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At least 1,207 records · Page 67Linked to original sources
USGS2018

Understanding how microbiomes influence the systems they inhabit

Translating the ever-increasing wealth of information on microbiomes (environment, host, or built environment) to advance the understanding of system-level processes is proving to be an exceptional research challenge. One reason for this challenge is that relationships between characteristics of microbiomes and the system-level processes they influence are often evaluated in the absence of a robust conceptual framework and reported without elucidating the underlying causal mechanisms. The reliance on correlative approaches limits the potential to expand the inference of a single relationship to additional systems and advance the field. We propose that research focused on how microbiomes influence the systems they inhabit should work within a common framework and target known microbial processes that contribute to the system-level processes of interest. Here we identify three distinct categories of microbiome characteristics (microbial processes, microbial community properties, and microbial membership) and propose a framework to empirically link each of these categories to each other and the broader system level processes they affect. We posit that it is particularly important to distinguish microbial community properties that can be predicted from constituent taxa (community aggregated traits) from and those properties that are currently unable to be predicted from constituent taxa (emergent properties). Existing methods in microbial ecology can be applied to more explicitly elucidate properties within each of these categories and connect these three categories of microbial characteristics with each other. We view this proposed framework, gleaned from a breadth of research on environmental microbiomes and ecosystem processes, as a promising pathway with the potential to advance discovery and understanding across a broad range of microbiome science.

Nature Microbiology↗
USGS2026

Adaptive capacity of freshwater organisms in North America: Current understanding and future applications

Freshwater species are increasingly threatened by climate change, yet our ability to assess their vulnerability remains incomplete. Typically, climate change vulnerability assessments (CCVAs) evaluate three components: exposure, sensitivity, and adaptive capacity. Adaptive capacity, defined as the ability of a species to adjust to changing conditions, provides critical insight into how species may persist under future scenarios and can strengthen conservation planning by highlighting opportunities for resilience and targeted management strategies. Trait-based approaches offer a promising path for managers to operationalize adaptive capacity by identifying measurable biological and ecological traits that influence climate change response strategies. However, these insights are rarely integrated into broader vulnerability frameworks that support conservation decision making. We build on previous research to synthesize current understanding of adaptive capacity for three freshwater taxa in North America: fishes, mussels, and crayfishes. Our objectives were to: (1) assess the relevance of adaptive capacity factors for fishes, mussels, and crayfishes; (2) identify key opportunities and gaps in linking trait-based information into adaptive capacity assessments; and (3) illustrate how incorporating adaptive capacity can enhance management decisions for freshwater species under climate change. We used an expert workshop, literature review, and case studies to identify relevant adaptive capacity factors, assess available information, and evaluate inclusion in management contexts. We found that all three taxa had sufficient information to inform adaptive capacity assessments. In addition to existing adaptive capacity factors, we identified Morphology as an important yet underutilized cross-cutting diagnostic category when information was limited. By explicitly linking trait-based approaches with adaptive capacity frameworks, we offer practical guidance for improving climate adaptation strategies and prioritizing management actions for freshwater biodiversity under accelerating global change.

Global Change Biology Communications↗
USGS2006

Ecology of an estuarine mysid shrimp in the Columbia River (USA)

The estuarine mysid, Neomysis mercedis, has colonized John Day and other run-of-the-river Reservoirs of the Columbia River, over 400 km from the estuary. In John Day Reservoir N. mercedis numbers peaked (2 m-3) in August in areas near the dam in association with lower water velocity and softer bottom than at the upstream sampling sites. Neomysis broods were primarily released in late spring and early fall. Gut content analysis showed that Neomysis feeds mostly on cladoceran zooplankton and rotifers in John Day Reservoir. Diel vertical migration was documented, with daytime distribution restricted to the bottom and preferentially to the soft-textured sediments in the deepest areas. Common pelagic fishes in the reservoir, especially juvenile American shad (Alosa sapidissima) and chinook salmon (Oncorhynchus tshawytscha), are daytime zooplankton feeders that cannot prey on Neomysis owing to mysid diel vertical migration. Thus, Neomysis has become an important food web component in John Day Reservoir. We also collected N. mercedis further upstream in Lower Granite Reservoir, where another estuarine crustacean, Corophium salmonis, also is reported, underscoring the need to better understand the role of these estuarine invertebrates in the trophic ecology of the Columbia River. Copyright ?? 2006 John Wiley & Sons, Ltd.

Oregon, Washington↗
USGS2015

Western juniper management: assessing strategies for improving greater sage-grouse habitat and rangeland productivity

Western juniper ( Juniperus occidentalis subsp. occidentalis ) range expansion into sagebrush steppe ecosystems has affected both native wildlife and economic livelihoods across western North America. The potential listing of the greater sage-grouse ( Centrocercus urophasianus ) under the U.S. Endangered Species Act has spurred a decade of juniper removal efforts, yet limited research has evaluated program effectiveness. We used a multi-objective spatially explicit model to identify optimal juniper removal sites in Northeastern California across weighted goals for ecological (sage-grouse habitat) and economic (cattle forage production) benefits. We also extended the analysis through alternative case scenarios that tested the effects of coordination among federal agencies, budgetary constraints, and the use of fire as a juniper treatment method. We found that sage-grouse conservation and forage production goals are somewhat complementary, but the extent of complementary benefits strongly depends on spatial factors and management approaches. Certain management actions substantially increase achievable benefits, including agency coordination and the use of prescribed burns to remove juniper. Critically, our results indicate that juniper management strategies designed to increase cattle forage do not necessarily achieve measurable sage-grouse benefits, underscoring the need for program evaluation and monitoring.

California, Oregon, Nevada↗
USGS2011

Book review: World atlas of mangroves

Nearly 14 years have passed since the first atlas, World Mangrove Atlas (Spalding et al. 1997 ), was published. While scientists throughout the world have shared their insights about these ecosystems from a handful of “classic” mangrove ecology treatises, no book since has provided the same platform for understanding the global importance of mangroves by simply defining their distribution. The vast majority of mangrove research programs are modest in size and limited in funding. Nonetheless, much knowledge has been gained since the last atlas, including a potential role for mangroves in storm protection, proactive adjustment of soil surface elevation with sea-level rise, coastal water conservation, economic importance locally, etc. Furthermore, by documenting what can be lost, this book allows the reader to imagine what a world without mangroves might look like (see also Science 317, 41–42). If the first atlas established a mere image of an important wetland community type in peril, then this current edition paints a picture rivaling what an artist may have envisioned. The World Atlas of Mangroves is a comprehensive, well-written, ambitious, and artistic work that we can certainly recommend, and that should be part of any serious wetland library. Review info: World Atlas of Mangroves . By Spalding, M., M. Kainuma, and L. Collins, 2010. ISBN: 978-1844076574, 319 pp.

Wetlands↗
USGS2024

Enhanced microplastic fragmentation along human built structures in an urban waterway

Plastic pollution and microplastic (MP, 1 µm to 5 mm) generation are growing problems affecting the global community and a wide range of natural and disturbed environments. Urban and suburban waterways are directly impacted by plastic pollution due to their proximity to population centers and many different types single use plastic waste sources. In this study, plastic waste accumulation and fragmentation was investigated along the Cooper River in Camden County, NJ. Polymer composition was identified for individual plastic waste particles collected along the Cooper River using Fourier transform infrared (FTIR) spectrometry. Multiple human-built structures (Wallworth Lake, Evans Pond and Hopkins Pond dams) along the Cooper River were found to accumulate different types of plastic waste. The accumulation of plastic waste along these structures resulted in the initial stages of plastic fragmentation and the identification of large MP particles (1 to 5 mm). Quantitative analysis revealed that fragmented polystyrene (PS) particles constituted 82.8% of the total plastic fragments identified, most of which were identified at the Wallworth Lake dam. Many other types of fragmented plastic litter, including polyethylene and polypropylene, were identified at the Wallworth Lake dam, as well. This research demonstrates that engineered structures within urban and suburban aquatic ecosystems serve as significant aggregators of plastic debris, thereby catalyzing its breakdown into microplastics. Considering the escalating ecological and human health ramifications of microplastic proliferation, the fragmentation of plastic waste in an urban and suburban waterway observed in this study can also result in potentially toxic smaller MP particles, and increased exposure to aquatic organisms and humans.

New Jersey↗
USGS2025

Factors structuring macrofaunal communities of hydrocarbon seeps along the Cascadia margin

Cold seeps, fueled by hydrocarbon-based chemosynthesis, support unique benthic communities that can vary across small spatial scales influenced by local geochemistry. We examined the community structure and function of macrofauna in cold seeps along the Cascadia margin on the edge of gas hydrate stability—a dynamic environment that may fluctuate as seafloor temperatures change. These communities were assessed in relation to their sediment environment to provide baseline data for these previously uninvestigated seeps and decipher the most significant variables structuring them. Specific environmental drivers investigated include sediment organic carbon, total nitrogen, C:N ratios, stable isotopes (δ 13 C and δ 15 N), redox potential, grain size, and porefluid chemistry. Macrofaunal community composition varied across locations separating into twelve distinct clusters. Several co-located cores clustered separately, indicating high heterogeneity in these communities at small spatial scales. Significant drivers of macrofauna communities included clay and sand content, C:N, δ 15 N values, organic carbon content, and depth. Functional trait composition was influenced by similar drivers, including depth, δ 15 N values, C:N, and sand content. Our results indicate similar environmental variables structure macrofaunal community composition and function across small- and large-scale gradients, contributing to our understanding of heterogeneity in local and regional factors that shape seep macrofaunal communities. This is the first investigation of macrofauna at these recently discovered seeps and provides baseline data on the hydrate stability zone for future comparisons, advancing our knowledge of broad-scale trends in seep macrofauna ecology.

California, Oregon, Washington↗
USGS2009

Feeding ecology of lake whitefish larvae in eastern Lake Ontario

We examined the feeding ecology of larval lake whitefish ( Coregonus clupeaformis ) in Chaumont Bay, Lake Ontario, during April and May 2004-2006. Larvae were collected with towed ichthyoplankton nets offshore and with larval seines along the shoreline. Larval feeding periodicity was examined from collections made at 4-h intervals over one 24-h period in 2005. Inter-annual variation in diet composition (% dry weight) was low, as was spatial variation among collection sites within the bay. Copepods (81.4%), primarily cyclopoids (59.1%), were the primary prey of larvae over the 3-year period. Cladocerans (8.1%; mainly daphnids, 6.7%) and chironomids (7.3%) were the other major prey consumed. Larvae did not exhibit a preference for any specific prey taxa. Food consumption of lake whitefish larvae was significantly lower at night (i.e., 2400 and 0400 h). Substantial variation in diet composition occurred over the 24-h diel study. For the 24-h period, copepods were the major prey consumed (50.4%) and their contribution in the diet ranged from 29.3% (0400 h) to 85.9% (1200 h). Chironomids made up 33.4% of the diel diet, ranging from 8.0% (0800 h) to 69.9% (0400 h). Diel variation in the diet composition of lake whitefish larvae may require samples taken at several intervals over a 24-h period to gain adequate representation of their feeding ecology.

Journal of Great Lakes Research↗
USGS2021

NASA's surface biology and geology designated observable: A perspective on surface imaging algorithms

The 2017–2027 National Academies' Decadal Survey, Thriving on Our Changing Planet , recommended Surface Biology and Geology (SBG) as a “Designated Targeted Observable” (DO). The SBG DO is based on the need for capabilities to acquire global, high spatial resolution, visible to shortwave infrared (VSWIR; 380–2500 nm; ~30 m pixel resolution) hyperspectral (imaging spectroscopy) and multispectral midwave and thermal infrared (MWIR: 3–5 μm; TIR: 8–12 μm; ~60 m pixel resolution) measurements with sub-monthly temporal revisits over terrestrial, freshwater, and coastal marine habitats. To address the various mission design needs, an SBG Algorithms Working Group of multidisciplinary researchers has been formed to review and evaluate the algorithms applicable to the SBG DO across a wide range of Earth science disciplines, including terrestrial and aquatic ecology, atmospheric science, geology, and hydrology. Here, we summarize current state-of-the-practice VSWIR and TIR algorithms that use airborne or orbital spectral imaging observations to address the SBG DO priorities identified by the Decadal Survey: (i) terrestrial vegetation physiology, functional traits, and health; (ii) inland and coastal aquatic ecosystems physiology, functional traits, and health; (iii) snow and ice accumulation, melting, and albedo; (iv) active surface composition (eruptions, landslides, evolving landscapes, hazard risks); (v) effects of changing land use on surface energy, water, momentum, and carbon fluxes; and (vi) managing agriculture, natural habitats, water use/quality, and urban development. We review existing algorithms in the following categories: snow/ice, aquatic environments, geology, and terrestrial vegetation, and summarize the community-state-of-practice in each category. This effort synthesizes the findings of more than 130 scientists.

Remote Sensing of Environment↗
USGS2025

Sea star wasting disease mystery finally solved

A decade after a marine epidemic killed off sea stars and triggered ecosystem-wide effects along the Pacific Coast of North America, researchers have identified the bacterial pathogen that is responsible for sea star wasting disease.

Nature Ecology and Evolution↗
USGS2018

Ecosystem classification and mapping of the Laurentian Great Lakes

Owing to the enormity and complexity of the Laurentian Great Lakes, an ecosystem classification is needed to better understand, protect, and manage this largest freshwater ecosystem in the world. Using a combination of statistical analyses, published knowledge, and expert opinion, we identified key driving variables and their ecologically relevant thresholds and delineated and mapped aquatic systems for the entire Great Lakes. We identified and mapped 77 aquatic ecological units (AEUs) that depict unique combinations of depth, thermal regime, hydraulic, and landscape classifiers. Those 77 AEU types were distributed across 1997 polygons (patches) ranging from 1 to >48 000 km 2 in area and were most diverse in the nearshore (35 types), followed by the coastal margin (26), and then the offshore (16). Our classification and mapping of ecological units captures gradients that characterize types of aquatic systems in the Great Lakes and provides a geospatial accounting framework for resource inventory, status and trend assessment; research for ecosystem questions; and management and policy-making.

Laurentian Great Lakes↗
USGS2024

Threshold changes in winter temperature and precipitation drive threshold responses across nine global climate zones and associated biomes

Globally, winter temperatures are rising, and snowpack is shrinking or disappearing entirely. Despite previous research and published literature reviews, it remains unknown whether biomes across the globe will cross important thresholds in winter temperature and precipitation that will lead to significant ecological changes. Here, we combine the widely used Köppen–Geiger climate classification system with worst-case-scenario projected changes in global monthly temperature and precipitation to illustrate how multiple climatic zones across Earth may experience shifting winter conditions by the end of this century. We then examine how these shifts may affect ecosystems within corresponding biomes. Our analysis demonstrates potential widespread losses of extreme cold (<−20°C) in Arctic, boreal, and cool temperate regions. We also show the possible disappearance of freezing temperatures (<0°C) and large decreases in snowfall in warm temperate and dryland areas. We identify important and potentially irreversible ecological changes associated with crossing these winter climate thresholds.

Annual Review of Ecology, Evolution, and Systemati↗
USGS2004

The elusive baseline of marine disease: Are diseases in ocean ecosystems increasing?

Disease outbreaks alter the structure and function of marine ecosystems, directly affecting vertebrates (mammals, turtles, fish), invertebrates (corals, crustaceans, echinoderms), and plants (seagrasses). Previous studies suggest a recent increase in marine disease. However, lack of baseline data in most communities prevents a direct test of this hypothesis. We developed a proxy to evaluate a prediction of the increasing disease hypothesis: the proportion of scientific publications reporting disease increased in recent decades. This represents, to our knowledge, the first quantitative use of normalized trends in the literature to investigate an ecological hypothesis. We searched a literature database for reports of parasites and disease (hereafter “disease”) in nine marine taxonomic groups from 1970 to 2001. Reports, normalized for research effort, increased in turtles, corals, mammals, urchins, and molluscs. No significant trends were detected for seagrasses, decapods, or sharks/rays (though disease occurred in these groups). Counter to the prediction, disease reports decreased in fishes. Formulating effective resource management policy requires understanding the basis and timing of marine disease events. Why disease outbreaks increased in some groups but not in others should be a priority for future investigation. The increase in several groups lends urgency to understanding disease dynamics, particularly since few viable options currently exist to mitigate disease in the oceans.

PLoS Biology↗
USGS2019

The pathogenesis of H7 highly pathogenic avian influenza viruses in Lesser Scaup (Aythya affinis)

Waterfowl are the natural hosts of avian influenza virus (AIV), and through migration spread the virus worldwide. Most AIVs carried by wild waterfowl are low pathogenic strains; however, Goose/Guangdong/1996 lineage clade 2.3.4.4 H5 highly pathogenic (HP) AIV now appears to be endemic in wild birds in much of the Eastern Hemisphere. Most research efforts studying AIV pathogenicity in waterfowl thus far have been directed toward dabbling ducks. In order to better understand the role of diving ducks in AIV ecology, we previously characterized the pathogenesis of clade 2.3.4.4 H5 HPAIV in lesser scaup ( Aythya affinis ). In an effort to further elucidate AIV infection in diving ducks, the relative susceptibility and pathogenesis of two North American lineage H7 HPAIV isolates from the most recent outbreaks in the United States was investigated. Lesser scaup were inoculated with either A/turkey/IN/1403-1/2016 H7N8 or A/chicken/TN/17-007147-2/2017 H7N9 HPAIV by the intranasal route. The approximate 50% bird infectious dose (BID 50 ) of the H7N8 isolate was determined to be 10 3 50% egg infectious doses (EID 50 ), and the BID 50 of the H7N9 isolate was determined to be <10 2 EID 50 , indicating some variation in adaptation between the two isolates. No mortality or clinical disease was observed in either group except for elevated body temperatures at 2 and 4 days postinoculation (DPI). Virus shedding was detected up to 14 DPI from both groups, and there was a trend for shedding to have a longer duration and at higher titer levels from the cloacal route. These results demonstrate that lesser scaup are susceptible to both H7 lineages of HPAIV, and similar to dabbling duck species, they shed virus for long periods relative to gallinaceous birds and don't present with clinical disease.

Avian Diseases↗
USGS2021

Cooperative Fish and Wildlife Research Units program—2020 research abstracts

The U.S. Geological Survey (USGS) serves as the research arm of the U.S. Department of the Interior and has established a series of strategic goals that focus its efforts on serving the American people. Within the USGS, the Ecosystems Mission Area is responsible for conducting and sponsoring research that addresses the following thematic objectives under the overarching strategic goal of “Science that Supports Our Resources in Wild and Urban Spaces, and the Landscapes In-Between”: Science supporting a legacy of sustainable fish and wildlife, Social science and human components in land, water, and wildlife conservation, Trusted science supporting hard decisions on at-risk species, Science to battle costly biological threats, Providing science for managing risks and responding to extreme events, Science for preservation and restoration of iconic landscapes, and Science to support adaptation and address impacts of climate and land change. This report provides abstracts of most of the ongoing and recently completed research investigations of the USGS Cooperative Fish and Wildlife Research Units program. The report is organized by the following major science themes that contribute to the objectives of the USGS: Advanced Technologies Climate Science Decision Science Ecological Flows Ecosystem Services Energy Fish and Wildlife Health and Disease Human Dimensions Invasive Species Landscape Ecology Species and Habitat Management Species of Greatest Conservation Need Threatened and Endangered Species

Circular↗
USGS2006

Inhibition of coral recruitment by macroalgae and cyanobacteria

Coral recruitment is a key process in the maintenance and recovery of coral reef ecosystems. While intense competition between coral and algae is often assumed on reefs that have undergone phase shifts from coral to algal dominance, data examining the competitive interactions involved, particularly during the larval and immediate post-settlement stage, are scarce. Using a series of field and outdoor seawater table experiments, we tested the hypothesis that common species of macroalgae and cyanobacteria inhibit coral recruitment. We examined the effects of Lyngbya spp., Dictyota spp., Lobophora variegata (J. V. Lamouroux) Womersley, and Chondrophycus poiteaui (J. V. Lamouroux) Nam (formerly Laurencia poiteaui) on the recruitment success of Porites astreoides larvae. All species but C. poiteaui caused either recruitment inhibition or avoidance behavior in P. astreoides larvae, while L. confervoides and D. menstrualis significantly increased mortality rates of P. astreoides recruits. We also tested the effect of some of these macrophytes on larvae of the gorgonian octocoral Briareum asbestinum. Exposure to Lyngbya majuscula reduced survival and recruitment in the octocoral larvae. Our results provide evidence that algae and cyanobacteria use tactics beyond space occupation to inhibit coral recruitment. On reefs experiencing phase shifts or temporary algal blooms, the restocking of adult coral populations may be slowed due to recruitment inhibition, thereby perpetuating reduced coral cover and limiting coral community recovery. ?? Inter-Research 2006.

Marine Ecology Progress Series↗
USGS2013

Coral reef resilience through biodiversity

Irrefutable evidence of coral reef degradation worldwide and increasing pressure from rising seawater temperatures and ocean acidification associated with climate change have led to a focus on reef resilience and a call to “manage” coral reefs for resilience. Ideally, global action to reduce emission of carbon dioxide and other greenhouse gases will be accompanied by local action. Effective management requires reduction of local stressors, identification of the characteristics of resilient reefs, and design of marine protected area networks that include potentially resilient reefs. Future research is needed on how stressors interact, on how climate change will affect corals, fish, and other reef organisms as well as overall biodiversity, and on basic ecological processes such as connectivity. Not all reef species and reefs will respond similarly to local and global stressors. Because reef-building corals and other organisms have some potential to adapt to environmental changes, coral reefs will likely persist in spite of the unprecedented combination of stressors currently affecting them. The biodiversity of coral reefs is the basis for their remarkable beauty and for the benefits they provide to society. The extraordinary complexity of these ecosystems makes it both more difficult to predict their future and more likely they will have a future.

ISRN Oceanography↗
USGS1994

Workshop proceedings: research and management in whitebark pine ecosystems

The purpose of this workshop is to exchange information on on-going and soon-to-be-initiated whitebark pine research and management projects. By doing so we hope to encourage future work on this valuable species. We also hope to promote the use of consistent methods for evaluation and investigation of whitebark pine, and to provide avenues of collaboration. Speakers will present information on a variety of topics related to whitebark pine management and research. Featured presentation topics include anthropomorphic utilization of whitepark pine forests, whitebark pine natural regeneration, blister rust and the decline of whitebark pine, blister rust resistance studies, ecological mapping of the species, restoration and management projects, and survey/monitoring techniques. Information gained from these presentations may hopefully be used in the planning of future projects for the conservation of whitebark pine.

Book↗