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At least 1,243 records · Page 69Linked to original sources
USGS2016

Patterns and drivers for wetland connections in the Prairie Pothole Region, United States

Ecosystem function in rivers, lakes and coastal waters depends on the functioning of upstream aquatic ecosystems, necessitating an improved understanding of watershed-scale interactions including variable surface-water flows between wetlands and streams. As surface water in the Prairie Pothole Region expands in wet years, surface-water connections occur between many depressional wetlands and streams. Minimal research has explored the spatial patterns and drivers for the abundance of these connections, despite their potential to inform resource management and regulatory programs including the U.S. Clean Water Act. In this study, wetlands were identified that did not intersect the stream network, but were shown with Landsat images (1990–2011) to become merged with the stream network as surface water expanded. Wetlands were found to spill into or consolidate with other wetlands within both small (2–10 wetlands) and large (>100 wetlands) wetland clusters, eventually intersecting a stream channel, most often via a riparian wetland. These surface-water connections occurred over a wide range of wetland distances from streams (averaging 90–1400 m in different ecoregions). Differences in the spatial abundance of wetlands that show a variable surface-water connection to a stream were best explained by smaller wetland-to-wetland distances, greater wetland abundance, and maximum surface-water extent. This analysis demonstrated that wetland arrangement and surface water expansion are important mechanisms for depressional wetlands to connect to streams and provides a first step to understanding the frequency and abundance of these surface-water connections across the Prairie Pothole Region.

Minnesota, North Dakota, South Dakota↗
USGS2020

Cytology reveals diverse cell morphotypes and cellin-cell interactions in normal collector sea urchins Tripneustes gratilla

Echinoderms such as sea urchins are important in marine ecosystems, particularly as grazers, and unhealthy sea urchins can have important ecological implications. For instance, unexplained mortalities of Diadema antillarum in the Caribbean were followed by algal overgrowth and subsequent collapse of coral reef ecosystems. Unfortunately, few tools exist to evaluate echinoderm health, making management of mortalities or other health issues problematic. Hematology is often used to assess health in many animal groups, including invertebrates, but is seldom applied to echinoderms. We used a standard gravitometric technique to concentrate fixed coelomocytes from the collector sea urchin Tripneustes gratilla onto microscope slides, permitting staining and enumeration. Using Romanowsky stain and electron microscopy to visualize cell details, we found that urchin cells could be partitioned into different morphotypes. Specifically, we enumerated phagocytes, phagocytes with perinuclear cytoplasmic dots, vibratile cells, colorless spherule cells, red spherule cells, and red spherule cells with pink granules. We also saw cell-in-cell interactions characterized by phagocytes apparently phagocytizing mainly the motile cells including red spherule cells, colorless spherule cells, and vibratile cells disproportionate to underlying populations of circulating cells. Cell-in-cell interactions were seen in 71% of sea urchins, but comprised <1% of circulating cells. Finally, about 40% of sea urchins had circulating phagocytes that were apparently phagocytizing spicules. The coelomic fluid collection and slide preparation methods described here are simple, field portable, and might be a useful complementary tool for assessing health of other marine invertebrates, revealing heretofore unknown physiological phenomena in this animal group.

Hawaii↗
USGS2023

Stream hydrology and a pulse subsidy shape patterns of fish foraging

Pulsed subsidy events create ephemeral fluxes of hyper-abundant resources that can shape annual patterns of consumption and growth for recipient consumers. However, environmental conditions strongly affect local resource availability for much of the year, and can heavily impact consumer foraging and growth patterns prior to pulsed subsidy events. Thus, a consumer's capacity to exploit pulse subsidy resources may be influenced by antecedent environmental conditions, but this has rarely been shown in nature and is unknown in aquatic ecosystems. Here, we sought to understand the importance of hydrologic variation and a salmon pulse subsidy on the foraging and growth patterns of two stream salmonids in a coastal southeast Alaska drainage. To do this, we sampled fish stomach contents at a high temporal frequency (daily–weekly measurements) and analyzed fish consumption rates in relation to streamflow and pulse subsidy resource availability. We then explored the influence of interannual hydrologic variation on access to pulse subsidy resources (i.e. whether fish exceeded an egg consumption gape limit) in a bioenergetic simulation. Prior to Pink Salmon spawning, Dolly Varden and Coho Salmon displayed distinct and nonlinear flow-foraging relationships, where forage for both species consisted primarily of macroinvertebrates. During this time period, consumption maxima coincided with baseflow and the highest observed flow conditions, and consumption minima were observed at severe low-water and intermediate flow values. After salmon spawning began, forage was not significantly related to flow and consisted primarily of salmon eggs. Further, consumption rates increased overall, and foraging patterns did not appear to be affected by flow in either species. Bioenergetic simulations revealed that patterns of interannual hydrologic variation may shift Coho Salmon growth trajectories among years. Together, our results suggest that access to marine pulse subsidy resources may depend on whether antecedent hydrologic conditions are suitable for juvenile salmonids to grow large enough to consume salmon eggs by the onset of spawning.

Alaska↗
USGS2017

Meteorological drivers of hypolimnetic anoxia in a eutrophic, north temperate lake

Oxygen concentration is both an indicator and driver of water quality in lakes. Decreases in oxygen concentration leads to altered ecosystem function as well as harmful consequences for aquatic biota, such as fishes. The responses of oxygen dynamics in lakes to climate-related drivers, such as temperature and wind speed, are well documented for lake surface waters. However, much less is known about how the oxic environment of bottom waters, especially the timing and magnitude of anoxia in eutrophic lakes, responds to changes in climate drivers. Understanding how important ecosystem states, such as hypolimnetic anoxia, may respond to differing climate scenarios requires a model that couples physical-biological conditions and sufficiently captures the density stratification that leads to strong oxygen gradients. Here, we analyzed the effects of changes in three important meteorological drivers (air temperature, wind speed, and relative humidity) on hypolimnetic anoxia in a eutrophic, north temperate lake using the anoxic factor as an index that captures both the temporal and spatial extent of anoxia. Air temperature and relative humidity were found to have a positive correlation with anoxic factor, while wind speed had a negative correlation. Air temperature was found to have the greatest potential impact of the three drivers on the anoxic factor, followed by wind speed and then relative humidity. Across the scenarios of climate variability, variation in the simulated anoxic factor was primarily due to changes in the timing of onset and decay of stratification. Given the potential for future changes in climate, especially increases in air temperature, this study provides important insight into how these changes will alter lake water quality.

Ecological Modelling↗
USGS2006

Patterns of fish use and piscivore abundance within a reconnected saltmarsh impoundment in the northern Indian River Lagoon, Florida

Nearly all saltmarshes in east-central, Florida were impounded for mosquito control during the 1960s. The majority of these marshes have since been reconnected to the estuary by culverts, providing an opportunity to effectively measure exchange of aquatic organisms. A multi-gear approach was used monthly to simultaneously estimate fish standing stock (cast net), fish exchange with the estuary (culvert traps), and piscivore abundance (gill nets and bird counts) to document patterns of fish use in a reconnected saltmarsh impoundment. Changes in saltmarsh fish abundance, and exchange of fish with the estuary reflected the seasonal pattern of marsh flooding in the northern Indian River Lagoon system. During a 6-month period of marsh flooding, resident fish had continuous access to the marsh surface. Large piscivorous fish regularly entered the impoundment via creeks and ditches to prey upon small resident fish, and piscivorous birds aggregated following major fish movements to the marsh surface or to deep habitats. As water levels receded in winter, saltmarsh fish concentrated into deep habitats and emigration to the estuary ensued (200% greater biomass left the impoundment than entered). Fish abundance and community structure along the estuary shoreline (although fringed with marsh vegetation) were not analogous to marsh creeks and ditches. Perimeter ditches provided deep-water habitat for large estuarine predators, and shallow creeks served as an alternative habitat for resident fish when the marsh surface was dry. Use of the impoundment as nursery by transients was limited to Mugil cephalus Linnaeus, but large juvenile and adult piscivorous fish used the impoundment for feeding. In conclusion, the saltmarsh impoundment was a feeding site for piscivorous fish and birds, and functioned as a net exporter of forage fish to adjacent estuarine waters. ?? Springer 2006.

Wetlands Ecology and Management↗
USGS2010

Assessment of ecological conditions and potential effects of water produced from coalbed natural gas development on biological communities in streams of the Powder River structural basin, Wyoming and Montana, 2005-08

Ongoing development of coalbed natural gas in the Powder River structural basin in Wyoming and Montana led to formation of an interagency task group to address concerns about the effects of the resulting production water on biological communities in streams of the area. The interagency task group developed a monitoring plan and conducted sampling of macroinvertebrate, algal, and fish communities at 47 sites during 2005-08 to document current ecological conditions and determine existing and potential effects of water produced from coalbed natural gas development on biological communities. Macroinvertebrate, algal, and fish community composition varied between drainage basins, among sites within drainage basins, and by year. Macroinvertebrate communities of the main-stem Tongue River were characterized by higher taxa richness and higher abundance of Ephemeroptera, for example, compared to macroinvertebrate communities in plains tributaries of the Tongue River and the main-stem Powder River. Fish communities of the Tongue River were characterized by higher taxa richness and abundance of introduced species compared to the Powder River where native species were dominant. Macroinvertebrate community metric values from sites in the middle reach of the main-stem Powder River, from below Willow Creek to below Crazy Woman Creek, differed from metric values in the upper and lower reaches of the Powder River. Metrics indicative of communitywide differences included measures of taxa richness, relative abundance, feeding mode, and tolerance. Some of the variation in the macroinvertebrate communities could be explained by variation in environmental variables, including physical (turbidity, embeddedness, bed substrate size, and streamflow) and chemical (alkalinity and specific conductance) variables. Of these environmental variables, alkalinity was the best indicator of coalbed natural gas development because of the sodiumbicarbonate signature of the production water. Algal samples from the main-stem Powder River generally confirmed the pattern observed in the macroinvertebrate communities. Algal communities at sites in the middle reach of the Powder River commonly were characterized by dominance by a single taxon and by low biovolume of algae compared to other sites. In contrast to the macroinvertebrate and algal communities, species richness of fish communities was highest in the middle reach of the Powder River. Although a few significant differences in fish metrics were determined along the main-stem Powder River, the differences did not correspond to the pattern observed for the macroinvertebrate and algae communities. Differences in biological communities were noted between years, potentially due to the effects of drought. Macroinvertebrate community metrics, such as Diptera taxa richness, were significantly different in the severe drought year of 2006 from metric values in 2005 and 2007-08. Waterquality data collected during the study indicated that, with few exceptions, water-quality constituents generally did not exceed State or Federal acute and chronic criteria for the protection of aquatic life.

Scientific Investigations Report↗
USGS2019

Modeling control of Common Carp (Cyprinus carpio) in a shallow lake–wetland system

The introduction of Common Carp (Cyprinus carpio) into North American waterways has led to widespread alteration of aquatic ecosystems. Control of this invader has proven extremely difficult due to its capacity for rapid population growth. To help understand how Common Carp can potentially be controlled we developed a population dynamics model (CarpMOD) to explore the efficacy of active and passive control measures that impose mortality on multiple life stages (embryos, juveniles and adults). We applied CarpMOD to Common Carp in Malheur Lake, a large shallow lake in Southeast Oregon, USA. Simulated control measures included commercial harvest of adults, trapping of juveniles, embryo electroshocking, and passive removal imposed via avian predation. Results from CarpMOD suggest that no single active removal method would decrease Common Carp biomass below the targeted 50 kg/ha threshold. Combinations of two or all three active removal methods could, however, reduce biomass below the desired threshold due to cumulative mortality on multiple life stages. CarpMOD simulations suggest that the level of carp removal necessary to reach the desired biomass threshold is approximately 40% at each life-stage, which may be unrealistic to maintain over longer time scales. Passive removal via avian predation may also contribute to suppression of Common Carp, but was not sufficient in isolation to reduce biomass below the desired threshold. Collectively, our results indicate control of Common Carp as a sole means of ecosystem restoration is unlikely to be effective in the system we modeled. This suggests additional means of restoration may be warranted, perhaps in combination with control of Common Carp, or development of more effective control measures.

Oregon↗
USGS2009

Summary of surface-water quality data from the Illinois River Basin in Northeast Oklahoma, 1970-2007

The quality of streams in the Illinois River Basin of northeastern Oklahoma is potentially threatened by increased quantities of wastes discharged from increasing human populations, grazing of about 160,000 cattle, and confined animal feeding operations raising about 20 million chickens. Increasing numbers of humans and livestock in the basin contribute nutrients and bacteria to surface water and groundwater, causing greater than the typical concentrations of those constituents for this region. Consequences of increasing contributions of these substances can include increased algal growth (eutrophication) in streams and lakes; impairment of habitat for native aquatic animals, including desirable game fish species; impairment of drinking-water quality by sediments, turbidity, taste-and-odor causing chemicals, toxic algal compounds, and bacteria; and reduction in the aesthetic quality of the streams. The U.S. Geological Survey, in cooperation with the Oklahoma Scenic Rivers Commission, prepared this report to summarize the surface-water-quality data collected by the U.S. Geological Survey at five long-term surface-water-quality monitoring sites. The data summarized include major ions, nutrients, sediment, and fecal-indicator bacteria from the Illinois River Basin in Oklahoma for 1970 through 2007. General water chemistry, concentrations of nitrogen and phosphorus compounds, chlorophyll-a (an indicator of algal biomass), fecal-indicator bacteria counts, and sediment concentrations were similar among the five long-term monitoring sites in the Illinois River Basin in northeast Oklahoma. Most water samples were phosphorus-limited, meaning that they contained a smaller proportion of phosphorus, relative to nitrogen, than typically occurs in algal tissues. Greater degrees of nitrogen limitation occurred at three of the five sites which were sampled back to the 1970s, probably due to use of detergents containing greater concentrations of phosphorus than in subsequent periods. Concentrations of nitrogen, phosphorus, and sediment, and counts of bacteria generally increased with streamflow at the five sites, probably due to runoff from the land surface and re-suspension of streambed sediments. Phosphorus concentrations typically exceeded the Oklahoma standard of 0.037 milligrams per liter for Scenic Rivers. Concentrations of chlorophyll-a in phytoplankton in water samples collected at the five sites were not well correlated with streamflow, nor to concentrations of the nutrients nitrogen and phosphorus, probably because much of the algae growing in these streams are periphyton attached to streambed cobbles and other debris, rather than phytoplankton in the water column. Sediment concentrations correlated with phosphorus concentrations in water samples collected at the sites, probably due to sorption of phosphorus to soil particles and streambed sediments and runoff of soils and animal wastes at the land surface and resuspension of streambed sediments and phosphorus during wet, high-flow periods. Fecal coliform bacteria counts at the five sites sometimes exceeded the Oklahoma Primary Body Contact Standard of 400 colonies per 100 milliliters when streamflows were greater than 1000 cubic feet per second. Ultimately, Lake Tenkiller, an important ecological and economic resource for the region, receives the compounds that runoff the land surface or seep to local streams from groundwater in the basin. Because of eutrophication from increased nutrient loading, Lake Tenkiller is listed for impairment by diminished dissolved oxygen concentrations, phosphorus, and chlorophyll-a by the State of Oklahoma in evaluation of surface-water quality required by section 303d of the Clean Water Act. Stored phosphorus in soils and streambed and lakebed sediments may continue to provide phosphorus to local streams and lakes for decades to come. Steps are being made to reduce local sources of phosphorus, including upgrades in capacity and effective

Arkansas, Oklahoma↗
USGS2013

Factors influencing detection of eDNA from a stream-dwelling amphibian

Environmental DNA (eDNA) methods for detecting and estimating abundance of aquatic species are emerging rapidly, but little is known about how processes such as secretion rate, environmental degradation, and time since colonization or extirpation from a given site affect eDNA measurements. Using stream-dwelling salamanders and quantitative PCR (qPCR) analysis, we conducted three experiments to assess eDNA: (i) production rate; (ii) persistence time under different temperature and light conditions; and (iii) detectability and concentration through time following experimental introduction and removal of salamanders into previously unoccupied streams. We found that 44–50 g individuals held in aquaria produced 77 ng eDNA/h for 2 h, after which production either slowed considerably or began to equilibrate with degradation. eDNA in both full-sun and shaded treatments degraded exponentially to <1% of the original concentration after 3 days. eDNA was no longer detectable in full-sun samples after 8 days, whereas eDNA was detected in 20% of shaded samples after 11 days and 100% of refrigerated control samples after 18 days. When translocated into unoccupied streams, salamanders were detectable after 6 h, but only when densities were relatively high (0.2481 individuals/m 2 ) and when samples were collected within 5 m of the animals. Concentrations of eDNA detected were very low and increased steadily from 6–24 h after introduction, reaching 0.0022 ng/L. Within 1 h of removing salamanders from the stream, eDNA was no longer detectable. These results suggest that eDNA detectability and concentration depend on production rates of individuals, environmental conditions, density of animals, and their residence time.

Molecular Ecology Resources↗
USGS2015

A food web modeling analysis of a Midwestern, USA eutrophic lake dominated by non-native Common Carp and Zebra Mussels

Food web modeling is recognized as fundamental to understanding the complexities of aquatic systems. Ecopath is the most common mass-balance model used to represent food webs and quantify trophic interactions among groups. We constructed annual Ecopath models for four consecutive years during the first half-decade of a zebra mussel invasion in shallow, eutrophic Clear Lake, Iowa, USA, to evaluate changes in relative biomass and total system consumption among food web groups, evaluate food web impacts of non-native common carp and zebra mussels on food web groups, and to interpret food web impacts in light of on-going lake restoration. Total living biomass increased each year of the study; the majority of the increase due to a doubling in planktonic blue green algae, but several other taxa also increased including a more than two-order of magnitude increase in zebra mussels. Common carp accounted for the largest percentage of total fish biomass throughout the study even with on-going harvest. Chironomids, common carp, and zebra mussels were the top-three ranking consumer groups. Non-native common carp and zebra mussels accounted for an average of 42% of the total system consumption. Despite the relatively high biomass densities of common carp and zebra mussel, food web impacts was minimal due to excessive benthic and primary production in this eutrophic system. Consumption occurring via benthic pathways dominated system consumption in Clear Lake throughout our study, supporting the argument that benthic food webs are significant in shallow, eutrophic lake ecosystems and must be considered if ecosystem-level understanding is to be obtained.

Iowa↗
USGS2021

Mapping climate change vulnerability of aquatic-riparian ecosystems using decision-relevant indicators

Climate change has and is projected to continue to alter historical regimes of temperature, precipitation, and hydrology. To assess the vulnerability of climate change from a land management perspective and spatially identify where the most extreme changes are anticipated to occur, we worked in collaboration with land managers to develop a climate change vulnerability map for the midwestern United States with a focus on riparian systems. The map is intended for use by regional administrators to help them work across various program areas (e.g. fisheries, endangered species) to prioritize locations needing support for adaptation planning. The tool can also be utilized locally by managers to better understand the effects that projected climate scenarios have on the hydrology of management units as they develop adaptation strategies. The vulnerability map is watershed-based (360 watershed units within the region) and combines 15 climate change indicators that were selected by U.S. Fish and Wildlife Service natural resource managers based upon known and anticipated effects to species and habitats. The projected change in each of these indicators from the historical period (1986–2005) to the future period (2040–2059) was aggregated into a composite score for each watershed. Landscape-scale metrics reflective of a watershed’s adaptive capacity were combined with the climate change indicators to produce a vulnerability score. We found sub-regional variation in vulnerability to climate change with the greatest vulnerability in Iowa, central Illinois, and northwest Ohio. Greater vulnerability was seen in the higher greenhouse gas concentration scenario, Representative Concentration Pathway (RCP) 8.5 compared to the lower greenhouse gas concentration scenario RCP 4.5, when looking at the mean of the five downscaled climate models used in this study. By quantifying and mapping climate change vulnerability, natural resource managers can better understand the degree of vulnerability for individual watersheds and identify areas of prioritization in regional and local planning efforts.

Iowa, Illinois, Indiana, Michigan, Minnesota, Miss↗
USGS2023

Less is more: Less herbicide does more when biological control is present in Pontederia crassipes

An experiment along with simulation modeling was applied to study the combinations of herbicide treatment and biological control that best limit invasive water hyacinth ( Pontederia crassipes , formerly Eichhornia crassipes ) in freshwater aquatic systems. The experiment consisted of 14 different treatments of P. crassipes in 1.67 m 2 outdoor tank mesocosms. Seven treatments were with and seven were without insect biological control agents, Neochetina eichhorniae . In both of the sets of seven treatments, there was one no-herbicide treatment, a one-time full-strength herbicide treatment with 40 %, 80 % and 100 % coverage of the P. crassipes , and a one-time half-strength herbicide treatment with 40 %, 80 %, and 100 % surface area coverage. An overarching hypothesis was that leaving part of a tank unsprayed, providing habitat for the maintenance of biological control agents, would optimize control. Data from the experiment, measured on five days over the 167-day period, were used to calibrate a difference equation model of P. crassipes with and without the biological control agent. The model was then used to project longer term dynamics of the system. The model predicted that an initial one-time herbicide treatment, combined with application of the biocontrol agent at 80 % areal coverage, could maintain P. crassipes at levels lower than the carrying capacity of the plant's biomass over the long term, though not enough that N. eichhorniae would be considered, by itself, a highly effective control. However, the results suggest that a combination of biocontrol with 80 % spraying coverage every 600 days or so would be an effective integrated biocontrol strategy for maintaining decreased P. crassipes biomass at low levels over the long term.

Ecological Modelling↗
USGS2004

Implications of hydrologic variability on the succession of plants in Great Lakes wetlands

Primary succession of plant communities directed toward a climax is not a typical occurrence in wetlands because these ecological systems are inherently dependent on hydrology, and temporal hydrologic variability often causes reversals or setbacks in succession. Wetlands of the Great Lakes provide good examples for demonstrating the implications of hydrology in driving successional processes and for illustrating potential misinterpretations of apparent successional sequences. Most Great Lakes coastal wetlands follow cyclic patterns in which emergent communities are reduced in area or eliminated by high lake levels and then regenerated from the seed bank during low lake levels. Thus, succession never proceeds for long. Wetlands also develop in ridge and swale terrains in many large embayments of the Great Lakes. These formations contain sequences of wetlands of similar origin but different age that can be several thousand years old, with older wetlands always further from the lake. Analyses of plant communities across a sequence of wetlands at the south end of Lake Michigan showed an apparent successional pattern from submersed to floating to emergent plants as water depth decreased with wetland age. However, paleoecological analyses showed that the observed vegetation changes were driven largely by disturbances associated with increased human settlement in the area. Climate-induced hydrologic changes were also shown to have greater effects on plant-community change than autogenic processes. Other terms, such as zonation, maturation, fluctuations, continuum concept, functional guilds, centrifugal organization, pulse stability, and hump-back models provide additional means of describing organization and changes in vegetation; some of them overlap with succession in describing vegetation processes in Great Lakes wetlands, but each must be used in the proper context with regard to short- and long-term hydrologic variability.

Aquatic Ecosystem Health & Management↗
USGS2019

Does incorporating gear selectivity during macroscale investigations of fish growth reduce size-selective sampling bias in parameter estimates?

Understanding of fish growth, the spatial variability in individual growth, and the potential drivers of such variability is a fundamental component of many ecological investigations. However, sampling gears are always size-selective, and this selectivity can result in biased parameter estimates that can lead to, for example, biased stock assessments that use growth estimates. Using seven flathead catfish ( Pylodictis olivaris ) populations from across the USA as an example, we investigated to what degree the incorporation of gear selectivity in growth models reduces size-selective bias in the estimation of growth parameters during macroscale investigations of fish growth. We developed a series of simulation scenarios by combining different sampling methods to obtain fish samples and different gear selectivity assumptions to estimate parameters. Results showed that the efficacy of incorporating gear selectivity in growth models to reduce size-selective sampling bias during macroscale investigations depends on multiple factors, including ( i ) the size distribution of small and large fish in the sample (which is a function of sampling methods), and ( ii ) consistency of sampling methods across populations. Incorporation of gear selectivity may reduce bias when data are lacking for large fish and when sampling methods are inconsistent across populations. Demographics of the sampled populations and the growth parameter of interest can also affect the utility of directly incorporating gear selectivity into growth models. Because multiple factors can influence the efficacy of incorporating gear selectivity into growth models, the decision to do so likely needs to be made on a case-by-case basis. This study extends the existing gear selectivity research by focusing on macroscale fish growth investigations across multiple populations and provides guidance on how to handle gear selectivity assumptions during such investigations.

Canadian Journal Fisheries and Aquatic Sciences↗
USGS2020

Climate change vulnerability assessment for Pacific Lamprey in rivers of the Western United States

Pacific Lamprey (Entosphenus tridentatus) are a native anadromous species that, like salmon, historically returned to spawn in large numbers in watersheds along the west coast of the United States (U.S.). Lamprey play a vital role in river ecosystems and are one of the oldest vertebrates that have persisted over time likely influencing the evolution of many aquatic species. Pacific Lamprey have declined in abundance and are restricted in distribution throughout Washington, Oregon, Idaho and California. A key uncertainty influencing Pacific Lamprey status is the impact of climate change. We modified the NatureServe Climate Change Vulnerability Index (CCVI) to accommodate climate predictions from the International Panel on Climate Change. Using downscaled information, we characterized changes in 15 rivers occupied by Pacific Lamprey in the western U.S. We evaluated this risk under Representative Concentration Pathways (RCP) 4.5 and 8.5 for two time periods (mid-century 2040–2069 and end-century 2070–2099). The CCVI scores generally increased when going from RCP 4.5 to RCP 8.5 in three Global Climate Models for both mid-century and end-century, which our analyses forecasts degraded stream temperature and hydrologic conditions under increasing greenhouse gas emissions. The geographically assessed results suggest that climate change impacts to Pacific Lamprey vulnerability are magnified in highly altered rivers. If we continue to observe greenhouse gas emission levels associated with the RCP 8.5, Pacific Lamprey will be at greater risk to climate change impacts. In order to mitigate the risk from climate change toward the end of the century, additional actions will need to be prioritized to rapidly reduce the impact of these threats such as increasing flow, creating backwater habitat, restoring riparian vegetation and reducing stream disturbances. The findings revealed the patterns of vulnerability for Pacific Lamprey across their U.S. range are informative for prioritizing river restoration actions when paired with regional implementation plans.

California, Washington, Oregon, Idaho↗
USGS2006

Denitrification across landscapes and waterscapes: A synthesis

Denitrification is a critical process regulating the removal of bioavailable nitrogen (N) from natural and human-altered systems. While it has been extensively studied in terrestrial, freshwater, and marine systems, there has been limited communication among denitrification scientists working in these individual systems. Here, we compare rates of denitrification and controlling factors across a range of ecosystem types. We suggest that terrestrial, freshwater, and marine systems in which denitrification occurs can be organized along a continuum ranging from (1) those in which nitrification and denitrification are tightly coupled in space and time to (2) those in which nitrate production and denitrification are relatively decoupled. In aquatic ecosystems, N inputs influence denitrification rates whereas hydrology and geomorphology influence the proportion of N inputs that are denitrified. Relationships between denitrification and water residence time and N load are remarkably similar across lakes, river reaches, estuaries, and continental shelves. Spatially distributed global models of denitrification suggest that continental shelf sediments account for the largest portion (44%) of total global denitrification, followed by terrestrial soils (22%) and oceanic oxygen minimum zones (OMZs; 14%). Freshwater systems (groundwater, lakes, rivers) account for about 20% and estuaries 1% of total global denitrification. Denitrification of land-based N sources is distributed somewhat differently. Within watersheds, the amount of land-based N denitrified is generally highest in terrestrial soils, with progressively smaller amounts denitrified in groundwater, rivers, lakes and reservoirs, and estuaries. A number of regional exceptions to this general trend of decreasing denitrification in a downstream direction exist, including significant denitrification in continental shelves of N from terrestrial sources. Though terrestrial soils and groundwater are responsible for much denitrification at the watershed scale, per-area denitrification rates in soils and groundwater (kg N·km −2 ·yr −1 ) are, on average, approximately one-tenth the per-area rates of denitrification in lakes, rivers, estuaries, continental shelves, or OMZs. A number of potential approaches to increase denitrification on the landscape, and thus decrease N export to sensitive coastal systems exist. However, these have not generally been widely tested for their effectiveness at scales required to significantly reduce N export at the whole watershed scale.

Ecological Applications↗
USGS2021

Nuclear eDNA estimates population allele frequencies and abundance in experimental mesocosms

Advances in environmental DNA (eDNA) methodologies have led to improvements in the ability to detect species and communities in aquatic environments, yet the majority of studies emphasize biological diversity at the species level by targeting variable sites within the mitochondrial genome. Here, we demonstrate that eDNA approaches also have the capacity to detect intraspecific diversity in the nuclear genome, allowing for assessments of population-level genetic diversity and estimates of the number of genetic contributors in a sample. Using a panel of microsatellite loci, we evaluated intraspecific genetic diversity in the round goby (Neogobius melanostomus) using eDNA samples from experimental mesocosms. First, we tested the similarity between eDNA and individual tissue-based estimates of allele frequencies. Subsequently, we used a likelihood-based DNA mixture framework to estimate the number of unique genetic contributors in mesocosm eDNA samples and in simulated mixtures of alleles. Allele frequencies from eDNA accurately reflected allele frequencies from genotyped round goby tissue samples, indicating nuclear markers can be reliably amplified from water samples under controlled conditions. DNA mixture analyses were able to estimate the number of genetic contributors from eDNA samples and simulated mixtures of DNA from up to 58 individuals, with the degree of positive or negative bias dependent on the filtering scheme of low-frequency alleles. This study is the first to document the application of eDNA and multiple amplicon-based methods to obtain intraspecific nuclear genetic information and estimate the absolute abundance of a species in mesocosms. With proper validation, this approach has the potential to advance non-invasive survey methods to characterize populations and broadens the application of eDNA methodologies to inform population-level management objectives.

New York↗
USGS2018

Assessing historical and projected carbon balance of Alaska: A synthesis of results and policy/management implications

We summarize the results of a recent interagency assessment of land carbon dynamics in Alaska, in which carbon dynamics were estimated for all major terrestrial and aquatic ecosystems for the historical period (1950–2009) and a projection period (2010–2099). Between 1950 and 2009, upland and wetland (i.e., terrestrial) ecosystems of the state gained 0.4 Tg C/yr (0.1% of net primary production, NPP), resulting in a cumulative greenhouse gas radiative forcing of 1.68 × 10 −3 W/m 2 . The change in carbon storage is spatially variable with the region of the Northwest Boreal Landscape Conservation Cooperative (LCC) losing carbon because of fire disturbance. The combined carbon transport via various pathways through inland aquatic ecosystems of Alaska was estimated to be 41.3 Tg C/yr (17% of terrestrial NPP). During the projection period (2010–2099), carbon storage of terrestrial ecosystems of Alaska was projected to increase (22.5–70.0 Tg C/yr), primarily because of NPP increases of 10–30% associated with responses to rising atmospheric CO 2 , increased nitrogen cycling, and longer growing seasons. Although carbon emissions to the atmosphere from wildfire and wetland CH 4 were projected to increase for all of the climate projections, the increases in NPP more than compensated for those losses at the statewide level. Carbon dynamics of terrestrial ecosystems continue to warm the climate for four of the six future projections and cool the climate for only one of the projections. The attribution analyses we conducted indicated that the response of NPP in terrestrial ecosystems to rising atmospheric CO 2 (~5% per 100 ppmv CO 2 ) saturates as CO 2 increases (between approximately +150 and +450 ppmv among projections). This response, along with the expectation that permafrost thaw would be much greater and release large quantities of permafrost carbon after 2100, suggests that projected carbon gains in terrestrial ecosystems of Alaska may not be sustained. From a national perspective, inclusion of all of Alaska in greenhouse gas inventory reports would ensure better accounting of the overall greenhouse gas balance of the nation and provide a foundation for considering mitigation activities in areas that are accessible enough to support substantive deployment.

Alaska↗