both were installed downstream of our primary interrogation sites on Trout Creek and in the mainstem Wind River. We hope the two new sites will provide interrogations information that will allow us to better estimate detection efficiencies of downstream moving juvenile Steelhead Trout at the primary interrogation sites. The additional interrogations will be particularly important for those fish tagged with 9-mm PIT tags as less information from downstream locations is available from them. These sites and other status and trend data will allow evaluation of further planned restoration within the watershed, particularly that proposed for the headwaters of Trout Creek. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. We have estimated that from 15 to 51% of parr tagged as age-0 fish in headwater areas make downstream migrations at age 1 for additional rearing during both spring and fall. We have estimated that up to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall. These findings raise questions about where parr most successfully rear and whether migrations are density or habitat quality driven. Broader monitoring programs would give a more comprehensive understanding of juvenile Steelhead Trout production and rearing and productivity contribution. Repeat sampling at consistent locations in the subbasin has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PITtagged parr during summer were similar across the subbasin but lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly relative growth for parr tagged at age-0 is similar across the subbasin. Non-native Brook Trout Salvelinus confluentus are present in the subbasin, chiefly the Trout Creek watershed, and repeat sampling has allowed us to index their prevalence. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 – 2003 to the period 2011 – 2020. Percent-of-catch and number of Brook Trout at the Trout Creek sites from 2011 through 2020 declined, though both metrics increased in 2018. Evaluation and planning of restoration efforts are critical to ensure efficient use of resources. Assessing Steelhead Trout life history variation in the Wind River subbasin will inform research and tracking of many populations and help inform habitat restoration and water allocation planning. Movement of Steelhead Trout parr from natal areas to other rearing areas raises questions regarding juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT tagging of age-0 and age-1 Steelhead Trout parr allow investigation of such questions. Increasingly detailed viable salmonid population information, such as that provided by PIT-tagging and instream PTIS networks like those in the Wind River can provide data to inform fisheries policy and management and understand life-history strategies and limiting factors. Such efforts also provide assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek, and the proposed Stage-0 restoration effort for upper Trout Creek, which would be a large-scale effort to reset sections of stream within their floodplain, restoring connectivity and interaction with surrounding landscape.

Washington↗

National Geomagnetism Program: Current Status & Five-Year Plan, 2006-2010

Executive Summary: The U.S. Geological Survey's Geomagnetism Program serves the scientific community and the broader public by collecting and distributing magnetometer data from an array of ground-based observatories and by conducting scientific analysis on those data. Preliminary, variational time-series can be collected and distributed in near-real time, while fully calibrated, absolute time-series are distributed after processing. The data are used by the civilian and military parts of the Federal Government, by private industry, and by academia, for a wide variety of purposes of both immediately practical importance and long-term scientific interest, including space-weather diagnosis and related hazard mitigation, mapping of the magnetic field and measurement of its activity, and research on the nature of the Earth's interior and the near-Earth space environment. This document reviews the current status of the Program, in terms of its situation within the Government and within the scientific community; summarizes the Program's operations, its staffing situation, and its facilities; describes the diversity of uses of Program magnetometer data; and presents a plan for the next 5 years for enhancing the Program's data-based services, developing products, and conducting scientific research.

Open-File Report↗

Black Abalone surveys at Naval Base Ventura County, San Nicolas Island, California—2021, annual report

The U.S. Geological Survey monitors a suite of intertidal black abalone sites at San Nicolas Island, California, in cooperation with the U.S. Navy, which owns the island. The nine rocky intertidal sites were established in 1980 to study the potential effect of translocated sea otters on the intertidal black abalone population at the island. The sites were monitored from 1981 to 1997, usually annually or biennially. Monitoring resumed in 2001 and has been completed annually since then. Since 2018, the work has been carried out by the U.S. Geological Survey Western Ecological Research Center. The study sites became particularly important, from a management perspective, after a virulent disease decimated black abalone populations throughout southern California beginning in the mid-1980s. The disease, withering syndrome, was first observed on San Nicolas Island in 1992 and during the next few years, it reduced the population there by more than 99 percent. The species was subsequently listed as endangered under the Endangered Species Act in 2009. The subject of this report is the 2021 survey of the sites and how the measured population status compares to the long-term data (collected over several decades) at San Nicolas Island. During the last two decades, the total monitored black abalone population at the island has grown approximately ten-fold after the disease related decline, from about 200 to more than 2,000 abalone. Since it was first consistently measured in 2005, the mean distance between adjacent black abalone has decreased substantially from approximately 50 centimeters to less than 15 centimeters, indicating that abalone are close enough together at several of the sites to reproduce successfully. The 2021 counts were the first since 2016 to indicate a possible decline in the monitored population at San Nicolas Island. Although still more than ten times the population counted in 2001, counts on the transects dropped by 13.6 percent from the survey count in 2020. The most significant decline was the loss of 341 abalone, from the previous count of 547, on a transect that since 2002 had the highest count of all 44 transects. Between 2020 and 2021, there were increases and decreases at the sites and the transects at each site. Although the 2021 count was lower than the 2020 count, it was the second highest since 1997. Based on the number of small abalone counted, recruitment rates were similar to most years since 2008 and higher than the rates observed before the population declines resulting from withering syndrome.

California↗

Wind River subbasin restoration: U.S. Geological Survey annual report November 2012 through December 2013

Executive Summary The Wind River subbasin in southwest Washington State provides habitat for a population of wild Lower Columbia River steelhead Oncorhynchus mykiss . There have been no hatchery steelhead planted in the Wind River subbasin since 1994, and hatchery adults are estimated to be less than one percent of adults in any year (pers comm. Thomas Buehrens, Washington Department of Fish and Wilflife). We used Passive Integrated Transponder (PIT)-tagging and a series of instream PIT-tag interrogation systems (PTIS) to investigate life-histories, populations, and efficacy of habitat restoration actions for these steelhead. Data from our study, and companion work by Washington Department of Fish and Wildlife (WDFW), will contribute to Bonneville Power Administration&rsquo;s (BPA) Research Monitoring and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring ( www.cbfish.org/ProgramStrategy.mvc/ViewProgramStrategySummary/1 ), specifically the sub-strategies of: 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and to uncertainties research regarding differing life histories of a wild steelhead population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer 2013, we PIT-tagged parr steelhead in headwater areas of the Wind River subbasin to investigate variable life-histories, specifically to compare fate of those juvenile steelhead that move downstream prior to smolting with those that remain in their natal areas until smolting. A series of instream PTISs monitored movement of these fish. Detections at the instream PTISs showed trends of parr emigration during summer and fall, in addition to the expected movement of parr and smolts in spring. Long-term monitoring of PIT-tagged fish over multiple years will provide information on contribution of various life-history strategies to smolt production and adult returns, as well as helping to identify factors influencing parr movement. Movements of PIT-tagged adult steelhead were tracked with our instream PTISs. These data have provided information on timing of adult movements to various parts of the watershed, which is allowing us to assess adult returns to tributary watersheds within the Wind River subbasin. Determination of adult use of tributary watersheds has provided data that will contribute to evaluating the efficacy of the removal of Hemlock Dam from Trout Creek. Hemlock Dam, located at rkm 2.0 of Trout Creek was removed in summer 2009 and had contributed to hydrologic impairment of Trout Creek. Evaluating restoration efforts is of interest to many managers and agencies so that funding and time are allocated for best results. The evaluation of various life-histories of Lower Columbia River steelhead within the Wind River subbasin will provide information to better track populations, and to direct habitat restoration and water allocation planning. Increasingly detailed Viable Salmonid Population information, such as that provided by PIT-tagging and instream PTISs networks like those we are building and operating in the Wind River subbasin, will provide data to inform policy and management, as life-history strategies and production bottlenecks are identified and understood.

Washington↗

Conservation of marine birds of northern North America: Papers from the international symposium held at the Seattle Hyatt House, Seattle, Washington, 13-15 May 1975

The international symposium "Conservation of Marine Birds of Northern North America" was convened because of a growing awareness that not all was well with our marine birds. The symposium provided a forum for scientists, governmental administrators, conservationists, and laypeople to discuss the diverse topics and issues that we must all understand if we are to act both responsively and responsibly to assure that marine birds will not be lost through our neglect. The symposium was cosponsored by the Natural Resources Council of America, National Audubon Society, National Wildlife Federation, and the U.S. Department of the Interior, Fish and Wildlife Service; additional support was provided by the Canadian Wildlife Service, the International Association of Game, Fish, and Conservation Commissioners, the Pacific Seabird Group, the Sierra Club, the Smithsonian Institution, the Wildlife Management Institute, and the Wildlife Society. Persons interested and knowledgeable in the many and varied aspects of marine bird conservation were invited to participate in this symposium. There were 139 registered and several score of unregistered participants in attendance. Major topics treated were: (1) socioeconomic considerations and conservation of marine birds; (2) the marine environment of birds; (3) status of marine bird populations on land and sea; (4) the biology and ecology of marine birds in the North; (5) conflicts between the conservation of marine birds and uses of other resources; (6) programs and authorities related to the conservation of marine birds; and (7) conservation of marine birds in other lands.

Wildlife Research Report↗

Design of Cycle 3 of the National Water-Quality Assessment Program, 2013-23: Part 2: Science plan for improved water-quality information and management

This report presents a science strategy for the third decade of the National Water-Quality Assessment (NAWQA) Program, which since 1991, has been responsible for providing nationally consistent information on the quality of the Nation's streams and groundwater; how water quality is changing over time; and the major natural and human factors that affect current water quality conditions and trends. The strategy is based on an extensive evaluation of the accomplishments of NAWQA over its first two decades, the current status of water-quality monitoring activities by USGS and its partners, and an updated analysis of stakeholder priorities. The plan is designed to address priority issues and national needs identified by NAWQA stakeholders and the National Research Council (2012) irrespective of budget constraints. This plan describes four major goals for the third decade (Cycle 3), the approaches for monitoring, modeling, and scientific studies, key partnerships required to achieve these goals, and products and outcomes that will result from planned assessment activities. The science plan for 2013–2023 is a comprehensive approach to meet stakeholder priorities for: (1) rebuilding NAWQA monitoring networks for streams, rivers, and groundwater, and (2) upgrading models used to extrapolate and forecast changes in water-quality and stream ecosystem condition in response to changing climate and land use. The Cycle 3 plan continues approaches that have been central to the Program’s long-term success, but adjusts monitoring intensities and study designs to address critical information needs and identified data gaps. Restoration of diminished monitoring networks and new directions in modeling and interpretative studies address growing and evolving public and stakeholder needs for water-quality information and improved management, particularly in the face of increasing challenges related to population growth, increasing demands for water, and changing land use and climate. However, a combination of funding growth and extensive collaboration with other USGS programs and other Federal, State, and local agencies, public interest groups, professional and trade associations, academia, and private industry will be needed to fully realize the monitoring and modeling goals laid out in this plan (USGS Fact Sheet 2013-3008).

Open-File Report↗

Wind River subbasin restoration: Annual report of U.S. Geological Survey activities January 2023 through December 2023

We sampled juvenile wild Oncorhynchus mykiss (Steelhead Trout) in headwater streams of the Wind River, WA, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over twenty years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an inadequate adult ladder and contributed to increased water temperatures. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to the Columbia Basin Fish and Wildlife Program (2008) Research, Monitoring, and Evaluation (RM&E) Strategy of Fish Population Status Monitoring. Specifically, this work addresses the sub-strategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2023, we PIT-tagged 1,294 Steelhead Trout parr (age-0 and age-1), in the Trout Creek and upper Wind River watersheds. Age-0 parr were at high abundance due to a strong spawning run in 2023 (estimate of 814 adults from September snorkel survey compared to 22-year median of 450; Charlie Cochran, WDFW Fish Biologist, personal commun., 2022), but age-1 parr abundance was low following poor spawner numbers in 2022 (estimate of 159 adults from September snorkel survey). An additional 189 age-2 or older parr were tagged to provide fish for estimating detection efficiencies at PTISs. Steelhead Trout parr were recaptured and detected through repeat headwater sampling, smolt trapping, instream PTISs and Columbia River PIT-tag detection. We maintained and upgraded six instream PTISs to detect PIT-tagged Steelhead Trout parr, smolts, and adults, providing data for population assessments, and life-cycle research. Detection data from PIT-tagged adult Steelhead Trout at PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 99 percent during seven of the past nine years and have exceeded 97% at our primary PTIS in the Wind River during eight of the past nine years. Adult escapement estimates to tributary watersheds are helping evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek, where it had potential negative effects on Steelhead Trout populations due to hydrologic impairment, increased temperatures, and adult passage issues because of an inadequate fish ladder. Detections at the instream PTISs have shown trends of age-0 and age-1 Steelhead Trout parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. Our data suggest that often most fish from a cohort that migrate downstream will do so at age-1 for additional rearing downstream of their natal areas. It is unknown if this is ingrained behavior or a result of lack of habitat capacity. We have estimated that from 15 to 56% of parr tagged as age-0 fish in headwater areas make downstream migrations at age-1 for additional rearing. We have estimated that up to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall: this is especially pronounced in the upper Wind River portion of the watershed. These findings raise questions about preferred parr rearing habitat and whether migrations are density- or habitat-quality driven, and answers to such questions are part of the long-term goals of this study as active and passive habitat restoration actions occur. Repeat sampling at sites in the subbasin within and between years has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer have been similar across the subbasin, though slightly lower in the Trout Creek watershed. Summer growth rates have been lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly relative growth was similar across the subbasin for both age-0 and age-1 tagged parr. Non-native Salvelinus fontinalis (Brook Trout) are present in the subbasin, chiefly the Trout Creek watershed, and repeat sampling provides an index of their prevalence. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 – 2003 to the period 2011 – 2024. Percent-of-catch and number of Brook Trout at the Trout Creek sites from 2011 through 2022, though variable, have generally declined. Evaluation and planning of habitat restoration efforts are critical to ensure efficient use of money and resources. Assessing Steelhead Trout life history variation in the Wind River subbasin informs research and tracking of many populations and habitat restoration and water allocation planning. Movement of Steelhead Trout parr from natal areas to other rearing areas raises questions regarding juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT-tagging of age-0 and age-1 Steelhead Trout parr allow investigation of such questions. Detailed viable salmonid population and life-history data, such as that provided by PIT-tagging and instream PTIS networks inform fisheries policy and management and enable assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek and proposed major instream habitat restoration in the upper Wind River.

Washington↗

Black abalone surveys at Naval Base Ventura County, San Nicolas Island, California—2022 annual report

The U.S. Geological Survey monitors a suite of intertidal black abalone ( Haliotis cracherodii ) sites at San Nicolas Island, California, in cooperation with the U.S. Navy, which owns the island. The nine rocky intertidal sites were established in 1980 to study the potential effect of translocated southern sea otters ( Enhydra lutris nereis ) on the intertidal black abalone population at San Nicolas Island. The sites were monitored, typically annually or biennially, from 1981 to 1997. Monitoring resumed in 2001 and has been completed annually thereafter. Since 2018, the monitoring has been carried out by the U.S. Geological Survey Western Ecological Research Center. The study sites became particularly important from a management perspective after a virulent disease decimated black abalone populations throughout southern California beginning in the mid-1980s. The disease, withering syndrome, was first observed on San Nicolas Island in 1992, and during the next few years, withering syndrome reduced the black abalone population on San Nicolas Island by more than 99 percent. The black abalone was subsequently listed as endangered under the Endangered Species Act in 2009. The subject of this report is the 2022 survey of the sites and the status of the measured population of black abalone in comparison to long-term patterns (based on data collected since 1981) at San Nicolas Island. Between the years 2000 and 2022, the total monitored black abalone population on the island has grown from roughly 200 to more than 2,000, approximately a ten-fold increase following the disease-related decline. Since it was first consistently measured in 2005, the distance between adjacent black abalone has decreased substantially from approximately 50 centimeters to less than 15 centimeters, indicating that black abalone are sufficiently close together at several of the sites to reproduce successfully. The total black abalone count in 2022 was 2,156, which was 7.9 percent lower than the total count in 2020 but 6.6 percent higher than in 2021. There were increases and decreases among the sites and transects within each site in 2022, but six of the nine sites had higher counts than in the previous year. The 2022 count is one of the highest since 1993, second only to the 2020 count. In 2022, the annual recruitment rate, defined as the percentage of measured black abalone with a shell length of 3 centimeters or less, was the second highest recorded, only slightly less than in 2017.

California↗

Wind River Subbasin Restoration Annual Report of USGS Activities January 2021 through December 2022

We sampled juvenile wild Steelhead Trout Oncorhynchus mykiss in headwater streams of the Wind River, WA, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over twenty years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an outdated adult ladder and contributed to increased water temperatures reducing performance of juvenile Steelhead Trout. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to Bonneville Power Administrations (BPA) Research, Monitoring, and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (https://www.cbfish.org/ProgramStrategy.mvc/Index). Specifically, this work addresses the sub-strategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2021 and 2022, we PIT-tagged 1,889 and 1,391 Steelhead parr (age-0 and age-1), respectively, in the Trout Creek and upper Wind River watersheds. Age-0 parr were at lower densities in 2022 than many years due to a poor return of adult Steelhead spawners in 2022. Steelhead Trout parr were recaptured and detected through repeat headwater sampling, smolt trap operations, and instream PTISs and Columbia River PIT-tag detection infrastructure. We maintained, and upgraded in 2022, a series of six instream PTISs to monitor movement of tagged Steelhead Trout parr, smolts, and adults, providing data to population assessments, and life-cycle research and modeling. We continue to improve our PTISs in the Wind River subbasin. The improvements in siting and addition of grid power to the upper Wind River PTIS (site code WRU, rkm 27.6) during 2016 and 2017, and the addition of the Mine Reach site (site code MIN, rkm 36.0) have much improved PIT-tagged fish monitoring in the upper Wind River watershed. The paired PTIS design in the upper Wind River watershed (sites WRU and MIN) matches that in the Trout Creek watershed (sites TRC, rkm 2.0; and TC4, rkm 11.5) and will allow comparisons of Steelhead Trout population metrics between the two watersheds as response to Hemlock Dam removal continues and future restoration efforts occur in Trout Creek. During summer 2022, we upgraded three PTISs with new transceivers and new or reconfigured antennas. We replaced the Biomark 1001 Multiplexing Transceivers with Biomark MTS IS1001 Master Controller and individual IS1001 Transceivers at WRU, TRC (Trout Creek, rkm 2.0), and TC4 (Trout Creek at 43 Road Bridge, rkm 11.5). These new transceivers and antennas will improve detection performance due to increased read range and decreased susceptibility to noise. We also installed an additional IS1001 Transceiver and 11-foot antenna at WRA in summer 2021 to increase cross-channel and water column coverage. Detection data from PIT-tagged adult Steelhead Trout at PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 99 percent during six of the past eight years and have exceeded 97% at our primary PTIS in the Wind River during seven of the past eight years. Adult escapement estimates to tributary watersheds are helping us evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek. The dam had potential negative effects on Steelhead Trout populations in Trout Creek due to hydrologic impairment, increased temperatures, and adult passage issues. Hemlock Dam was laddered for adult passage, but not to modern standards, which likely resulted in avoidance by some adult Steelhead Trout. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. We have estimated that from 15 to 51% of parr tagged as age-0 fish in headwater areas make downstream migrations at age 1 for additional rearing. Downstream movement occurs primarily during spring but also in fall. We have estimated that up to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall. Fall migration of age-1 parr has been more common in the upper Wind River watershed than the Trout Creek watershed. These findings raise questions about where parr most successfully rear and whether migrations are density- or habitat-quality driven. Broader monitoring programs would give a more comprehensive understanding of juvenile Steelhead Trout production and rearing and contributions to adult recruitment from varied rearing strategies. Repeat sampling at consistent locations in the subbasin has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer were similar across the subbasin, though slightly lower in the Trout Creek watershed. The greatest summer growth rate was in the mainstem of the Wind River (rkm 37 and 41). Summer growth rates were lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly relative growth was similar across the subbasin for both age-0 and age-1 tagged parr. Lower Layout Creek had the highest yearly growth rate of parr from age-0 to age-1. Mainstem Wind River (rkm 37) had the highest yearly growth rate of parr from age-1 to age-2. Non-native Brook Trout Salvelinus fontinalis are present in the subbasin, chiefly the Trout Creek watershed, and repeat sampling provides an index of their prevalence. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 2003 to the period 2011 2022. Percent-of-catch and number of Brook Trout at the Trout Creek sites from 2011 through 2022 has generally declined, though both metrics have been somewhat variable. Evaluation and planning of habitat restoration efforts are critical to ensure efficient use of money and resources. Assessing Steelhead Trout life history variation in the Wind River subbasin will inform research and tracking of many populations and help inform habitat restoration and water allocation planning. Movement of Steelhead Trout parr from natal areas to other rearing areas raises questions regarding juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT-tagging of age-0 and age-1 Steelhead Trout parr allow investigation of such questions. Increasingly detailed viable salmonid population information, such as that provided by PIT-tagging and instream PTIS networks like those in the Wind River, can provide data to inform fisheries policy and management and understand life-history strategies and limiting factors. Such efforts also enable assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek, and the proposed Stage-0 restoration effort for upper Trout Creek, which would be a large-scale effort to reset sections of stream within their floodplain, restoring connectivity and interaction with surrounding landscape.

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The AOU Conservation Committee Review of the biology, status, and management of Cape Sable Seaside Sparrows: Final report

The Cape Sable Seaside Sparrow ( Ammodramus maritimus mirabilis ) was listed as an original member of the federal list of endangered species in 1968. It is restricted to seasonally flooded prairies of extreme southern Florida and is disjunct from all other conspecific breeding populations (Kushlan et al 1982, McDonald 1988). Since the subspecies was described in 1919, its populations have been discovered and rediscovered, often only to disappear or decline to a handful of individuals (Werner and Woolfenden 1983, Kushlan and Bass 1983). Although the sparrow historically is known from six distinct areas, at present only two of these areas support populations numbering in the hundreds or low thousands of individuals. Debates swirl around the status of these remnant populations. The main controversy encompasses whether the sparrow, now largely restricted to Everglades National Park, is in jeopardy of global extinction and if so, what actions must be taken to prevent this from happening. In November 1998, a panel of scientists was assembled under the auspices of the Conservation Committee of the American Ornithologists' Union (AOU) to evaluate the scientific evidence relevant to this controversy. The Panel was charged with scrutinizing the evidence for the existence and probable causes of global population decline in this subspecies, evaluating proposed management actions, and suggesting further research necessary to manage the remaining populations to maximize their chances of long-term persistence. This document presents the conclusions of the Panel, which are based on our reading of the peer-reviewed and “gray” literature, interactions during a workshop held 9 to 11 February 1999 at Florida International University in Miami with researchers investigating the sparrow's biology, and site visits associated with the workshop. In addition, researchers provided the Panel with position papers summarizing their findings and conclusions prior to the workshop and provided information in response to specific questions following the workshop. Further information was obtained through public comment on an initial draft of this report.

The Auk↗

Status of three-dimensional geological mapping and modeling activities in the U.S. Geological Survey

The U.S. Geological Survey (USGS), created in 1879, is the national geological survey for the United States and the sole science agency within its cabinet-level bureau, the Department of the Interior. The USGS has a broad mission, including: serving the Nation by providing reliable scientific information to describe and understand the Earth; minimize loss of life and property from natural disasters; manage water, biological, energy, and mineral resources; and enhance and protect quality of life. USGS scientific activities are organized around major topics, or Mission Areas, aligned with distinct science themes; three-dimensional (3-D) modelling typically supports research and project work within a specific Mission Area. The vastness, diversity, and complexity of the geological landscape of the United States has resulted in the creation of 3-D geological framework models that are local or regional in scale; a National-scale 3-D model is only beginning to evolve. This paper summarizes 3-D geological modeling at the USGS and does not discuss 3-D modeling that is conducted by other Federal agencies, state geological surveys, academia, or industry within the U.S. This paper updates and expands upon a similar status report of USGS 3-D modeling activities of Jacobsen et al. (2011).

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