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At least 127 records · Page 7Linked to original sources

Optical-cell evidence for superheated ice under gas-hydrate-forming conditions

We previously reported indirect but compelling evidence that fine-grained H 2 O ice under elevated CH 4 gas pressure can persist to temperatures well above its ordinary melting point while slowly reacting to form methane clathrate hydrate. This phenomenon has now been visually verified by duplicating these experiments in an optical cell while observing the very slow hydrate-forming process as the reactants were warmed from 250 to 290 K at methane pressures of 23 to 30 MPa. Limited hydrate growth occurred rapidly after initial exposure of the methane gas to the ice grains at temperatures well within the ice subsolidus region. No evidence for continued growth of the hydrate phase was observed until samples were warmed above the equilibrium H 2 O melting curve. With continued heating, no bulk melting of the ice grains or free liquid water was detected anywhere within the optical cell until hydrate dissociation conditions were reached (292 K at 30 MPa), even though full conversion of the ice grains to hydrate requires 6−8 h at temperatures approaching 290 K. In a separate experimental sequence, unreacted portions of H 2 O ice grains that had persisted to temperatures above their ordinary melting point were successfully induced to melt, without dissociating the coexisting hydrate in the sample tube, by reducing the pressure overstep of the equilibrium phase boundary and thereby reducing the rate of hydrate growth at the ice−hydrate interface. Results from similar tests using CO 2 as the hydrate-forming species demonstrated that this superheating effect is not unique to the CH 4 −H 2 O system.

Journal of Physical Chemistry B

A large sediment accretion wave along a northern California littoral cell

The northern California littoral cell of the Klamath River, which is a mixed rocky and sandy system with significant shoreline curvature, was investigated by examining ∼40 yr of satellite-derived shoreline positions and historical records. We find that an accretion wave of sediment was initiated near the Klamath River mouth in the late 1980s and translated downcoast over the subsequent decades. The wave passed rapidly (∼2,500 m/yr) through a rocky coastal reach with more oblique wave directions and slowly through a sandy reach (∼200 m/yr) where wave crests approach at more normal angles. Within the sandy reach, the accretion wave extended over 200 m offshore, was ∼10 km long, incorporated 20 ± 6 million m 3 of sediment, and averaged 1.3 ± 0.4 million m 3 /yr of longshore sediment transport over a 20-yr interval. Diffusion of the accretion wave was observed, but the diffusivity coefficient ( ε obs ∼0.01 m 2 /s) was lower than values predicted by theory, which we attribute to net sediment transport convergence in the study area caused by the curvature of the shoreline. Examining historical records, we find that increased sediment discharge in the Klamath River occurred during the 20th century from industrial-scale logging and climatic extremes. Thus, we hypothesize that increased river sediment discharge introduced new sediment to the littoral cell that initiated the observed accretion wave. These hypotheses can be tested with stratigraphic and mineralogic investigations of the broad study area beach that has formed during the past 150 years.

California

XAFS measurements on zinc chloride aqueous solutions from ambient to supercritical conditions using the diamond anvil cell

The structure and bonding properties of metal complexes in subcritical and supercritical fluids are still largely unknown. Conventional high pressure and temperature cell designs impose considerable limitations on the pressure, temperature, and concentration of metal salts required for measurements on solutions under supercritical conditions. In this study, we demonstrate the first application of the diamond anvil cell, specially designed for x-ray absorption studies of first-row transition metal ions in supercritical fluids. Zn K-edge XAFS spectra were measured from aqueous solutions of 1-2 m ZnCl 2 and up to 6 m NaCl, at temperatures ranging from 25-660 °C and pressures up to 800 MPa. Our results indicate that the ZnCl 4 2- complex is predominant in the 1 m ZnCl 2 /6 m NaCl solution, while ZnCl 2 (H 2 O) 2 is similarly predominant in the 2 m ZnCl 2 solution, at all temperatures and pressures. The Zn-Cl bond length of both types of chlorozinc(II) complexes was found to decrease at a rate of about 0.01 Å/100 °C.

Journal of Synchrotron Radiation

Induction of antibody-producing cells in rainbow trout, Salmo gairdneri Richardson, by flush exposure

Splenic antibody-producing cells were produced by rainbow trout that had been exposed to O-antigens extracted from Yersinia ruckeri and Aeromonas salmonicida by adding the concentrated antigen preparation directly into the water of the tank holding the fish for a flush exposure. This method was compared with the proven techniques of exposure: intraperitoneal injection or a 2 minute immersion of the fish in the antigen preparation. Dosage experiments showed that the production of antibody-producing cells was induced by the immersion of trout for 2 minutes in water with 5.0 μg/ml-1 (or more) with the Y. ruckeri O-antigen, or 500 μg ml-1 (or more) of the A. salmonicida O-antigen. Similar differences were evident when the respective antigens were added directly to the water.

Journal of Fish Biology

Lymphocystis virus: Isolation and propagation in centrarchid fish cell lines

A virus from fish with lymphocystis disease was isolated in fish cell cultures. Eleven serial transfers were made and the pathognomonic lymphocystis cells were produced in vitro in each transfer. Fish inoculated with 6th- and 9th-passage material developed the disease, and virus was reisolated from them.

Science

Reduction of selenate to selenide by sulfate-respiring bacteria: Experiments with cell suspensions and estuarine sediments

Washed cell suspensions of Desulfovibrio desulfuricans subsp. aestuarii were capable of reducing nanomolar levels of selenate to selenide as well as sulfate to sulfide. Reduction of these species was inhibited by 1 mM selenate or tungstate. The addition of 1 mM sulfate decreased the reduction of selenate and enhanced the reduction of sulfate. Increasing concentrations of sulfate inhibited rates of selenate reduction but enhanced sulfate reduction rates. Cell suspensions kept in 1 mM selenate were incapable of reducing either selenate or sulfate when the selenate/sulfate ratio was ≥0.02, indicating that irreversible inhibition occurs at high selenate concentrations. Anoxic estuarine sediments having an active flora of sulfate-respiring bacteria were capable of a small amount of selenate reduction when ambient sulfate concentrations were low (<4 mM). These results indicate that sulfate is an inhibitor of the reduction of trace quantities of selenate. Therefore, direct reduction of traces of selenate to selenide by sulfate-respiring bacteria in natural environments is constrained by the ambient concentration of sulfate ions. The significance of this observation with regard to the role sediments play in sequestering selenium is discussed.

Applied and Environmental Microbiology

Degradation of methyl bromide by methanotrophic bacteria in cell suspensions and soils

Cell suspensions of Methylococcus capsulatus mineralized methyl bromide (MeBr), as evidenced by its removal from the gas phase, the quantitative recovery of Br - in the spent medium, and the production of 14 CO 2 from [ 14 C]MeBr. Methyl fluoride (MeF) inhibited oxidation of methane as well as that of [ 14 C]MeBr. The rate of MeBr consumption by cells varied inversely with the supply of methane, which suggested a competitive relationship between these two substrates. However, MeBr did not support growth of the methanotroph. In soils exposed to high levels (10,000 ppm) of MeBr, methane oxidation was completely inhibited. At this concentration, MeBr removal rates were equivalent in killed and live controls, which indicated a chemical rather than biological removal reaction. At lower concentrations (1,000 ppm) of MeBr, methanotrophs were active and MeBr consumption rates were 10-fold higher in live controls than in killed controls. Soils exposed to trace levels (10 ppm) of MeBr demonstrated complete consumption within 5 h of incubation, while controls inhibited with MeF or incubated without O 2 had 50% lower removal rates. Aerobic soils oxidized [ 14 C]MeBr to 14 CO 2 , and MeF inhibited oxidation by 72%. Field experiments demonstrated slightly lower MeBr removal rates in chambers containing MeF than in chambers lacking MeF. Collectively, these results show that soil methanotrophic bacteria, as well as other microbes, can degrade MeBr present in the environment.

Applied and Environmental Microbiology

Egg incubation position affects toxicity of air cell administered polychlorinated biphenyl 126 (3,3′,4,4′,5-pentachlorobiphenyl) in chicken (Gallus gallus) embryos

The avian egg is used extensively for chemical screening and determining the relative sensitivity of species to environmental contaminants (e.g., metals, pesticides, polyhalogenated compounds). The effect of egg incubation position on embryonic survival, pipping, and hatching success was examined following air cell administration of polychlorinated biphenyl (PCB) congener 126 (3,3',4,4',5-pentachlorobiphenyl [PCB 126]; 500-2,000 pg/g egg) on day 4 of development in fertile chicken ( Gallus gallus ) eggs. Depending on dose, toxicity was found to be up to nine times greater in vertically versus horizontally incubated eggs. This may be due to enhanced embryonic exposure to the injection bolus in vertically incubated eggs compared to more gradual uptake in horizontally incubated eggs. Following air cell administration of PCB 126, horizontal incubation of eggs may more closely approximate uptake and toxicity that has been observed with naturally incorporated contaminants. These data have implications for chemical screening and use of laboratory data for ecological risk assessments.

Environmental Toxicology and Chemistry

Seasonal to interannual morphodynamics along a high-energy dissipative littoral cell

A beach morphology monitoring program was initiated during summer 1997 along the Columbia River littoral cell (CRLC) on the coasts of northwest Oregon and southwest Washington, USA. This field program documents the seasonal through interannual morphological variability of these high-energy dissipative beaches over a variety of spatial scales. Following the installation of a dense network of geodetic control monuments, a nested sampling scheme consisting of cross-shore topographic beach profiles, three-dimensional topographic beach surface maps, nearshore bathymetric surveys, and sediment size distribution analyses was initiated. Beach monitoring is being conducted with state-of-the-art real-time kinematic differential global positioning system survey methods that combine both high accuracy and speed of measurement. Sampling methods resolve variability in beach morphology at alongshore length scales of approximately 10 meters to approximately 100 kilometers and cross-shore length scales of approximately 1 meter to approximately 2 kilometers. During the winter of 1997/1998, coastal change in the US Pacific Northwest was greatly influenced by one of the strongest El Nin??o events on record. Steeper than typical southerly wave angles resulted in alongshore sediment transport gradients and shoreline reorientation on a regional scale. The La Nin??a of 1998/1999, dominated by cross-shore processes associated with the largest recorded wave year in the region, resulted in net beach erosion along much of the littoral cell. The monitoring program successfully documented the morphological response to these interannual forcing anomalies as well as the subsequent beach recovery associated with three consecutive moderate wave years. These morphological observations within the CRLC can be generalized to explain overall system patterns; however, distinct differences in large-scale coastal behavior (e.g., foredune ridge morphology, sandbar morphometrics, and nearshore beach slopes) are not readily explained or understood.

Journal of Coastal Research

Detection of human enteric viruses in stream water with RT-PCR and cell culture

A multiplex RT-PCR method was used to measure virus occurrence at five stream water sites that span a range of hydroclimatic, water-quality, and land-use characteristics. The performance of the molecular method was evaluated in comparison with traditional cell culture and Escherichia coli membrane filtration assays. The study incorporated multiple quality controls and included a control for virus recovery during the sampling procedure as well as controls to detect potentially false-negative and false-positive data. Poliovirus recovery ranged from 16 to 65% and was variable, even in samples collected within the same stream. All five sites were positive for viruses by both molecular and cell culture-based virus assays. Enteroviruses, reoviruses, rotaviruses, and hepatitis A viruses were detected, but the use of the quality controls proved critical for interpretation of the molecular data. All sites showed evidence of faecal contamination, and culturable viruses were detected in four samples that would have met the US Environmental Protection Agency's recommended E. coli guideline for safe recreational water.

Journal of Water and Health

Least-squares refinement of powder diffraction data for unit cell parameters: Program listing for DEC 10 computer

This FORTRAN computer program is a time-sharing version of the classic program of Appleman and Evans (1973) and Evans, Appleman, and Handwerker (1963), which indexes powder patterns and refines unit-cell dimensions. The program, originally written to be processed in batch mode for an IBM computer, was modified to run in time-sharing mode on the DEC 10 computer. This version does not depart philosophically from the original program; however, the input and output formats have been adapted to the time-sharing terminal. These modifications and the actual running of the program are not discussed in detail here, as this report is intended only to make the program itself available. Examples of the input and output formats are shown on pages 3-8. Input can be entered through the terminal by two methods. An input file may either be independently created and then entered into the program later, or created directly through the interactive mode of the program. With the latter method a file of the input information may also be saved for later use. Both methods allow for the data to be edited after each refinement run. The output format has been changed to an 80-column width, common to many terminals. Only the last refinement cycle is printed and some of the statistical computations have been surpressed. Using the "Unit Cell" program from the terminal in a "real time" situation emphasizes the versatility of the program. This ability to interact directly with the computer gives the user a better appreciation of the program, its options, the data, and the problem being solved.

Open-File Report

Geology and preliminary hydrogeologic characterization of the cell-house site, Berlin, New Hampshire, 2003-04

At the cell-house site, thin, generally less than 20-foot thick overburden, consisting of till and demolition materials, overlies fractured crystalline bedrock. Bedrock at the site consists of gneiss with thin discontinuous lenses of chlorite schist and discontinuous tabular pegmatite. Two distinct fracture domains, with principal trends to the west and northwest, and to the north, overlap near the site. The cell-house site shows principal trends common to both domains. Gneiss is the most abundant rock at the site. Steeply dipping fractures within the gneiss terminate on subhorizontal contacts with pegmatite and on moderately dipping contacts with chlorite schist. Steeply northwest-dipping en Echelon fracture zones, parallel joint zones, and silicified brittle faults show consistent strikes to the northeast. Gently east-dipping to subhorizontal fractures, sub-parallel to gneissosity, strike northeast. The impermeable cap, barrier wall, and bedrock surface topography affect ground-water flow in the overburden. There is relatively little ground-water flow in the overburden in the capped area and a poor hydraulic connection between the overburden and the underlying bedrock over most of the site. The overburden beneath the cap may receive inflow through or beneath the barrier wall, or by flow through vertical fractures in the underlying bedrock beneath the barrier wall. The bedrock aquifer near the river is well connected to the river and head difference in the bedrock across the site are large (greater than 13 ft). Horizontal hydraulic conductivities of 0.2 to 20 ft/d were estimated for the bedrock. Individual fractures or fracture zones likely have hydraulic conductivities greater than the bulk rock. Subhorizontal fractures occur at pegmatite contacts or along chlorite schist lenses and may serve as ground-water conduits to the steeply dipping fractures in gneiss. The effective hydraulic conductivity across the site is likely to be in the low range of the estimated values (0.2 ft/d). Ground water discharges to the river from the bedrock aquifer and is greatest during periods of large river stage fluctuations.

Scientific Investigations Report

Cell penetrating peptide-mediated delivery of gene-silencing nucleic acids to the invasive common reed Phragmites australis via foliar application

As a popular tool for gene function characterization and gene therapy, RNA interference (RNAi)-based gene silencing has been increasingly explored for potential applications to control invasive species. At least two major hurdles exist when applying this approach to invasive plants: (1) the design and screening of species- and gene-specific biomacromolecules (i.e., gene-silencing agents or GSAs) made of DNA, RNA, or peptides that can suppress the expression of target genes efficiently, and (2) the delivery vehicle needed to penetrate plant cell walls and other physical barriers (e.g., leaf cuticles). In this study, we investigated the cell-penetrating peptide (CPP)-mediated delivery of multiple types of GSAs (e.g., double-stranded RNA (dsRNA), artificial microRNA (amiRNA), and antisense oligonucleotide (ASO)) to knock down a putative phytoene desaturase ( PDS ) gene in the invasive common reed ( Phragmites australis spp. australis ). Both microscopic and quantitative gene expression evidence demonstrated the CPP-mediated internalization of GSA cargos and transient suppression of PDS expression in both treated and systemic leaves up to 7 days post foliar application. Although various GSA combinations and application rates and frequencies were tested, we observed limitations, including low gene-silencing efficiency and a lack of physiological trait alteration, likely owing to low CPP payload capacity and the incomplete characterization of the PDS-coding genes (e.g., the recent discovery of two PDS paralogs) in P. australis . Our work lays a foundation to support further research toward the development of convenient, cost-effective, field-deployable, and environmentally benign gene-silencing technologies for invasive P. australis management.

Mississippi, Ohio

Toxicity of 6PPD alternatives to salmonid cell lines

Stormwater runoff in urban areas introduces numerous anthropogenic chemicals into surrounding aquatic environments. One such chemical is 6PPD ( N -(1,3-Dimethylbutyl)- N ’-phenyl- p- phenylenediamine), the primary antidegradant responsible for protecting tire rubber from ozone-induced degradation and cracking. When exposed to ozone on the road surface 6PPD is transformed into the toxic transformation product 6PPD-quinone (6PPDQ). This compound is highly lethal to coho salmon ( O ncorhynchus kisutch ), and 24 hour 50% lethal concentrations (LC 50 ; 41-95 ng/L) are frequently detected in urban streams during stormwater runoff events 1-5 . The highest stream concentrations of 6PPDQ and most extensive coho salmon mortality occur in high-traffic urban areas, where tire wear particles accumulate due to the frequent braking and acceleration of cars 6 . In the Seattle area, some coho salmon-bearing streams can lose over 90% of returning females prior to spawning due to 6PPDQ-containing runoff 7 . Prespawn loss of this magnitude could result in the extinction of some urban spawning populations 8 . Importantly, the lethal effects of 6PPDQ have been observed in several other salmonid species, indicating that its impact may threaten fish health for urban aquatic environments globally 9-11 . The ubiquity of 6PPD in automobile tires, high toxicity of the transformation product 6PPDQ, and prevalence of 6PPD and 6PPDQ in environmental matrices has spurred investigations into alternative rubber antiozonants to replace 6PPD that retain tire performance while reducing ecological harm. A technical memorandum provided to the legislature by the Washington State Department of Ecology summarized a list of potential 6PPD alternatives requiring further study, including several structurally similar p-phenylenediamines (PPDs) 12 . However, the structural similarity of other PPDs to 6PPD and their known production of quinone transformation products 13 raises concerns that they may elicit similar toxic effects as 6PPDQ. Currently, investigations into the toxicity of proposed PPD alternatives or their ozonated transformation products in coho salmon are limited, representing a significant data gap in evaluating whether they offer improved environmental safety over 6PPD. This project investigated the toxicity of proposed alternative rubber antiozonants in vitro using immortalized cell lines derived from three salmonid species with known differences in sensitivity to 6PPDQ (coho salmon, Chinook salmon ( O. tshawytscha ), rainbow trout ( O. mykiss )) 1 . These immortalized cell lines replicate toxic responses observed in in vivo studies, while enabling higher-throughput testing and reducing the need for animal use and other resource-intensive procedures. The antiozonants and their transformation products selected for testing were chosen based on multiple criteria, including their inclusion in the Ecology technical memorandum, structural substitutions (e.g., branched/cyclic alkyl vs aryl substitutions), commercial availability, and input from the Washington State Department of Ecology and other industry experts.

Report

Grid-cell-based crop water accounting for the famine early warning system

Rainfall monitoring is a regular activity of food security analysts for sub-Saharan Africa due to the potentially disastrous impact of drought. Crop water accounting schemes are used to track rainfall timing and amounts relative to phenological requirements, to infer water limitation impacts on yield. Unfortunately, many rain gauge reports are available only after significant delays, and the gauge locations leave large gaps in coverage. As an alternative, a grid-cell-based formulation for the water requirement satisfaction index (WRSI) was tested for maize in Southern Africa. Grids of input variables were obtained from remote sensing estimates of rainfall, meteorological models, and digital soil maps. The spatial WRSI was computed for the 1996–97 and 1997–98 growing seasons. Maize yields were estimated by regression and compared with a limited number of reports from the field for the 1996–97 season in Zimbabwe. Agreement at a useful level ( r = 0·80) was observed. This is comparable to results from traditional analysis with station data. The findings demonstrate the complementary role that remote sensing, modelling, and geospatial analysis can play in an era when field data collection in sub-Saharan Africa is suffering an unfortunate decline.

Hydrological Processes

Predicting the risk of toxic blooms of golden alga from cell abundance and environmental covariates

Golden alga ( Prymnesium parvum ) is a toxic haptophyte that has caused considerable ecological damage to marine and inland aquatic ecosystems worldwide. Studies focused primarily on laboratory cultures have indicated that toxicity is poorly correlated with the abundance of golden alga cells. This relationship, however, has not been rigorously evaluated in the field where environmental conditions are much different. The ability to predict toxicity using readily measured environmental variables and golden alga abundance would allow managers rapid assessments of ichthyotoxicity potential without laboratory bioassay confirmation, which requires additional resources to accomplish. To assess the potential utility of these relationships, several a priori models relating lethal levels of golden alga ichthyotoxicity to golden alga abundance and environmental covariates were constructed. Model parameters were estimated using archived data from four river basins in Texas and New Mexico (Colorado, Brazos, Red, Pecos). Model predictive ability was quantified using cross-validation, sensitivity, and specificity, and the relative ranking of environmental covariate models was determined by Akaike Information Criterion values and Akaike weights. Overall, abundance was a generally good predictor of ichthyotoxicity as cross validation of golden alga abundance-only models ranged from &sim; 80% to &sim; 90% (leave-one-out cross-validation). Environmental covariates improved predictions, especially the ability to predict lethally toxic events (i.e., increased sensitivity), and top-ranked environmental covariate models differed among the four basins. These associations may be useful for monitoring as well as understanding the abiotic factors that influence toxicity during blooms.

New Mexico, Texas

H4IIE rat hepatoma cell bioassay-derived 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents in colonial fish-eating waterbird eggs from the Great Lakes

Fish-eating waterbirds from the Great Lakes of North America have shown symptoms of poisoning similar to those observed in laboratory exposures of various avian species to planar halogenated hydrocarbons (PHHs). PHHs, include among others, polychlorinated biphenyls (PCBs), polychlorinated dibenzo- p -dioxins (PCDDs), and polychlorinated dibenzofurans (PCDFs) and have been implicated in some of the reproductive problems of Great Lakes waterbirds. The objectives of this study were to assess the overall potencies of PCB-containing extracts from colonial water-bird eggs taken from the Great Lakes and to compare the potencies with the location and spatial distribution of the colonies. The potencies of the extracts were assessed by their ability to induce cytochrome P450IA1-associated ethoxyresorufin O-deethylase (EROD) activity in H4IIE rat hepatoma cells as compared to the standard, 2,3,7,8-tetrachlorodibenzo- p -dioxin (TCDD). The H4IIE bioassay-derived TCDD-equivalents (TCCD-EQs) in the waterbird eggs concur with residue analyses and biological data from other studies. The greatest concentrations of TCDD-EQs were found in waterbird eggs from historically polluted, industrialized or urbanized areas in which the reproductive impairment of colonial waterbirds was most severe. However, significant concentrations of TCDD-EQs were detected at all sites tested; with a range of 49 to 415 pg TCDD-EQ/g egg, uncorrected for extraction efficiencies. The H4IIE bioassay proved to be a useful biomonitoring tool to assess the overall potency of complex PHH mixtures in environmental samples.

Beaver Island Group, Green Bay, Lake Erie, Lake Hu