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USGS2005

The fishes of Buffalo National River, Arkansas, 2001-2003

During June through September 2001 and 2002, extensive fish community sampling was conducted at 29 sites within the boundaries of Buffalo National River. Samples were collected using backpack, tote barge, and boat electrofishing equipment. Kick seining also was used at all sites. To supplement these results, samples were collected in 2003 from less typical habitats and during other seasons of the year. Ten supplemental samples were collected from the Buffalo River and five samples were collected from tributaries of the Buffalo River. During the 3 years of sampling, 66 species of fish were collected or observed from the 42 sampling sites. Stonerollers, duskystripe shiners, longear sunfish, and rainbow darters were among the more abundant fish species at most sites. Each of these species is common and abundant throughout much of the Ozark Plateaus in creeks and small rivers. Other species (for example, banded sculpin, southern redbelly dace, orangethroat darter, and Ozark minnow) were among the more abundant species at other sites. These species prefer small- to medium-sized, springfed streams or small creeks. A preliminary list of species expected to occur at Buffalo National River provided by the National Park Service incorrectly listed 47 species because of incorrect species range or habitat requirements. Upon revising this list, the inventory yielded 66 of the 78 species (85 percent). Twelve additional species not collected in 2001-2003 may occur at Buffalo National River for two primary reasons--because the species had been collected previously at the park, or because the park occurs within the known species range and habitats found at the park are suitable for the species. Although no fish species collected from Buffalo National River are federally-listed threatened or endangered species, several species collected at Buffalo National River may be of special interest to National Park Service managers and others. Ten species are endemic to the Ozark Plateaus area and most of these ten are restricted to the White River Basin. For some species the Buffalo River is a population stronghold. The yoke darter and Ozark bass are especially abundant in the Buffalo River. In Arkansas, the Ozark shiner is most abundant in the Buffalo River and, although populations of Ozark shiners are declining in Arkansas, this is not typically the case in the Buffalo River. Data from 2001-2003 indicate that gilt darters currently (2005) are less common in the Buffalo River than during the 1970's. Populations of channel catfish (and any other fish species whose movements are inhibited by the cold water temperatures of the White River) may continue to decline without remedial efforts.

Scientific Investigations Report↗

USGS2005

Quantification of fish habitat in selected reaches of the Marmaton and Marais des Cygnes Rivers, Missouri

The U.S. Geological Survey, in cooperation with the Missouri Department of Conservation, undertook a study to quantify fish habitat by using relations between streamflow and the spatial and temporal distributions of fish habitat at five sites in the Marmaton and Marais des Cygnes Rivers in western Missouri. Twenty-six fish habitat categories were selected for nine species under varying seasonal (spring, summer, and fall), diel (summer day and night), and life-stage (spawning, juvenile, and adult) conditions. Physical habitat characteristics were determined for each category using depth, velocity, and channel substrate criteria. Continuous streamflow data were then combined with the habitat-streamflow relations to compile a habitat time series for each habitat category at each site. Fish habitat categories were assessed as to their vulnerability to habitat alteration based on critical life stages (spawning and juvenile rearing periods) and susceptibility to habitat limitations from dewatering or high flows. Species categories representing critical life stages with physical habitat limitations represent likely bottlenecks in fish populations. Categories with potential bottlenecks can serve as indicator categories and aid managers when determining the flows necessary for maintaining these habitats under altered flow regimes. The relation between the area of each habitat category and streamflow differed greatly between category, season, and stream reach. No single flow maximized selected habitat area for all categories or even for all species/category within a particular season at a site. However, some similarities were noted among habitat characteristics, including the streamflow range for which habitat availability is maximized and the range of streamflows for which a habitat category area is available at the Marmaton River sites. A monthly habitat time series was created for all 26 habitat categories at two Marmaton River sites. A daily habitat time series was created at three Marais des Cygnes River sites for two periods: 1941 through 1963 (pre-regulation) and 1982 through 2003 (post-regulation). The habitat category with the highest median area in spring was paddlefish (Polyodon spathula) with normalized areas of up to 2,000 square meters per 100 meters of stream channel. Flathead catfish (Pylodictis olivaris) habitat area generally was the category area most available in summer and fall. Differences in daily selected habitat area time series between pre- and post-regulation time periods varied by species/category and by site. For instance, whereas there was a decline in the distribution of spring spawning habitat for suckermouth minnow (Phenacobius mirabilis) and slenderhead darter (Percina phoxocephala) from pre- to post-regulation periods at all three sites, the 25 to 75 percentile habitat area substantially increased for paddlefish under post-regulation conditions. Potential habitat area for most species was maximized at the Marmaton River sites at flows of about 1 to 10 cubic meters per second, whereas median monthly streamflows ranged from less than 1 to 20 cubic meters per second depending on site and season. Paddlefish habitat was available beginning at higher flows than other categories (4 to 7 cubic meters per second) and also maximized at higher flows (greater than 50 to 100 cubic meters per second). Selected potential habitat area was maximized for most species at the Marais des Cygnes River sites at flows of about 1 to 50 cubic meters per second, whereas median monthly streamflows ranged from 4 to 55 cubic meters per second depending on site and season. The range of streamflows for which selected habitat area was available in summer and fall was substantially less at the channelized Marais des Cygnes River site when compared to the non-channelized sites, and, therefore, the susceptibility of categories to high-flow habitat limitations was greater at this site. The channelized reach was more unifor

Scientific Investigations Report↗

USGS2017

Lake levels and water quality in comparison to fish mercury body burdens, Voyageurs National Park, Minnesota, 2013–15

Within Voyageurs National Park in Minnesota, lake levels are controlled by a series of dams to support a variety of uses. Previous research indicates a link between these artificially maintained water levels, referred to as rule curves, and mercury concentrations in fish owing to the drying and rewetting of wetlands and other nearshore areas, which may release methylmercury into the water when inundated. The U.S. Geological Survey, National Park Service, and University of Wisconsin-La Crosse cooperated in a study to assess the importance of lake-level fluctuation and other factors affecting mercury concentrations in Perca flavescens (yellow perch) in the lakes of Voyageurs National Park. For this study, mercury body burdens were determined for young-of-the-year yellow perch collected from the large lakes within Voyageurs National Park during 2013–15. These mercury body burdens were compared to lake levels and water-quality constituents from the same period. Field properties and profiles of lake water quality indicated that Sand Point, Little Vermilion, and Crane Lakes were anoxic at times near the lake bottom sediments, where sulfate-reducing bacteria may convert mercury to methylmercury. The median dissolved sulfate concentration was highest in Crane Lake, the median total organic carbon concentration was highest in Sand Point Lake, and the median total phosphorus concentration was highest in Kabetogama Lake, all of which is consistent with previous research. All lakes had median chlorophyll a concentrations of 3.6 micrograms per liter or less with the exception of Kabetogama Lake, where the median concentrations were 4.3 micrograms per liter for the midlake sites and 7.1 micrograms per liter and 9.0 micrograms per liter for the nearshore sites. Mercury concentrations in sampled fish varied widely between years and among lakes, from 14.7 nanograms per gram in fish samples from Kabetogama Lake in 2015 to 178 nanograms per gram in fish samples from Crane Lake in 2014. Data from this study can be combined with ongoing hydrologic modeling studies to evaluate trends in the mercury body burden of fish and different water-level management scenarios prescribed by the 2000 Rule Curves and the 1970 Rule Curves.

Minnesota↗

USGS2017

Estimation of the groundwater resources of the bedrock aquifers at the Kettle Moraine Springs State Fish Hatchery, Sheboygan County, Wisconsin

Groundwater resources information was needed to understand regional aquifer systems and water available to wells and springs for rearing important Lake Michigan fish species at the Kettle Moraine Springs State Fish Hatchery in Sheboygan County, Wisconsin. As a basis for estimating the groundwater resources available, an existing groundwater-flow model was refined, and new groundwater-flow models were developed for the Kettle Moraine Springs State Fish Hatchery area using the U.S. Geological Survey (USGS) finite-difference code MODFLOW. This report describes the origin and construction of these groundwater-flow models and their use in testing conceptual models and simulating the hydrogeologic system. The study area is in the Eastern Ridges and Lowlands geographical province of Wisconsin, and the hatchery property is situated on the southeastern edge of the Kettle Moraine, a north-south trending topographic high of glacial origin. The bedrock units underlying the study area consist of Cambrian, Ordovician, and Silurian units of carbonate and siliciclastic lithology. In the Sheboygan County area, the sedimentary bedrock sequence reaches a thickness of as much as about 1,600 feet (ft). Two aquifer systems are present at the Kettle Moraine Springs State Fish Hatchery. A shallow system is made up of Silurian bedrock, consisting chiefly of dolomite, overlain by unconsolidated Quaternary-age glacial deposits. The glacial deposits of this aquifer system are the typical source of water to local springs, including the springs that have historically supplied the hatchery. The shallow aquifer system, therefore, consists of the unconsolidated glacial aquifer and the underlying bedrock Silurian aquifer. Most residential wells in the area draw from the Silurian aquifer. A deeper confined aquifer system is made up of Cambrian- and Ordovician-age bedrock units including sandstone formations. Because of its depth, very few wells are completed in the Cambrian-Ordovician aquifer system (COAS) near the Kettle Moraine Springs State Fish Hatchery. Three groundwater-flow models were used to estimate the water resources available to the hatchery from bedrock aquifers under selected scenarios of well placement and seasonal water requirements and subject to constraints on the effects of pumping on neighboring wells, local springs, and creeks. Model input data (recharge, water withdrawal, and boundary conditions) for these models were compiled from a number of data and information sources. The first model, named the “KMS model,” (KMS stands for Kettle Moraine Springs) is an inset model derived from a published USGS regional Lake Michigan Basin model and was constructed to simulate groundwater pumping from the semiconfined Silurian aquifer. The second model, named the “Pumping Test model,” was constructed to evaluate an aquifer pumping test conducted in the COAS as part of this project. The Pumping Test model was also used to simulate the local effects of 20 years of groundwater pumping from this deep bedrock aquifer for future hatchery operations. The third model, named the “LMB modified model,” is a version of the published Lake Michigan Basin (LMB) model that was modified with aquifer parameters refined in an area around the hatchery (approximately a 5-mile radius circle, corresponding to the area stressed by the aquifer pumping test). This LMB modified model was applied to evaluate regional effects of pumping from the confined COAS. The available Silurian aquifer groundwater resource was estimated using the KMS model with three scenarios—named “AllConstraints,” “Constraints2,” and “Constraints3”—that specified local water-level and flow constraints such as drawdown at nearby household wells, water levels inside pumping well boreholes, and flow in local streams and springs. Each scenario utilized the MODFLOW Groundwater Management Process (GWM) to select three locations from six candidate locations that provided the greatest combined flow while satisfying the constraints. The three constraint scenarios provided estimates of 430 gallons per minute (gal/min), 480 gal/min, and 520 gal/min pumping from three wells—AllConstraints, Constraints2, and Constraints3, respectively. The same three wells were selected for the scenarios that estimated 480 gal/min and 520 gal/min; the scenario that estimated 430 gal/min shared two of these same wells, but the third selected well was different. The available COAS groundwater resource was estimated by two scenarios with each conducted over a period of 20 years with the Pumping Test model and the LMB modified model . The Pumping Test model was used to simulate local effects of pumping, and the LMB modified model was used to simulate regional effects of pumping. The scenarios simulate a range of total and seasonal pumping rates potentially linked to site activities. Scenario 1 simulates two wells completed in the Cambrian-Ordovician aquifer system, each pumping for 8 months at 300 gal/min, followed by pumping for 4 months at 600 gal/min. The average yearly pumping rate of Scenario 1 is 800 gal/min. Scenario 2 simulates three wells completed in the Cambrian-Ordovician aquifer system pumping for 8 months at 200 gal/min, followed by pumping for 4 months at 500 gal/min. The average yearly pumping rate of Scenario 2 is 900 gal/min. The Pumping Test model simulations confirmed that drawdown in the boreholes of the pumping wells at the selected 2-well or 3-well rates will meet the desired condition that the pumping water level remains at least 100 ft above the highest Cambrian-Ordovician unit open to the well. The LMB modified model was used to evaluate the regional drawdown of the pumping from the confined COAS under the same 2-well and 3-well scenarios. At the nearest known existing COAS well, Campbellsport production well #4, the simulated drawdown for Scenario 1 after 20 years of cyclical pumping with two pumping wells averaging a total of 800 gal/min is 16.9 ft, whereas the simulated drawdown for Scenario 2 after 20 years of pumping with three pumping wells averaging a total of 900 gal/min is 19.0 ft. The total deep aquifer thickness at the Campbellsport location is on the order of 620 ft, meaning that the simulated drawdown for either scenario is about 3 percent of the confined aquifer thickness. The models developed as part of this project are archived in the project data release. The archive includes the model input and output files as well as MODFLOW source code and executables. ( Haserodt and others, 2017 ).

Wisconsin↗

USGS2018

Method comparisons for determining concentrations of metals in water samples used in studies of fish migratory histories

Signatures developed from metal concentrations in water and fish bony structures can be used to demonstrate migration of individual fish between connected water bodies. The U.S. Geological Survey (USGS), in cooperation with the National Park Service and the Missouri Department of Conservation, compared two protocols for collecting and analyzing water samples for concentrations of several metals commonly used to develop metal signatures. In 2015, paired seasonal water samples were collected in two study areas incorporating three National Park Service units; paired water samples were collected using USGS protocols and simpler research protocols. Metal concentrations obtained using USGS and research protocols were compared using t-tests, percent differences, and simple linear regression analyses. Graphical plots of median values and measured ranges were used to compare ratios of strontium to calcium (Sr:Ca) and barium to calcium (Ba:Ca) obtained using the different protocols among individual stations within the two study areas. For stations on the Mississippi and St. Croix Rivers, ranges in concentrations of calcium, barium, and strontium (obtained using USGS protocols) were compared between samples collected from 1995 through 2012 and samples collected in this study. Comparisons were used to evaluate the long-term stability of metal concentrations in the environment. Collectively, results presented in this report demonstrated that research protocols provided metal concentration data that were similar to data obtained using USGS protocols for all compared metals except manganese. Holding times of 6–33 weeks prior to filtration and analyses for samples collected using research protocols may have caused greater changes in manganese concentrations compared to other metals. Strontium, barium, and calcium are the metals most commonly used in studies of fish migration, and concentrations of these metals were similar using different protocols. However, rivers within each study area were more easily distinguished from each other using metal concentration data obtained using USGS protocols compared to data obtained using research protocols. Information presented in this report can be used to develop studies that use identified metal signatures in connected water bodies and bony fish structures to demonstrate fish migration.

Mississippi National River and Recreation Area, Na↗

USGS2026

Spatial and temporal trends of mercury in fish from Duck Valley Reservation Reservoirs, southwestern Idaho and northern Nevada, 2007–24

The Shoshone-Paiute (Sho-Pai) Tribes of the Duck Valley Reservation, Nevada, manage reservoirs that support commercial and recreational activities, including robust Oncorhynchus mykiss (rainbow trout) fisheries that attract anglers year-round. Reservoirs are common environments for methylation and bioaccumulation of mercury, which is a potent neurotoxin when elevated levels are consumed. The U.S. Geological Survey (USGS), in cooperation with the Sho-Pai Tribes, measured total mercury concentrations in the muscle tissue of rainbow trout from three Reservation reservoirs in Idaho and Nevada in 2007, 2009, 2013, and 2024. This report highlights spatial and temporal trends of mercury concentrations in rainbow trout in the Duck Valley Reservation reservoirs from 2007 through 2024, and presents limited data on other commonly consumed species, specifically Perca flavescens (yellow perch), Micropterus dolomieu (smallmouth bass), and Micropterus salmoides (largemouth bass). Mercury data are also presented for nearby sites and lower trophic level species. In 2024, two fish sampling methods were used and compared: biopsy muscle plugs and muscle fillets. Results show good agreement between mercury concentrations of biopsy and fillet muscle samples taken from the same fish, with most sample pairs differing by less than 20 percent, though biopsied fish had an unexpectedly high mortality rate. Mercury concentrations increased in Sheep Creek Reservoir during the study period, but no significant trend was observed in Mountain View Reservoir or Lake Billy Shaw. Only 1 rainbow trout out of 160 sampled in the Reservation reservoirs during the study period exceeded the U.S. Environmental Protection Agency’s recommended methylmercury criterion of 0.3 milligram per kilogram of wet weight (mg/kg ww). Largemouth bass, smallmouth bass, and yellow perch had higher mercury concentrations than rainbow trout and may pose a greater risk to consumers. Mercury concentrations in largemouth bass exceeded 0.3 mg/kg ww, although only two fish were sampled, both from Sheep Creek Reservoir. Fish consumption advisories on Tribal lands are determined by the Tribes, and these results may help Sho-Pai managers determine the mercury exposure risk to Tribal members and visiting anglers.

Idaho, Nevada↗

USGS2000

Concentrations of selected trace elements in fish tissue and streambed sediment in the Clark Fork-Pend Oreille and Spokane River basins, Washington, Idaho, and Montana, 1998

Fish tissue and bed sediment samples were collected from 16 stream sites in the Northern Rockies Intermontane Basins study area in 1998 as part of the U.S. Geological Survey National Water-Quality Assessment Program. Bed sediment samples were analyzed for 45 trace elements, and fish livers and sportfish fillets were analyzed for 22 elements to characterize the occurrence and distribution of these elements in relation to stream characteristics and land use activities. Nine trace elements of environmental concern—arsenic, cadmium, chromium, copper, lead, mercury, nickel, selenium, and zinc—were detected in bed sediment, but not all of these elements were detected in fish tissue. Trace-element concentrations were highest in bed sediment samples collected at sites downstream from significant natural mineral deposits and (or) mining activities. Arsenic, cadmium, copper, lead, mercury, and zinc in bed sediment at some sites were elevated relative to national median concentrations, and some concentrations were at levels that can adversely affect aquatic biota. Although trace-element concentrations in bed sediment exceeded various guidelines, no concentrations in sportfish fillets exceeded U.S. Environmental Protection Agency screening values for the protection of human health. Correlations between most trace-element concentrations in bed sediment and fish tissue (liver and fillet) were not significant (r<±0.50, p>0.05). Concentrations of arsenic, cadmium, copper, lead, mercury, nickel, selenium, and zinc in bed sediment were significantly correlated (r=0.53 to 0.88, p<0.05) with natural mineral deposits and mining activities, but concentrations in fish tissue generally were not correlated with these measures. Regression analysis between mine density and the sum of trace-element concentrations in bed sediment identified two statistically significant relations (r 2 =0.95 and 0.99, p<0.001) that corresponded to trace-element enrichment categories. These strong relations warrant further study using mine density as an explanatory variable to predict trace-element concentrations in bed sediment.

Idaho, Montana, Washington↗

USGS2001

Source identification and fish exposure for polychlorinated biphenyls using congener analysis from passive water samplers in the Millers River basin, Massachusetts

Measurements of elevated concentrations of polychlorinated biphenyls (PCBs) in fish and in streambed sediments of the Millers River Basin, Massachusetts and New Hampshire, have been reported without evidence of the PCB source. In 1999, an investigation was initiated to determine the source(s) of the elevated PCB concentrations observed in fish and to establish the extent of fish exposure to PCBs along the entire main stems of the Millers River and one of its tributaries, the Otter River. Passive samplers deployed for 2-week intervals in the water-column at 3 1 stations, during summer and fall 1999, were used to assess PCB concentrations in the Millers River Basin. The samplers concentrate PCBs, which diffuse from the water column through a polyethylene membrane to hexane (0.200 liters) contained inside the samplers. Only dissolved PCBs (likely equivalent to the bioavailable fraction) are subject to diffusion through the membrane. The summed concentrations of all targeted PCB congeners (summed PCB) retrieved from the samplers ranged from 1 to 8,000 nanograms per hexane sample. Concentration and congener-pattern comparisons indicated that the historical release of PCBs in the Millers River Basin likely occurred on the Otter River at the upstream margin of Baldwinville, Mass. Elevated water-column concentrations measured in a wetland reach on the Otter River downstream from Baldwinville were compatible with a conceptual model for a present-day (1999) source in streambed sediments, to which the PCBs partitioned after their original introduction into the Otter River and from which PCBs are released to the water now that the original discharge has ceased or greatly decreased. Two four-fold decreases in summed PCB concentrations in the Millers River, by comparison with the highest concentration on the Otter River, likely were caused by (1) dilution with water from the relatively uncontaminated upstream Millers River and (2) volatilization of PCBs from the Millers River in steep-gradient reaches. A relatively constant concentration of summed PCBs in the reach of the Millers River from river mile 20 to river mile 10 was likely a consequence of a balance between decreased volatilization rates in that relatively low-gradient reach and resupply of PCBs to the water column from contaminated streambed sediments. A second high-gradient reach from river mile 10 to the confluence of the Millers River with the Connecticut River also was associated with a decrease in concentration of water-column summed PCBs. Volatilization as a loss mechanism was supported by evidence in the form of slight changes of the congener pattern in the reaches where decreases occurred. Exposure of fish food webs to concentrations of dissolved PCBs exceeded the U.S. Environmental Protection Agency's water-quality criterion for PCBs throughout most of the Millers River and Otter River main stems. Because the apparent source of PCBs discharged was upstream on the Otter River, a large number of river miles downstream (more than 30 mi) had summer water-column PCB concentrations that would likely lead to high concentrations of PCBs in fish.

Water-Resources Investigations Report↗

USGS2001

Comparison of U.S. Geological Survey and Ohio Environmental Protection Agency fish-collection methods using the index of biotic integrity and modified index of well-being, 1996–97

The U.S. Geological Survey (USGS) and Ohio Environmental Protection Agency (OEPA) collected data on fish from 10 stream sites in 1996 and 3 stream sites in 1997 as part of a comparative study of fish community assessment methods. The sites sampled represent a wide range of basin sizes (ranging from 132–6,330 square kilometers) and surrounding land-use types (urban, agricultural, and mixed). Each agency used its own fish-sampling protocol. Using the Index of Biotic Integrity and Modified Index of Well-Being, differences between data sets were tested for significance by means of the Wilcoxon signed-ranks test ( α = 0.05). Results showed that the median of Index of Biotic Integrity differences between data sets was not significantly different from zero ( p = 0.2521); however, the same statistical test showed the median differences in the Modified Index of Well-Being scores to be significantly different from zero ( p = 0.0158). The differences observed in the Index of Biotic Integrity scores are likely due to natural variability, increased variability at sites with degraded water quality, differences in sampling methods, and low-end adjustments in the Index of Biotic Integrity calculation when fewer than 50 fish were collected. The Modified Index ofWell-Being scores calculated by OEPA were significantly higher than those calculated by the USGS. This finding was attributed to the comparatively large numbers and biomass of fish collected by the OEPA. By combining the two indices and viewing them in terms of the percentage attainment of Ohio Warmwater Habitat criteria, the two agencies’ data seemed comparable, although the Index of Biotic Integrity scores were more similar than the Modified Index of Well-Being scores.

Michigan, New York, Ohio, Pennsylvania↗

USGS2003

Trends in concentrations of polychlorinated biphenyls in fish tissue from selected sites in the Delaware River basin in New Jersey, New York, and Pennsylvania, 1969-98

Polychlorinated biphenyl (PCB) concentrations in fish tissue collected during the 1990's from selected sites in the Delaware River Basin were compared with concentrations in fish tissue collected during 1969-88. Data collected by State and Federal agencies on concentrations in whole-body common carp ( Cyprinus carpio ) and white sucker ( Catostomus commersoni ), and edible portions of American eel ( Anguilla rostrata ), smallmouth bass ( Micropterus dolomieu ), and channel catfish ( Ictalurus punctatus ) during 1969-98 were compiled to define temporal trends in concentrations of PCBs in fish tissue from selected segments of the Delaware River, Lehigh River, Schuylkill River, and Brandywine Creek. The Delaware River in the vicinity of Trenton, New Jersey and Yardley, Pennsylvania (above the tidal influence) had the largest long-term data set among the sites considered for this study and was the only site with sufficient data for statistical analysis. A general pattern of decline in PCB concentrations during 1969-98 was apparent for this river segment. PCB concentrations in whole-body white sucker from this lower Delaware River segment declined during 1969-98 from a highest concentration of 7 micrograms per gram ( μ g/g, wet weight) in a sample collected during 1972 to 0.26 μ g/g (wet weight) in a sample collected during 1998. PCB concentration was negatively correlated with year (Spearman rank correlation -0.46, p < 0.08, n = 15); especially after removal of a sample from 1977 with an unusually low concentration (Spearman rank correlation -0.53, p = 0.05, n = 14). PCB concentrations in edible flesh of American eel declined during 1975-95, from a highest concentration of 3.8 μ g/g (wet weight) in a sample collected during 1976 to less than the reporting limit of 0.26 μ g/g (wet weight) in samples collected during 1993 and 1995. PCB concentrations in most samples (for species considered in this study) collected from the lower Delaware River exceeded the National Academy of Sciences and National Academy of Engineering (NAS/NAE) wildlife guideline level of 0.5 μ g/g during the 1970's and 1980's, and decreased to below this level during the 1990's. No samples of edible portions of game fish exceeded the U.S. Food and Drug Administration (FDA) tolerance level by the mid 1980's. However, the PCB concentration in a smallmouth bass fillet sample that was collected during 1998 (0.37 μ g/g) exceeded the Pennsylvania fish-consumption advisory level of 0.06 μ g/g, and the concentrations in whole-body common carp and white sucker collected during 1998 (1.10 μ g/g and 0.26 μ g/g, respectively) exceeded the New York State Department of Environmental Conservation wildlife criterion concentration of 0.11 μ g/g. (The concentration in carp also exceeded the 1973 NAS/NAE wildlife guideline concentration of 0.5 μ g/g.) Graphical analysis of PCB concentrations in whole white sucker and (or) edible portions of American eel from the upper Delaware River, lower Delaware River, middle Schuylkill River, and Brandywine Creek indicate a decline from the 1970's and (or) 1980's to the middle to late 1990's. Temporal trends in PCB concentrations in white sucker samples from the lower Lehigh and Schuylkill Rivers during 1979-98 are less clear; the PCB concentration (wet-weight basis) from a sample collected in 1998 from the lower Lehigh River was similar to that from a sample collected in 1979, and concentrations actually increased during 1982-98. Similarly, PCB concentrations in samples of white sucker and American eel from the lower Schuylkill River were highly variable over time.

New Jersey, New York, Pennsylvania↗

USGS2002

Effects of urbanization and long-term rainfall on the occurrence of organic compounds and trace elements in reservoir sediment cores, streambed sediment, and fish tissue from the Santa Ana River basin, California, 1998

Organcochlorine compounds, semivolatile-organic compounds (SVOC), and trace elements were analyzed in reservoir sediment cores, streambed sediment, and fish tissue in the Santa Ana River Basin as part of the U.S. Geological Survey's National Water-Quality Assessment Program. Three reservoirs were sampled in areas that have different degrees of urbanization. Streambed sediment and fish tissue collected at 12 sites were divided into two groups, urban and nonurban. More organochlorine compounds were detected in reservoir sediment cores, streambed sediment and fish tissue, and at higher concentrations at urban sites than at nonurban sites. At all sites, except West Street Basin, concentrations of organochlorine compounds were lower than the probable-effect concentration (PEC). At the highly urbanized West Street Basin, chlordane and p,p'-DDE exceeded the PEC throughout the historical record. The less stringent threshold-effect concentration (TEC) was exceeded for six compounds at eight sites. Most of the organochlorine compounds detected in streambed sediment and fish tissue were at urban sites on the Santa Ana River as opposed to its tributaries, suggesting accumulation and persistence in the river. More SVOCs were detected in reservoir sediment cores and streambed sediment, and at higher concentrations, at urban sites than at nonurban sites. At all the sites, except West Street Basin, concentrations of SVOCs were lower than the PEC. At West Street Basin, chrysene, pyrene, and total polycyclic-aromatic hydrocarbons exceeded the PEC throughout the historical record. The TEC was exceeded for 10 compounds at 3 sites. Most of the SVOCs were detected in streambed sediment at urban sites on tributaries to the Santa Ana River rather than the mainstem itself. The less frequent occurrence and lower concentrations in the Santa Ana River suggest that SVOCs are less persistent than organochlorine compounds, possibly as a result of volatization, gradation, or dilution. Most trace-element detections in reservoir sediment cores and streambed sediment were at urban sites, and the concentrations were generally higher than at nonurban sites. Lead and zinc exceeded their PECs at West Street Basin throughout the historical record; copper exceeded its PEC at Canyon Lake, an area of urban growth. The TEC was exceeded for 10 compounds at 11 sites. Frequency of detection and concentration did not differ between tributary and Santa Ana River sites, which may be attributed to the fact that trace elements occur naturally. Four trace elements (arsenic, copper, mercury, and selenium) had higher concentrations in fish tissue at nonurban sites than at urban sites. Concentrations decreased over time for organochlorine compounds at all three reservoirs, probably a result of the discontinued use of many of the compounds. Decreasing trends in SVOCs and trace elements were observed at West Street Basin, but increasing trends were observed at Canyon Lake. Concentrations of organochlorine compounds, SVOCs, and trace elements were higher during periods of above average rainfall at both West Street Basin and Canyon Lake.

Water-Resources Investigations Report↗

USGS2001

Water-Quality Assessment of part of the Upper Mississippi River Basin, Minnesota and Wisconsin— Organochlorine compounds in streambed sediment and fish tissues, 1995-97

Streambed sediments and fish tissues were collected in part of the Upper Mississippi River Basin to assess the presence and distribution of organochlorine compounds (OCs) including PCBs. A total of 13 OCs were detected among 14 of 27 streambed sediment sampling locations. In fish tissues analyzed, 9 OCs were detected among 17 of 24 sites sampled. Eight OCs were detected in both fish and streambed sediment samples, they were: cis-chlordane, o,p'-DDD; p,p'-DDD; p,p'-DDE; p,p'-DDT; hexachlorobenzene; transnonachlor; and PCBs. The most frequently detected OCs were: p,p'-DDE; and p,p'-DDD in streambed sediment and p,p'-DDE and PCBs in fish tissues. No OCs were detected in streambed sediment at agricultural sites; however, the agricultural sites had 17 detections of OCs in fish tissue. Urban streams had concentrations of total DDT and metabolites in streambed sediment that exceed guidelines for classification of sites with high probabilities of adverse effects to aquatic organisms. Total DDT was the only OC within an urban land use that exceeded guidelines for piscivorous wildlife.

Minnesota, Wisconsin↗

USGS1995

Aquatic communities and contaminants in fish from streams of the Red River of the North basin, Minnesota and North Dakota

Available data on the ecology of aquatic organisms in the Red River of the North Basin, a study unit of the U.S. Geological Survey's National Water-Quality Assessment program, were collated from numerous sources. Lack of information for invertebrates and algae precluded a general summary of distribution and ecology throughout the basin. Data on fish species distributions in the major streams of the Red River of the North Basin were analyzed based on the drainage area of the stream and the number of ecoregions the stream flowed through. Species richness increased with both drainage area (log drainage area in square kilometers, R 2 =0.41, p=0.0055) and the number of ecoregions a river flowed through. However, theses two factors are autocorrelated because the larger the drainage, the more likely that the river will flow through more than one ecoregion. A cluster analysis identified five river groups based on similarity of species within the fish community. Analysis of trophic and taxonomic composition provided justification for the cluster groups. There were significant differences (p=0.05) in the trophic composition of the river cluster groups with respect to the number of predator species, omnivore species, benthic insectivore species, and general insectivore species. Although there were no significant differences in the number of species in the bass and sunfish family or the sucker family, the number of species in the minnow family and the darter subfamily were different (p=0.05) among the groups identified by cluster analysis. Data on contaminant concentrations in fish from the Red River of the North indicated that most trace elements and organochlorine compounds present in tissues were not at levels toxic to fish or humans. Minnesota and North Dakota have issued a fish consumption advisory based on levels of mercury and (or) PCBs found in some species.

Minnesota, North Dakota, South Dakota↗

USGS1997

Fish communities of benchmark streams in agricultural areas of eastern Wisconsin

Fish communities were surveyed at 20 stream sites in agricultural areas in eastern Wisconsin in 1993 and 1995 as part of the National Water-Quality Assessment (NAWQA) Program. These streams, designated "benchmark streams," were selected for study because of their potential use as regional references for healthy streams in agricultural areas, based on aquatic communities, habitat, and water chemistry. The agricultural benchmark streams were selected from four physical settings, or relatively homogeneous units (RHU's), that differ in bedrock type, texture of surficial deposits, and land use. Additional data were collected along with the fish-community data, including measures of habitat, water chemistry, and population surveys of algae and benthic invertebrates. Of the 20 sites, 19 are classified as trout (salmonid) streams. Fish species that require cold or cool water were the most commonly collected. At least one species of trout was collected at 18 sites, and trout were the most abundant species at 13 sites. The species with the greatest collective abundance, and collected at 18 of the 20 sites, were mottled sculpin (Cottus bairdi), a coldwater species. The next most abundant species were brown trout (Salmo trutta), followed by brook trout (Salvelinusfontinalis), creek chub (Semotilus atromaculatus), and longnose dace (Rhinichthys cataractae). In all, 31 species of fish were collected. The number of species per stream ranged from 2 to 14, and the number of individuals collected ranged from 19 to 264. According to Index of Biotic Integrity (IBI) scores, 5 sites were rated excellent, 10 sites rated good, 4 rated fair, and 1 rated poor. The ratings of the five sites in the fair to poor range were low for various reasons. Two sites appeared to have more warmwater species than was ideal for a high-quality coldwater stream. One was sampled during high flow and the results may not be valid for periods of normal flow; the other may have been populated by migrating warmwater species. Two sites had insufficient deep-water habitat to support large numbers offish, especially top carnivores. Finally, one stream may be too cool to support enough warmwater species and too warm to support trout. In general, two methods of evaluating site habitat indicate that habitat is not a limiting factor for fish communities. However, two sites were rated as fair according to both habitat evaluation methods due to low base flow. Two sites rated below good according to one habitat evaluation method but rated good or excellent according to the other. Detrended correspondence analysis (DCA) of data for 17 sites showed three station groupings. These groupings fell along RHU divisions and each group was associated with one of three trout species. A species-richness gradient was evident on the station-ordination diagram. Intolerant species were associated with each grouping, a reflection of the generally high water quality at the sites. However, no significant differences were found between IBI scores or habitat indices among the site groupings. The DCA axis 1 and 2 scores correlated with average velocity and percent pool as well as RHU factors percent sandy surficial deposits, percent wetland, percent agriculture, and bedrock. Average velocity was highest at three sites which also had among the highest measured flow and largest drainage areas. Percent pool was generally lower at sites with smaller percentages of sandy surficial deposits, with one exception. The usefulness of ordination methods in conjunction with more traditional methods of defining biotic integrity (IB I) has been noted in previous studies. In this study, however, perhaps because of the relative homogeneity of the benchmark streams, the IBI did not correlate with the same kinds of factors as the DCA axis scores did.

Wisconsin↗

USGS2012

Heterogeneous detection probabilities for imperiled Missouri River fishes: implications for large-river monitoring programs

Occupancy modeling was used to determine (1) if detection probabilities (p) for 7 regionally imperiled Missouri River fishes (Scaphirhynchus albus, Scaphirhynchus platorynchus, Cycleptus elongatus, Sander canadensis, Macrhybopsis aestivalis, Macrhybopsis gelida, and Macrhybopsis meeki) differed among gear types (i.e. stationary gill nets, drifted trammel nets, and otter trawls), and (2) how detection probabilities were affected by habitat (i.e. pool, bar, and open water), longitudinal position (five 189 to 367 rkm long segments), sampling year (2003 to 2006), and season (July 1 to October 30 and October 31 to June 30). Adult, large-bodied fishes were best detected with gill nets (p: 0.02–0.74), but most juvenile large-bodied and all small-bodied species were best detected with otter trawls (p: 0.02–0.58). Trammel nets may be a redundant sampling gear for imperiled fishes in the lower Missouri River because most species had greater detection probabilities with gill nets or otter trawls. Detection probabilities varied with river segment for S. platorynchus, C. elongatus, and all small-bodied fishes, suggesting that changes in habitat influenced gear efficiency or abundance changes among river segments. Detection probabilities varied by habitat for adult S. albus and S. canadensis, year for juvenile S. albus, C. elongatus, and S. canadensis, and season for adult S. albus. Concentrating sampling effort on gears with the greatest detection probabilities may increase species detections to better monitor a population's response to environmental change and the effects of management actions on large-river fishes.

Endangered Species Research↗

USGS2003

Mobile fishing gear reduces benthic megafaunal production on Georges Bank

This study addresses the effect of mobile fishing gear disturbance on benthic megafaunal production on the gravel pavement of northern Georges Bank. From 1994 to 2000, we sampled benthic megafauna with a 1 m Naturalists' dredge at shallow (47 to 62 m) and deep (80 to 90 m) sites. The cessation of fishing in large areas of Georges Bank in January 1995 allowed us to monitor changes in production at a previously disturbed site. Production at a shallow disturbed site varied little over the sampling period (32 to 57 kcal m-2 yr-1) and was markedly lower than production at the nearby recovering site, where production increased from 17 kcal m-2yr -1 in 1994 before the closure to 215 kcal m-2 yr -1 in 2000. Atlantic sea scallops Placopecten magellanicus and green sea urchins Strongylocentrotus droebachiensis dominated production at the recovering site. The community production:biomass ratio decreased over time at the recovering site as the sea scallop population matured. At the deep sites, production remained significantly higher at undisturbed sites (174 to 256 kcal m-2 yr-1) than at disturbed sites (30 to 52 kcal m -2 yr-1). The soft-bodied tube-building polychaete Thelepus cincinnatus dominated production at the undisturbed site, while hard-shelled bivalve molluscs Astarte spp. and P. magellanicus were prevalent at the disturbed site. Mobile fishing gear disturbance has a conspicuous effect on benthic megafaunal production in this hard-bottom habitat. Cessation of mobile fishing has resulted in a marked increase in benthic megafaunal production. These findings should help fishery managers to gauge the costs and benefits of management tools such as area closures and low-impact fishing gears.

Georges Banks↗

USGS2021

Reconnecting the Elwha River: Spatial patterns of fish response to dam removal

The removal of two large dams on the Elwha River was completed in 2014 with a goal of restoring anadromous salmonid populations. Using observations from ongoing field studies, we compiled a timeline of migratory fish passage upstream of each dam. We also used spatially continuous snorkeling surveys in consecutive years before (2007, 2008) and after (2018, 2019) dam removal during summer baseflow to assess changes in fish distribution and density over 65 km of the mainstem Elwha River. Before dam removal, anadromous fishes were limited to the 7.9 km section of river downstream of Elwha Dam, potamodromous species could not migrate throughout the river system, and resident trout were the most abundant species. After dam removal, there was rapid passage into areas upstream of Elwha Dam, with 8 anadromous species (Chinook, Coho, Sockeye, Pink, Chum, Winter Steelhead, Summer Steelhead, Pacific Lamprey, and Bull Trout) observed within 2.5 years. All of these runs except Chum Salmon were also observed in upper Elwha upstream of Glines Canyon Dam within 5 years. The spatial extent of fish passage by adult Chinook Salmon and Summer Steelhead increased by 50 km and 60 km, respectively, after dam removal. Adult Chinook Salmon densities in some previously inaccessible reaches in the middle section of the river exceeded the highest densities observed in the lower section of the river prior to dam removal. The large number (>100) of adult Summer Steelhead in the upper river after dam removal was notable because it was among the rarest anadromous species in the Elwha River prior to dam removal. The spatial extent of trout and Bull Trout remained unchanged after dam removal, but their total abundance increased and their highest densities shifted from the lower 25 km of the river to the upper 40 km. Our results show that reconnecting the Elwha River through dam removal provided fish access to portions of the watershed that had been blocked for nearly a century.

Washington↗

USGS2023

Seven dam challenges for migratory fish: Insights from the Penobscot River

More than a century of impoundments in the Penobscot River, Maine, USA, has contributed to population declines in migratory fish in the system. A decade of change, research, and monitoring has revealed direct and indirect ways that dams have influenced the river habitat, connectivity for migratory fish, and the food web. The removal of two main-stem dams (in 2012 and 2013) and bolstering of fish passage have been part of coordinated restoration efforts in the watershed. Integral to this undertaking was support for short- and long-term monitoring and research that included physical habitat, fish passage, and broad scale ecological assessments. Herein we discuss the seven interconnected and complex ways that dams have affected the Penobscot River ecosystem, particularly for migratory fish. These include familiar influences ascribed to dams: i) impaired access to habitat, ii) injury and mortality, and iii) delays of migration. Other ecological influences are less studied and more subtle: iv) facilitation of predation, v) community shifts, and vi) demographic shifts. Lastly, dams result in vii) a loss of ecosystem services that would otherwise be intact in an unimpounded system. We draw on both direct examples from the Penobscot River and broader information to characterize how impoundments have transformed this ecosystem for more than a century. Recent dam removals and mitigation efforts have reestablished some of these ecological functions.

Maine↗