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USGS2021

Global commitments to conserving and monitoring genetic diversity are now necessary and feasible

Global conservation policy and action have largely neglected protecting and monitoring genetic diversity—one of the three main pillars of biodiversity. Genetic diversity (diversity within species) underlies species’ adaptation and survival, ecosystem resilience, and societal innovation. The low priority given to genetic diversity has largely been due to knowledge gaps in key areas, including the importance of genetic diversity and the trends in genetic diversity change; the perceived high expense and low availability and the scattered nature of genetic data; and complicated concepts and information that are inaccessible to policymakers. However, numerous recent advances in knowledge, technology, databases, practice, and capacity have now set the stage for better integration of genetic diversity in policy instruments and conservation efforts. We review these developments and explore how they can support improved consideration of genetic diversity in global conservation policy commitments and enable countries to monitor, report on, and take action to maintain or restore genetic diversity.

BioScience↗
USGS2018

Development of a species status assessment process for decisions under the U.S. Endangered Species Act

Decisions under the U.S. Endangered Species Act (ESA) require scientific input on the risk that the species will become extinct. A series of critiques on the role of science in ESA decisions have called for improved consistency and transparency in species risk assessments and clear distinctions between science input and policy application. To address the critiques and document the emerging practice of the U.S. Fish and Wildlife Service (USFWS), we outline an assessment process based on principles and practices of risk and decision analyses that results in a scientific report on species status. The species status assessment (SSA) process has three successive stages: 1) document the life history and ecological relationships of the species in question to provide the foundation for the assessment, 2) describe and hypothesize causes for the current condition of the species, and 3) forecast the species' future condition. The future condition refers to the ability of a species to sustain populations in the wild under plausible future scenarios. The scenarios help explore the species' response to future environmental stressors and to assess the potential for conservation to intervene to improve its status. The SSA process incorporates modeling and scenario planning for prediction of extinction risk and applies the conservation biology principles of representation, resiliency, and redundancy to evaluate the current and future condition. The SSA results in a scientific report distinct from policy application, which contributes to streamlined, transparent, and consistent decision-making and allows for greater technical participation by experts outside of the USFWS, for example, by state natural resource agencies. We present two case studies based on assessments of the eastern massasauga rattlesnake Sistrurus catenatus and the Sonoran Desert tortoise Gopherus morafkai to illustrate the process. The SSA builds upon the past threat-focused assessment by including systematic and explicit analyses of a species' future response to stressors and conservation, and as a result, we believe it provides an improved scientific analysis for ESA decisions.

Journal of Fish and Wildlife Management↗
USGS2005

An assessment of Idaho's wildlife management areas for the protection of wildlife

Since 1940, Idaho Department of Fish and Game has developed a network of 31 Wildlife Management Areas (WMAs) across the state. This program has been focused mostly on conservation of game species and their habitats. We assessed the contribution of Idaho's WMAs to conservation of all Idaho's wildlife and other aspects of ecological diversity. Predicted occurrences of species' breeding habitats and other data were used to evaluate the representation of wildlife habitat and other ecological conditions. We found 33 of 39 natural land cover types were mapped as occurring in WMAs. WMAs occurred in 10 of 15 of Bailey's ecoregion sections, absent only from two sections that occupy greater than 1% of Idaho. Percent area of WMAs by elevation followed a pattern similar to percent area of Idaho; however, mean elevation for WMAs was lower than for the state and other protected areas in Idaho. We predicted breeding habitat for 98.4% of Idaho's wildlife and all federal and state listed threatened, endangered, or candidate terrestrial vertebrates to occur in at least one WMA. We predicted habitat for 39 species to occur on five or fewer WMAs, and predicted no habitat on WMAs for five species. We found that a system of WMAs established mainly to protect game species potentially conserves many other aspects of Idaho's ecological diversity, may provide habitat for more than 98% of Idaho's wildlife, and complements other protected areas in the state.

Idaho↗
USGS2017

Demographic consequences of nest box use for Red-footed Falcons Falco vespertinus in Central Asia

Nest box programs are frequently implemented for the conservation of cavity-nesting birds, but their effectiveness is rarely evaluated in comparison to birds not using nest boxes. In the European Palearctic, Red-footed Falcon Falco vespertinus populations are both of high conservation concern and are strongly associated with nest box programs in heavily managed landscapes. We used a 21-year monitoring dataset collected on 753 nesting attempts by Red-footed Falcons in unmanaged natural or semi-natural habitats to provide basic information on this poorly known species; to evaluate long-term demographic trends; and to evaluate response of demographic parameters of Red-footed Falcons to environmental factors including use of nest boxes. We observed significant differences among years in laying date, offspring loss, and numbers of fledglings produced, but not in egg production. Of these four parameters, offspring loss and, to a lesser extent, number of fledglings exhibited directional trends over time. Variation in laying date and in numbers of eggs were not well explained by any one model, but instead by combinations of models, each with informative terms for nest type. Nevertheless, laying in nest boxes occurred 2.10 ± 0.70 days earlier than in natural nests. In contrast, variation in both offspring loss and numbers of fledglings produced were fairly well explained by a single model including terms for nest type, nest location, and an interaction between the two parameters (65% and 81% model weights respectively), with highest offspring loss in nest boxes on forest edges. Because, for other species, earlier laying dates are associated with more fit individuals, this interaction highlighted a possible ecological trap, whereby birds using nest boxes on forest edges lay eggs earlier but suffer greater offspring loss and produce lower numbers of fledglings than do those in other nesting settings. If nest boxes increase offspring loss for Red-footed Falcons in heavily managed landscapes where populations are at greater risk, or for the many other species of rare or endangered birds supported by nest box programs, these processes could have important demographic and conservation consequences.

Ibis↗
USGS2011

Bayesian adaptive survey protocols for resource management

Transparency in resource management decisions requires a proper accounting of uncertainty at multiple stages of the decision‐making process. As information becomes available, periodic review and updating of resource management protocols reduces uncertainty and improves management decisions. One of the most basic steps to mitigating anthropogenic effects on populations is determining if a population of a species occurs in an area that will be affected by human activity. Species are rarely detected with certainty, however, and falsely declaring a species absent can cause improper conservation decisions or even extirpation of populations. We propose a method to design survey protocols for imperfectly detected species that accounts for multiple sources of uncertainty in the detection process, is capable of quantitatively incorporating expert opinion into the decision‐making process, allows periodic updates to the protocol, and permits resource managers to weigh the severity of consequences if the species is falsely declared absent. We developed our method using the giant gartersnake ( Thamnophis gigas ), a threatened species precinctive to the Central Valley of California, as a case study. Survey date was negatively related to the probability of detecting the giant gartersnake, and water temperature was positively related to the probability of detecting the giant gartersnake at a sampled location. Reporting sampling effort, timing and duration of surveys, and water temperatures would allow resource managers to evaluate the probability that the giant gartersnake occurs at sampled sites where it is not detected. This information would also allow periodic updates and quantitative evaluation of changes to the giant gartersnake survey protocol. Because it naturally allows multiple sources of information and is predicated upon the idea of updating information, Bayesian analysis is well‐suited to solving the problem of developing efficient sampling protocols for species of conservation concern.

California↗
USGS2018

Host-pathogen metapopulation dynamics suggest high elevation refugia for boreal toads

Emerging infectious diseases are an increasingly common threat to wildlife. Chytridiomycosis, caused by the fungal pathogen Batrachochytrium dendrobatidis ( Bd ), is an emerging infectious disease that has been linked to amphibian declines around the world. Few studies exist that explore amphibian- Bd dynamics at the landscape scale, limiting our ability to identify which factors are associated with variation in population susceptibility and to develop effective in situ disease management. Declines of boreal toads ( Anaxyrus boreas boreas ) in the Southern Rocky Mountains are largely attributed to chytridiomycosis but variation exists in local extinction of boreal toads across this metapopulation. Using a large-scale historic dataset, we explored several potential factors influencing disease dynamics in the boreal toad- Bd system: geographic isolation of populations, amphibian community richness, elevational differences, and habitat permanence. We found evidence that boreal toad extinction risk was lowest at high elevations where temperatures may be sub-optimal for Bd growth and where small boreal toad populations may be below the threshold needed for efficient pathogen transmission. In addition, boreal toads were more likely to recolonize high elevation sites after local extinction, again suggesting that high elevations may provide refuge from disease for boreal toads. We illustrate a modeling framework that will be useful to natural resource managers striving to make decisions in amphibian- Bd systems. Our data suggest that in the southern Rocky Mountains high elevation sites should be prioritized for conservation initiatives like reintroductions.

Ecological Applications↗
USGS2017

The evolution of different maternal investment strategies in two closely related desert vertebrates

We compared egg size phenotypes and tested several predictions from the optimal egg size (OES) and bet-hedging theories in two North American desert-dwelling sister tortoise taxa, Gopherus agassizii and G. morafkai , that inhabit different climate spaces: relatively unpredictable and more predictable climate spaces, respectively. Observed patterns in both species differed from the predictions of OES in several ways. Mean egg size increased with maternal body size in both species. Mean egg size was inversely related to clutch order in G. agassizii , a strategy more consistent with the within-generation hypothesis arising out of bet-hedging theory or a constraint in egg investment due to resource availability, and contrary to theories of density dependence, which posit that increasing hatchling competition from later season clutches should drive selection for larger eggs. We provide empirical evidence that one species, G. agassizii , employs a bet-hedging strategy that is a combination of two different bet-hedging hypotheses. Additionally, we found some evidence for G. morafkai employing a conservative bet-hedging strategy. (e.g., lack of intra- and interclutch variation in egg size relative to body size). Our novel adaptive hypothesis suggests the possibility that natural selection favors smaller offspring in late-season clutches because they experience a more benign environment or less energetically challenging environmental conditions (i.e., winter) than early clutch progeny, that emerge under harsher and more energetically challenging environmental conditions (i.e., summer). We also discuss alternative hypotheses of sexually antagonistic selection, which arise from the trade-offs of son versus daughter production that might have different optima depending on clutch order and variation in temperature-dependent sex determination (TSD) among clutches. Resolution of these hypotheses will require long-term data on fitness of sons versus daughters as a function of incubation environment, data as yet unavailable for any species with TSD.

Arizona, California↗
USGS1970

Effects of oil development in Arctic America

Large and important discoveries of petroleum were made in northern Alaska in 1968 . The reserves were estimated then to be perhaps as much as ten thousand million barrels. Subsequent exploration has shown the resources to be much greater than was estimated earlier. Many problems must be solved before petroleum from northern Alaska reaches the world's markets. These problems are of three types: 1 , those related to exploring, developing, and operating under the physical environments of the region; 2 , those having to do with people—both the native people and those brought in from lower latitudes—and 3 , those concerning the protection of the natural environments. The problems are great, but so also are the reserves of petroleum. To the extent that the problems are not solved, the cost of development and operation will be higher, the use of people will be expensive and unsatisfactory, and the natural environments will be threatened. The whole effort could be jeopardized on those grounds.

Biological Conservation↗
USGS2020

How to identify win–win interventions that benefit human health and conservation

To reach the Sustainable Development Goals, we may need to act on synergies between some targets while mediating trade-offs between other targets. But what, exactly, are synergies and trade-offs, and how are they related to other outcomes, such as ‘win–win’ solutions? Finding limited guidance in the existing literature, we developed an operational method for distinguishing win–wins from eight other possible dual outcomes (lose–lose, lose–neutral and so on). Using examples related to human health and conservation, we illustrate how interdisciplinary problem-solvers can use this framework to assess relationships among targets and compare multi-target interventions that affect people and nature.

Nature Sustainability↗
USGS2018

Relationships between landscape constraints and a crayfish assemblage with consideration of competitor presence

Aim Crayfish are globally diverse and one of the most important taxa in North American streams. Despite their importance, many species are of conservation concern and efforts to improve conditions are limited. Here, we address two major impediments to improving conditions: (a) our lack of knowledge of the interplay among natural landscape and human-induced changes; and (b) a very limited understanding of how species interactions affect overall crayfish distributions. Location Ozark Highlands ecoregion, USA. Methods We used both existing data and field-collected data to examine the relationships between 12 Faxonius species and physicochemical variables at multiple spatial scales. Data were analysed using a generalized linear mixed model. After fitting our environmental variables, we also considered possible relationships between species considered strong competitors and species occurrence. Results Our results indicated that elevation, lithology, an interaction between drainage area and anthropogenic disturbance, and the presence of strong competitors were associated with Faxonius occurrences. Faxonius occurrences were associated with assemblage-structuring variables: lithology and elevation. More interestingly, we found several patterns of interactions between drainage area and disturbance. The most common pattern among several species was a decline in occurrence in larger drainages when disturbance was high; however, longpincered crayfish ( Faxonius longidigitus ) was more likely to occupy large drainages as disturbance increased. Additionally, the presence of species considered strong competitors resulted in lower occurrence probability for many species, including two of the species classified as competitors. Main conclusions In addition to identifying the relationships between native species and assemblage-structuring variables, we show how the probability of species occurrences relate to interactions between disturbance and natural landscape features. Further, our results suggest competitor presence also plays a role in structuring distributions at the stream segment scale. Our findings emphasize the value of considering both competitor presence and interactions among landscape variables and disturbances in structuring crayfish assemblages.

Arkansas, Missouri↗
USGS2021

Optimization of a suite of flathead catfish (Pylodictis olivaris) microsatellite markers for understanding the population genetics of introduced populations in the northeast United States

Flathead catfish are rapidly expanding into nonnative waterways throughout the United States. Once established, flathead catfish may cause disruptions to the local ecosystem through consumption and competition with native fishes, including species of conservation concern. Flathead catfish often become a popular sport fish in their introduced range, and so management strategies must frequently balance the need to protect native and naturalized fauna while meeting the desire to maintain or enhance fisheries. However, there are currently few tools available to inform management of invasive flathead catfish ( Pylodictis olivaris ). We describe a suite of microsatellite loci that can be used to characterize population structure, predict invasion history, and assess potential mitigation strategies for flathead catfish.

Pennsylvania↗
USGS2018

Ecosystems science: Genes to landscapes

Bountiful fisheries, healthy and resilient wildlife, flourishing forests and vibrant grasslands are coveted resources that benefit all Americans. U.S. Geological Survey (USGS) science supports the conservation and management of the Nation’s fish and wildlife, and the landscapes they inhabit. Our biological resources—ecosystems and the wild things that live in them—are the foundation of our conservation heritage and an economic asset to current and future generations of Americans. The USGS Ecosystems Mission Area, the biological research arm of the Department of the Interior (DOI), provides science to help America achieve sustainable management and conservation of its biological resources. This work is done within the broader mission of the USGS—to serve the Nation with science that advances understanding of our natural resources, informs land and water stewardship, and helps safeguard communities from natural and environmental hazards. The Ecosystems Mission Area provides research, technical assistance, and education conducted by Cooperative Research Units and Science Centers located in nearly every State. The quality of life and economic strength in America hinges on healthy ecosystems that support living things and natural processes. Ecosystem science better enables society to understand how and why ecosystems change and to guide actions that can prevent damage to, and restore and sustain ecosystems. It is through this knowledge that informed decisions are made about natural resources that can enhance our Nation’s economic and environmental well-being.

Fact Sheet↗
USGS2013

Hydrogeology of the West Branch Delaware River basin, Delaware County, New York

In 2009, the U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, began a study of the hydrogeology of the West Branch Delaware River (Cannonsville Reservoir) watershed. There has been recent interest by energy companies in developing the natural gas reserves that are trapped within the Marcellus Shale, which is part of the Hamilton Group of Devonian age that underlies all the West Branch Delaware River Basin. Knowing the extent and thickness of stratified-drift (sand and gravel) aquifers within this basin can help State and Federal regulatory agencies evaluate any effects on these aquifers that gas-well drilling might produce. This report describes the hydrogeology of the 455-square-mile basin in the southwestern Catskill Mountain region of southeastern New York and includes a detailed surficial geologic map of the basin. Analysis of surficial geologic data indicates that the most widespread surficial geologic unit within the basin is till, which is present as deposits of ablation till in major stream valleys and as thick deposits of lodgment till that fill upland basins. Till and colluvium (remobilized till) cover about 89 percent of the West Branch Delaware River Basin, whereas stratified drift (outwash and ice-contact deposits) and alluvium account for 8.9 percent. The Cannonsville Reservoir occupies about 1.9 percent of the basin area. Large areas of outwash and ice-contact deposits occupy the West Branch Delaware River valley along its entire length. These deposits form a stratified-drift aquifer that ranges in thickness from 40 to 50 feet (ft) in the upper West Branch Delaware River valley, from 70 to 140 ft in the middle West Branch Delaware River valley, and from 60 to 70 ft in the lower West Branch Delaware River valley. The gas-bearing Marcellus Shale underlies the entire West Branch Delaware River Basin and ranges in thickness from 600 to 650 ft along the northern divide of the basin to 750 ft thick along the southern divide. The depth to the top of the Marcellus Shale ranges from 3,240 ft along the northern basin divide to 4,150 ft along the southern basin divide. Yields of wells completed in the aquifer are as high as 500 gallons per minute (gal/min). Springs from fractured sandstone bedrock are an important source of domestic and small municipal water supplies in the West Branch Delaware River Basin and elsewhere in Delaware County. The average yield of 178 springs in Delaware County is 8.5 gal/min with a median yield of 3 gal/min. An analysis of two low-flow statistics indicates that groundwater contributions from fractured bedrock compose a significant part of the base flow of the West Branch Delaware River and its tributaries.

New York↗
USGS1971

Annual compilation and analysis of hydrologic data for Pin Oak Creek, Trinity River basin, Texas, 1969

The U.S. Soil Conservation Service is actively engaged in the installation of flood and soil erosion reducing measures in Texas under the authority of "The Flood Control Act of 1936 and 1944" and "Watershed Protection and Flood Prevention Act" (Public Law 566), as amended. The Soil Conservation Service has found a total of approximately 3,500 floodwater-retarding structures to be physically and economically feasible in Texas. As of September 30, 1969, 1,355 of these structures had been built. This watershed-development program will have varying but important effects on the natural surface- and ground-water resources of river basins, especially where a large number of the floodwater-retarding structures are built. Basic hydrologic data under natural and developed conditions are needed to appraise the effects of the structures on the yield and mode of occurrence of runoff. Hydrologic investigations of these small watersheds were begun by the U.S. Geological Survey in 1951 and are now being made in 12 areas (fig. 1). These studies are being made in cooperation with the Texas Water Development Board, the Soil Conservation Service, the San Antonio River Authority, the city of Dallas, and the Tarrant County Water Control and Improvement District No. 1. The 12 study areas were chosen to sample watersheds having different rainfall, topography, geology, and soils. In five of the study areas (North, Little Elm, Mukewater, North Elm-Little Pond, and Pin Oak Creeks), streamflow and rainfall records were collected prior to construction of the floodwater-retarding structures, thus affording the opportunity for analyses of the conditions "before and after" development. Structures have now been built in three of these study areas. A summary of the development of the floodwater-retarding structures on each study area as of September 30, 1969, is shown in table 1.

Texas↗
USGS2004

Anthropogenic and natural variation in ridge and slough pollen assemblages

We present pollen evidence documenting the response of sawgrass ridge and slough systems of the Florida Everglades to hydrologic changes during the last 3,500 years. Sediment cores and surface samples were collected in three transects across sawgrass ridges and sloughs in Water Conservation Area 3A to determine the age of the features, long-term variability in plant community composition, stability of sawgrass ridge and slough size, and their response to 20th century changes in hydrology. Statistically significant differences in abundance of Cladium pollen in surface samples collected throughout the system allow differentiation of these communities in the sedimentary pollen record. Analysis of pollen in cores from the three transects indicates that the general distribution of ridges and sloughs has remained distinct through time. There is evidence the vegetation has responded to past global-scale climate events, such as the Medieval Warm Period, as well as the 20th century anthropogenic alterations to the natural hydrology. The ridge community is more responsive and susceptible to perturbations in hydrology than the slough community. In contrast, the slough plant community is more stable and less likely to demonstrate long-term changes after perturbations to hydrology. Regardless, these data indicate that the ridge and slough landscape is resilient to changes in hydrology and posses the potential to return to a natural state with the return of natural hydrologic conditions.

Florida↗
USGS2003

Review of techniques to prevent introduction of zebra mussels (Dreissena polymorpha) during native mussel (Unionoidea) conservation activities

Because of the declines in diversity and abundance of native freshwater mussels (superfamily Unionoidea), and the potential decimation of populations of native mussels resulting from the rapid spread of the exotic zebra mussel Dreissena polymorpha, management options to eliminate or reduce the threat of the zebra mussel are needed. Relocating native mussels to refugia (artificial and natural) has been proposed to mitigate the threat of zebra mussels to native species. Relocation of native mussels to refugia such as fish hatchery facilities or natural habitats within their historic range. Which are unlikely to be infested by zebra mussels, necessitates that protocols be developed to prevent the inadvertent introduction of zebra mussels. Several recent studies have developed Such protocols, and have assessed their effectiveness on the health and survival of native mussels during subsequent relocation to various refugia. The purpose of this project is to synthesize and evaluate the current protocols and to develop a set of procedures that resource managers and researchers should consider before conducting conservation activities in zebra mussel infested waters. We found that the existing protocols have many common points of concern, such as facility modification and suitability, zebra mussel risk assessment and management procedures, and health and disease management procedures. These conservation protocols may have broad applicability to other situations and locations. A summary and evaluation of the information in these main areas, along with recommended guidelines, are presented in this article.

Journal of Shellfish Research↗
USGS1967

Compilation of hydrologic data Green Creek, Brazos River basin, Texas, 1967

The U.S. Soil Conservation Service is actively engaged in the installation of flood and soil erosion reducing measures in Texas under the authority of "The Flood Control Act of 1936 and 1944" and "Watershed Protection and Flood Prevention Act" (Public Law 566), as amended. The Soil Conservation Service has found a total of 3,438 floodwater-retarding structures to be physically and economically feasible in Texas. As of September 30, 1967, 1,196 of these structures had been built. This watershed-development program will have varying but important effects on the natural surface- and ground-water resources of river basins, especially where a large number of the floodwater-retarding structures are built. Basic hydrologic data under natural and developed conditions are needed to appraise the effects of the structures on the yield and mode of occurrence of runoff. Hydrologic investigations of these small watersheds, both developed and undeveloped, were begun by the Geological Survey in 1951 and are now being made in 11 areas (fig. 1). These studies are being made in cooperation with the Texas Water Development Board, the Soil Conservation Service, the San Antonio River Authority, the city of Dallas and the Tarrant County Water Control and Improvement District No. 1. The 11 study areas were chosen to sample watersheds having different rainfall, topography, geology, and soils. In four of the study areas (North, Little Elm, Mukewater, and Pin Oak Creeks), streamflow and rainfall records were collected prior to construction of the floodwater-retarding structures, thus affording the opportunity for analyses of the conditions "before and after" development. Structures have now been built in three of these study areas. A summary of the development of the floodwater-retarding structures in each study area as of September 30, 1967, is shown in table 1.

Texas↗
USGS2011

Projected evolution of California's San Francisco Bay-Delta-River System in a century of continuing climate change

Background Accumulating evidence shows that the planet is warming as a response to human emissions of greenhouse gases. Strategies of adaptation to climate change will require quantitative projections of how altered regional patterns of temperature, precipitation and sea level could cascade to provoke local impacts such as modified water supplies, increasing risks of coastal flooding, and growing challenges to sustainability of native species. Methodology/Principal Findings We linked a series of models to investigate responses of California's San Francisco Estuary-Watershed (SFEW) system to two contrasting scenarios of climate change. Model outputs for scenarios of fast and moderate warming are presented as 2010–2099 projections of nine indicators of changing climate, hydrology and habitat quality. Trends of these indicators measure rates of: increasing air and water temperatures, salinity and sea level; decreasing precipitation, runoff, snowmelt contribution to runoff, and suspended sediment concentrations; and increasing frequency of extreme environmental conditions such as water temperatures and sea level beyond the ranges of historical observations. Conclusions/Significance Most of these environmental indicators change substantially over the 21 st century, and many would present challenges to natural and managed systems. Adaptations to these changes will require flexible planning to cope with growing risks to humans and the challenges of meeting demands for fresh water and sustaining native biota. Programs of ecosystem rehabilitation and biodiversity conservation in coastal landscapes will be most likely to meet their objectives if they are designed from considerations that include: (1) an integrated perspective that river-estuary systems are influenced by effects of climate change operating on both watersheds and oceans; (2) varying sensitivity among environmental indicators to the uncertainty of future climates; (3) inevitability of biological community changes as responses to cumulative effects of climate change and other drivers of habitat transformations; and (4) anticipation and adaptation to the growing probability of ecosystem regime shifts.

California↗