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Nerodia clarkii (Saltmarsh Watersnake). Predation

Predators of Nerodia clarkii are suspected to include larger species of crabs, fish, wading birds, snakes, alligators, and crocodiles. To our knowledge, there have only been two published observations of predation on N. clarkii, including a predation attempt from a Callinectes sapidus (Blue Crab) in Mississippi, USA and a successful predation by a Grus americana (Whooping Crane) in Texas, USA. Herein we report on predation of N. clarkii and a suspected Nerodia clarkii x fasciata pictiventris (Saltmarsh Watersnake and Florida Banded Watersnake) hybrid by Crocodylus acutus (American Crocodile) in South Florida, USA.

Herpetological Review↗

Final Report fr critical thresholds and ecosystem services for coastal ecological and human climate adaptation

Understanding how climate change will impact natural and human communities is a crucial part of decision making and management related to the protection of our coasts. As the effects of climate change on ecological communities grow, the possibility of crossing tipping points or thresholds of viability increases the potential for rapid and possibly irreversible changes in ecosystems. Therefore, understanding thresholds related to climate change is critical for facilitating conservation and management actions, which could help to prevent more costly and possibly catastrophic effects in the future. As part of a broad effort to synthesize and deliver coastal resilience information through the Landscape Conservation Cooperatives (LCCs), Climate Science Centers, states, and other partners along the Atlantic and Gulf Coasts, we synthesized existing quantitative threshold information for 45 priority coastal fish, wildlife, and plant species and habitats in response to sea level rise and storm projections. Additional information was synthesized on climate change adaptation actions that can increase the persistence and resilience of species and their habitats and how these actions relate to human community resilience. In addition to two peer-reviewed manuscripts, results from these synthesis efforts were disseminated online through easily accessible, topic-specific web pages in the Massachusetts Wildlife Climate Action Tool (climateactiontool.org) to make this information more easily accessible to stakeholders across the region. The compilation and dissemination of species and habitat threshold information will help to develop a more comprehensive understanding of how natural systems will respond to climate change and how land and resource management decisions could potentially help these species.

Report↗

Perceptions of species abundance, distribution, and diversity: Lessons from four decades of sampling on a government-managed reserve

We examined data relative to species abundance, distribution, and diversity patterns of reptiles and amphibians to determine how perceptions change over time and with level of sampling effort. Location data were compiled on more than one million individual captures or observations of 98 species during a 44-year study period on the US Department of Energy’s (DOE) Savannah River Site National Environmental Research Park (SRS-NERP) in South Carolina. We suggest that perceptions of herpetofaunal species diversity are strongly dependent on level of effort and that land management decisions based on short-term data bases for some faunal groups could result in serious errors in environmental management. We provide evidence that acquiring information on biodiversity distribution patterns is compatible with multiyear spatially extensive research programs and also provide a perspective of what might be achieved if long-term, coordinated research efforts were instituted nationwide. To conduct biotic surveys on government-managed lands, we recommend revisions in the methods used by government agencies to acquire and report biodiversity data. We suggest that government and industry employees engaged in biodiversity survey efforts develop proficiency in field identification for one or more major taxonomic groups and be encouraged to measure the status of populations quantitatively with consistent and reliable methodologies. We also suggest that widespread academic cooperation in the dissemination of information on regional patterns of biodiversity could result by establishment of a peer-reviewed, scientifically rigorous journal concerned with status and trends of the biota of the United States.

Environmental Management↗

Post-wildfire hydrologic recovery in Mediterranean climates: A systematic review and case study to identify current knowledge and opportunities

Post-fire hydrologic research typically focuses on the first few years after a wildfire , leading to substantial uncertainty regarding the longevity of impacts. The time needed for hydrologic function to return to pre-fire conditions is critical information for post-fire land and water management decisions. This is particularly true in Mediterranean climates , where water is scarce and in high demand, and the severity and area burned by wildfires are increasing. In part, uncertainty about hydrologic recovery is due to lack of a consistent definition or interpretation of what constitutes “recovery.” Here, we systematically reviewed empirical studies from Mediterranean climates with at least three years of post-fire hydrologic data with the objectives of (a) assessing the recovery period, (b) identifying a definition of post-fire hydrologic recovery, (c) demonstrating a simple analytical approach to aid in assessment of recovery, and (d) outlining research needs and opportunities to better quantify post-fire recovery. We assessed the hydrologic effects reported in 38 sites that were monitored for 3–20 years. Eighteen sites were considered recovered within seven years; however, the recovery time was inconsistent across sites and was not related to location, response variable, or study design. The likelihood of recovery within the study period also decreased with increasing proportion of the watershed area burned. Importantly, we have also proposed a standardized definition and an approach to quantifying hydrologic recovery that may facilitate cross-study comparisons and a deeper understanding of recovery. Specifically, we propose hydrologic recovery has occurred when a specific post-fire hydrologic function or condition of interest returns to the 95% confidence interval of the pre-fire condition. In support of this definition, we have demonstrated applying this simple approach to assess recovery and presented future research topics to improve our understanding of long-term post-fire catchment responses. In addition to the need for more studies that quantify hydrologic responses farther into the post-fire period, understanding post-fire changes in soil structural and hydraulic properties through time will improve our mechanistic understanding of post-fire hydrologic responses and recovery.

Journal of Hydrology↗

Factors influencing riverine fish assemblages in Massachusetts

The U.S. Geological Survey, in cooperation with the Massachusetts Department of Conservation and Recreation, Massachusetts Department of Environmental Protection, and the Massachusetts Department of Fish and Game, conducted an investigation of fish assemblages in small- to medium-sized Massachusetts streams. The objective of this study was to determine relations between fish-assemblage characteristics and anthropogenic factors, including impervious cover and estimated flow alteration, relative to the effects of environmental factors, including physical-basin characteristics and land use. The results of this investigation supersede those of a preliminary analysis published in 2010. Fish data were obtained for 669 fish-sampling sites from the Massachusetts Division of Fisheries and Wildlife fish-community database. A review of the literature was used to select fish metrics - species richness, abundance of individual species, and abundances of species grouped on life history traits - responsive to flow alteration. The contributing areas to the fish-sampling sites were delineated and used with a geographic information system to determine a set of environmental and anthropogenic factors that were tested for use as explanatory variables in regression models. Reported and estimated withdrawals and return flows were used together with simulated unaltered streamflows to estimate altered streamflows and indicators of flow alteration for each fish-sampling site. Altered streamflows and indicators of flow alteration were calculated on the basis of methods developed in a previous U.S. Geological Survey study in which unaltered daily streamflows were simulated for a 44-year period (water years 1961-2004), and streamflow alterations were estimated by use of water-withdrawal and wastewater-return data previously reported to the State for the 2000-04 period and estimated domestic-well withdrawals and septic-system discharges. A variable selection process, conducted using principal components analysis and Spearman rank correlation, was used to select a set of 15 non-redundant environmental and anthropogenic factors to test for use as explanatory variables in the regression analyses. Twenty-one fish species were used in a multivariate analysis of fish-assemblage patterns. Results of nonmetric multidimensional scaling and hierarchical cluster analysis were used to group fish species into fluvial and macrohabitat generalist habitat-use classes. Two analytical techniques, quantile regression and generalized linear modeling, were applied to characterize the association between fish-response variables and environmental and anthropogenic explanatory variables. Quantile regression demonstrated that as percent impervious cover and an indicator of percent alteration of August median flow from groundwater withdrawals increase, the relative abundance and species richness of fluvial fish decrease. The quantile regression plots indicate that (1) as many as seven fluvial fish species are expected in streams with little flow alteration or impervious cover, (2) no more than four fluvial fish species are expected in streams where flow alterations from groundwater withdrawals exceed 50 percent of the August median flow or the percent area of impervious cover exceeds 15 percent, and (3) few fluvial fish remain at high rates of withdrawal (approaching 100 percent) or high rates of impervious cover (between 25 and 30 percent). Three generalized linear models (GLMs) were developed to quantify the response of fluvial fish to multiple environmental and anthropogenic variables. All variables in the GLM equations were demonstrated to be significant (p less than 0.05, with most less than 0.01). Variables in the fluvial-fish relative-abundance model were channel slope, estimated percent alteration of August median flow from groundwater withdrawals, percent wetland in a 240-meter buffer strip, and percent impervious cover. Variables in the fluvial-fish species-richness model were drainage area, channel slope, total undammed reach length, percent wetland in a 240-meter buffer strip, and percent impervious cover. Variables in the brook trout relativeabundance model were drainage area, percent open water, and percent impervious cover. The variability explained by the GLM models, as measured by the pseudo R2, ranged from 18.2 to 34.6, and correlations between observed and predicted values ranged from 0.50 to 0.60. Results of GLM models indicated that, keeping all other variables the same, a one-unit (1 percent) increase in the percent depletion of August median flow would result in a 0.9-percent decrease in the relative abundance (in counts per hour) of fluvial fish. The results of GLM models also indicated that a unit increase in impervious cover (1 percent) resulted in a 3.7-percent decrease in the relative abundance of fluvial fish, a 5.4-percent decrease in fluvial-fish species richness, and an 8.7-percent decrease in brook trout relative abundance.

Massachusetts↗

Biodiversity of amphibians and reptiles at the Camp Cady Wildlife Area, Mojave Desert, California and comparisons with other desert locations

We examined the biodiversity of amphibian and reptile species living in and near constructed ponds in the riparian area at the Camp Cady Wildlife Area (CCWA) in the Mojave Desert of San Bernardino County, California, based on field work from 1998-1999, 2016-2017, review of the literature, and searches for museum specimens using VertNet.org. A total of 11 species (201 captures), including two frogs and toads (one non-native frog), one turtle, three snakes, and five lizards were captured at terrestrial drift fences with pitfall traps encircling two ponds (0.5 hectares total) on the property in 1999. Four additional species (one frog, one lizard, and two snakes) were previously reported in 1978 from a ranch 1.6 km southwest from CCWA for a total of 15 species in the local area. The southwestern pond turtle (Actinemys pallida), was commonly observed at CCWA from 1998 to 1999 and documented as a breeding population. However, the species was extirpated at CCWA sometime after 2014 when the last individuals were photographed, and none have been detected since then despite significant efforts to do so. Biodiversity of amphibians and reptiles at CCWA is relatively low compared with sites elsewhere in the Mojave Desert with more elevational diversity. The 14 native species documented at CCWA accounts for approximately 21% of the native reptile and amphibian species reported by Stewart (1994) for the entire Mojave Desert, including peripheral species. Our smaller sample likely represents a group of easily detected species and is biased toward those found in or near water, especially amphibians. However, the relative proportion of amphibians vs. reptiles that inhabited CCWA in the last 40 years is not significantly different from the recently compiled proportions at five military installations in the California deserts. The herpetofauna inhabiting CCWA is notable for including riparian obligates like the western toad (Anaxyrus boreas), Northern Baja California treefrog (Pseudacris h. hypochondriaca), and A. pallida that are otherwise absent from large portions of the Mojave Desert. Other species are typical of those that are expected in the low-elevation creosote scrubdominated ecosystem in the area.

California↗

Patterns of water-quality variability in San Francisco Bay during the first six years of the regional monitoring program, 1993-1998

Monitoring Results presents data from the Status and Trends portion of the 1998 San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP). A list of reports on Pilot and Special Studies, as well as other RMP related activities can be found at the end of this document. These reports provide perspective and insight on important contaminant issues identified by the RMP, and they describe results from projects that took advantage of RMP field operations. For a summary of the conditions of the Estuary see The Pulse . A print copy may also be ordered by contacting the San Francisco Estuary Institute (SFEI). In 1998, the San Francisco Regional Water Quality Control Board (Regional Board) and seventy-three federal, state, and local agencies and companies participated in the RMP as funders and service providers (Table 1.1). Participants also assist in directing the Program through input or participation on the Steering and Technical Review Committees. The RMP’s overall goal is to provide data and interpretation that helps to address certain information needs of the Regional Board. In general, these efforts fall under five major objectives which provide a framework for efforts to respond to more specific management questions. 1. Describe patterns and trends in contaminant concentration and distribution. 2. Describe general sources and loadings of contamination to the Estuary. 3. Measure contaminant effects on selected parts of the Estuary ecosystem. 4. Compare monitoring information to relevant water quality objectives and other guidelines. 5. Synthesize and distribute information from a range of sources to present a more complete picture of the sources, distribution, fates, and effects of contaminants in the Estuary ecosystem.

California↗

Assessing the feasibility of native fish reintroductions: a framework and example applied to bull trout in the Clackamas River, Oregon

In a species conservation context, translocations can be an important tool, but they frequently fail to successfully establish new populations. We consider the case of reintroductions for bull trout (Salvelinus confluentus), a federally-listed threatened species with a widespread but declining distribution in western North America. Our specific objectives in this work were to: 1) develop a general framework for assessing the feasibility of reintroduction for bull trout, 2) provide a detailed example of implementing this framework to assess the feasibility of reintroducing bull trout in the Clackamas River, Oregon, and 3) discuss the implications of this effort in the more general context of fish reintroductions as a conservation tool. Review of several case histories and our assessment of the Clackamas River suggest that an attempt to reintroduce bull trout could be successful, assuming adequate resources are committed to the subsequent stages of implementation, monitoring, and evaluation.

Open-File Report↗

Workshop on applications of luminescence techniques to Earth resource studies

The purpose of the Workshop on Luminescence Techniques was threefold: (1) to review the state-of-the-art capabilities of luminescence methods, (2) to consider a variety of concepts for the development of future luminescence sensor systems, and (3) to discuss appropriate research and development strategies for advancing the current state-of-the-art.

Technical Report↗

Argon thermochronology of mineral deposits; a review of analytical methods, formulations, and selected applications

40Ar/39Ar geochronology is an experimentally robust and versatile method for constraining time and temperature in geologic processes. The argon method is the most broadly applied in mineral-deposit studies. Standard analytical methods and formulations exist, making the fundamentals of the method well defined. A variety of graphical representations exist for evaluating argon data. A broad range of minerals found in mineral deposits, alteration zones, and host rocks commonly is analyzed to provide age, temporal duration, and thermal conditions for mineralization events and processes. All are discussed in this report. The usefulness of and evolution of the applicability of the method are demonstrated in studies of the Panasqueira, Portugal, tin-tungsten deposit; the Cornubian batholith and associated mineral deposits, southwest England; the Red Mountain intrusive system and associated Urad-Henderson molybdenum deposits; and the Eastern Goldfields Province, Western Australia.

Bulletin↗

Increasing comparability among coral bleaching experiments

Coral bleaching is the single largest global threat to coral reefs worldwide. Integrating the diverse body of work on coral bleaching is critical to understanding and combating this global problem. Yet investigating the drivers, patterns, and processes of coral bleaching poses a major challenge. A recent review of published experiments revealed a wide range of experimental variables used across studies. Such a wide range of approaches enhances discovery, but without full transparency in the experimental and analytical methods used, can also make comparisons among studies challenging. To increase comparability but not stifle innovation, we propose a common framework for coral bleaching experiments that includes consideration of coral provenance, experimental conditions, and husbandry. For example, reporting the number of genets used, collection site conditions, the experimental temperature offset(s) from the maximum monthly mean (MMM) of the collection site, experimental light conditions, flow, and the feeding regime will greatly facilitate comparability across studies. Similarly, quantifying common response variables of endosymbiont (Symbiodiniaceae) and holobiont phenotypes (i.e., color, chlorophyll, endosymbiont cell density, mortality, and skeletal growth) could further facilitate cross-study comparisons. While no single bleaching experiment can provide the data necessary to determine global coral responses of all corals to current and future ocean warming, linking studies through a common framework as outlined here, would help increase comparability among experiments, facilitate synthetic insights into the causes and underlying mechanisms of coral bleaching, and reveal unique bleaching responses among genets, species, and regions. Such a collaborative framework that fosters transparency in methods used would strengthen comparisons among studies that can help inform coral reef management and facilitate conservation strategies to mitigate coral bleaching worldwide.

Ecological Applications↗

[Book review] The birds of San Diego County

San Diego County, California is larger in area than 2 of the 50 states (combined), its geographic (and thus biological) diversity ranges from the seacoast across mountains of nearly 2,000 m elevation to extreme desert, it is the southwesternmost county of the contiguous U.S., and it is inhabited by dedicated birders whose observations have boosted the county list to more than 450 species. "The Birds of San Diego County" provides detailed information on the geographic, ecological, and temporal distribution and abundance of each of the 449 species of native birds reported in the county-for some, by subspecies. Maps of breeding distribution are presented for 129 of the 181 breeding species (of which 26 are considered to be extirpated or only occasional breeders). Ecological zones and terms of abundance are defined precisely, and the definitions are adhered to. Welcomely absent are long para- graphs of descriptive and generalized information.

The Auk↗

U.S. Geological Survey Karst Interest Group Proceedings, San Antonio, Texas, May 16–18, 2017

Introduction and Acknowledgments Karst aquifer systems are present throughout parts of the United States and some of its territories, and have developed in carbonate rocks (primarily limestone and dolomite) and evaporites (gypsum, anhydrite, and halite) that span an interval of time encompassing more than 550 million years. The depositional environments, diagenetic processes, post-depositional tectonic events, and geochemical weathering processes that form karst aquifers are varied and complex. These factors involve biological, chemical, and physical changes that when combined with the diverse climatic regimes in which karst development has taken place, result in the unique dual- or triple-porosity nature of karst aquifers. These complex hydrogeologic systems typically represent challenging and unique conditions to scientists attempting to study groundwater flow and contaminant transport in these terrains. The dissolution of carbonate rocks and the subsequent development of distinct and beautiful landscapes, caverns, and springs have resulted in the most exceptional karst areas being designated as national or state parks. Tens of thousands of similar areas in the United States have been developed into commercial caverns and known privately owned caves. Both public and private properties provide access for scientists to study the flow of groundwater in situ . Likewise, the range and complexity of landforms and groundwater flow systems associated with karst terrains are enormous, perhaps more than for any other aquifer type. Karst aquifers and landscapes that form in tropical areas, such as the cockpit karst along the north coast of Puerto Rico, differ greatly from karst landforms in more arid climates, such as the Edwards Plateau in west-central Texas or the Guadalupe Mountains near Carlsbad, New Mexico, where hypogenic processes have played a major role in speleogenesis. Many of these public and private lands also contain unique flora and fauna associated with these karst hydrogeologic systems. As a result, numerous federal, state, and local agencies have a strong interest in the study of karst terrains. Many of the major springs and aquifers in the United States have developed in carbonate rocks, such as the Floridan aquifer system in Florida and parts of Alabama, Georgia, and South Carolina; the Ozark Plateaus aquifer system in parts of Arkansas, Kansas, Missouri, and Oklahoma; and the Edwards-Trinity aquifer system in west-central Texas. These aquifers, and the springs that discharge from them, serve as major water-supply sources and form unique ecological habitats. Competition for the water resources of karst aquifers is common, and urban development and the lack of attenuation of contaminants in karst areas due to dissolution features that form direct pathways into karst aquifers can impact the ecosystem and water quality associated with these aquifers. The concept for developing a platform for interaction among scientists within the U.S. Geological Survey (USGS) working on karst-related studies evolved from the November 1999 National Groundwater Meeting of the USGS. As a result, the Karst Interest Group (KIG) was formed in 2000. The KIG is a loose-knit, grass-roots organization of USGS and non-USGS scientists and researchers devoted to fostering better communication among scientists working on, or interested in, karst science. The primary mission of the KIG is to encourage and support interdisciplinary collaboration and technology transfer among scientists working in karst areas. Additionally, the KIG encourages collaborative studies between the different mission areas of the USGS as well as with other federal and state agencies, and with researchers from academia and institutes. To accomplish its mission, the KIG has organized a series of workshops that have been held near nationally important karst areas. To date (2017) seven KIG workshops, including the workshop documented in this report, have been held. The workshops typically include oral and poster sessions on selected karst-related topics and research, as well as field trips to local karst areas. To increase non-USGS participation an effort was made for the workshops to be held at a university or institute beginning with the fourth workshop. Proceedings of the workshops are published by the USGS and are available online at the USGS publications warehouse https://pubs.er.usgs.gov/ by using the search term “karst interest group.” The first KIG workshop was held in St. Petersburg, Florida, in 2001, in the vicinity of the large springs and other karst features of the Floridan aquifer system. The second KIG workshop was held in 2002, in Shepherdstown, West Virginia, in proximity to the carbonate aquifers of the northern Shenandoah Valley, and highlighted an invited presentation on karst literature by the late Barry F. Beck of P.E. LaMoreaux and Associates. The third KIG workshop was held in 2005, in Rapid City, South Dakota, near evaporite karst features in limestones of the Madison Group in the Black Hills of South Dakota. The Rapid City KIG workshop included field trips to Wind Cave National Park and Jewel Cave National Monument, and featured a presentation by Thomas Casadevall, then USGS Central Region Director, on the status of Earth science at the USGS. The fourth KIG workshop in 2008 was hosted by the Hoffman Environmental Research Institute and Center for Cave and Karst Studies at Western Kentucky University in Bowling Green, Kentucky, near Mammoth Cave National Park and karst features of the Chester Upland and Pennyroyal Plateau. The workshop featured a late-night field trip into Mammoth Cave led by Rickard Toomey and Rick Olsen, National Park Service. The fifth KIG workshop in 2011 was a joint meeting of the USGS KIG and University of Arkansas HydroDays, hosted by the Department of Geosciences at the University of Arkansas in Fayetteville. The workshop featured an outstanding field trip to the unique karst terrain along the Buffalo National River in the southern Ozarks, and a keynote presentation on paleokarst in the United States was delivered by Art and Peggy Palmer. The sixth KIG workshop was hosted by the National Cave and Karst Research Institute (NCKRI) in 2014, in Carlsbad, New Mexico. George Veni, Director of the NCKRI, served as a co-chair of the workshop with Eve Kuniansky of the USGS. The workshop featured speaker Dr. Penelope Boston, Director of Cave and Karst Studies at New Mexico Tech, Socorro, and Academic Director at the NCKRI, who addressed the future of karst research. The field trip on evaporite karst of the lower Pecos Valley was led by Lewis Land (NCKRI karst hydrologist), and the field trip on the geology of Carlsbad Caverns National Park was led by George Veni. This current seventh KIG workshop is being held in San Antonio at the University of Texas at San Antonio (UTSA). This 2017 workshop is being hosted by the Department of Geological Sciences’ Student Geological Society (SGS), and student chapters of the American Association of Petroleum Geologists (AAPG) and Association of Engineering Geologists (AEG), with support by the UTSA Department of Geological Sciences and Center for Water Research. The UTSA student chapter presidents, Jose Silvestre (SGS), John Cooper (AAPG), and Tyler Mead (AEG) serve as co-chairs of the 2017 workshop with Eve Kuniansky of the USGS. The technical session committee is chaired by Eve Kuniansky, USGS, and includes Michael Bradley, Tom Byl, Rebecca Lambert, John Lane, and James Kaufmann, all USGS, and Patrick Tucci, retired USGS. The logistics committee includes Amy Clark, Yongli Gao, and Lance Lambert (Department Chair), UTSA Department of Geological Sciences; and Ryan Banta and Allan Clark, USGS, San Antonio, Texas. The field trip committee is chaired by Allan Clark and includes Amy Clark, Yongli Gao, and Keith Muehlestein, UTSA; Marcus Gary, Edwards Aquifer Authority and University of Texas at Austin; Ron Green, Southwest Research Institute; Geary Schindel, Edwards Aquifer Authority; and George Veni, NCKRI. Additionally, two organizations have assisted the UTSA student chapters in hosting the meeting by donating funds to the chapters: the Edwards Aquifer Authority, San Antonio, Texas, and the Barton Springs Edwards Aquifer Authority, Austin, Texas. Additionally, Yongli Gao, Center for Water Research and Department of Geological Sciences, UTSA, helped develop sessions on cave and karst research in China for this workshop. These proceedings could not have been accomplished without the assistance of Lawrence E. Spangler as co-editor who not only has subject matter expertise, but also serves as an editor with the USGS Science Publishing Network. We sincerely hope that this workshop continues to promote future collaboration among scientists of varied and diverse backgrounds, and improves our understanding of karst aquifer systems in the United States and its territories. The extended abstracts of USGS authors were peer reviewed and approved for publication by the USGS. Articles submitted by university researchers and other federal and state agencies did not go through the formal USGS peer review and approval process, and therefore may not adhere to USGS editorial standards or stratigraphic nomenclature. However, all articles had a minimum of two peer reviews and were edited for consistency of appearance in the proceedings. The use of trade, firm or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. The USGS Water Availability and Use Science Program funded the publication costs of the proceedings.

Scientific Investigations Report↗

Methods of analysis by the U.S. Geological Survey National Water Quality Laboratory-Processing, taxonomy, and quality control of benthic macroinvertebrate samples

Qualitative and quantitative methods to process benthic macroinvertebrate (BMI) samples have been developed and tested by the U.S. Geological Survey?s National Water Quality Laboratory Biological Group. The qualitative processing method is based on visually sorting a sample for up to 2 hours. Sorting focuses on attaining organisms that are likely to result in taxonomic identifications to lower taxonomic levels (for example, Genus or Species). Immature and damaged organisms are also sorted when they are likely to result in unique determinations. The sorted sample remnant is scanned briefly by a second person to determine if obvious taxa were missed. The quantitative processing method is based on a fixed-count approach that targets some minimum count, such as 100 or 300 organisms. Organisms are sorted from randomly selected 5.1- by 5.1-centimeter parts of a gridded subsampling frame. The sorted remnant from each sample is resorted by a second individual for at least 10 percent of the original sort time. A large-rare organism search is performed on the unsorted remnant to sort BMI taxa that were not likely represented in the sorted grids. After either qualitatively or quantitatively sorting the sample, BMIs are identified by using one of three different types of taxonomic assessment. The Standard Taxonomic Assessment is comparable to the U.S. Environmental Protection Agency Rapid Bioassessment Protocol III and typically provides Genus- or Species-level taxonomic resolution. The Rapid Taxonomic Assessment is comparable to the U.S. Environmental Protection Agency Rapid Bioassessment Protocol II and provides Familylevel and higher taxonomic resolution. The Custom Taxonomic Assessment provides Species-level resolution whenever possible for groups identified to higher taxonomic levels by using the Standard Taxonomic Assessment. The consistent use of standardized designations and notes facilitates the interpretation of BMI data within and among water-quality studies. Taxonomic identifications are quality assured by verifying all referenced taxa and randomly reviewing 10 percent of the taxonomic identifications performed weekly by Biological Group taxonomists. Taxonomic errors discovered during this review are corrected. BMI data are reviewed for accuracy and completeness prior to release. BMI data are released phylogenetically in spreadsheet format and unprocessed abundances are corrected for laboratory and field subsampling when necessary.

Open-File Report↗

The U.S. Geological Survey Federal-State Cooperative Water-Resources Program, fiscal year 1986

The U.S. Geological Survey 's Federal-State Cooperative Water Resources Program has been in operation for 91 years as of fiscal year (FY) 1986. Hydrologic data collection and interpretive investigations are underway in every State, Puerto Rico, and several territories in cooperation with more than 900 State, regional and local agencies. Federal funds amounted to $49.8 million in this 50-50 matching activity. Total funding was about $106 million, which included $6.9 million furnished by cooperating agencies on an unmatched basis. The Cooperative Program comprised more than 40% of the overall FY 1986 budget of the Survey 's Water Resources Division. The areas of principal emphasis during the year included groundwater contamination, stream quality, water supply and demand, and hydrologic hazards. Information is presented on program priorities and investigations implemented under the merit proposal process. The status of water use information activities, which are being carried out in 48 states and Puerto Rico is reviewed briefly. Standard methods for collecting the data are being developed. Each state has a computerized State Water-Use Data System for storage and retrieval of water-use data for individual users or facilities. (Lantz-PTT)

Open-File Report↗

Council monitoring and assessment program (CMAP): A framework for using the monitoring program inventory to conduct gap assessments for the Gulf of Mexico Region

Executive Summary Under the Resources and Ecosystem Sustainability, Tourist Opportunities, and Revived Economies of the Gulf Coast States Act of 2012 (RESTORE Act), the Gulf Coast Ecosystem Restoration Council (RESTORE Council or Council) is required to report on the progress of funded projects and programs. Systematic monitoring of restoration at the project-specific and programmatic-levels (watershed and Gulf of Mexico) enables consistent reporting and gives the public confidence that the restoration investments selected by the RESTORE Council will be evaluated and adaptively managed accordingly. Monitoring information that has been collected at different spatial and temporal scales can be used as the foundation to illustrate progress towards comprehensive ecosystem restoration goals and objectives that promote holistic Gulf of Mexico recovery (see ‘RESTORE Council Background’ at the beginning of this report for additional Council information). Currently, federal, state and local agencies, universities, private industry, and non-governmental organizations (NGOs) are conducting monitoring activities at various scales around the Gulf of Mexico. In addition, each RESTORE Council-funded project will, at a minimum, perform project-specific monitoring. This collection of monitoring activities was inventoried and coordinated into a network of existing programs by the Council-funded RESTORE Council Monitoring and Assessment Program (CMAP), which will suggest opportunities for efficiencies and collaborative cross-program review of performance with other Gulf ecosystem recovery efforts. CMAP was designed and funded to inventory and integrate existing monitoring efforts, improve discovery and accessibility of existing monitoring data, and ensure the collected information supports management decisions. The fundamental approach to building the CMAP Gulf of Mexico water quality monitoring, habitat monitoring, and mapping network was to: 1. Adopt, or construct as needed, a comprehensive inventory of existing habitat and water quality observation, monitoring, and mapping programs in the Gulf of Mexico (hereafter referred to as the “Inventory”; NOAA and USGS, 2019a); 2. Evaluate the suitability/applicability of each program and its existing and prospective data for use in restoration activities; 3. Develop a process to use the Inventory to conduct gap assessments; 4. Develop a catalog of baseline assessments conducted in the Gulf of Mexico (NOAA and USGS, 2019b); and 5. Develop a searchable monitoring information portal/database to enable access to collected information and products.

Alabama, Florida, Georgia, Louisiana, Mississippi,↗

Vascular Plant and Vertebrate Inventory of Chiricahua National Monument

This report summarizes the results of the first comprehensive inventory of vascular plants and vertebrates at Chiricahua National Monument (NM) in Arizona. This project was part of a larger effort to inventory vascular plants and vertebrates in eight National Park Service units in the Sonoran Desert Network of parks in Arizona and New Mexico. In 2002, 2003, and 2004 we surveyed for plants and vertebrates (amphibians, reptiles, birds, and mammals) at Chiricahua NM to document the presence of species within the boundaries of the monument. Because we used repeatable study designs and standardized field methods, these inventories can serve as the first step in a biological monitoring program for the monument. This report is also the first summary of previous research from the monument and therefore it provides an important overview of survey efforts to date. We used data from our inventory and previous research to compile complete species lists for the monument and to assess inventory completeness. We recorded a total of 424 species, including 37 not previously found at the monument (Table 1). We found 10 species of non-native plants and one non-native mammal. Most non-native plants were found along the western boundary of the monument. Based on a review of our inventory and past research at the monument, there have been a total of 1,137 species of plants and vertebrates found at the monument. We believe the inventories of vascular plants and vertebrates are nearly complete and that the monument has one of the most complete inventories of any unit in the Sonoran Desert Network. The mammal community at the monument had the highest species richness (69 species) and the amphibian and reptile community was among the lowest species richness (33 species) of any park in the Sonoran Desert Network. Species richness of the plant and bird communities was intermediate. Among the important determinants of species richness for all groups is the geographic location of the monument at the intergrades between the Chihuahuan and Sonoran deserts with influences from the Great Plains and Madrean ecological provinces. The diversity of plants results from a wide variety of soil types and aspects (from cool, moist canyons to semi-desert grasslands to pine forests). In turn, the vertebrate communities respond to this diversity of vegetation, topography, and microsites. For example, for each taxonomic group we found that some species were only associated with a single community type, most often the riparian areas or semi-desert grasslands. The area of highest species richness for most groups was the western-most portion of Bonita Canyon. The low species richness observed in the amphibian and reptile community was likely because the monument is at the elevational edge of the more species-rich semi-desert grasslands. This report includes management implications from our work and suggestions for how the monument staff might better maintain or enhance the unique biological resources of the monument. We suggest additional inventory, monitoring, and research studies and we identify components of our effort that could be improved upon, either through the application of new techniques (e.g., establishment of vegetation monitoring plots) or by extending the temporal and/or spatial scope of our work.

Open-File Report↗

Geographic Names of Iceland's Glaciers: Historic and Modern

Climatic changes and resulting glacier fluctuations alter landscapes. In the past, such changes were noted by local residents who often documented them in historic annals; eventually, glacier variations were recorded on maps and scientific reports. In Iceland, 10 glacier place-names are to be found in Icelandic sagas, and one of Iceland's ice caps, Snaefellsjokull, appeared on maps of Iceland published in the 16th century. In the late 17th century, the first description of eight of Iceland's glaciers was written. Therefore, Iceland distinguishes itself in having a more than 300-year history of observations by Icelanders on its glaciers. A long-term collaboration between Oddur Sigurdsson and Richard S. Williams, Jr., led to the authorship of three books on the glaciers of Iceland. Much effort has been devoted to documenting historical glacier research and related nomenclature and to physical descriptions of Icelandic glaciers by Icelanders and other scientists from as far back as the Saga Age to recent (2008) times. The first book, Icelandic Ice Mountains, was published by the Icelandic Literary Society in 2004 in cooperation with the Icelandic Glaciological Society and the International Glaciological Society. Icelandic Ice Mountains was a glacier treatise written by Sveinn Palsson in 1795 and is the first English translation of this important scientific document. Icelandic Ice Mountains includes a Preface, including a summary of the history and facsimiles of page(s) from the original manuscript, a handwritten copy, and an 1815 manuscript (without maps and drawings) by Sveinn Palsson on the same subject which he wrote for Rev. Ebenezer Henderson; an Editor's Introduction; 82 figures, including facsimiles of Sveinn Palsson's original maps and perspective drawings, maps, and photographs to illustrate the text; a comprehensive Index of Geographic Place-Names and Other Names in the treatise; References, and 415 Endnotes. Professional Paper 1746 (this book) is the second of the three books; it is being published in both English and Icelandic editions. This book provides information about all named glaciers in Iceland, historic and modern. Descriptions, with geographic coordinates, and bibliographic citations to all glacier place-names on published maps, books, and scientific articles are included. Maps, oblique aerial photographs, ground photographs, and satellite images document each of the 269 modern named glaciers of Iceland. The third book, Glaciers of Iceland, is Chapter D of the 11-chapter [volume] U.S. Geological Survey Professional Paper 1386-A-K. Chapter D includes a 1:500,000-scale Map of the Glaciers of Iceland; it is a comprehensive historical and modern review and assessment of what is currently known about glaciers in Iceland's eight Regional Glacier Groups from a review of the scientific literature and from analysis of maps and remotely sensed data (ground, airborne, and satellite); topics include geology and geography, climate and climate variability, types of glaciers, history of glacier variation (including the 21 surge-type glaciers), and frequency and magnitude of volcanic and lacustrine jokulhlaups.

Professional Paper↗