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Interrogating process deficiencies in large-scale hydrologic models with interpretable machine learning

Large-scale hydrologic models are increasingly being developed for operational use in the forecasting and planning of water resources. However, the predictive strength of such models depends on how well they resolve various functions of catchment hydrology, which are influenced by gradients in climate, topography, soils, and land use. Most assessments of hydrologic model uncertainty have been limited to traditional statistical methods. Here, we present a proof-of-concept approach that uses interpretable machine learning techniques to provide post hoc assessment of model sensitivity and process deficiency in hydrologic models. We train a random forest model to predict the Kling–Gupta efficiency (KGE) of National Water Model (NWM) and National Hydrologic Model (NHM) streamflow predictions for 4383 stream gauges in the conterminous United States. Thereafter, we explain the local and global controls that 48 catchment attributes exert on KGE prediction using interpretable Shapley values. Overall, we find that soil water content is the most impactful feature controlling successful model performance, suggesting that soil water storage is difficult for hydrologic models to resolve, particularly for arid locations. We identify nonlinear thresholds beyond which predictive performance decreases for NWM and NHM. For example, soil water content less than 210 mm, precipitation less than 900 mm yr −1 , road density greater than 5 km km −2 , and lake area percent greater than 10 % contributed to lower KGE values. These results suggest that improvements in how these influential processes are represented could result in the largest increases in NWM and NHM predictive performance. This study demonstrates the utility of interrogating process-based models using data-driven techniques, which has broad applicability and potential for improving the next generation of large-scale hydrologic models.

conterminous United States

Environmental Contaminants in Wildlife: Interpreting Tissue Concentrations

Covers the complex issue of how to evaluate contaminants in wildlife. This comprehensive resource deals with the question: 'How much of a chemical in the tissues of an animal is harmful?' Features: Authoritative and sound advice is provided on many environmental contaminants, including what the contaminants are and how to interpret the data on them. Each chapter includes a review of the literature on a specific chemical, followed by a clear technical summary that provides research guidance. Direction is given on how to interpret data that are sometimes conflicting or insufficient. Data are presented in easy to use tables. Primary attention is given to toxic concentrations of contaminants such as organochlorine pesticides, PCBs, dioxins, PAHs, metals, and fluorides.

SETAC Special Publications Series.

Interpreting residues of petroleum hydrocarbons in wildlife tissues

A brief guidance publication that explains how to evaluate reports of petroleum concentrations in animal tissue. Sections on background, sampling and handling of samples, reports and interpretation, when to analyze for hydrocarbons, and how to interpret the magnitude of the concentrations.

Biological Report

Geological interpretation of a Gemini photo

Study of the Gemini V photograph of the Salt Range and Potwar Plateau, West Pakistan, indicates that small-scale orbital photographs permit recognition of the regional continuity of some geologic features, particularly faults and folds that could he easily overlooked on conventional air photographs of larger scale. Some stratigraphic relationships can also be recognized on the orbital photograph, but with only minimal previous geologic knowledge of the area, these interpretations are less conclusive or reliable than the interpretation of structure. It is suggested that improved atmospheric penetration could be achieved through the use of color infrared film. Photographic expression of topography could also be improved by deliberately photographing some areas during periods of low sun angle.

Potwar Plateau;Salt Rrange

Interpretation of long- and short-wavelength magnetic anomalies

Magset was launched on October 30, 1979. More than a decade of examining existing data, devising appropriate models of the global magnetic field, and extending methods for interpreting long-wavelength magnetic anomalies preceded this launch Magnetic data collected by satellite can be interrupted by using a method of analysis that quantitively describes the magnetic field resulting from three-dimensional geologic structures that are bounded by an arbitrary number of polygonal faces, Each face my have any orientation and three or more sides. At each point of the external field, the component normal to each face is obtained by using an expression for the solid angle subtended by a generalized polygon. The "cross" of tangential components are relatively easy to obtain for the same polygons. No approximations have been made related to orbit height that restrict the dimensions of the polygons relative to the distance from the external field points. This permits the method to be used to model shorter wavelength anomalies obtained from aircraft or ground surveys. The magnetic fields for all the structures considered are determine in the same rectangular coordinate system. The coordinate system is in depended from the orientation of geologic trends and permits multiple structures or bodies to be included in the same magnetic field calculations. This single reference system also simplified adjustments in position and direction to account for earth curvature in regional interpretation.

Sixth Annual Pecora Symposium and Exposition

BIA interpretation techniques for vegetation mapping using thematic mapper false color composites (interim report for San Carlos Reservation)

The Bureau of Indian Affairs (BIA) is responsible for the natural resource management of approximately 52 million acres of Trust lands in the contiguous United States. The lands are distributed in a "patchwork" fashion throughout the country. Management responsibilities on these areas include: minerals, range, timber, fish and wildlife, agricultural, cultural, and archaeological resources. In an age of decreasing natural resources and increasing natural resource values, effective multiple resource management is critical. BIA has adopted a "systems approach" to natural resource management which utilizes Geographic Information System (GIS) technology. The GIS encompasses a continuum of spatial and relational data elements, and included functional capabilities such as: data collection, data entry, data base development, data analysis, data base management, display, and report generalization. In support of database development activities, BIA and BLM/TGS conducted a cooperative effort to investigate the potential of 1:100,000 scale Thematic Mapper (TM) False Color Composites (FCCs) for providing vegetation information suitable for input to the GIS and to later be incorporated as a generalized Bureau wide land cover map. Land cover information is critical as the majority of reservations currently have no land cover information in either map or digital form. This poster outlines an approach which includes the manual interpretation of land cover using TM FCCs, the digitizing of interpreted polygons, and the editing of digital data, used upon ground truthing exercises. An efficient and cost-effective methodology for generating large area land cover information is illustrated for the Mineral Strip area on the San Carlos Indian Reservation in Arizona. Techniques which capitalize on the knowledge of the local natural resources professionals, while minimizing machine processing requirements, are suggested.

Arizona

Multi-temporal mapping of a large, slow-moving earth flow for kinematic interpretation

Periodic movement of large, thick landslides on discrete basal surfaces produces modifications of the topographic surface, creates faults and folds, and influences the locations of springs, ponds, and streams (Baum, et al., 1993; Coe et al., 2009). The geometry of the basal-slip surface, which can be controlled by geological structures (e.g., fold axes, faults, etc.; Revellino et al., 2010; Grelle et al., 2011), and spatial variation in the rate of displacement, are responsible for differential deformation and kinematic segmentation of the landslide body. Thus, large landslides are often composed of several distinct kinematic elements. Each element represents a discrete kinematic domain within the main landslide that is broadly characterized by stretching (extension) of the upper part of the landslide and shortening (compression) near the landslide toe (Baum and Fleming, 1991; Guerriero et al., in review). On the basis of this knowledge, we used photo interpretive and GPS field mapping methods to map structures on the surface of the Montaguto earth flow in the Apennine Mountains of southern Italy at a scale of 1:6,000. (Guerriero et al., 2013a; Fig.1). The earth flow has been periodically active since at least 1954. The most extensive and destructive period of activity began on April 26, 2006, when an estimated 6 million m3 of material mobilized, covering and closing Italian National Road SS90, and damaging residential structures (Guerriero et al., 2013b). Our maps show the distribution and evolution of normal faults, thrust faults, strike-slip faults, flank ridges, and hydrological features at nine different dates (October, 1954; June, 1976; June, 1991; June, 2003; June, 2005; May, 2006; October, 2007; July, 2009; and March , 2010) between 1954 and 2010. Within the earth flow we recognized several kinematic elements and associated structures (Fig.2a). Within each kinematic element (e.g. the earth flow neck; Fig.2b), the flow velocity was highest in the middle, and lowest in the upper and lower parts. As the velocity of movement initiated and increased, stretching of the earth flow body induced the formation of normal faults. Conversely, decreasing velocity and shortening of the earth flow induced the formation of thrust faults. A zone with relatively few structures, bounded by strike-slip faults, was located between stretching and shortening areas. These kinematic elements indicate that the overall earth flow was actually composed of numerous linked internal earth flows, with each internal flow having a distinct pattern of structures representative of stretching and shortening (Guerriero et al., in review). These observations indicated that the spatial variation in movement velocity associated with each internal earth flow, mimicked the pattern of movement for the overall earth flow. That is, the earth flow displayed a self-similar pattern at different scales. Furthermore, the presence of other structures such as back-tilted surfaces, flank-ridges, and hydrological elements provide specific information about the shape of the basal topographic surface. Our multi-temporal maps provided a basis for interpretation of the long-term kinematic evolution of the earth flow and the influence of the basal-slip surface on the earth flow movement. Our maps showed that main faults remained stationary through time, despite extensive mobilization and movement of material. This observation indicated that the slip-surface has remained relatively stationary since at least 1954.

Conference Paper

Population genetic studies of the polar bear ( Ursus maritimus ): A summary of available data and interpretation of results

A summary of existing population genetics literature is presented for polar bears ( Ursus maritimus ) and interpreted in the context of the species' life-history characteristics and regional heterogeneity in environmental regimes and movement patterns. Several nongenetic data sets including morphology, contaminant levels, geographic variation in reproductive characteristics, and the location and distribution of open-water foraging habitat suggest some degree of spatial structuring. Eleven populations are recognized by the IUCN Polar Bear Specialist Group. Few genetics studies exist for polar bears. Interpretation and generalizations of regional variation in intra- and interpopulation levels of genetic variability are confounded by the paucity of data from many regions and by the fact that no single informative genetic marker has been employed in multiple regions. Early allozyme studies revealed comparatively low levels of genetic variability and no compelling evidence of spatial structuring. Studies employing mitochondrial DNA (mtDNA) also found low levels of genetic variation, a lack of phylogenetic structure, and no significant evidence for spatial variation in haplotype frequency. In contrast, microsatellite variable number of tandem repeat (VNTR) loci have revealed significant heterogeneity in allele frequency among populations in the Canadian Arctic. These regions are characterized by archipelgic patterns of sea-ice movements. Further studies using highly polymorphic loci are needed in regions characterized by greater polar bear dependency on pelagic sea-ice movements and in regions for which no data currently exist (i.e., Laptev and Novaya Zemlya/Franz Josef).

Book chapter

Revisiting geophysical interpretations of the Midcontinent Rift below Lake Superior— Insights from GLIMPCE seismic-reflection line C

The 1.1 Ga Midcontinent Rift System (MRS) has been investigated in the Lake Superior region for more than a century. The most influential geophysical data for modern paradigms has come from seismic-reflection profiles collected by the Great Lakes International Multidisciplinary Program on Crustal Evolution (GLIMPCE) in the late 1980s. We are revisiting seismic-reflection GLIMPCE line C by constructing a detailed velocity model for conversion of the seismic data measured in two-way travel time to a section plotted versus depth. Preliminary results from the velocity modeling, depth conversion, and ties to onshore geology have led to a significantly different view of Line C as primarily a sag basin rather than a half-graben. Narrow intervals of high-velocity material that emanate upwards along both sides of the sag basin are interpreted as mafic intrusions connected to the mantle. This new interpretation suggests that basin subsidence was the dominant process in the development of rift stage troughs rather than major half-graben structures.

Conference Paper

Interpreting a sudden population decline in a long-lived species (Malaclemys terrapin rhizophorarum)

Long-term ecological studies are critical for providing insight into population dynamics and detecting population declines, particularly for species of conservation concern. However, spatiotemporal variation and logistical challenges make the identification of sudden population declines difficult. We conducted an in-water capture-mark-recapture study of mangrove diamond-backed terrapins ( Malaclemys terrapin rhizophorarum ) within Big Sable Creek, in Everglades National Park, Florida. We used an 18-year dataset (2001 to 2019) incorporating year, sex, hurricane occurrence, and sampling effort to estimate survival using Cormack–Jolly–Seber (CJS) models in Program Mark. Annual survivorship estimates were high from 2001 to 2003 for both sexes (91%–96%) and variable from 2006 to 2014 (77%–92%). Beginning in 2015, survival estimates exhibited a steeper decline (females: 65%, males 75%), and dropped to below 36% by 2018. Because the driver of this apparent population decline is unknown, we created a population projection matrix and used model-estimated annual survival to simulate annual terrapin population size. We then generated competing scenarios of low survival at various age classes to attempt to reproduce a simulated decline mirroring what we observed from our capture data. A scenario of low adult survival (75%–85%) from 2012 to 2018, possibly in conjunction with no reproduction after 2010, provides estimates of abundance that appear to match simulated annual population size and may indicate that adult emigration/human removal or a drastic drop in recruitment could be responsible for the apparent decline in survival. We explore reasons for this apparent decline and highlight difficulties common to long-term studies that may influence how declines are interpreted.

Florida

Greater sage-grouse seasonal habitat associations: A review and considerations for interpretation and management applications

Habitat features needed by wildlife can change in composition throughout the year, particularly in temperate ecosystems, leading to distinct seasonal spatial-use patterns. Studies of species-habitat associations therefore often focus on understanding relationships within discrete seasonal periods with common goals of prediction (e.g., habitat mapping) and inference (e.g., interpreting model coefficients). Across the range of the greater sage-grouse ( Centrocercus urophasianus ) of western North America, the increasing use of high-frequency tracking devices has led to a surge in habitat association studies covering multiple temporal periods and spatial extents. We reviewed the literature for seasonal habitat association studies corresponding to the second and third orders of selection (Johnson 1980). Our objectives were to summarize the methodological approaches used to estimate habitat associations to aid understanding in cross-study comparisons and identify common habitat features reported as selected or avoided within different seasonal periods. We reviewed 71 second- and third-order studies published from 2007–2023 that evaluated covariates collected in a geographic information system (GIS) and modeled probability of selection or intensity of use. The most common study design evaluated a single level of selection (third-order) and was multi-scale (i.e., covariates were measured at varying spatial grains). The most common model approach estimated habitat associations using resource selection functions (RSFs) fit with logistic regression. Studies mostly focused on the breeding periods and winter, but all seasons throughout the annual cycle were covered. There was clear support for selection of sagebrush and avoidance of trees and rugged terrain across seasons, and strong selection of mesic conditions in summer. However, habitat associations for most covariates were mixed, with proportionally equivalent selection and avoidance reported, even within the same seasons. Different factors hampered cross-study comparisons, including variation in study design, but additional contributors likely included important context-dependent habitat associations, such as functional responses to changing habitat availability. We suggest collaborative studies leveraging multiple datasets can help improve seasonal habitat inference by removing the effects of variable study designs.

Journal of Wildlife Management

Model-based interpretation of sediment concentration and vertical flux measurements in a shallow estuarine environment

A one-dimensional numerical model describing tidally varying vertical mixing and settling was used to interpret sediment concentrations and vertical fluxes observed in the shoals of South San Francisco Bay by two acoustic Doppler velocimeters (ADVs) at elevations of 0.36 m and 0.72 m above bed. Measured sediment concentrations changed by up to 100 g m &minus;3 over the semidiurnal tidal cycle. These dynamics were dominated by local resuspension and settling. Multiple particle class models suggested the existence of a class with fast settling velocities ( w s of 9.0 &times; 10 &minus;4 m s &minus;1 in spring and 5.8 &times; 10 &minus;4 m s &minus;1 in fall) and a slowly settling particle fraction ( w s of <1 &times; 10 &minus;7 m s &minus;1 in spring and 1.4 &times; 10 &minus;5 m s &minus;1 in fall). Modeled concentrations of slowly settling particles at 0.36 m were as high as 20 g m &minus;3 during fall and varied with the spring-neap cycle while fine sediment concentrations in spring were constant around 5 g m &minus;3 . Analysis of in situ water column floc size distributions suggested that floc properties in the lower part of the water column were most likely governed by particle-size distribution on the bed and not by coagulation, validating our multiple particle size approach. A comparison of different sediment bed models with respect to model performance, sensitivity, and identifiability suggested that the use of a sediment erosion model linear in bottom shear stress &tau; b ( E = M ( &tau; b &minus; &tau; c )) was the most appropriate choice to describe the field observations when the critical shear stress &tau; c and the proportionality factor M were kept constant.

California

Using occupancy models to accommodate uncertainty in the interpretation of aerial photograph data: status of beaver in Central Oregon, USA

Beavers ( Castor canadensis ) influence habitat for many species and pose challenges in developed landscapes. They are increasingly viewed as a cost-efficient means of riparian habitat restoration and water storage. Still, information on their status is rare, particularly in western North America. We used aerial photography to evaluate changes in beaver occupancy between 1942&ndash;1968 and 2009 in upper portions of 2 large watersheds in Oregon, USA. We used multiple observers and occupancy modeling to account for bias related to photo quality, observers, and imperfect detection of beaver impoundments. Our analysis suggested a slightly higher rate of beaver occupancy in the upper Deschutes than the upper Klamath basin. We found weak evidence for beaver increases in the west and declines in eastern parts of the study area. Our study presents a method for dealing with observer variation in photo interpretation and provides the first assessment of the extent of beaver influence in 2 basins with major water-use challenges. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

Oregon

A climatic-limnologic model of diatom succession for paleolimnological interpretation of varved sediments at Elk Lake, Minnesota

Sediment traps placed in the profundal region of Elk Lake, north central Minnesota during the 1979 spring and 1983-84 fall and spring seasons monitored seasonal diatom production for two climatically distinctive periods. The spring of 1979 was one of the coldest and wettest on record. Ice out at Elk Lake was 10 days later than average, and spring circulation was short. Fragilaria crotonensis dominated the late spring and early summer diatom production in association with Synedra and Cyclotella species, perhaps because rates of phosphorus supply were low compared to silica. The winter of 1983-84 was drier than usual, and the early but cold spring of 1984 caused ice out at Elk Lake to be about 1 week earlier than normal. Spring storms promoted a long and full circulation that allowed Stephanodiscus minulutus to bloom, presumably in response to increased phosphorus loading related to deep and vigorous circulation. The two dominant diatoms in Elk Lake, F. crotonensis and S. minutulus may reflect climatic patterns that control lake circulation. The climatically regulated occurrence of these diatoms is generally, but not specifically, comparable to their distribution in lake surface sediments throughout Minnesota. A combination of regional and lake-specific studies on the controls of diatom succession and distribution provides climatic insights for interpreting paleolimnogical records of diatoms. ?? 1988 Kluwer Academic Publishers.

Journal of Paleolimnology

Formation of regolith-collapse sinkholes in southern Illinois: Interpretation and identification of associated buried cavities

Three regolith-collapse sinkholes formed near the Dongola Unit School and the Pentecostal Church in the southern Illinois village of Dongola (Union County) during the spring of 1993. The sinkholes appeared over a three-month period that coincided with development of a new municipal well. The new well was drilled through clay-rich, valley-fill sediment into karstified limestone bedrock. The piezometric surface of the limestone aquifer is above land surface, indicating the presence of an upward hydraulic gradient in the valley and that the valley fill is acting as a confining unit. Pumping during development of the well lowered the piezometric surface of the limestone aquifer to an elevation below the base of the valley fill. It is hypothesized that drainage of water from the sediments, the resulting loss of hydrostatic pressure and buoyant force in overlying sediments, increased intergranular pressure, and the initiation of groundwater flow toward the well resulted in rapid sediment transport, subsurface erosion, and collapse of the valley-fill sediment. The sinkholes follow an approximately east-west alignment, which is consistent with one of the two dominant alignments of passages of nearby joint-controlled caves. A constant electrode-separation resistivity survey of the school playground was conducted to locate areas that might contain incipient sinkholes. The survey revealed a positive resistivity anomaly trending N75E in the southern part of the study area. The anomaly is linear, between 5 and 10 m wide, and its trend either intersects or is immediately adjacent to the three sinkholes. The anomaly is interpreted to be a series of pumping-induced cavities in the valley-fill sediments that formed over a preexisting crevice in the karstified bedrock limestone. ?? 1994 Springer-Verlag.

Environmental Geology

Presentation and interpretation of chemical data for igneous rocks

Arguments are made in favor of using variation diagrams to plot analyses of igneous rocks and their derivatives and modeling differentiation processes by least-squares mixing procedures. These methods permit study of magmatic differentiation and related processes in terms of all of the chemical data available. Data are presented as they are reported by the chemist and specific processes may be modeled and either quantitatively described or rejected as inappropriate or too simple. Examples are given of the differing interpretations that can arise when data are plotted on an AEM ternary vs. the same data on a full set of MgO variation diagrams. Mixing procedures are illustrated with reference to basaltic lavas from the Columbia Plateau.

Idaho, Washington, Oregon

Geological interpretation of combined Seabeam, Gloria and seismic data from Anegada Passage (Virgin Islands, north Caribbean)

The Anegada Passage (sensu lato) includes several basins and ridges from Southeast of Puerto Rico to the corner of the Virgin Islands Platform. Seabeam (Seacarib I) and Gloria long-range sidescan sonar surveys were carried out in this area. These new data allow us to propose an interpretation of the Anegada Passage. Most of the features described are related to wrench faulting: (a) St Croix and Virgin Islands Basins are pull-apart basins created in a right-lateral strike-slip environment based on their rhomboidal shape and seismic data (e.g. the flower structure). These two pull-aparts are divided into two sub-basins by a curvilinear normal fault in the Virgin Islands Basin and a right-lateral strike-slip fault in the St Croix Basin. (b) Tortola Ridge and a 'dog's leg' shaped structure are inferred to be restraining bends between two right-lateral strike-slip faults. (c) We identified two ENE-WSW volcanic lineaments in the eastern area and one volcano lying between Virgin Islands and St Croix Basins. (d) As shown by the seismic activity main wrench motion occurs along the north slope of Virgin Islands Basin and through Anegada Passage. A branching of this main fault transmits the transtensional motion to St Croix Basin. A two-stage story is proposed for the creation of the basins. A first extensional event during Eocene(?)-Oligocene-lower Miocene time created Virgin Islands, St Croix Basins and the tilted blocks of St Croix Ridge. A second transtensional event from Pliocene to Recent gave the present day pattern to this area. However, the displacement along the strike-slip faults is no more than 15 km long. The proposed geodynamic model is based on the separation of the northeastern Caribbean boundary into two blocks. In the West, the indenter of Beata Ridge gives a northeastern motion to Hispaniola Block. In the East, as a result of Hispaniola Block's motion, the Puerto Rico-Virgin Islands Block could escape in an east-northeast direction.

Anegada Passage

Combined interpretation of radar, hydraulic, and tracer data from a fractured-rock aquifer near Mirror Lake, New Hampshire, USA

An integrated interpretation of field experimental cross-hole radar, tracer, and hydraulic data demonstrates the value of combining time-lapse geophysical monitoring with conventional hydrologic measurements for improved characterization of a fractured-rock aquifer. Time-lapse difference-attenuation radar tomography was conducted during saline tracer experiments at the US Geological Survey Fractured Rock Hydrology Research Site near Mirror Lake, Grafton County, New Hampshire, USA. The presence of electrically conductive saline tracer effectively illuminates permeable fractures or pathways for geophysical imaging. The geophysical results guide the construction of three-dimensional numerical models of ground-water flow and solute transport. In an effort to explore alternative explanations for the tracer and tomographic data, a suite of conceptual models involving heterogeneous hydraulic conductivity fields and rate-limited mass transfer are considered. Calibration data include tracer concentrations, the arrival time of peak concentration at the outlet, and steady-state hydraulic head. Results from the coupled inversion procedure suggest that much of the tracer mass migrated outside the three tomographic image planes, and that solute is likely transported by two pathways through the system. This work provides basic and site-specific insights into the control of permeability heterogeneity on ground-water flow and solute transport in fractured rock.

New Hampshire