Geology Reports⌕ Search

SEARCH · Geology Reports

Results for “Ecological Processes”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,207 records · Page 67Linked to original sources

Use of fish telemetry in rehabilitation planning, management, and monitoring in Areas of Concern in the Laurentian Great Lakes

Freshwater ecosystems provide many ecosystem services; however, they are often degraded as a result of human activity. To address ecosystem degradation in the Laurentian Great Lakes, Canada and the United States of America established the Great Lakes Water Quality Agreement (GLWQA). In 1987, 43 highly polluted and impacted areas were identified under the GLWQA as having one or more of 14 Beneficial Use Impairments (BUIs) to the physical and chemical habitat for fish, wildlife and humans, and were designated as Areas of Concern (AOC). Subnational jurisdictions combined with local stakeholders, with support from federal governments, developed plans to remediate and restore these sites. Biotelemetry (the tracking of animals using electronic tags) provides information on the spatial ecology of fish in the wild relevant to habitat management and stock assessment. Here, seven case studies are presented where biotelemetry data were directly incorporated within the AOC Remedial Action Plan (RAP) process. Specific applications include determining seasonal fish–habitat associations to inform habitat restoration plans, identifying the distribution of pollutant-indicator species to identify exposure risk to contamination sources, informing the development of fish passage facilities to enable fish to access fragmented upstream habitats, and assessing fish use of created or restored habitats. With growing capacity for fish biotelemetry research in the Great Lakes, we discuss the strengths and weaknesses of incorporating biotelemetry into AOC RAP processes to improve the science and practice of restoration and to facilitate the delisting of AOCs.

Great Lakes↗

Microbial community shifts influence patterns in tropical forest nitrogen fixation

The role of biodiversity in ecosystem function receives substantial attention, yet despite the diversity and functional relevance of microorganisms, relationships between microbial community structure and ecosystem processes remain largely unknown. We used tropical rain forest fertilization plots to directly compare the relative abundance, composition and diversity of free-living nitrogen (N)-fixer communities to in situ leaf litter N fixation rates. N fixation rates varied greatly within the landscape, and 'hotspots' of high N fixation activity were observed in both control and phosphorus (P)-fertilized plots. Compared with zones of average activity, the N fixation 'hotspots' in unfertilized plots were characterized by marked differences in N-fixer community composition and had substantially higher overall diversity. P additions increased the efficiency of N-fixer communities, resulting in elevated rates of fixation per nifH gene. Furthermore, P fertilization increased N fixation rates and N-fixer abundance, eliminated a highly novel group of N-fixers, and increased N-fixer diversity. Yet the relationships between diversity and function were not simple, and coupling rate measurements to indicators of community structure revealed a biological dynamism not apparent from process measurements alone. Taken together, these data suggest that the rain forest litter layer maintains high N fixation rates and unique N-fixing organisms and that, as observed in plant community ecology, structural shifts in N-fixing communities may partially explain significant differences in system-scale N fixation rates.

Oecologia↗

Chiroptera

With over 1200 species identified, bats represent almost one quarter of the world’s mammals. Bats provide crucial environmental services, such as insect control and pollination, and inhabit a wide variety of ecological niches on all continents except Antarctica. Despite their ubiquity and ecological importance, relatively little has been published on diseases of bats, while much has been written on bats’ role as reservoirs in disease transmission. This chapter will focus on diseases and pathologic processes most commonly reported in captive and free-ranging bats. Unique anatomical and histological features and common infectious and non-infectious diseases will be discussed. As recognition of both the importance and vulnerability of bats grows, particularly following population declines in North America due to the introduction of the fungal disease white-nose syndrome, efforts should be made to better understand threats to the health of this unique group of mammals.

Book chapter↗

Design of ecoregional monitoring in conservation areas of high-latitude ecosystems under contemporary climate change

Land ownership in Alaska includes a mosaic of federally managed units. Within its agency’s context, each unit has its own management strategy, authority, and resources of conservation concern, many of which are migratory animals. Though some units are geographically isolated, many are nevertheless linked by paths of abiotic and biotic flows, such as rivers, air masses, flyways, and terrestrial and aquatic migration routes. Furthermore, individual land units exist within the context of a larger landscape pattern of shifting conditions, requiring managers to understand at larger spatial scales the status and trends in the synchrony and spatial concurrence of species and associated suitable habitats. Results of these changes will determine the ability of Alaska lands to continue to: provide habitat for local and migratory species; absorb species whose ranges are shifting northward; and experience mitigation or exacerbation of climate change through positive and negative atmospheric feedbacks. We discuss the geographic and statutory contexts that influence development of ecological monitoring; argue for the inclusion of significant amounts of broad-scale monitoring; discuss the importance of defining clear programmatic and monitoring objectives; and draw from lessons learned from existing long-term, broad-scale monitoring programs to apply to the specific contexts relevant to high-latitude protected areas such as those in Alaska. Such areas are distinguished by their: marked seasonality; relatively large magnitudes of contemporary change in climatic parameters; and relative inaccessibility due to broad spatial extent, very low (or zero) road density, and steep and glaciated areas. For ecological monitoring to effectively support management decisions in high-latitude areas such as Alaska, a monitoring program ideally would be structured to address the actual spatial and temporal scales of relevant processes, rather than the artificial boundaries of individual land-management units. Heuristic models provide a means by which to integrate understanding of ecosystem structure, composition, and function, in the midst of numerous ecosystem drivers.

Alaska↗

Unravelling spatial heterogeneity of inundation pattern domains for 2D analysis of fluvial landscapes and drainage networks

Fluvial landscape analysis is an essential part of geomorphology, hydrology, ecology, and cartography. It is traditionally focused on the transition between hillslopes and channel domain, in which the network drainage is represented by static flow lines. However, the natural fluctuations of the processes occurring in the watershed induce lateral and longitudinal expansions and contractions in the drainage patterns and variations of stream surface area. These dynamics can be better understood by introducing a two-dimensional (2D) view of catchment hydrography, in which river width and floodplain are included in the analysis. The novelty introduced in this work is the development of a hydrodynamic hierarchical framework (HHF) to analyse the transitions among geomorphic and hydrographic features of the fluvial landscape, distinguishing hillslope, unchanneled valleys, floodplains, and single/multithreads channels. HHF is based on the estimation of nested inundation pattern domains (IPDs) from digital elevation models and 2D hydrodynamic modeling. IPDs are defined by scaling laws that characterize log–log relations between watershed drainage density and unit discharge thresholds extracted from a 2D direct rainfall method (DRM) under steady state solutions. The physical significance of the IPDs is analysed within the context of both the physiographic features of the fluvial landscape and the rainfall rates employed as input for the modeling approach. Initially, the spatial heterogeneity of the IPDs is used to derive stream width metrics as a function of the rainfall rate. Then, a spatial index, representative of the IPDs' heterogeneity, is introduced as a measure of the susceptibility of the drainage network surface area to expansion and contraction. Finally, the consistency of the results is assessed in comparison to another hydrodynamic-based method for fluvial landscape analysis recently proposed in the literature. The proposed approach is analysed using challenging mountain and low-relief environments, characterized by multithread channels, meander cut-offs, oxbow lakes, and extreme landscapes that feature glacial outwash, permafrost, and peatlands.

Alaska↗

A method to implement natural flow regimes for regulated rivers

Rivers throughout the world have been dammed for flood control, irrigation, hydropower, and water storage for centuries. Dams service the economic and development needs of societies, but degrade the ecology of rivers. To conserve diminishing aquatic species and their habitats, methods are needed to help managers implement flow releases with timescales and patterns that are relevant to aquatic species and physical processes. We present a method to synchronize flow releases from dams with local hydrology, while ensuring constraints of flood control and water allocations are met. We demonstrate an optimization technique that scales flows of a proximal unregulated river and results in discharges that are synchronized with natural hydrologic patterns. Importantly, our method preserves operational and regulatory requirements such as water allocation volumes and flood control thresholds. This technique can be used at various timescales, and can incorporate many system-specific constraints. We selected the Trinity River, California as an example, and scale flows according to a proximal gage on the Salmon River in California. We evaluate our technique using an array of flow regime metrics from the literature, and our method produced hydrographs with greater flow variation throughout a larger portion of the water year than current management strategies. These hydrographs yielded flow metrics more similar to those from unimpaired flow patterns, including those measuring within and among year flow variability. The Real Time Management framework is a new tool that can be implemented to improve the health of rivers and the aquatic species that depend upon them.

California↗

Circumpolar distribution and carbon storage of thermokarst landscapes

Thermokarst is the process whereby the thawing of ice-rich permafrost ground causes land subsidence, resulting in development of distinctive landforms. Accelerated thermokarst due to climate change will damage infrastructure, but also impact hydrology, ecology and biogeochemistry. Here, we present a circumpolar assessment of the distribution of thermokarst landscapes, defined as landscapes comprised of current thermokarst landforms and areas susceptible to future thermokarst development. At 3.6 × 10 6 km 2 , thermokarst landscapes are estimated to cover ∼ 20% of the northern permafrost region, with approximately equal contributions from three landscape types where characteristic wetland, lake and hillslope thermokarst landforms occur. We estimate that approximately half of the below-ground organic carbon within the study region is stored in thermokarst landscapes. Our results highlight the importance of explicitly considering thermokarst when assessing impacts of climate change, including future landscape greenhouse gas emissions, and provide a means for assessing such impacts at the circumpolar scale.

Nature Communications↗

Recognizing political influences in participatory social-ecological systems modeling

Stakeholder participation in social-ecological systems (SES) modeling is increasingly considered a desirable way to elicit diverse sources of knowledge about SES behavior and to promote inclusive decision-making in SES. Understanding how participatory modeling processes function in the context of long-term adaptive management of SES may allow for better design of participatory processes to achieve the intended outcomes of inclusionary knowledge, representativeness, and social learning, while avoiding unintended outcomes. Long-term adaptive management contexts often include political influences -- attempts to shift or preserve power structures and authority, and efforts to represent the political and economic interests of stakeholders -- in the computer models that are used to shape policy making and implementation. In this research, we examine a period that included a major transition in the watershed model used for management of the Chesapeake Bay in the United States. The Chesapeake Bay watershed model has been in development since the 1980s, and is considered by many to be an exemplary case of participatory modeling. We use documentary analysis and interviews with participants involved in the model application and development transition to reveal a variety of ways in which participatory modeling may be subject to different kinds of political influences, some of which resulted in unintended outcomes, including: perceptions of difficulty updating the model in substantive ways, “gaming” of the model/participatory process by stakeholders, and increasing resistance against considering uncertainty in the system not captured by the model. This research suggests unintended or negative outcomes may be associated with both participatory decision-making and stakeholder learning even though they are so often touted as the benefits of participatory modeling. We end with a hypothesis that further development of a theory of computer model governance to bridge model impact and broader theories of environmental governance at the science-policy interface may result in improved SES modeling outcomes.

Maryland, Virginia↗

The effects of management practices on grassland birds

Since the mid-1960s, populations of grassland birds have been declining more precipitously than any other group of birds in North America. These long-term declines highlight the need to better understand the habitat requirements of grassland birds and how management practices affect individual species and their habitats. Although resource managers have long recognized that every management approach contains inherent advantages and disadvantages, depending on the species in question, they are often faced with making critical management decisions armed with little or no information. The need for information on management and its effects on grassland birds was identified by the U.S. Prairie Pothole Joint Venture, a part of the North American Waterfowl Management Plan, in support of its objective to stabilize or increase populations of declining grassland- and wetland-associated wildlife species in the Prairie Pothole Region. In 1996, scientists from the U.S. Geological Survey’s Northern Prairie Wildlife Research Center began a long-term, collaborative effort to review and synthesize literature on the effects of management practices on grassland bird species. Major funding for this effort was provided by the Prairie Pothole Joint Venture, U.S. Fish and Wildlife Service, and the U.S. Geological Survey; additional funding was provided by the U.S. Forest Service, The Nature Conservancy, and the Plains and Potholes Landscape Conservation Cooperative. This compendium on “The Effects of Management Practices on Grassland Birds” is a culmination of that work. More than 6,000 published and unpublished publications have been consulted and several thousand publications have been incorporated and synthesized in species accounts for 40 North American grassland bird species. The 40 species represent a taxonomically diverse group that includes grouse, shorebirds, owls, diurnal raptors, and many songbirds. The focus of this effort is on management of breeding habitat, with an emphasis on the Great Plains. The accounts provide land managers with a summary of information on the effects of specific management practices on grassland birds and help to identify the most critical research gaps in our understanding of grassland bird ecology, habitat needs, and responses to management practices. This compendium is organized into three primary sections: an introduction, species accounts, and a concluding chapter. The introduction provides an overview of grasslands, the processes under which grasslands formed, the influence of anthropogenic changes to grasslands, the effects of those changes on grassland bird populations, and the management tools available to land managers. The bulk of this compendium is the individual species accounts, covering 40 species of North American grassland birds arranged in taxonomic order. Each species account includes information on species range, suitable breeding habitat, area requirements and landscape associations, breeding-season phenology, species’ response to management, and management recommendations. Information on rates of brood parasitism by the Brown-headed Cowbird ( Molothrus ater ) in grassland bird nests is summarized in a chapter at the end of this report. The final chapter includes concluding remarks concerning habitat requirements and management effects on grassland birds.

Professional Paper↗

Miscellaneous bacterial diseases

Disease in free-ranging birds is caused by many other pathogenic bacteria in addition to those illustrated within this section. These other diseases are currently considered less important because of their infrequent occurrence, the small numbers of birds generally lost annually, or because they primarily result from infection by opportunistic pathogens and they require concurrent disease processes for them to become apparent. The following brief highlights about the more important of these diseases are included to acquaint readers with their existence and provide some basic information about their ecology.

Information and Technology Report↗

Sharing knowledge to improve ecological restoration outcomes

Ecological restoration efforts are likely to be more successful when project components are informed by relevant stakeholders. However, key stakeholders are often not included in restoration design and deployment. This is largely driven by a lack of practitioner knowledge of and experience with stakeholder relations. However, inclusion of stakeholders across the entire restoration process can be accomplished by practitioners with no formal social science training. Here, we describe several easy (and usually inexpensive) ways to formally cultivate relationships among restoration practitioners, researchers, and stakeholders to improve restoration outcomes. These include: how to identify and work with stakeholders; how to recognize the unique needs and contributions of stakeholder groups, and how to provide information back to stakeholders through outreach. Although how this practice occurs is dependent on restoration context, integrating these approaches more regularly into ecological restoration projects will likely result in more successful, relevant, and community-supported management outcomes.

Restoration Ecology↗

Redox processes and water quality of selected principal aquifer systems

Reduction/oxidation (redox) conditions in 15 principal aquifer (PA) systems of the United States, and their impact on several water quality issues, were assessed from a large data base collected by the National Water-Quality Assessment Program of the USGS. The logic of these assessments was based on the observed ecological succession of electron acceptors such as dissolved oxygen, nitrate, and sulfate and threshold concentrations of these substrates needed to support active microbial metabolism. Similarly, the utilization of solid-phase electron acceptors such as Mn(IV) and Fe(III) is indicated by the production of dissolved manganese and iron. An internally consistent set of threshold concentration criteria was developed and applied to a large data set of 1692 water samples from the PAs to assess ambient redox conditions. The indicated redox conditions then were related to the occurrence of selected natural (arsenic) and anthropogenic (nitrate and volatile organic compounds) contaminants in ground water. For the natural and anthropogenic contaminants assessed in this study, considering redox conditions as defined by this framework of redox indicator species and threshold concentrations explained many water quality trends observed at a regional scale. An important finding of this study was that samples indicating mixed redox processes provide information on redox heterogeneity that is useful for assessing common water quality issues. Given the interpretive power of the redox framework and given that it is relatively inexpensive and easy to measure the chemical parameters included in the framework, those parameters should be included in routine water quality monitoring programs whenever possible.

Ground Water↗

Unravelling the influence of landscape alteration from flow alteration on benthic macroinvertebrate assemblage response in the Delaware River Basin

Quantifying the effects of streamflow alteration on assemblage response is central to understanding the role humans play in shaping aquatic environments. These changes represent a level of complexity that impedes developing quantitative links between flow and ecological response because stream hydrology is strongly intertwined with natural and anthropogenic factors. Better management outcomes require disentangling these linkages. Benthic macroinvertebrate data were combined with GIS-derived natural and anthropogenic basin characteristics to identify factors associated with changes in flow processes and assemblage characteristics. Models linking streamflow metrics and macroinvertebrate response at basin and subregion scales were developed using boosted regression tree (BRT) analysis. Basin-scale BRT analyses revealed that links between macroinvertebrate response and flow metrics were often obscured, whereas more homogeneous subregions were better able to discern relations with flow. Urban land cover was the primary factor accounting for changes in flow characteristics. Elevation, land cover, and high flow frequency were the principal variables driving changes in assemblage structure within subregions. Assemblage metrics and traits were equally useful for building response models and were affected similarly by streamflow alteration. Results indicate that response models should be developed based on upland and coastal subregions. However, when defining subregions, care should be taken to maintain data sufficiency. Developing practical flow-protection standards that support a balance between human water requirements and ecological integrity requires models that reduce uncertainty and identify management-relevant drivers. However, effective management often differs by location and models developed at the subregion level may be more applicable to management and stakeholder interests.

Delaware, New Jersey, New York, Pennsylvania↗

Can we save large carnivores without losing large carnivore science?

Large carnivores are depicted to shape entire ecosystems through top-down processes. Studies describing these processes are often used to support interventionist wildlife management practices, including carnivore reintroduction or lethal control programs. Unfortunately, there is an increasing tendency to ignore, disregard or devalue fundamental principles of the scientific method when communicating the reliability of current evidence for the ecological roles that large carnivores may play, eroding public confidence in large carnivore science and scientists. Here, we discuss six interrelated issues that currently undermine the reliability of the available literature on the ecological roles of large carnivores: (1) the overall paucity of available data, (2) reliability of carnivore population sampling techniques, (3) general disregard for alternative hypotheses to top-down forcing, (4) lack of applied science studies, (5) frequent use of logical fallacies, and (6) generalisation of results from relatively pristine systems to those substantially altered by humans. We first describe how widespread these issues are, and given this, show, for example, that evidence for the roles of wolves ( Canis lupus ) and dingoes ( Canis lupus dingo ) in initiating trophic cascades is not as strong as is often claimed. Managers and policy makers should exercise caution when relying on this literature to inform wildlife management decisions. We emphasise the value of manipulative experiments and discuss the role of scientific knowledge in the decision-making process. We hope that the issues we raise here prompt deeper consideration of actual evidence, leading towards an improvement in both the rigour and communication of large carnivore science.

Food Webs↗

Walden Pond, Massachusetts: Environmental setting and current investigations

Introduction Walden Pond, in Concord, Massachusetts, is famous among lakes because of its unique social history. Walden was the setting for American naturalist Henry David Thoreau's well-known essay 'Walden; or, Life in the Woods,' first published in 1854. Thoreau lived and wrote at Walden Pond from July 1845 to September 1847. In 'Walden,' Thoreau combined highly admired writing on Transcendental philosophy with pioneering observations of aquatic ecology and physical aspects of limnology, the study of lakes. Because Thoreau also defended so effectively the value of living close to nature in the Walden woods, the pond is considered by many to be the birthplace of the American conservation movement. Visitors come from all over the world to the pond, which has been designated a National Historic Landmark, and its fame has resulted in a major fund drive to preserve the surrounding woods. Walden Pond has no surfacewater inflow or outflow, and much of its ground-water contributing area likely is preserved within the Walden Pond Reservation area (fig. 1). Only 15 miles from Boston, the pond is unusually clear and pristine for an urban-area lake. However, point sources of nutrients near the pond, and a large annual visitor attendance, concentrated during the summer when the swimming beach (fig. 2) is open, may contribute a nutrient load sufficient to change the pond environment. The occurrence of nuisance algal species, a recent beach closing, and an awareness of water-quality problems suffered by other ponds in the region raise concerns about the risk of ecological change at Walden Pond. Despite the role of Walden Pond as a cultural and environmental icon, little is known about the pond's ecological features, such as its internal nutrient cycling or the structure of its food web, nor have consistent measurements been made to determine whether these features are changing or are stable. Production rates of aquatic plants in lakes and ponds naturally undergo a slow increase as plant nutrients, organic matter, and soil are leached and eroded from the surrounding watershed. This process is known as eutrophication. The term 'cultural eutrophication' refers to an accelerated form of the natural process in which extra soil and nutrients are derived from people's use of fertilizer, rerouting of surface drainage, and disposal of domestic and industrial waste. Cultural eutrophication can lead to excessive growth of aquatic plants, pond filling by decayed plants and eroded soils, reduced water clarity, and depletion of dissolved oxygen in deep water with subsequent loss of cold-water fish habitat. In order to document the longterm ecological health of Walden Pond, the U.S. Geological Survey (USGS), working in cooperation with the Massachusetts Department of Environmental Management (MDEM), is investigating factors that could contribute to cultural eutrophication of Walden. Through measurements of mass balance of nutrients and oxygen in the pond's deep water, the investigation will establish a baseline data set on Walden's trophic state, which is a measure of the pond's ability to support plant growth. The baseline data will be used to detect trends and give early warning of trophic changes or trophic response to pond remediation projects. This Fact Sheet provides background information on the environmental setting, limnological features, and cultural eutrophication of Walden Pond, and describes the joint USGS/MDEM study.

Massachusetts↗

Developing a 30-m grassland productivity estimation map for central Nebraska using 250-m MODIS and 30-m Landsat-8 observations

Accurately estimating aboveground vegetation biomass productivity is essential for local ecosystem assessment and best land management practice. Satellite-derived growing season time-integrated Normalized Difference Vegetation Index (GSN) has been used as a proxy for vegetation biomass productivity. A 250-m grassland biomass productivity map for the Greater Platte River Basin had been developed based on the relationship between Moderate Resolution Imaging Spectroradiometer (MODIS) GSN and Soil Survey Geographic (SSURGO) annual grassland productivity. However, the 250-m MODIS grassland biomass productivity map does not capture detailed ecological features (or patterns) and may result in only generalized estimation of the regional total productivity. Developing a high or moderate spatial resolution (e.g., 30-m) productivity map to better understand the regional detailed vegetation condition and ecosystem services is preferred. The 30-m Landsat data provide spatial detail for characterizing human-scale processes and have been successfully used for land cover and land change studies. The main goal of this study is to develop a 30-m grassland biomass productivity estimation map for central Nebraska, leveraging 250-m MODIS GSN and 30-m Landsat data. A rule-based piecewise regression GSN model based on MODIS and Landsat (r = 0.91) was developed, and a 30-m MODIS equivalent GSN map was generated. Finally, a 30-m grassland biomass productivity estimation map, which provides spatially detailed ecological features and conditions for central Nebraska, was produced. The resulting 30-m grassland productivity map was generally supported by the SSURGO biomass production map and will be useful for regional ecosystem study and local land management practices.

Nebraska↗

Forecasting selenium discharges to the San Francisco Bay-Delta Estuary: Ecological effects of a proposed San Luis Drain extension

Selenium discharges to the San Francisco Bay-Delta Estuary (Bay-Delta) could change significantly if federal and state agencies (1) approve an extension of the San Luis Drain to convey agricultural drainage from the western San Joaquin Valley to the North Bay (Suisun Bay, Carquinez Strait, and San Pablo Bay); (2) allow changes in flow patterns of the lower San Joaquin River and Bay-Delta while using an existing portion of the San Luis Drain to convey agricultural drainage to a tributary of the San Joaquin River; or (3) revise selenium criteria for the protection of aquatic life or issue criteria for the protection of wildlife. Understanding the biotransfer of selenium is essential to evaluating effects of selenium on Bay-Delta ecosystems. Confusion about selenium threats to fish and wildlife stem from (1) monitoring programs that do not address specific protocols necessary for an element that bioaccumulates; and (2) failure to consider the full complexity of the processes that result in selenium toxicity. Past studies show that predators are more at risk from selenium contamination than their prey, making it difficult to use traditional methods to predict risk from environmental concentrations alone. This report presents an approach to conceptualize and model the fate and effects of selenium under various load scenarios from the San Joaquin Valley. For each potential load, progressive forecasts show resulting (1) water-column concentration; (2) speciation; (3) transformation to particulate form; (4) particulate concentration; (5) bioaccumulation by invertebrates; (6) trophic transfer to predators; and (7) effects on those predators. Enough is known to establish a first-order understanding of relevant conditions, biological response, and ecological risks should selenium be discharged directly into the North Bay through a conveyance such as a proposed extension of the San Luis Drain. The approach presented here, the Bay-Delta selenium model, determines the mass, fate, and effects of selenium released to the Bay-Delta through use of (1) historical land-use, drainage, alluvial-fill, and runoff databases; (2) existing knowledge concerning biogeochemical reactions and physiological parameters of selenium (e.g., speciation, partitioning between dissolved and particulate forms, and bivalve assimilation efficiency); and (3) site-specific data mainly from 1986 to 1996 for clams and bottom-feeding fish and birds. Selenium load scenarios consider effluents from North Bay oil refineries and discharges of agricultural drainage from the San Joaquin Valley to enable calculation of (a) a composite freshwater endmember selenium concentration at the head of the estuary; and (b) a selenium concentration at a selected seawater location (Carquinez Strait) as a foundation for modeling. Analysis of selenium effects also takes into account the mode of conveyance for agricultural drainage (i.e., the San Luis Drain or San Joaquin River); and flows of the Sacramento River and San Joaquin River on a seasonal or monthly basis. Load scenarios for San Joaquin Valley mirror predictions made since 1955 of a worsening salt (and by inference, selenium) build-up exacerbated by an arid climate and massive irrigation. The reservoir of selenium in the San Joaquin Valley is sufficient to provide loading at an annual rate of approximately 42,500 pounds of selenium to a Bay-Delta disposal point for 63 to 304 years at the lower range of projections presented here, even if influx of selenium from the California Coast Ranges could be curtailed. Disposal of wastewaters on an annual basis outside of the San Joaquin Valley may slow the degradation of valley resources, but drainage alone cannot alleviate the salt and selenium build-up in the San Joaquin Valley, at least within a century. Load scenarios also show the different proportions of selenium loading to the Bay-Delta. Oil refinery loads from 1986 to 1992 ranged from 8.5 to 20 pounds of selenium per day; with treatment and cleanup, loads decreased to 3.0 pounds of selenium per day in 1999. In contrast, San Joaquin Valley agricultural drainage loads disposed of in a San Luis Drain extension could range from 45 to 117 pounds of selenium per day across a set of historical and future conditions. Components of this valley-wide load include five source subareas (i.e., Grassland, Westlands, Tulare, Kern, and Northern) defined by water and drainage management. Loads vary per subarea mainly because of proximity of the subarea to geologic sources of selenium and irrigation history. Loads from the Sacramento River, depending on flow conditions, range from 0.8 to 10 pounds of selenium per day. Loads from the San Joaquin River vary depending on restoration and flow conditions, which are considered. A consistent picture of ecological risk emerges under modeled selenium discharges from a proposed San Luis Drain extension. The threat to the estuary is greatest during low flow seasons and critically dry years. Where selenium undergoes reactions typical of low flow or longer residence time, highly problematic bioaccumulation in prey (food) is forecast. Surf scoter, greater and lesser scaup, and white sturgeon appear to be most at risk because these Bay-Delta predators feed on deposit and filter-feeding bivalves. Recent findings add Sacramento splittail and Dungeness crab to that list. During the low flow season of critically dry years, forecasted selenium concentrations in water, particulate matter, prey (diet), and predator tissue exceed guidelines with a high certainty of producing adverse effects under the most likely load scenario from a proposed San Luis Drain extension. High flows afford some protection under certain conditions in modeled San Joaquin River scenarios. However, meeting a combined goal of releasing a specific load during maximum flows and keeping selenium concentrations in the river below a certain objective to protect against bioaccumulation may not always be attainable. Management of the San Joaquin River on a constant concentration basis also could create problematic bioaccumulation during a wet year, especially during the low flow season, because high flows translate to high loads that are not always offset by seasonal river inflows. Prior to refinery cleanup, selenium contamination was sufficient to threaten reproduction in key species within the Bay-Delta ecosystems and human health advisories were posted based on selenium concentrations in tissues of diving ducks. During this time, selenium concentrations in the Bay-Delta were well below the most stringent recommended water quality criterion [1 microgram per liter (1 µg/L)]. Enhanced biogeochemical transformations to bioavailable particulate selenium and efficient bioaccumulation by bivalves characterized the system. If these biogeochemical conditions continue to prevail and agricultural selenium sources replace or exceed refinery sources, ecological forecasts suggest the risk of adverse effects will be difficult to eliminate under an out-of-valley resolution to the selenium problem. The Bay-Delta selenium model presented here is a systematic approach for conducting forecasts of the ecological effects from selenium on aquatic food webs. It is a new tool that links and models the major processes leading from loads through consumer organisms to predators. It also is a feasible approach for site-specific analysis and could provide a framework for developing new protective selenium foodweb guidelines and predator criteria. Model components that help ensure understanding ecosystems and the basis of environmental protection are (1) contaminant concentrations and speciation in sources, such as particulate material, that most influence bioavailability; (2) bioaccumulation models that calculate concentrations in diet, specifically in bivalves of the Bay-Delta that act as sensitive indicators of selenium contamination; (3) food-web type that determines what animals are threatened and when; and (4) multiple media concentrations (water, particulate material, and tissue of prey and predators) that, in-combination, determine risk or hazard.

California↗

Ecosystem ecology meets adaptive management: food web response to a controlled flood on the Colorado River, Glen Canyon

Large dams have been constructed on rivers to meet human demands for water, electricity, navigation, and recreation. As a consequence, flow and temperature regimes have been altered, strongly affecting river food webs and ecosystem processes. Experimental high‐flow dam releases, i.e., controlled floods, have been implemented on the Colorado River, USA, in an effort to reestablish pulsed flood events, redistribute sediments, improve conditions for native fishes, and increase understanding of how dam operations affect physical and biological processes. We quantified secondary production and organic matter flows in the food web below Glen Canyon dam for two years prior and one year after an experimental controlled flood in March 2008. Invertebrate biomass and secondary production declined significantly following the flood (total biomass, 55% decline; total production, 56% decline), with most of the decline driven by reductions in two nonnative invertebrate taxa, Potamopyrgus antipodarum and Gammarus lacustris . Diatoms dominated the trophic basis of invertebrate production before and after the controlled flood, and the largest organic matter flows were from diatoms to the three most productive invertebrate taxa ( P. antipodarum , G. lacustris , and Tubificida). In contrast to invertebrates, production of rainbow trout ( Oncorhynchus mykiss ) increased substantially (194%) following the flood, despite the large decline in total secondary production of the invertebrate assemblage. This counterintuitive result is reconciled by a post‐flood increase in production and drift concentrations of select invertebrate prey (i.e., Chironomidae and Simuliidae) that supported a large proportion of trout production but had relatively low secondary production. In addition, interaction strengths, measured as species impact values, were strongest between rainbow trout and these two taxa before and after the flood, demonstrating that the dominant consumer–resource interactions were not necessarily congruent with the dominant organic matter flows. Our study illustrates the value of detailed food web analysis for elucidating pathways by which dam management may alter production and strengths of species interactions in river food webs. We suggest that controlled floods may increase production of nonnative rainbow trout, and this information can be used to help guide future dam management decisions.

Arizona↗