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At least 127 records · Page 7Linked to original sources
USGS1975

The toxicity of p,p'-DDT to the clapper rail

The LC50 (concentration of toxicant in the diet expected to kill half of the test birds in 5 days) for p,p' -DDT in clapper rails (Rallus longirostris) was found to be 1,612 ppm for males and 1,896 ppm for females. Amounts of DDT + DDD in the brains of birds that died were significantly greater (P < 0.01) than those in the brains of survivors. Thirty ppm DDT + DDD approximated the lower limit of these compounds in the brains of rails diagnostic of death from DDT poisoning. Residues in livers and carcasses are reported. Considering the relatively high resistance of the clapper rail to DDT poisoning, we concluded that exposure to this pesticide in marshes is not likely to be a significant factor in mortality of adult rails. Effects other than direct mortality were not evaluated in this study.

Journal of Wildlife Management↗
USGS2011

Comparative evaluation of molecular diagnostic tests for Nucleospora salmonis and prevalence in migrating juvenile salmonids from the Snake River, USA

Nucleospora salmonis is an intranuclear microsporidian that primarily infects lymphoblast cells and contributes to chronic lymphoblastosis and a leukemia-like condition in a range of salmonid species. The primary goal of this study was to evaluate the prevalence of N. salmonis in out-migrating juvenile hatchery and wild Chinook salmon Oncorhynchus tshawytscha and steelhead O. mykiss from the Snake River in the U.S. Pacific Northwest. To achieve this goal, we first addressed the following concerns about current molecular diagnostic tests for N. salmonis : (1) nonspecific amplification patterns by the published nested polymerase chain reaction (nPCR) test, (2) incomplete validation of the published quantitative PCR (qPCR) test, and (3) whether N. salmonis can be detected reliably from nonlethal samples. Here, we present an optimized nPCR protocol that eliminates nonspecific amplification. During validation of the published qPCR test, our laboratory developed a second qPCR test that targeted a different gene sequence and used different probe chemistry for comparison purposes. We simultaneously evaluated the two different qPCR tests for N. salmonis and found that both assays were highly specific, sensitive, and repeatable. The nPCR and qPCR tests had good overall concordance when DNA samples derived from both apparently healthy and clinically diseased hatchery rainbow trout were tested. Finally, we demonstrated that gill snips were a suitable tissue for nonlethal detection of N. salmonis DNA in juvenile salmonids. Monitoring of juvenile salmonid fish in the Snake River over a 3-year period revealed low prevalence of N. salmonis in hatchery and wild Chinook salmon and wild steelhead but significantly higher prevalence in hatchery-derived steelhead. Routine monitoring of N. salmonis is not performed for all hatchery steelhead populations. At present, the possible contribution of this pathogen to delayed mortality of steelhead has not been determined.

Journal of Aquatic Animal Health↗
USGS1998

Theoretical Evaluation of the Transient Response of Constant Head and Constant Flow-Rate Permeability Tests

A theoretical analysis is presented that compares the response characteristics of the constant head and the constant flowrate (flow pump) laboratory techniques for quantifying the hydraulic properties of geologic materials having permeabilities less than 10-10 m/s. Rigorous analytical solutions that describe the transient distributions of hydraulic gradient within a specimen are developed, and equations are derived for each method. Expressions simulating the inflow and outflow rates across the specimen boundaries during a constant-head permeability test are also presented. These solutions illustrate the advantages and disadvantages of each method, including insights into measurement accuracy and the validity of using Darcy's law under certain conditions. The resulting observations offer practical considerations in the selection of an appropriate laboratory test method for the reliable measurement of permeability in low-permeability geologic materials.

Geotechnical Testing Journal↗
USGS2021

Investigation of algal toxins in a multispecies seabird die-off in the Bering and Chukchi seas

Between 2014 and 2017, widespread seabird mortality events were documented annually in the Bering and Chukchi seas, concurrent with dramatic reductions of sea ice, warmer than average ocean temperatures, and rapid shifts in marine ecosystems. Among other changes in the marine environment, harmful algal blooms (HABs) that produce the neurotoxins saxitoxin (STX) and domoic acid (DA) have been identified as a growing concern in this region. Although STX and DA have been documented in Alaska (US) for decades, current projections suggest that the incidence of HABs is likely to increase with climate warming and may pose a threat to marine birds and other wildlife. In 2017, a multispecies die-off consisting of primarily Northern Fulmars ( Fulmarus glacialis ) and Short-tailed Shearwaters ( Ardenna tenuirostris ) occurred in the Bering and Chukchi seas. To evaluate whether algal toxins may have contributed to bird mortality, we tested carcasses collected from multiple locations in western and northern Alaska for STX and DA. We did not detect DA in any samples, but STX was present in 60% of all individuals tested and in 88% of Northern Fulmars. Toxin concentrations in Northern Fulmars were within the range of those reported from other STX-induced bird die-offs, suggesting that STX may have contributed to mortalities. However, direct neurotoxic action by STX could not be confirmed and starvation appeared to be the proximate cause of death among birds examined in this study.

Journal of Wildlife Diseases↗
USGS2024

Fish size structure analysis via ordination: A visualization aid

Objective Visual aids like length-frequency histograms are widely used to examine fish population status and trends; however, comparing multiple histograms simultaneously becomes cumbersome and inefficient. Complicating matters further, overlaying covariates on histograms to highlight connections with length frequencies can be challenging. An alternative, and the subject of this Perspective, is to display length distributions as an ordination using similarity indexes; in many cases, this allows for improved visual organization and representation of relationships with covariates. Methods I review the application of ordination methods for analysis of size structures using alternative visualizations that may facilitate the identification of connections that are concealed when analyzing a series of histograms. After a brief introduction to similarity indexes, types of ordinations, and sample sizes, I examine four case studies to illustrate size structure analysis via similarity indices: (1) unconstrained ordination to identify “bass-crowded” populations in a set of 34 small fishing lakes, (2) unconstrained ordination to evaluate the effect of three consecutive length limits on a Largemouth Bass Micropterus nigricans population over a span of 28 years, (3) constrained ordination to assess the relationships between fish community size structure and in-lake and off-lake environmental descriptors in 30 oxbow lakes, and (4) constrained ordination to identify what aspects of Largemouth Bass size structure were related to six types of reservoir habitats. Result Size structure analysis via similarity indexes enabled the exploration of extensive length-frequency data. It is important to acknowledge that ordinations serve solely as a visual aid for assessing size structure—no statistical testing is involved. Conclusion Ordination techniques and software are advancing at a quick pace, holding great promise for the future of size structure analysis via similarity indices.

North American Journal of Fisheries Management↗
USGS2001

Short-duration electrical immobilization of lake trout

Chemical anesthetics induce stress responses, and most leave residues in fish tissues that require a certain withdrawal time before the animal can be released into the environment. Therefore, alternatives are needed in cases when fish must be released immediately, for example, during egg-collecting operations or after implanting elastomer tags. To evaluate pulsed direct current as an alternative method of immobilization, individual lake trout Salvelinus namaycush were electrically immobilized using various pulsed-DC voltage gradients and shock durations. Duration of opercular recovery and narcosis were measured for individual fish. Fish were euthanized 24 h after electrical immobilization and processed for lateral radiograph analysis and assessment of perivertebral hemorrhaging by dissection. Survival of lake trout after electrical immobilization at 0.6 V/cm for 30 or 40 s or 0.8 V/cm for 5 or 15 s was monitored for 81 or 84 d after immobilization. Mean narcosis duration increased with voltage gradient and shock duration. Larger fish had longer periods of narcosis at the same combination of voltage gradient and shock duration. Radiological evaluation indicated that 9 of 28 fish in the oldest age-class tested had detectable injuries of the vertebral column, but all but one were in the lowest injury category. Although vertebral column injuries were observed in most small fish, the majority of vertebral column injuries were minor compressions involving two to seven vertebrae. Of the 82 lake trout electrically immobilized to assess long-term survival, only 5 died (6%). Our data suggest that lake trout could be electrically immobilized for a sufficient period to allow field workers to collect length and weight data and implant visible implant tags or colored elastomer tags. The technique we used, however, is probably not appropriate for procedures that require immobilization for more than 2–3 min.

North American Journal of Fisheries Management↗
USGS1999

Liquefaction and soil failure during 1994 Northridge earthquake

The 1994 Northridge, Calif., earthquake caused widespread permanent ground deformation on the gently sloping alluvial fan surface of the San Fernando Valley. The ground cracks and distributed deformation damaged both pipelines and surface structures. To evaluate the mechanism of soil failure, detailed subsurface investigations were conducted at four sites. Three sites are underlain by saturated sandy silts with low standard penetration test and cone penetration test values. These soils are similar to those that liquefied during the 1971 San Fernando earthquake, and are shown by widely used empirical relationships to be susceptible to liquefaction. The remaining site is underlain by saturated clay whose undrained shear strength is approximately half the value of the earthquake-induced shear stress at this location. This study demonstrates that the heterogeneous nature of alluvial fan sediments in combination with variations in the ground-water table can be responsible for complex patterns of permanent ground deformation. It may also help to explain some of the spatial variability of strong ground motion observed during the 1994 earthquake.

Journal of Geotechnical and Geoenvironmental Engin↗
USGS2014

Accounting for unsearched areas in estimating wind turbine-caused fatality

With wind energy production expanding rapidly, concerns about turbine-induced bird and bat fatality have grown and the demand for accurate estimation of fatality is increasing. Estimation typically involves counting carcasses observed below turbines and adjusting counts by estimated detection probabilities. Three primary sources of imperfect detection are 1) carcasses fall into unsearched areas, 2) carcasses are removed or destroyed before sampling, and 3) carcasses present in the searched area are missed by observers. Search plots large enough to comprise 100% of turbine-induced fatality are expensive to search and may nonetheless contain areas unsearchable because of dangerous terrain or impenetrable brush. We evaluated models relating carcass density to distance from the turbine to estimate the proportion of carcasses expected to fall in searched areas and evaluated the statistical cost of restricting searches to areas near turbines where carcass density is highest and search conditions optimal. We compared 5 estimators differing in assumptions about the relationship of carcass density to distance from the turbine. We tested them on 6 different carcass dispersion scenarios at each of 3 sites under 2 different search regimes. We found that even simple distance-based carcass-density models were more effective at reducing bias than was a 5-fold expansion of the search area. Estimators incorporating fitted rather than assumed models were least biased, even under restricted searches. Accurate estimates of fatality at wind-power facilities will allow critical comparisons of rates among turbines, sites, and regions and contribute to our understanding of the potential environmental impact of this technology.

Journal of Wildlife Management↗
USGS2015

Agonistic behavior among three stocked trout species in a novel reservoir fish community

The popularity of reservoirs to support sport fisheries has led to the stocking of species that did not co-evolve, creating novel reservoir fish communities. In Utah, the Bear Lake strain of Bonneville Cutthroat Trout Oncorhynchus clarkii utah and tiger trout (female Brown Trout Salmo trutta &times; male Brook Trout Salvelinus fontinalis ) are being more frequently added to a traditional stocking regimen consisting primarily of Rainbow Trout O. mykiss . Interactions between these three predatory species are not well understood, and studies evaluating community interactions have raised concern for an overall decrease of trout condition. To evaluate the potential for negative interactions among these species, we tested aggression in laboratory aquaria using three-species and pairwise combinations at three densities. Treatments were replicated before and after feeding. During the three-species trials Rainbow Trout initiated 24.8 times more aggressive interactions than Cutthroat Trout and 10.2 times more aggressive interactions than tiger trout, and tiger trout exhibited slightly (1.9 times) more aggressive initiations than Cutthroat Trout. There was no significant difference in behavior before versus after feeding for any species, and no indication of increased aggression at higher densities. Although Rainbow Trout in aquaria may benefit from their bold, aggressive behavior, given observations of decreased relative survival in the field, these benefits may be outweighed in reservoirs, possibly through unnecessary energy expenditure and exposure to predators.

North American Journal of Fisheries Management↗
USGS2007

A watershed approach to ecosystem monitoring in Denali National Park and preserve, Alaska

The National Park Service and the National Biological Service initiated research in Denali National Park and Preserve, a 2.4 million-hectare park in southcentral Alaska, to develop ecological monitoring protocols for national parks in the Arctic/Subarctic biogeographic area. We are focusing pilot studies on design questions, on scaling issues and regionalization, ecosystem structure and function, indicator selection and evaluation, and monitoring technologies. Rock Creek, a headwater stream near Denali headquarters, is the ecological scale for initial testing of a watershed ecosystem approach. Our conceptual model embraces principles of the hydrological cycle, hypotheses of global climate change, and biological interactions of organisms occupying intermediate, but poorly studied, positions in Alaskan food webs. The field approach includes hydrological and depositional considerations and a suite of integrated measures linking key aquatic and terrestrial biota, environmental variables, or defined ecological processes, in order to establish ecological conditions and detect, track, and understand mechanisms of environmental change. Our sampling activities include corresponding measures of physical, chemical, and biological attributes in four Rock Creek habitats believed characteristic of the greater system diversity of Denali. This paper gives examples of data sets, program integration and scaling, and research needs.

Journal of the American Water Resources Associatio↗
USGS2013

Whole-coal versus ash basis in coal geochemistry: a mathematical approach to consistent interpretations

Several standard methods require coal to be ashed prior to geochemical analysis. Researchers, however, are commonly interested in the compositional nature of the whole-coal, not its ash. Coal geochemical data for any given sample can, therefore, be reported in the ash basis on which it is analyzed or the whole-coal basis to which the ash basis data are back calculated. Basic univariate (mean, variance, distribution, etc.) and bivariate (correlation coefficients, etc.) measures of the same suite of samples can be very different depending which reporting basis the researcher uses. These differences are not real, but an artifact resulting from the compositional nature of most geochemical data. The technical term for this artifact is subcompositional incoherence. Since compositional data are forced to a constant sum, such as 100% or 1,000,000 ppm, they possess curvilinear properties which make the Euclidean principles on which most statistical tests rely inappropriate, leading to erroneous results. Applying the isometric logratio (ilr) transformation to compositional data allows them to be represented in Euclidean space and evaluated using traditional tests without fear of producing mathematically inconsistent results. When applied to coal geochemical data, the issues related to differences between the two reporting bases are resolved as demonstrated in this paper using major oxide and trace metal data from the Pennsylvanian-age Pond Creek coal of eastern Kentucky, USA. Following ilr transformation, univariate statistics, such as mean and variance, still differ between the ash basis and whole-coal basis, but in predictable and calculated manners. Further, the stability between two different components, a bivariate measure, is identical, regardless of the reporting basis. The application of ilr transformations addresses both the erroneous results of Euclidean-based measurements on compositional data as well as the inconsistencies observed on coal geochemical data reported on different bases.

International Journal of Coal Geology↗
USGS2005

Combined use of the ASK and SHK-1 cell lines to enhance the detection of infectious salmon anemia virus

Infectious salmon anemia (ISA) is a severe disease primarily affecting commercially farmed Atlantic salmon (Salmo salar) in seawater. The disease has been reported in portions of Canada, the United Kingdom, the Faroe Islands, and the United States. Infectious salmon anemia virus (ISAV), the causative agent of ISA, has also been isolated from several asymptomatic marine and salmonid fish species. Diagnostic assays for the detection of ISAV include virus isolation in cell culture, a reverse transcriptase-PCR, an enzyme-linked immunosorbent assay, and an indirect fluorescent antibody test. Virus isolation is considered the gold standard, and 5 salmonid cell lines are known to support growth of ISAV. In this study, the relative performance of the salmon head kidney 1 (SHK-1), Atlantic salmon kidney (ASK), and CHSE-214 cell lines in detecting ISAV was evaluated using samples from both experimentally and naturally infected Atlantic salmon. Interlaboratory comparisons were conducted using a quality control-quality assurance ring test. Both the ASK and SHK-1 cell lines performed well in detecting ISAV, although the SHK-1 line was more variable in its sensitivity to infection and somewhat slower in the appearance of cytopathic effect. Relative to the SHK-1 and ASK lines, the CHSE-214 cell line performed poorly. Although the ASK line appeared to represent a good alternative to the more commonly used SHK-1 line, use of a single cell line for diagnostic assays may increase the potential for false-negative results. Thus, the SHK-1 and ASK cell lines can be used in combination to provide enhanced ability to detect ISAV.

Journal of Veterinary Diagnostic Investigation↗
USGS2010

Evaluation of harmonic direction-finding systems for detecting locomotor activity

We conducted a physical simulation experiment to test the efficacy of harmonic direction finding for remotely detecting locomotor activity in animals. The ability to remotely detect movement helps to avoid disturbing natural movement behavior. Remote detection implies that the observer can sense only a change in signal bearing. In our simulated movements, small changes in bearing (<5.7??) were routinely undetectable. Detectability improved progressively with the size of the simulated animal movement. The average (??SD) of reflector tag movements correctly detected for 5 observers was 93.9 ?? 12.8% when the tag was moved ???11.5??; most observers correctly detected tag movements ???20.1??. Given our data, one can assess whether the technique will be effective for detecting movements at an observation distance appropriate for the study organism. We recommend that both habitat and behavior of the organism be taken into consideration when contemplating use of this technique for detecting locomotion.

Journal of Wildlife Management↗
USGS2019

Estimating quick-flow runoff at the monthly timescale for the conterminous United States

The quantitative estimation of the quick-flow runoff component of streamflow is required for many hydrologic applications. Estimation at the monthly timescale and national spatial scale would be particularly useful for national water availability modeling. This paper reviews a sample of commonly used equations for quick-flow runoff, including several currently in use in continental-scale models. The review shows the wide range of equation forms or heuristics currently in use to predict quick-flow runoff, the limited spatial scale over which these equations are often developed or calibrated, and the scarcity of well-tested equations available for quick-flow runoff at the monthly timescale. Data were gathered from a set of 1301 gaged watersheds across the United States to test a range of equations from the literature, along with several alternative equations, to assess and compare their performance in predicting quick-flow runoff at the monthly timescale. The highest-performing equation was selected for application to monthly maps of explanatory variables to produce monthly quick-flow runoff water budget contribution maps. This equation is a regression against precipitation, soil saturated hydraulic conductivity, surficial geology type, and slope data. Its application indicates that average quick-flow runoff across the conterminous United States in the winter exceeds that in the summer by up to a factor of three. The monthly maps were explored and evaluated for the timespan of 2000-2015. The comparison of equation forms and produced monthly maps will be useful for a variety of hydrologic modeling and monitoring applications.

Journal of Hydrology↗
USGS2003

Liquefaction potential index: Field assessment

Cone penetration test (CPT) soundings at historic liquefaction sites in California were used to evaluate the predictive capability of the liquefaction potential index (LPI), which was defined by Iwasaki et al. in 1978. LPI combines depth, thickness, and factor of safety of liquefiable material inferred from a CPT sounding into a single parameter. LPI data from the Monterey Bay region indicate that the probability of surface manifestations of liquefaction is 58 and 93%, respectively, when LPI equals or exceeds 5 and 15. LPI values also generally correlate with surface effects of liquefaction: Decreasing from a median of 12 for soundings in lateral spreads to 0 for soundings where no surface effects were reported. The index is particularly promising for probabilistic liquefaction hazard mapping where it may be a useful parameter for characterizing the liquefaction potential of geologic units.

Journal of Geotechnical and Geoenvironmental Engin↗
USGS2018

Tropical storm-induced landslide potential using combined field monitoring and numerical modeling

When heavy rainfall, such as that associated with tropical storms, falls on steep hillsides, shallow landslides are often one of the damaging consequences. To assess landslide potential from heavy rainfall, a strategy of combined numerical simulation and field monitoring of variably saturated hillslope conditions is developed. To test the combined method, hillslope hydrologic data from paired field monitoring sites in western North Carolina are examined. The hydrologic data collected from the field monitoring site where no shallow landslide has occurred is used to identify and calibrate the hydromechanical parameters used in a numerical ground water flow model. The identified parameters are then used to simulate landslide potential at the two hillslopes during heavy rainfall associated with hurricanes Frances and Ivan (HFI) that impacted western North Carolina in 2004. Results identify the timing of instability at the shallow landslide site and show that the stable site remains stable during rainfall associated with the HFI tropical storms. Thus, the results demonstrate the effectiveness of combined numerical modeling and field monitoring to evaluate landslide potential under variably saturated conditions.

North Carolina↗
USGS2025

Non-lethal detection of Renibacterium salmoninarum in Greenback Cutthroat Trout Oncorhynchus clarkii stomias comparing mucus, blood, and ovarian fluid samples to kidney tissues

Objective Renibacterium salmoninarum , the causative agent of bacterial kidney disease, poses a major threat to both wild and aquaculture salmonid populations. Traditional detection methods typically involve lethal sampling to collect kidney tissues but are often impractical for species of conservation concern. This study evaluates nonlethal sampling techniques for detecting R. salmoninarum in Greenback Cutthroat Trout Oncorhynchus clarkii stomias by comparing mucus, blood, and ovarian fluid samples to conventional kidney tissue. Methods During the 2019 spawning season, we collected samples from 781 adult fish and tested for R. salmoninarum via direct fluorescent antibody test (DFAT) and quantitative polymerase chain reaction (qPCR). Results A total of 25 and 256 kidney tissues were positive by DFAT and qPCR, respectively. Of the three nonlethal samples tested, mucus swabs showed the highest percent correlation for detection with positive kidney tissues (DFAT = 47.6%, qPCR = 41.7%). Blood and ovarian fluid samples showed a lower percent correlation with positive kidney tissues (blood: DFAT = 12.0%, qPCR = 1.2%; ovarian fluid: DFAT = 12.5%, qPCR = 21.4%). Conclusions Our results suggest that nonlethal mucus swabbing could serve as a practical alternative for monitoring R. salmoninarum, especially in conservation efforts where minimizing fish mortality is critical.

Colorado↗
USGS2020

Assessing establishment and growth of agricultural plantings on reservoir mudflats

Winter drawdowns in flood control reservoirs create expansive mudflats that lack the vegetation typical of littoral zones, which reduces the amount of structure available for fish habitat. This study investigated the feasibility of establishing agricultural plantings as a management action to ameliorate mudflats by providing structural cover following reservoir refilling. We tested cool-season annual grasses and clovers applied in several mixed and monoculture treatments that were sown on the mudflats of Enid Reservoir, Mississippi, during the winter drawdown in three consecutive years. Soil samples were taken for analysis of pH and macronutrients prior to planting. Plantings were monitored until the following spring to evaluate effectiveness of establishment through ground coverage, height, and stem density sampling. Plots were assigned a seeding treatment of either grasses (ryegrass Lolium spp. or triticale x Triticosecale sp.), clovers (balansa clover Trifolium michelianum or berseem clover Trifolium alexandrinum ), or both (mixed plantings) or left as an unseeded control. Differences among plant treatments were assessed via repeated measures analysis of variance and differences among means evaluated with Tukey's honestly significant difference test. Soil productivity within the study area was poor all 3 years. Grasses germinated both when disked into the soil and when top sown, while clover only germinated when disked. Plots seeded with grasses performed better than control plots with respect to stem density, height, and ground coverage, while plots seeded with grass and clover mixtures performed better than control plots only with respect to height, and plots seeded with only clover did not perform significantly better than control plots. Results serve as an evaluation of the efficacy of agricultural plant establishment on the mudflats of a flood control reservoir, inform the direction of future research, and identify considerations regarding the application of agricultural plantings as a management tool to create fish habitat.

Mississippi↗