Geology Reports⌕ Search

SEARCH · Geology Reports

Results for “Fish and Fisheries”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,225 records · Page 68Linked to original sources
USGS2018

Reexamining the frequency range of hearing in silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp

Silver ( Hypophthalmichthys molitrix ) and bighead ( H . nobilis ) carp (collectively bigheaded carp) are invasive fish that threaten aquatic ecosystems in the upper Midwest United States and the Laurentian Great Lakes. Controlling bigheaded carp is a priority of fisheries managers and one area of focus involves developing acoustic deterrents to prevent upstream migration. For an acoustic deterrent to be effective however, the hearing ability of bigheaded carp must be characterized. A previous study showed that bigheaded carp detected sound up to 3 kHz but this range is narrower than what has been reported for other ostariophysans. Therefore, silver and bighead carp frequency detection was evaluated in response to 100 Hz to 9 kHz using auditory evoked potentials (AEPs). AEPs were recorded from 100 Hz to 5 kHz. The lowest thresholds were at 500 Hz for both species (silver carp threshold: 80.6 ± 3.29 dB re 1 μPa SPL rms , bighead carp threshold: 90.5 ± 5.75 dB re 1 μPa SPL rms ; mean ± SD). These results provide fisheries managers with better insight on effective acoustic stimuli for deterrent systems, however, to fully determine bigheaded carp hearing abilities, these results need to be compared with behavioral assessments.

PLoS ONE↗
USGS2018

Model structure of the stream salmonid simulator (S3)—A dynamic model for simulating growth, movement, and survival of juvenile salmonids

Fisheries and water managers often use population models to aid in understanding the effect of alternative water management or restoration actions on anadromous fish populations. We developed the Stream Salmonid Simulator (S3) to help resource managers evaluate the effect of management alternatives on juvenile salmonid populations. S3 is a deterministic stage-structured population model that tracks daily growth, movement, and survival of juvenile salmon. A key theme of the model is that river flow affects habitat availability and capacity, which in turn drives density dependent population dynamics. To explicitly link population dynamics to habitat quality and quantity, the river environment is constructed as a one-dimensional series of linked habitat units, each of which has an associated daily time series of discharge, water temperature, and usable habitat area or carrying capacity. The physical characteristics of each habitat unit and the number of fish occupying each unit, in turn, drive survival and growth within each habitat unit and movement of fish among habitat units. The purpose of this report is to outline the underlying general structure of the S3 model that is common among different applications of the model. We have developed applications of the S3 model for juvenile fall Chinook salmon ( Oncorhynchus tshawytscha ) in the lower Klamath River. Thus, this report is a companion to current application of the S3 model to the Trinity River (in review). The general S3 model structure provides a biological and physical framework for the salmonid freshwater life cycle. This framework captures important demographics of juvenile salmonids aimed at translating management alternatives into simulated population responses. Although the S3 model is built on this common framework, the model has been constructed to allow much flexibility in application of the model to specific river systems. The ability for practitioners to include system-specific information for the physical stream structure, survival, growth, and movement processes ensures that simulations provide results that are relevant to the questions asked about the population under study.

Open-File Report↗
USGS2008

Improvements in the use of aquatic herbicides and establishment of future research directions

Peer-reviewed literature over the past 20 years identifies significant changes and improvements in chemical control strategies used to manage nuisance submersed vegetation. The invasive exotic plants hydrilla (Hydrilla verticillata L.f. Royle) and Eurasian watermilfoil (Myriophyllum spicatum L.) continue to spread and remain the plant species of greatest concern for aquatic resource managers at the national scale. Emerging exotic weeds of regional concern such as egeria (Egeria densa Planch.), curlyleaf pondweed (Potamogeton crispus L.), and hygrophila (Hygrophila polysperma (Roxb.) T. Anders), as well as native plants such as variable watermilfoil (Myriophyllum heterophyllum Michx), and cabomba (Cabomba caroliniana Gray) are invasive outside their home ranges. In addition, there is always the threat of new plant introductions such as African elodea (Lagarosiphon major (Ridley) Moss) or narrow-leaf anacharis (Egeria najas Planchon). The registration of the bleaching herbicide fluridone in the mid 1980s for whole-lake and large-scale management stimulated numerous lines of research involving reduction of use rates, plant selectivity, residue monitoring, and impacts on fisheries. In addition to numerous advances, the specificity of fluridone for a single plant enzyme led to the first documented case of herbicide resistance in aquatic plant management. The resistance of hydrilla to fluridone has stimulated a renewed interest by industry and others in the registration of alternative modes of action for aquatic use. These newer chemistries tend to be enzyme-specific compounds with favorable non-target toxicity profiles. Registration efforts have been facilitated by increased cooperation between key federal government agencies that have aquatic weed control and research responsibilities, and regulators within the U.S. Environmental Protection Agency (USEPA). We reviewed past and current research efforts to identify areas in need of further investigation and to establish priorities for future research directions in chemical management of submersed plants. The priorities we identified include: (A) improving methods for evaluating non-target impacts of herbicides with an emphasis on threatened and endangered species, or species of special concern; (B) improving herbicide performance in flowing-water environments, including irrigation canals; (C) screening and developing new herbicides to supplement fluridone for large-scale or whole-lake management approaches; (D) screening and developing new organic algaecides to supplement the use of copper-based compounds; (E) developing risk assessment tools to educate the public on the risks of invasive species and chemical management options; (F) increasing cooperative research with ecologists and fisheries scientists to evaluate the long-term impacts of invasive species introductions and herbicide programs on native plant assemblages, water quality, and fish populations; and (G) improving the integration of chemical control technology with other aquatic plant management disciplines. While circumstances may dictate setting new priorities or dropping current ones, the list we have generated represents our vision of the needs that will require the greatest focus over the next several years.

Conference Paper↗
USGS2013

Predicting paddlefish roe yields using an extension of the Beverton–Holt equilibrium yield-per-recruit model

Equilibrium yield models predict the total biomass removed from an exploited stock; however, traditional yield models must be modified to simulate roe yields because a linear relationship between age (or length) and mature ovary weight does not typically exist. We extended the traditional Beverton-Holt equilibrium yield model to predict roe yields of Paddlefish Polyodon spathula in Kentucky Lake, Tennessee-Kentucky, as a function of varying conditional fishing mortality rates (10-70%), conditional natural mortality rates (cm; 9% and 18%), and four minimum size limits ranging from 864 to 1,016mm eye-to-fork length. These results were then compared to a biomass-based yield assessment. Analysis of roe yields indicated the potential for growth overfishing at lower exploitation rates and smaller minimum length limits than were suggested by the biomass-based assessment. Patterns of biomass and roe yields in relation to exploitation rates were similar regardless of the simulated value of cm, thus indicating that the results were insensitive to changes in cm. Our results also suggested that higher minimum length limits would increase roe yield and reduce the potential for growth overfishing and recruitment overfishing at the simulated cm values. Biomass-based equilibrium yield assessments are commonly used to assess the effects of harvest on other caviar-based fisheries; however, our analysis demonstrates that such assessments likely underestimate the probability and severity of growth overfishing when roe is targeted. Therefore, equilibrium roe yield-per-recruit models should also be considered to guide the management process for caviar-producing fish species.

North American Journal of Fisheries Management↗
USGS2024

Economic losses to inland recreational fisheries from harmful algal blooms

This paper presents research on the recreational impacts of harmful algal blooms (HABs) and other water quality changes in the U.S. heartland. We examine the link between recreational fishing and water quality using a random utility model of reservoir choices, and data on effort and health-based advisories for reservoirs in Nebraska. We find that advisories linked specifically to algal blooms affect the demand for and value of fishing, and that these effects are heterogeneous. The estimated welfare loss at HAB-afflicted reservoirs is approximately $12 per trip, with larger losses experienced by gamefish-oriented and college-educated fishers.

Journal of Environmental Management↗
USGS1967

Fishery picture changing in Lake Erie: pollution a major factor, survey shows

The objectives of these cruises of the research vessel Musky II in 1965 and 1966 were: To determine changes in the fish population and environmental conditions in recent years; to determine if the geographic and depth distributions of certain species of fish in the summer differed from that in the autumn; and, to obtain much-needed information on the selectivity of experimental gill nets, particularly for the fresh-water drum (sheepshead) and the walleye. In general, the kinds of fishes, and the geographic and depth distribution of the catches in the eastern basin in June, 1966 did not differ greatly from those in September of the preceding year. The numbers of some fishes, however, had changed- the so-called trash fish were more abundant and the more desirable commercial species were less numerous than in 1965. Yellow perch was by far the most abundant species in the catches. Other fishes taken frequently included white suckers, stonecats, white bass, smelt, and walleyes. Sizeable populations of small-mouth bass and fresh-water drum were also found.

Conservationist↗
USGS2000

Observations of health indices used to monitor a tailwater trout fishery

Health of the population of rainbow trout Oncorhynchus mykiss in the San Juan River tailwater was monitored to determine the effects of potential crowding from a reduced winter flow test at Navajo Dam, northwestern New Mexico. A systematic necropsy-based health profile provided a rapid method to detect gross changes in the health of the fish population. The health assessment index (HAI) was calculated to quantify the necropsy system and allow statistical comparisons of data sets. Other suborganismic indices were selected to encompass a range of responses specific to the stress of environmental alterations: physiology assessment using total protein and percent muscle lipids, an immune assessment using serum lysozyme, and a cellular-based evaluation using histology. The HAI values showed no clear trend in fish health, although significant differences occurred among fish samples during the test. Significant declines in condition factors and percent muscle lipids throughout the study suggested a seasonal effect. Total protein and lysozyme levels were variable, showing no discernible patterns. Most histological observations appeared to be incidental during the study. Although there was no clear demonstrable effect of altered flow on fish health, this study revealed the sensitivities of various health indicators, which may help in designing future studies and supporting or interpreting results using these approaches.

New Mexico↗
USGS2000

Cruise report RV Ocean Surveyor cruise O-1-00-GM the bathymetry and acoustic backscatter of the Pinnacles area, northern Gulf of Mexico May 23, through June 10, 2000 Venice, LA to Venice, LA

An extensive deep (~100 m) reef tract occurs on the Mississippi-Alabama outer continental shelf (OCS). The tract, known as "The Pinnacles", is apparently part of a sequence of drowned reef complexes along the "40-fathom" shelf edge of the northern Gulf of Mexico (Ludwick and Walton, 1957). It is critical to determine the accurate geomorphology of deep-reefs because of their importance as benthic habitats for fisheries. The Pinnacles were mapped by Ludwick and Walton (1957) using a single-beam echo sounder but the spatial extent and morphology were interpreted from a series of widely separated, poorly navigated bathymetric profiles. Other recent studies, supported by Minerals Management Service (MMS), used towed sidescan sonars and single-channel seismic-reflection profiling. None of the existing studies provide the quality of geomorphic data necessary for reasonable habitat studies. The fish faunas of shallow hermatypic reefs have been well studied, but those of deep ahermatypic reefs have relatively ignored. The ecology of deep ahermatypic reefs is fundamentally different from hermatipic reefs because autochthonous intracellular symbiotic zooxanthellae (the carbon source for hermatypic corals) do not form the base of the trophic web. Instead, exogenous plankton, transported to the reef by currents, serves as the primary carbon source. Deep OCS reefs also lie below the practical working depths for SCUBA; consequently, remote investigations from a ship or in situ investigations using submersibles or ROVs are required. Community structure and trophodynamics of demersal fishes of the Pinnacles are presently the focus of USGS reseach. A goal of the research is to answer questions concerning the relataive roles played by geomorphology and surficial geology in the interaction with and control of biological differentiation. OCS reefs are important because we now know that such areas are important coral reef fish havens, key spawning 2 sites, and a critical early larval and juvenile habitats for economically important sport/food fishes. Also, deep-reef ecosystems as well as the fish populations they sustain are impacted by intensive oil-field development. It is now known that deep OCS reefs function as a key source of re-population (via seasonal and ontogenetic migration) of already heavily impacted inshore reefs. A reflection of this realization is the recent closure by the Gulf States Fisheries Management Council of a 600 mi 2 area of the Florida Middle Grounds (another unmapped major "40-fathom" OCS reef complex) to commercial fishing to preserve grouper spawning aggregations. It is known that the Pinnacles reefs support a lush fauna of ahermatypic hard corals, soft corals, black corals, sessile crinoids and sponges—together forming a living habitat for a well-developed fish fauna. The fish fauna comprises typical Caribbean reef fishes and Carolinian shelf fishes, plus epipelagic fishes, and a few deep-sea fishes. The base of the megafaunal invertebrate food web is plankton, borne by essentially continuous semi-laminar currents flowing predominantly out of the SW, up, along and across the shelf edge. These currents are intercepted by pinnacles reefs, which lie roughly in two linear tracts, parallel to the coastline (see fig. 1 in report). USGS research initiated in 1997 (Sulak et al., in progress) has demonstrated that the Pinnacles reef fish fauna is dominated by planktivorous fishes. Ongoing food habits, trophic web and stable isotope analyses by the USGS are reinforcing a basic picture of deep OCS reefs as ecosystems based on exogenous current-borne plankton. Long-term current meter deployments have demonstrated that the >3 m, <16m relief of the Pinnacles reefs disrupts the prevailing currents, inducing local complexity (F. Kelly, Texas A&M Univ., pers. comm.) favorable to plankton and planktivores. Geodetically accurate bathymetry maps, coregistered with calibrated acoustic backscatter maps, are critical to delineate benthic biotopes, and are essential to correlate biological community differentiation with the physical environment. Previous mapping of the Pinnacles area using the TAMU towed single-beam sidescan system (Anonymous., 1999) employed technology with inherent deficiencies in backscatter calibration, bathymetric precision, and geo-referencing. The resulting bathymetric interpretations of TAMU data are further degraded by ship-track-parallel artifacts that obliterate geomorphology rendering them inadequate to provide high-resolution mapping of individual target reefs (typical maximum relief 15 m, diameter 200-500 m). The sidescan-sonar surveys of the area (Laswell et al., 1990) suffer many of the same deficiencies as the TAMU data so they add no quantitative and little qualitative information about the geomorphology and surficial geology.

Gulf of Mexico, the Pinnacles area↗
USGS2015

Assessment of interim flow water-quality data of the San Joaquin River restoration program and implications for fishes, California, 2009-11

After more than 50 years of extensive water diversion for urban and agriculture use, a major settlement was reached among the U.S. Departments of the Interior and Commerce, the Natural Resources Defense Council, and the Friant Water Users Authority in an effort to restore the San Joaquin River. The settlement received Federal court approval in October 2006 and established the San Joaquin River Restoration Program, a multi-agency collaboration between State and Federal agencies to restore and maintain fish populations, including Chinook salmon, in the main stem of the river between Friant Dam and the confluence with the Merced River. This is to be done while avoiding or minimizing adverse water supply effects to all of the Friant Division contractors that could result from restoration flows required by the settlement. The settlement stipulates that water- and sediment-quality data be collected to help assess the restoration goals. This report summarizes and evaluates water-quality data collected in the main stem of the San Joaquin River between Friant Dam and the Merced River by the U.S. Bureau of Reclamation for the San Joaquin River Restoration Program during 2009-11. This summary and assessment consider sampling frequency for adequate characterization of variability, sampling locations for sufficient characterization of the San Joaquin River Restoration Program restoration reach, sampling methods for appropriate media (water and sediment), and constituent reporting limits. After reviewing the water- and sediment-quality results for the San Joaquin River Restoration Program, several suggestions were made to the Fisheries Management Work Group, a division of the San Joaquin River Restoration Program that focuses solely on the reintroduction strategies and health of salmon and other native fishes in the river. Water-quality results for lead and total organic carbon exceeded the Surface Water Ambient Monitoring Program Basin Plan Objectives for the San Joaquin Basin, and results for copper exceeded the U.S. Environmental Protection Agency Office of Pesticide Programs' aquatic-life chronic and acute benchmarks for invertebrates. One sediment sample contained detections of pyrethroid pesticides bifenthrin, lambda-cyhalothrin, and total permethrin at concentrations above published chronic toxicity thresholds.

California↗
USGS2026

Spatial and temporal trends of mercury in fish from Duck Valley Reservation Reservoirs, southwestern Idaho and northern Nevada, 2007–24

The Shoshone-Paiute (Sho-Pai) Tribes of the Duck Valley Reservation, Nevada, manage reservoirs that support commercial and recreational activities, including robust Oncorhynchus mykiss (rainbow trout) fisheries that attract anglers year-round. Reservoirs are common environments for methylation and bioaccumulation of mercury, which is a potent neurotoxin when elevated levels are consumed. The U.S. Geological Survey (USGS), in cooperation with the Sho-Pai Tribes, measured total mercury concentrations in the muscle tissue of rainbow trout from three Reservation reservoirs in Idaho and Nevada in 2007, 2009, 2013, and 2024. This report highlights spatial and temporal trends of mercury concentrations in rainbow trout in the Duck Valley Reservation reservoirs from 2007 through 2024, and presents limited data on other commonly consumed species, specifically Perca flavescens (yellow perch), Micropterus dolomieu (smallmouth bass), and Micropterus salmoides (largemouth bass). Mercury data are also presented for nearby sites and lower trophic level species. In 2024, two fish sampling methods were used and compared: biopsy muscle plugs and muscle fillets. Results show good agreement between mercury concentrations of biopsy and fillet muscle samples taken from the same fish, with most sample pairs differing by less than 20 percent, though biopsied fish had an unexpectedly high mortality rate. Mercury concentrations increased in Sheep Creek Reservoir during the study period, but no significant trend was observed in Mountain View Reservoir or Lake Billy Shaw. Only 1 rainbow trout out of 160 sampled in the Reservation reservoirs during the study period exceeded the U.S. Environmental Protection Agency’s recommended methylmercury criterion of 0.3 milligram per kilogram of wet weight (mg/kg ww). Largemouth bass, smallmouth bass, and yellow perch had higher mercury concentrations than rainbow trout and may pose a greater risk to consumers. Mercury concentrations in largemouth bass exceeded 0.3 mg/kg ww, although only two fish were sampled, both from Sheep Creek Reservoir. Fish consumption advisories on Tribal lands are determined by the Tribes, and these results may help Sho-Pai managers determine the mercury exposure risk to Tribal members and visiting anglers.

Idaho, Nevada↗
USGS2012

Competing risks and the development of adaptive management plans for water resources: Field reconnaissance investigation of risks to fishes and other aquatic biota exposed to endocrine disrupting chemicals (edcs) in lake mead, Nevada USA

The analysis and characterization of competing risks for water resources rely on a wide spectrum of tools to evaluate hazards and risks associated with their management. For example, waters of the lower Colorado River stored in reservoirs such as Lake Mead present a wide range of competing risks related to water quantity and water quality. These risks are often interdependent and complicated by competing uses of source waters for sustaining biological resources and for supporting a range of agricultural, municipal, recreational, and industrial uses. USGS is currently conducting a series of interdisciplinary case-studies on water quality of Lake Mead and its source waters. In this case-study we examine selected constituents potentially entering the Lake Mead system, particularly endocrine disrupting chemicals (EDCs). Worldwide, a number of environmental EDCs have been identified that affect reproduction, development, and adaptive behaviors in a wide range of organisms. Many EDCs are minimally affected by current treatment technologies and occur in treated sewage effluents. Several EDCs have been detected in Lake Mead, and several substances have been identified that are of concern because of potential impacts to the aquatic biota, including the sport fishery of Lake Mead and endangered razorback suckers (Xyrauchen texanus) that occur in the Colorado River system. For example, altered biomarkers relevant to reproduction and thyroid function in fishes have been observed and may be predictive of impaired metabolism and development. Few studies, however, have addressed whether such EDC-induced responses observed in the field have an ecologically significant effect on the reproductive success of fishes. To identify potential linkages between EDCs and species of management concern, the risk analysis and characterization in this reconnaissance study focused on effects (and attendant uncertainties) that might be expressed by exposed populations. In addition, risk reduction measures that may be of interest to resource managers are considered relative to emerging contaminants in treated effluents, interdependencies among biological resources at risk, and uses of reservoir waters derived from multiple inflows of widely varying qualities. ??2009 ASCE.

Nevada↗
USGS2020

Evaluating catchability in a large-scale gillnet survey using hydroacoustics: Making the case for coupled surveys

Abundance estimates facilitate successful fisheries management. Fisheries agencies often monitor abundance through fishery independent standardized protocols generating relative measures such as catch-per-unit-effort (CPUE), where CPUE is assumed proportional to true abundance. Unfortunately, this assumption is rarely met as fish behavior and environmental conditions influence catchability and sample gear efficiency. We used paired gillnet and hydroacoustic samples and a catchability equation ( U i = q N i &#x3B2; "> U i =qN i β ) to assess the correspondence between gillnet CPUE ( U i "> U i ) and hydroacoustic abundance estimates ( N i "> N i ). We found that gill nets were hyperstable (i.e., β < 1) and efficiency declined along environmental gradients. These gradients, such as increased depths, and decreased turbidity and water temperatures, likely influenced fish behavior, and encounter and gear saturation rates. As a result, catchability declined with increasing abundance qacross survey regions. Finally, simulations showed that catchability gradients and variable migratory patterns can contribute to annual variation in CPUE indices regardless of changes in abundance. Surveys plagued by varying catchability could benefit from coupling with hydroacoustics, a sample gear less subject to gear efficiency and catchability issues.

Fisheries Research↗
USGS2021

Examining the potential conflict between sea otter recovery and Dungeness crab fisheries in California

Human exploitation of marine mammals led to precipitous declines in many wild populations within the last three centuries. Legal protections enacted throughout the 20th century have enabled the recovery of many of these species and some recoveries have resulted in conflict with humans for shared resources. With legal protections and reintroduction programs, the southern sea otter ( Enhydra lutris nereis ) has returned to portions of its former range from which it had been extirpated for decades, causing concern that the Dungeness crab ( Cancer magister ) fishery could be negatively affected by increasing otter range and population size. The Dungeness crab fishery is one of the most valuable in California, and these crabs are a known prey item of sea otters. We examine sea otter population growth by port region in relation to Dungeness crab catch using landing receipts since the early 1980s. We find Dungeness crab landings and fishing success, as measured by landings per trip receipt, increased across all ports. In the most recent decade, we observed slower growth in fishing success in northern ports where otters were absent, relative to southern ports where sea otters exist and their populations have grown. In ports where otters were present, fishing success was positively correlated with otter population size over time. Further, an extensive dataset of 83,000 sea otter foraging dives identified Dungeness crab to be less than 2% of the total diet. Though we find no evidence that sea otter populations impact the Dungeness crab fishery in California, other potential conflicts could be considered before expanding reintroduction programs.

California↗
USGS1957

History of Red Lakes fishery, 1917-38, with observations on population status

A historical account traces the development of the commercial fisheries of the Red Lakes, Minnesota, from its inception in 1917 as a war measure through 1938. The trends of production and catch per unit of effort were followed for the principal species with notes on statistics of the minor fishes. Life history data were recorded for the walleye and yellow perch. A historical account was presented of the artificial propagation of the walleye and whitefish from 1918 through 1938.

Special Scientific Report - Fisheries↗
USGS2023

Data-limited fishery assessment methods shed light on the exploitation history and population dynamics of Endangered Species Act-listed Yelloweye Rockfish in Puget Sound, Washington

Objective The distinct population segment (DPS) of Yelloweye Rockfish Sebastes ruberrimus inhabiting the Puget Sound/Georgia Basin was listed under the Endangered Species Act (ESA) in 2010, and a formal recovery plan for the DPS was published by National Oceanic and Atmospheric Administration Fisheries in 2017. In this recovery plan, the biological criteria for delisting or downlisting were specified as certain levels of spawning potential ratio (SPR), a commonly used metric of equilibrium stock status for commercially exploited fishes. Although this metric can be estimated from length compositions, the combination of length data with a catch history (which was not previously available for this DPS) improves our understanding of population dynamics over time and allows us to estimate a different measure of stock status, relative (to unfished) spawning stock biomass (SSB), rather than only SPR. Methods To estimate relative SSB and reconstruct the historical dynamics of this DPS, we reconstructed the catch history from fisheries records, collated length data from historical and contemporary hook-and-line surveys, and fitted a data-limited version of a statistical catch-at-age model. Result Despite a high level of uncertainty, we estimated that Yelloweye Rockfish in Puget Sound are above 25% of unfished biomass (a reference point detailed in the recovery criteria) under the assumption of deterministic recruitment, presenting the first direct estimates of Yelloweye Rockfish population status in Puget Sound. Conclusion However, as informed by recent genetic studies, the DPS boundaries of ESA-listed Yelloweye Rockfish extend from South Puget Sound to Queen Charlotte Strait in British Columbia. The Canadian portion of this population is managed separately and is currently estimated to be at 32% of unfished biomass (95% quantiles = 15%–68%). Thus, the disjunction between the biological boundaries of the population and the jurisdictional boundaries between Canada and the United States presents an additional source of uncertainty in assessing recovery that must be addressed to achieve DPS-wide recovery goals.

Washington↗
USGS2020

Effects of density reduction on age-specific growth of stream-dwelling Brown Trout

Density-dependent growth has been well documented among stream-dwelling Brown Trout Salmo trutta populations. In Spearfish Creek, South Dakota, biomass of adult Brown Trout (>200 mm) is about three times greater than that reported for similar Black Hills streams, whereas the mean length of adult fish is about 30% less. Here, we evaluate density reduction as a management tool for improving the growth rate of stream-dwelling Brown Trout. We compared age-specific growth of wild Brown Trout in stream sections receiving 50% reductions in fish abundance (removal sections) to that of fish in sections containing natural densities (control sections). Annual growth in length and weight of older Brown Trout (age > 2) was greater in removal sections compared to control sections, particularly among fish between 230 and 280 mm TL (ages 3–4). We attribute the growth response to constraints imposed by food availability and the strong feeding hierarchies, characteristic of larger (older) Brown Trout. Data collected from PIT-tagged fish that were recaptured 2 years after fish removal efforts revealed that growth responses owing to density reduction likely did not extend beyond 1 year. Nonetheless, among cohorts that showed improved growth after the first year, we found that their growth advantage was sustained into the second year. At removal sections, age-3 and older Brown Trout that experienced greater growth after 1 year were larger than fish from control sections 2 years later at age 5 and older. Identification of cohort(s) for which density-dependent growth is most pronounced could help to focus efforts on targeted reduction of specific fish sizes/ages that minimize the cost–benefit ratio of fish removal efforts.

South Dakota↗
USGS2020

Hypoxia augments edge effects of water column stratification on fish distribution

Hypoxic conditions in both freshwater and marine habitats have a significant effect on the distribution of fish in the water column, resulting in some fishes aggregating near the edges of the hypoxic zone. These aggregations may increase fish susceptibility to fishing gears, with attendant effects on stock assessment inferences. We investigated how hypoxic conditions influenced catch rates of yellow perch ( Perca flavescens ) in both fishery independent bottom trawls and stationary commercial trap nets. Specifically, we examined how the presence of hypoxia affected trap net catch rates and how hypoxia interacted with hypolimnion thickness to modify trawl catch rates. Bottom trawl catch rates were significantly higher in hypoxic conditions than in normoxic conditions, and in each of these scenarios catch rates declined as hypolimnion thickness increased. By comparison, trap net catch rates had a dome-shaped response to the duration of hypoxia with the highest catch rates occurring at intermediate levels. Increased catch rates in hypoxic conditions potentially causes yellow perch population models, which rely on both trap net and trawl indices, to overestimate abundance and could result in overfishing.

Lake Erie↗
USGS2024

Back from the brink: Estimating daily and annual abundance of natural-origin salmon smolts from 30-years of mixed-origin capture-recapture data

Evaluating the status and trends of natural-origin anadromous fish populations over time requires robust estimates of out-migrating juvenile abundance. Information on abundance is typically acquired by capturing actively migrating fish as they pass stationary monitoring platforms. Challenges to estimation include protracted migration timing, temporally varying capture probabilities and the contemporaneous presence of unmarked hatchery-origin fish. The confounding effects of unmarked hatchery fish are especially pernicious in systems hosting multiple hatchery programs with variable mark-rates among releases. Here, we address this problem for a regionally and culturally important population of Chinook salmon ( Oncorhynchus tshawytscha ) supported by a hatchery-supplementation program implemented in response to the listing of this population under the U.S. Endangered Species Act. We developed a model to estimate daily and annual abundance of naturally produced age-0 fall Chinook salmon passing Lower Granite Dam (Snake River, USA) for each of the last 30 years. We accounted for variable hatchery marking rates by integrating two related data sources: 1) release-recapture data of fish with individually identifiable tags and 2) counts of marked and unmarked sample of fish captured each day. We fit joint parameters for daily fish arrival and capture probabilities to these data to estimate the daily abundance of hatchery- and natural-origin fish. Our results show that from 1992 to 2021, the annual abundance of juvenile natural-origin Snake River fall Chinook salmon increased by two orders of magnitude. These results are the first comprehensive evaluation of multi-decadal trends in abundance and run-timing for this population. Our approach can be adapted to other runs and locations within the Columbia River basin or similar systems where out-migrating fish are monitored at fixed locations.

Idaho, Oregon, Washington↗