Review of the book Handbook of spatial point-pattern analysis in Ecology, by Thorsten Wiegand and Kirk A. Moloney
No abstract available.
Journal of Agricultural, Biological, and Environme↗
SEARCH · Geology Reports
Results for “Ecology”
Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
Bridging social and ecological science to create spatially-explicit models of human-caused mortality of carnivores
Research indicates that human-caused mortality (HCM) is a key factor limiting numerous large carnivore populations. However, efforts to represent HCM in spatially explicit models have generally been limited in scope—often relying on proxies, such as road or human density. Yet such efforts fail to distinguish different sources of HCM, which can arise from different antecedent processes. We offer a systems-based conceptual framework for understanding the antecedents of HCMs that is grounded in theory from the social and behavioral sciences. Specifically, we first explain how HCMs are usefully distinguished into four types (e.g., accidental, harvest, illicit, control actions), then discuss how these different types tend to be driven by different sets of psychological and sociopolitical processes. We contend that improvements in understanding the spatial variation in HCMs would rise from more explicit attention to the various antecedent processes that precede each mortality type.
Ambio↗
Ecology and evolution of pine life histories
Introduction - Pinus is a diverse genus of trees widely distributed throughout the Northern Hemisphere. Understanding pine life history is critical to both conservation and fire management. Objectives - Here I lay out the different pathways of pine life history adaptation and a brief overview of pine evolution and the very significant role that fire has played. Results - Pinus originated ~150 Ma in the mid-Mesozoic Era and radiated across the northern continent of Laurasia during the Cretaceous Period. Pines have followed two evolutionary strategies interpreted as responses to competition by the newly emerging angiosperms. The Strobus lineage mostly has radiated into stressful sites of low nutrient soils and extremes in cold or heat. The Pinus (subgenus) lineage has radiated into fire-prone landscapes with diverse fire regimes. Examination of life history traits illustrates syndromes associated with fire-avoider, fire-tolerater, fire-embracer, and fire-refuge strategies. Conclusion - Understanding the current pattern of pine distribution requires interpreting their evolution in terms of climate, geology, and fire. All three of these factors have played a role since the Mesozoic origin of the genus. All are important to the appropriate management of these resources.
Annals of Forest Science↗
Records of engagement and decision making for environmental and socio-ecological challenges
We propose creating and maintaining records of engagement and decision-making (RoED) to help us and our communities better understand ourselves, our goals, our decisions, and the dynamic systems in which we all live. The purpose of RoED is to go well beyond noting that dialogue occurred or a decision was reached. The records should, in ways appropriate to the context and participants, document interactions and note biases, beliefs, emotions, behaviors, norms, and values. These crucial aspects are generally absent in academic papers and formal reports, yet they always play a role in decision-making processes. While not a panacea for addressing critical biophysical and social challenges, we propose that a comprehensive framework for promoting realistic, legitimate and inclusive engagement could enhance trust, establish institutional memory, and when and where appropriate, ensure greater transparency. The aim is to create and maintain RoED to collect significant information and share insights from multi-stakeholder decision-making processes from diverse institutions, contexts, and disciplinary domains. In the long-term RoED could promote more effective adaptive management or governance approaches. This paper describes an exploratory phase intended to catalyze collaborative efforts worldwide.
EURO Journal on Decision Processes↗
Distribution and ecology of deep-water benthic foraminifera in the Gulf of Mexico
Bathyal and abyssal foraminifera in the Gulf of Mexico are distributed among thirteen generic predominance facies. Five predominance facies nearly encircle the Gulf basin along the slope and rise; a sixth predominance facies blankets the Sigsbee Plain, and a seventh is restricted to the Mississippi Fan. The remaining eight predominance facies have more restricted distributions. The areal patterns of these predominance facies can be related chiefly to water mass and substrate characteristics; modifications are brought about by calcite dissolution, upwelling, and sill depth. Analysis of ancient generic predominance facies is useful in predicting relative paleobathymetry and other paleoenvironmental properties.
Alabama, Florida, Louisiana, Mississippi, Texas↗
Rainforest carnivore ecology in a managed forest reserve: Differential seasonal correlates between habitat components and relative abundance
Studies of relationships between seasons and Neotropical carnivore distributions tend to focus on water and prey availability without considering other habitat components such as escape, foraging, and resting cover. Our goal was to evaluate habitat characteristics that may be important for predicting the seasonal (dry or rainy) relative abundance of four commonly captured Neotropical carnivores (i.e., jaguar [ Panthera onca ], puma [ Puma concolor ], ocelot [ Leopardus pardalis ], and grey fox [ Urocyon cinereoargenteus ]) in Chiquibul Forest Reserve in Belize, Central America. We used trail camera data and random-effect Poisson models to investigate how prey ratios (number of prey detections/total detections), cover (e.g., logs and stumps used for hiding cover from predators), vegetation structure, and environmental site characteristics (e.g., site harvest-history, slope, aspect) were related to carnivore relative abundance. Both prey ratios and vegetation structure appeared in supported models more frequently than other environmental site characteristics and were negatively correlated with carnivore relative abundance. Supported models differed for each season for all species except jaguars for which mammalian prey ratios and prey cover at sites was always negatively correlated with jaguar relative abundance. Carnivores appeared to avoid sites where vegetation created ideal escape and hiding cover for prey even though prey may be less abundant. Our data suggest that vegetation structure and composition can create conditions conducive to carnivore foraging and that these characteristics can differ by season in the tropics.
Biological Conservation↗
Ecological effects of establishing a 40-year oasis protection system in a Northwestern China Desert
Aims: Desertification around oasis areas is a serious problem in semi-arid and arid regions, which is expected to continue into the future due to a rapidly increasing human population. Oasis protection systems are created to reverse desertification by recovering degraded soil and vegetation properties and improving ecosystem services. Most research has focused on the short-term effects of a single restoration practice using an individual vegetation or soil metric, while more complete assessments along a gradient of an entire oasis protection system have seldom been studied. In this study, soil and vegetation properties were measured along a 40-year oasis-protection system to assess the effectiveness of increasing land protection belts along a gradient from prohibiting grazing, to fencing shrubland, to establishing shrub- and tree-plantations in northwestern China. Methods: Three sites in each belt of the oasis-protection system were selected to measure soil texture, soil organic carbon, total nitrogen, total phosphorus, pH, electrical conductivity, and eight ions under the plant canopy and in the inter-canopy area, as well as to investigate plant community composition, diversity and productivity. Wind velocity and sand transportation rates were measured in each of the five belts during storm events. Results: Compared with shifting dunes in unprotected desert settings, the wind velocity and sand transportation rate decreased by 75 and 98%, respectively, when spring storms passed through the most protected plantation belts in the oasis system. Soil organic carbon, total nitrogen, total phosphorus significantly increased, along with the silt and clay contents, across the protection gradient, and reached their highest levels at the shrub- and tree-plantation belts. Similarly, the density, cover, and biomass of herbaceous plants also increased along the gradient. Despite these positive effects, there was a significant increase in soil salinity, sodicity, and desiccation at the shrub- and tree-plantation belts, which may negatively affect the future sustainability of the oasis-protection system under a predicted future drier and warming climate. Conclusions Although shrub and tree plantations improve soil fertility and favor the development of the herbaceous plant community, their environmental consequences (i.e., soil salinization and desiccation) need to be evaluated in the context of ecosystem restoration over the long-term, especially in arid regions.
Catena↗
Combined ecological and geologic perspectives in ecosystem studies
No abstract available.
Chemical Geology↗
Floodplain ecology: A novel wetland community of the Amazon
An expedition to the upper estuarine reaches of the Amazon River reveals intriguing overlap of tropical mangrove wetlands with riverine floodplain forests. This newly discovered type of forested wetland assemblage may provide a uniquely process-rich carbon hotspot.
Amazon River↗
Mercury bioaccumulation and risk to three waterbird foraging guilds is influenced by foraging ecology and breeding stage
We evaluated mercury (Hg) in five waterbird species representing three foraging guilds in San Francisco Bay, CA. Fish-eating birds (Forster's and Caspian terns) had the highest Hg concentrations in thier tissues, but concentrations in an invertebrate-foraging shorebird (black-necked stilt) were also elevated. Foraging habitat was important for Hg exposure as illustrated by within-guild differences, where species more associated with marshes and salt ponds had higher concentrations than those more associated with open-bay and tidal mudflats. Importantly, Hg concentrations increased with time spent in the estuary. Surf scoter concentrations tripled over six months, whereas Forster's terns showed an up to 5-fold increase between estuary arrival and breeding. Breeding waterbirds were at elevated risk of Hg-induced reproductive impairment, particularly Forster's terns, in which 48% of breeding birds were at high risk due to their Hg??levels. Our results highlight the importance of habitat and exposure timing, in addition to trophic position, on waterbird Hg bioaccumulation and risk.
Environmental Pollution↗
Trace organic contaminants in U.S. national park surface waters: Prevalence and ecological context☆
Surface water samples were collected from 264 sites across 46 U.S national parks during the period of 2009–2019. The number of sites within each park ranged from 1 to 31 and the number of samples collected within each park ranged from 1 to 201. Samples were analyzed for up to 340 trace organic contaminants (TrOCs), including pharmaceuticals, personal care products, pesticides, and various contaminants indicative of anthropogenic influence (e.g., fragrances, surfactants, flame retardants). A total of 155 TrOCs was detected in at least one sample with concentrations ranging from the reporting level of 10 ng/L (multiple contaminants) to 11,900 ng/L (p-cresol). Except for bisphenol A, DEET, theobromine, and gabapentin, TrOCs were detected in <20% of samples. Despite the relatively low detection frequencies, when TrOCs were detected, concentrations were similar to those reported from other regional or national studies. We compared detected concentrations to bioactivity concentrations and water quality benchmarks, when available, to identify occurrences of elevated concentrations and to estimate the potential for biological effects to aquatic biota. Elevated concentrations of 27 TrOCs, mostly pesticides, were detected throughout the study. To gain insight regarding potential sources, we related watershed characteristics (e.g., land cover, presence of point sources) to the number of TrOCs detected at each site. We found that the presence of wastewater treatment plants and the proportion of the watershed classified as agricultural land were the most influential variables for describing the number of pharmaceuticals and the number of pesticides present, respectively. This study represents the largest-scale study characterizing the presence and magnitude of TrOCs in U.S. national park surface waters, to date. These data provide a baseline that can be used to inform future monitoring within the parks and to assess changes in water quality.
Environmental Pollution↗
SemantEco: a semantically powered modular architecture for integrating distributed environmental and ecological data
We aim to inform the development of decision support tools for resource managers who need to examine large complex ecosystems and make recommendations in the face of many tradeoffs and conflicting drivers. We take a semantic technology approach, leveraging background ontologies and the growing body of linked open data. In previous work, we designed and implemented a semantically enabled environmental monitoring framework called SemantEco and used it to build a water quality portal named SemantAqua. Our previous system included foundational ontologies to support environmental regulation violations and relevant human health effects. In this work, we discuss SemantEco’s new architecture that supports modular extensions and makes it easier to support additional domains. Our enhanced framework includes foundational ontologies to support modeling of wildlife observation and wildlife health impacts, thereby enabling deeper and broader support for more holistically examining the effects of environmental pollution on ecosystems. We conclude with a discussion of how, through the application of semantic technologies, modular designs will make it easier for resource managers to bring in new sources of data to support more complex use cases.
Future Generation Computer Systems↗
Exposure to domoic acid is an ecological driver of cardiac disease in southern sea otters
Harmful algal blooms produce toxins that bioaccumulate in the food web and adversely affect humans, animals, and entire marine ecosystems. Blooms of the diatom Pseudo-nitzschia can produce domoic acid (DA), a toxin that most commonly causes neurological disease in endothermic animals, with cardiovascular effects that were first recognized in southern sea otters. Over the last 20 years, DA toxicosis has caused significant morbidity and mortality in marine mammals and seabirds along the west coast of the USA. Identifying DA exposure has been limited to toxin detection in biological fluids using biochemical assays, yet measurement of systemic toxin levels is an unreliable indicator of exposure dose or timing. Furthermore, there is little information regarding repeated DA exposure in marine wildlife. Here, the association between long-term environmental DA exposure and fatal cardiac disease was investigated in a longitudinal study of 186 free-ranging sea otters in California from 2001 – 2017, highlighting the chronic health effects of a marine toxin. A novel Bayesian spatiotemporal approach was used to characterize environmental DA exposure by combining several DA surveillance datasets and integrating this with life history data from radio-tagged otters in a time-dependent survival model. In this study, a sea otter with high DA exposure had a 1.7-fold increased hazard of fatal cardiomyopathy compared to an otter with low exposure. Otters that consumed a high proportion of crab and clam had a 2.5- and 1.2-times greater hazard of death due to cardiomyopathy than otters that consumed low proportions. Increasing age is a well-established predictor of cardiac disease, but this study is the first to identify that DA exposure affects the risk of cardiomyopathy more substantially in prime-age adults than aged adults. A 4-year-old otter with high DA exposure had 2.3 times greater risk of fatal cardiomyopathy than an otter with low exposure, while a 10-year old otter with high DA exposure had just 1.2 times greater risk. High Toxoplasma gondii titers also increased the hazard of death due to heart disease 2.4-fold. Domoic acid exposure was most detrimental for prime-age adults, whose survival and reproduction are vital for population growth, suggesting that persistent DA exposure will likely impact long-term viability of this threatened species. These results offer insight into the pervasiveness of DA in the food web and raise awareness of under-recognized chronic health effects of DA for wildlife at a time when toxic blooms are on the rise.
California↗
Spatial and temporal patterns across an ecological boundary: Allochthonous effects of a young saltwater lake on a desert ecosystem
We documented changes in the abundance and composition of terrestrial flora and fauna with respect to distance from the sea edge and timing of large allochthonous inputs from the Salton Sea, California. We found significant effects that were most pronounced within 300 m of the shore, but extended 3 km inland via coyote scat deposition. The zone within 300 m of the sea had a higher density of vegetation with a distinctly different plant composition. The denser vegetation supported higher abundances of birds and reptiles. Coyotes exhibited spatial and temporal responses to marine subsidies of fish, while birds were likely subsidized by aquatic aerial insects. Top-down control, as well as dietary and habitat preferences, may have resulted in reduced number of ants, beetles, and small mammals near the sea. Species responses to the habitat edge appeared to be associated with life history, as the near shore habitat favored habitat generalists and shore specialists, while inland desert habitat favored many sand and open desert specialists. Ecosystem responses support current theories of allochthonous spatial subsidies and consumer-resource dynamics but were limited in scope, magnitude, and distance.
Journal of Arid Environments↗
Floral ecology and insect visitation in riparian Tamarix sp. (saltcedar)
Climate change projections for semiarid and arid North America include reductions in stream discharge that could adversely affect riparian plant species dependent on stream-derived ground water. In order to better understand this potential impact, we used a space-for-time substitution to test the hypotheses that increasing depth-to-groundwater (DGW) is inversely related to Tamarix sp. (saltcedar) flower abundance (F) and nectar production per flower (N). We also assessed whether DGW affected the richness or abundance of insects visiting flowers. We examined Tamarix floral attributes and insect visitation patterns during 2010 and 2011 at three locations along a deep DWG gradient (3.2–4.1 m) on a floodplain terrace adjacent to Las Vegas Wash, an effluent-dominated Mojave Desert stream. Flower abundance and insect visitation patterns differed between years, but no effect from DGW on either F or N was detected. An eruption of a novel non-native herbivore, the splendid tamarisk weevil (Coniatus splendidulus), likely reduced flower production in 2011.
Journal of Arid Environments↗
An ecological basis for future fish habitat restoration efforts in the Huron-Erie Corridor
This perspective describes the major natural and anthropogenic forces driving change in the abundance and quality of fish habitats in the Huron-Erie Corridor (HEC), the Great Lakes connecting channel comprised of the St. Clair River, the Lake St. Clair, and the Detroit River. Channels connecting the Laurentian Great Lakes discharge large volumes of water equal to or greater than most other large rivers in the world that is of consistent high quality and volume, all year. Owing to creation of the St. Lawrence Seaway through the Great Lakes, the connecting channels have been modified by dredging over 200 km of deep-draft shipping lanes with a maintained depth of no less than 8.2 m. Combined with modification of their shorelines for housing and industries, use of the connecting channels for discharges of industrial and municipal wastes and shipping has resulted in numerous beneficial use impairments, such as restrictions on fish and wildlife consumption, degradation of fish and wildlife populations, and losses of fish and wildlife habitat. Various options for remediation of native fish populations and their habitats in the Great Lakes connecting channels, including construction of spawning habitat for threatened and high-value food fishes, such as lake sturgeon (Acipenser fulvescens), walleye (Sander vitreus), and lake whitefish (Coregonus clupeaformis), have been implemented successfully in two of the channels, and form the basis for further recommended research described in this article.
Huron-Erie corridor↗
Ecological controls on the shell geochemistry of pink and white Globigerinoides ruber in the northern Gulf of Mexico: implications for paleoceanographic reconstruction
We evaluate the relationship between foraminiferal test size and shell geochemistry (δ 13 C, δ 18 O, and Mg/Ca) for two of the most commonly used planktonic foraminifers for paleoceanographic reconstruction in the subtropical Atlantic Ocean: the pink and white varieties of Globigerinoides ruber. Geochemical analyses were performed on foraminifera from modern core-top samples of high-accumulation rate basins in the northern Gulf of Mexico. Mg/Ca analysis indicates a positive relationship with test size, increasing by 1.1 mmol/mol (~ 2.5 °C) from the smallest (150–212 μm) to largest (> 500 μm) size fractions of G. ruber (pink), but with no significant relationship in G. ruber (white). In comparison, oxygen isotope data indicate a negative relationship with test size, decreasing by 0.6‰ across the size range of both pink and white G. ruber. The observed increase in Mg/Ca and decrease in δ 18 O are consistent with an increase in calcification temperature of 0.7 °C per 100 μm increase in test size, suggesting differences in the seasonal and/or depth distribution among size fractions. Overall, these results stress the necessity for using a consistent size fraction in downcore paleoceanographic studies. In addition, we compare downcore records of δ 18 O and Mg/Ca from pink and white G. ruber in a decadal-resolution 1000-year sedimentary record from the Pigmy Basin. Based on this comparison we conclude that pink G. ruber is calcifying in warmer waters than co-occurring white G. ruber, suggesting differences in the relative seasonal distribution and depth habitat of the two varieties.
Marine Micropaleontology↗