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At least 1,189 records · Page 66Linked to original sources
USGS1957

The control of the upstream movement of fish with pulsated direct current

Alternating-current electromechanical devices installed in the mouths of streams have proved effective in stopping the spawning migrations of the parasitic sea lamprey (Petromyzon marinus) which has seriously damaged Great Lakes fisheries. In a few streams, excessive mortality has occurred to other fish at the alternating-current barriers. A direct-current unit was developed in an attempt to reduce this mortality. This direct-current “diversion device” consists of a row of suspended negative electrodes which begins at the end of a trap wing and extends across the river at a downstream angle of 45° and a series of pipes (positive electrodes) driven into the stream bank. A second array, consisting of horizontal pipes installed downstream and parallel to the suspended electrodes and connected to a series of rods driven into the bank near the positive electrodes, controls the electrical field and dissipates the collecting influence of the positive side of the circuit. The electrical field is established from the end of the trap wing to the opposite bank. Fish are diverted away from the negative electrodes and toward the bank near which the trap is located. The array is activiated by pulsated direct current of essentially square wave shape with pulses at a duty cycle of 0.66 and a repetition rate of 3 per second. Direct-current diversion devices were operated in conjunction with alternating-current barriers during 1956 in the Chocolay River, Marquette County, and the Silver River, Baraga County, Michigan. A total of 15,814 fish comprising 21 species was handled at the Chocolay River with a mortality of 930, or 5.9 percent. If mortalities of fish moving downstream are disregarded, only 287, or 1.9 percent, of the fish moving upstream were killed in the Chocolay River. In the Silver River, 78,648 fish comprising 21 species were taken from the trap of the direct-current diversion device. The total kill of fish moving upstream, including 289 sea lampreys, was 1,016, or 1.3 percent. This river had presented a serious problem in the operation of an alternating-current control device during previous seasons. In 1955, 85.5 percent of three important species of fish were killed at the control structure. During 1956, this mortality was reduced to 8.1 percent by the operation of the direct-current equipment.

Transactions of the American Fisheries Society↗
USGS2016

Antigenic characterization of H3 subtypes of avian influenza A viruses from North America

Besides humans, H3 subtypes of influenza A viruses (IAVs) can infect various animal hosts, including avian, swine, equine, canine, and sea mammal species. These H3 viruses are both antigenically and genetically diverse. Here, we characterized the antigenic diversity of contemporary H3 avian IAVs recovered from migratory birds in North America. Hemagglutination inhibition (HI) assays were performed on 37 H3 isolates of avian IAVs recovered from 2007 to 2011 using generated reference chicken sera. These isolates were recovered from samples taken in the Atlantic, Mississippi, Central, and Pacific waterfowl migration flyways. Antisera to all the tested H3 isolates cross-reacted with each other and, to a lesser extent, with those to H3 canine and H3 equine IAVs. Antigenic cartography showed that the largest antigenic distance among the 37 avian IAVs is about four units, and each unit corresponds to a 2 log 2 difference in the HI titer. However, none of the tested H3 IAVs cross-reacted with ferret sera derived from contemporary swine and human IAVs. Our results showed that the H3 avian IAVs we tested lacked significant antigenic diversity, and these viruses were antigenically different from those circulating in swine and human populations. This suggests that H3 avian IAVs in North American waterfowl are antigenically relatively stable.

Avian Diseases↗
USGS2025

DNA metabarcoding of biocrust lichen-forming fungi detects responses to disturbance and invasion

Biocrusts dominated by bryophytes and lichens perform important functions in dryland ecosystems but monitoring these communities can be cost prohibitive over broad scales. We explored DNA metabarcoding as a potential tool for monitoring biocrust lichen communities at a site in Washington (U.S.A.) that had already been surveyed for lichen diversity and community composition. We developed a DNA reference library using the internal transcribed spacer (ITS) region from specimens collected in the study area. We also visually estimated the abundance of lichen species or groups in 22 plots spanning a range of wildfire history and invasion by the exotic annual grass Bromus tectorum . At these plots, we collected bulk lichen community samples for metabarcoding using two approaches: small sample dishes and combined biocrust fragments collected using tweezers from all species observed. We used PacBio sequencing to simultaneously generate ITS barcode sequences for all lichen-forming fungi (LFF) present in the bulk samples, clustering similar sequences into operational taxonomic units (OTUs). Lichen communities detected visually and using DNA metabarcoding both captured a reduction of biocrust diversity and change in community composition related to the abundance of B. tectorum , suggesting that metabarcoding was able to identify the same dominant ecological pattern in biocrust lichens as visual sampling. The tweezer sampling approach captured on average 12.3 more OTUs than the dish approach and some taxa were more consistently detected by one approach or the other. After using the specimen DNA reference library to identify species associated with LFF OTUs, we determined that metabarcoding and visual sampling detected overlapping but different lichen species. Metabarcoding failed to detect common collected taxa, including: Arthonia glebosa, Candelariella spp ., Enchylium tenax, Lecanora muralis, Lecidella spp ., Leptochidium albociliatum, Massalongia carnosa, and Trapeliopsis glaucopholis. However, metabarcoding detected OTUs not visually observed in the genera Elixia, Lecanora, Lecanoropsis, Bacidina, Pyrenodesmia, Xanthocarpia, Trapelia, Verrucaria, and Verruculopsis . Furthermore, metabarcoding identified greater OTU diversity than expected within Diploschistes muscorum, Trapeliopsis bisorediata, and Trapeliopsis steppica . Our results suggest that metabarcoding alone or combined with visual methods could be a useful approach for monitoring biocrust lichen communities and their response to disturbance, invasion, and potential restoration.

Washington↗
USGS2015

Morphological divergence in a continental adaptive radiation: South American ovenbirds of the genus Cinclodes

Cinclodes is an ecologically diverse genus of South American passerine birds and represents a case of continental adaptive radiation along multiple axes. We investigated morphological diversification in Cinclodes using a comprehensive set of morphometric measurements of study skins. Principal component analysis identified 2 primary axes of morphological variation: one describing body size and a second capturing differences in wing-tip shape and toe length. Phylogenetic analyses of the first principal component suggest an early divergence of Cinclodes into 2 main clades characterized by large and small body sizes. We suggest that 2 morphological outliers within these main clades ( C. antarcticus and C. palliatus ) may be cases of island gigantism and that a third ( C. patagonicus ) may reflect ecological character displacement. Despite its ecological and physiological diversity, the genus Cinclodes does not appear to show morphological diversity beyond what is typical of other avian genera.

The Auk↗
USGS2002

Microsatellite DNA and mitochondrial DNA variation in remnant and translocated sea otter ( Enhydra lutris ) populations

All existing sea otter ( Enhydra lutris ) populations have suffered at least 1, and in some cases 2, population bottlenecks. The 1st occurred during the 18th and 19th centuries as a result of commercial hunting that eliminated sea otters from much their native range and reduced surviving populations to small remnants. The 2nd bottleneck occurred when small numbers of otters were reintroduced, via translocation, to areas where the species had been eliminated. We examined genetic variation at 7 microsatellite loci and the mitochondrial DNA (mtDNA) control region in 3 remnant populations, Amchitka Island (Aleutian Islands, Alaska), central coastal California, and Prince William Sound (Alaska), and in 2 reintroduced populations, southeast Alaska and Washington, that were founded with transplants from Amchitka, and in the case of southeast Alaska, individuals from Prince William Sound as well. We found no evidence of reduced genetic diversity in translocated populations. Average expected microsatellite heterozygosities ( H E ) were similar in all populations (range, 0.40–0.47), and mtDNA haplotype diversities were higher in reintroduced populations (0.51 for both Washington and southeast Alaska) than in remnant populations ( X̄ = 0.35; range, 0.18–0.45). The levels of genetic diversity we observed within sea otter populations were relatively low when compared with other mammals and are thought to be the result of fur trade exploitation.

Alaska, California, Washington↗
USGS2003

Mitochondrial phylogeography of moose (Alces alces) in North America

Nucleotide variation was assessed from the mitochondrial control region of North American moose ( Alces alces ) to test predictions of a model of range expansion by stepping-stone dispersal and to determine whether patterns of genetic variation support the current recognition of 4 subspecies. Haplotypes formed a star phylogeny indicative of a recent expansion of populations. Values of nucleotide and haplotype diversity were low continentwide but were greatest in the central part of the continent and lowest in peripheral populations. Despite low mitochondrial diversity, moose exhibited a high degree of differentiation regionally, which was not explained by isolation by distance. Our data indicate a pattern of colonization consistent with a large central population that supplied founders to peripheral populations (other than Alaska), perhaps through rare, long-distance dispersal events (leptokurtic dispersal) rather than mass dispersal by a stepping-stone model. The colonization scenario does not account for the low haplotype diversity observed in Alaska, which may be derived from a postcolonization bottleneck. Establishment of peripheral populations by leptokurtic dispersal and subsequent local adaptation may have been sufficient for development of morphological differentiation among extant subspecies.

Journal of Mammalogy↗
USGS2005

Southern marl prairies conceptual ecological model

About 190,000 ha of higher-elevation marl prairies flank either side of Shark River Slough in the southern Everglades. Water levels typically drop below the ground surface each year in this landscape. Consequently, peat soil accretion is inhibited, and substrates consist either of calcitic marl produced by algal periphyton mats or exposed limestone bedrock. The southern marl prairies support complex mosaics of wet prairie, sawgrass sawgrass ( Cladium jamaicense ), tree islands, and tropical hammock communities and a high diversity of plant species. However, relatively short hydroperiods and annual dry downs provide stressful conditions for aquatic fauna, affecting survival in the dry season when surface water is absent. Here, we present a conceptual ecological model developed for this landscape through scientific consensus, use of empirical data, and modeling. The two major societal drivers affecting the southern marl prairies are water management practices and agricultural and urban development. These drivers lead to five groups of ecosystem stressors: loss of spatial extent and connectivity, shortened hydroperiod and increased drought severity, extended hydroperiod and drying pattern reversals, introduction and spread of non-native trees, and introduction and spread of non-native fishes. Major ecological attributes include periphyton mats, plant species diversity and community mosaic, Cape Sable seaside sparrow ( Ammodramus maritimus mirabilis ), marsh fishes and associated aquatic fauna prey base, American alligator ( Alligator mississippiensis ), and wading bird early dry season foraging. Water management and development are hypothesized to have a negative effect on the ecological attributes of the southern marl prairies in the following ways. Periphyton mats have decreased in cover in areas where hydroperiod has been significantly reduced and changed in community composition due to inverse responses to increased nutrient availability. Plant species diversity and community mosaics have changed due to shifting gradients to more terrestrial or more aquatic communities, displacement of native communities by non-natives, expansion of woody plants, high-intensity dry season fires, tree-island burnout, and reduced microtopography resulting from alligator population decline. Cape Sable seaside sparrow populations are threatened by nest destruction resulting from extended hydroperiods, drying pattern reversals, and high intensity dry season fires, as well as by the expansion of woody plants into graminoid wetland habitats. Populations of marsh fishes and associated aquatic fauna that constitute the aquatic prey base for higher vertebrates have decreased in density and changed in species composition and size structure due to loss of wetland spatial extent, shortened hydroperiod, increased drought severity, loss of aquatic drought refugia in solution holes and alligator holes, and spread of exotic fishes. American alligator populations have declined in the Rocky Glades, and alligator holes have filled with sediment, as a result of shortened hydroperiod and increased drought severity. Habitat options for wading birds to forage during the early dry season and during unusually wet years have been reduced due to loss of spatial extent and shortened hydroperiod.

Wetlands↗
USGS2007

Characterization of microtopography and its influence on vegetation patterns in created wetlands

Created wetlands are increasingly used to mitigate wetland loss. Thus, identifying wetland creation methods that enhance ecosystem development might increase the likelihood of mitigation success. Noting that the microtopographic variation found in natural wetland settings may not commonly be found in created wetlands, this study explores relationships between induced microtopography, hydrology, and plant species richness/diversity in non-tidal freshwater wetlands, comparing results from two created wetland complexes with those from a mature reference wetland complex in northern Virginia. Elevation, steel rod oxidation depth, and species cover were measured along replicate multiscale (0.5 m-, 1 m-, 2 m-, and 4 m-diameter) tangentially conjoined circular transects in each wetland. Microtopography was surveyed using a total station and results used to derive three roughness indices: tortuosity, limiting slope, and limiting elevation difference. Steel rod oxidation depth was used to estimate water table depth, with data collected four times during the growing season for each study site. Plant species cover was estimated visually in 0.2 m 2 plots surveyed at peak growth and used to assess species richness, diversity, and wetland prevalence index. Differences in each attribute were examined among disked and non-disked created wetlands and compared to a natural wetland as a reference. Disked and non-disked created wetlands differed in microtopography, both in terms of limiting elevation difference and tortuosity. However, both were within the range of microtopography encompassed by natural wetlands. Disked wetlands supported higher plant diversity and species richness than either natural or non-disked wetlands, as well as greater within-site species assemblage variability than non-disked wetlands. Irrespective of creation method, plant diversity in created wetlands was correlated with tortuosity and limiting elevation difference, similar to correlations observed for natural wetlands. Vegetation was more hydrophytic at disked sites than at non-disked sites, and of equivalent wetland indicator status to natural sites, even though all sites appeared comparable in terms of hydrology. Results suggest that disking may enhance vegetation community development, thus better supporting the goals of wetland mitigation.

Virginia↗
USGS2001

Associations of grassland birds with landscape factors in southern Wisconsin

We investigated the association of grassland birds with field- and landscape-level habitat variables in south-central Wisconsin during 1985–1987. Landscape-level variables were measured and digitized at 200, 400 and 800 m from the perimeter of 38 200 m × 100 m strip transects. A mixture of field and landscape variables was associated with the density of savannah sparrow ( Passerculus sandwichensis ) and grasshopper sparrow ( Ammodramus savannarum ). Only landscape variables were associated with the density of bobolink ( Dolichonyx oryzivorus ), eastern meadowlark ( Sturnella magna ) and all birds that were grassland species of management concern. Field size was not an important predictor of bird density. Cover-type diversity of the surrounding area was commonly selected in the models for three species and all birds that were grassland species of management concern. Higher bird densities in the transects were associated with landscapes where the cover types were less diverse. Landscapes with low cover type diversity were dominated by grassland, pasture and hay. Field habitat, mean patch size of cover types and distance to woody vegetation were the next most common predictors of avian density. The density of some grassland birds increased as nonlinear woody features such as woodlots and shrub carrs decreased in patch size, decreased in total amount in the landscape and increased in distance from a transect. However, density of other species was positively associated with linear woody features such as the total amount and nearness of hedgerows. The composition of the surrounding landscape, at least out to 800 m, is important in grassland bird management.

Wisconsin↗
USGS2017

Grassland bird productivity in warm season grass fields in southwest Wisconsin

Surrogate grasslands established through federal set-aside programs, such as U.S. Department of Agriculture's Conservation Reserve Program (CRP), provide important habitat for grassland birds. Warm season grass CRP fields as a group have the potential for providing a continuum of habitat structure for breeding birds, depending on how the fields are managed and their floristic composition. We studied the nesting activity of four obligate grassland bird species, Bobolink ( Dolichonyx oryzivorus ), Eastern Meadowlark ( Sturnella magna ), Grasshopper Sparrow ( Ammodramus savannarum ), and Henslow's Sparrow ( A. henslowii ), in relation to vegetative composition and fire management in warm season CRP fields in southwest Wisconsin during 2009–2011. Intraspecific variation in apparent nest density was related to the number of years since the field was burned. Apparent Grasshopper Sparrow nest density was highest in the breeding season immediately following spring burns, apparent Henslow's Sparrow nest density was highest 1 y post burn, and apparent Bobolink and Eastern Meadowlark nest densities were higher in post fire years one to three. Grasshopper Sparrow nest density was highest on sites with more diverse vegetation, specifically prairie forbs, and on sites with shorter less dense vegetation. Bobolink, Eastern Meadowlark, and Henslow's Sparrow apparent nest densities were higher on sites with deeper litter; litter was the vegetative component that was most affected by spring burns. Overall nest success was 0.487 for Bobolink (22 d nesting period), 0.478 for Eastern Meadowlark (25 d nesting period), 0.507 for Grasshopper Sparrow (22 d nesting period), and 0.151 for Henslow's Sparrow (21 d nesting period). The major nest predators were grassland-associated species: thirteen-lined ground squirrel ( Ictidomys tridecemlineatus ), striped skunk ( Mephitis mephitis ), milk snake ( Lampropeltis triangulum ), American badger ( Taxidea taxus ), and western fox snake ( Elaphe vulpina ). Overall depredation rate was not affected by the number of years since the site had been burned. The diversity of vegetation on warm season CRP fields created by management using fire provides a continuum of structure for obligate grassland birds to use for breeding and habitat for a diversity of nest predators.

Wisconsin↗
USGS2016

Distributions of small nongame fishes in the lower Yellowstone River

The Yellowstone River is the longest unimpounded river in the conterminous United States. It has a relatively natural flow regime, which helps maintain diverse habitats and fish assemblages uncommon in large rivers elsewhere. The lower Yellowstone River was thought to support a diverse nongame fish assemblage including several species of special concern. However, comprehensive data on the small nongame fish assemblage of the lower Yellowstone River is lacking. Therefore, we sampled the Yellowstone River downstream of its confluence with the Clark’s Fork using fyke nets and otter trawls to assess distributions and abundances of small nongame fishes. We captured 42 species (24 native and 18 nonnative) in the lower Yellowstone River with fyke nets. Native species constituted over 99% of the catch. Emerald shiners Notropis atherinoides , western silvery minnows Hybognathus argyritis , flathead chubs Platygobio gracilis , sand shiners Notropis stramineus , and longnose dace Rhinichthys cataractae composed nearly 94% of fyke net catch and were caught in every segment of the study area. We captured 24 species by otter trawling downstream of the Tongue River. Sturgeon chubs Macrhybopsis gelida , channel catfish Ictalurus punctatus , flathead chubs, stonecats Noturus flavus , and sicklefin chubs Macrhybopsis meeki composed 89% of the otter trawl catch. The upstream distributional limit of sturgeon chubs in the Yellowstone River was the Tongue River; few sicklefin chubs were captured above Intake Diversion Dam. This study not only provides biologists with baseline data for future monitoring efforts on the Yellowstone River but serves as a benchmark for management and conservation efforts in large rivers elsewhere as the Yellowstone River represents one of the best references for a naturally functioning Great Plains river.

Montana↗
USGS2020

A new technique to calculate earthquake stress transfer and to forecast aftershocks

Coseismic stress changes have been the primary physical principle used to explain aftershocks and triggered earthquakes. However, this method does not adequately forecast earthquake rates and diverse rupture populations when subjected to formal testing. We show that earthquake forecasts can be impaired by assumptions made in physics-based models, such as the existence of hypothetical optimal faults, and regional scale invariability of the stress field. We compare calculations made under these assumptions along with different realizations of a new conceptual triggering model that features a complete assay of all possible ruptures. In this concept, there always exists a set of theoretical planes that has positive failure stress conditions under a combination of background and coseismic static stress change. In the Earth, all of these theoretical planes may not exist, and if they do, they may not be ready to fail. Thus the actual aftershock plane may not correspond to the plane with the maximum stress change value. This is consistent with observations that mainshocks commonly activate faults with exotic orientations and rakes. Our testing ground is the M=7.2, 2010 El Mayor-Cucapah earthquake sequence that activated multiple diverse fault populations across the USA-Mexico border in California and Baja California. We carry out a retrospective test involving 748 M≥3.0 triggered earthquakes that occurred during a 3-yr period after the mainshock. We find that a probabilistic expression of possible aftershock planes constrained by pre-mainshock rupture patterns is strongly favoured (89% of aftershocks consistent with static stress triggering) versus an optimal fault implementation (35% consistent). Results show that coseismic stress change magnitudes do not necessarily control earthquake triggering, instead we find that the summed background stress and coseismic stress change promotes diverse ruptures. Our model can thus explain earthquake triggering in regions where optimal plane mapping shows coseismic stress reduction.

Bulletin of the Seismological Society of America↗
USGS2011

Ecosystem development in roadside grasslands: Biotic control, plant-soil interactions, and dispersal limitations

Roadside grasslands undergoing secondary succession are abundant, and represent ecologically meaningful examples of novel, human‐created ecosystems. Interactions between plant and soil communities (hereafter plant–soil interactions) are of major importance in understanding the role of biotic control in ecosystem functioning, but little is known about these links in the context of ecosystem restoration and succession. The assessment of the key biotic communities and interactions driving ecosystem development will help practitioners to better allocate the limited resources devoted to roadside grassland restoration. We surveyed roadside grasslands from three successional stages (0–2, 7–9, and >20 years) in two Mediterranean regions of Spain. Structural equation modeling was used to evaluate how interactions between plants, biological soil crusts (BSCs), and soil microbial functional diversity (soil microorganisms) affect indicators of ecosystem development and restoration: plant similarity to the reference ecosystem, erosion control, and soil C storage and N accumulation. Changes in plant community composition along the successional gradient exerted the strongest influence on these indicators. High BSC cover was associated with high soil stability, and high soil microbial functional diversity from late‐successional stages was associated with high soil fertility. Contrary to our expectations, the indirect effects of plants, mediated by either BSCs or soil microorganisms, were very weak in both regions, suggesting a minor role for plant–soil interactions upon ecosystem development indicators over long periods. Our results suggest that natural vegetation dynamics effectively improved ecosystem development within a time frame of 20 years in the grasslands evaluated. They also indicate that this time could be shortened if management actions focus on: (1) maintaining well‐conserved natural areas close to roadsides to enhance plant compositional changes towards late‐successional stages, (2) increasing BSC cover in areas under strong erosion risk, to avoid soil loss, and (3) enhancing soil microbial functional diversity in resource‐limited areas, to enhance soil C and N accumulation.

Ecological Applications↗
USGS2005

Population genetics of Gunnison sage-grouse: Implications for management

The newly described Gunnison sage-grouse ( Centrocercus minimus ) is a species of concern for management because of marked declines in distribution and abundance due to the loss and fragmentation of sagebrush habitat. This has caused remaining populations to be unusually small and isolated. We utilized mitochondrial DNA sequence data and data from 8 nuclear microsatellites to assess the extent of population subdivision among Gunnison sage-grouse populations in southwestern Colorado and southeastern Utah, USA. We found a high degree of population structure and low amounts of gene flow among all pairs of populations except the geographically adjacent Gunnison and Curecanti populations. Population structure for Gunnison sage-grouse was significantly higher than has been reported for greater sage-grouse ( C. urophasianus ). Further, we documented low levels of genetic diversity in some populations (particularly Dove Creek/Monticello and Piñon Mesa with an average of only 3.00 and 2.13 alleles per locus respectively) indicating that translocations from larger, more genetically diverse populations may be warranted. Bayesian analysis identified 3 potential migrants (involving San Miguel, Dove Creek/Monticello, Crawford, and Curecanti). Further, this analysis showed that 4 individuals from Cerro/Cimarron were more closely related to birds from San Miguel than to its geographically closer neighbors Gunnison and Curecanti. This suggests the Cerro/Cimarron area may act as a stepping stone for gene flow between San Miguel and Gunnison and that habitat restoration and protection in areas between these 2 basins should be a priority in an attempt to facilitate natural movement among these populations. Conservation plans should include monitoring and maintaining genetic diversity, preventing future habitat loss and fragmentation, enhancing existing habitat, and restoring converted sagebrush communities.

Journal of Wildlife Management↗
USGS1988

Genetic variability in the Florida manatee ( Trichechus manatus )

Tissue was obtained from 59 manatee ( Trichechus manatus ) carcasses salvaged from 20 counties in Florida. Allozyme phenotypes at 24 structural loci were determined by gel electrophoresis. Averages for the proportion of polymorphic loci and mean heterozygosity were 0.300 (range, 0.167-0.417) and 0.050 (range, 0.028-0.063), respectively. These estimates are equivalent to or higher than those generally reported for other species of marine mammals and do not support the hypothesis that body size and heterozygosity in mammals are related inversely. Among-region gene diversity accounted for only 4% of the total diversity. High rates of gene flow probably account for genetic homogeneity across regions. An F-statistic analysis revealed a general tendency toward excess homozygosity within regions. Management efforts to prevent future reductions in population size that would erode existing genic diversity should continue.

Journal of Mammalogy↗
USGS1995

Isohaline position as a habitat indicator for estuarine populations

Populations of native and introduced aquatic organisms in the San Francisco Bay/Sacramento-San Joaquin Delta Estuary ("Bay/Delta") have undergone significant declines over the past two decades. Decreased river inflow due to drought and increased freshwater diversion have contributed to the decline of at least some populations. Effective management of the estuary's biological resources requires a sensitive indicator of the response to freshwater inflow that has ecological significance, can be measured accurately and easily, and could be used as a "policy" variable to set standards for managing freshwater inflow. Positioning of the 2% (grams of salt per kilogram of seawater) bottom salinity value along the axis of the estuary was examined for this purpose. The 2% bottom salinity position (denoted by X 2 ) has simple and significant statistical relationships with annual measures of many estuarine resources, including the supply of phytoplankton and phytoplankton-derived detritus from local production and river loading; benthic macroinvertebrates (molluscs); mysids and shrimp; larval fish survival; and the abundance of planktivorous, piscivorous, and bottom-foraging fish. The actual mechanisms are understood for only a few of these populations. X 2 also satisfies other recognized requirements for a habitat indicator and probably can be measured with greater accuracy and precision than alternative habitat indicators such as net freshwater inflow into the estuary. The 2% value may not have special ecological significance for other estuaries (in the Bay/Delta, it marks the locations of an estuarine turbidity maximum and peaks in the abundance of several estuarine organisms), but the concept of using near-bottom isohaline position as a habitat indicator should be widely applicable. Although X 2 is a sensitive index of the estuarine community's response to net freshwater inflow, other hydraulic features of the estuary also determine population abundances and resource levels. In particular, diversion of water for export from or consumption within the estuary can have a direct effect on population abundance independent of its effect on X 2 . The need to consider diversion, in addition to X 2 , for managing certain estuarine resources is illustrated using striped bass survival as an example. The striped bass survival data were also used to illustrate a related important point: incorporating additional explanatory variables may decrease the prediction error for a population or process, but it can increase the uncertainty in parameter estimates and management strategies based on these estimates. Even in cases where the uncertainty is currently too large to guide management decisions, an uncertainty analysis can identify the most practical direction for future data acquisition.

California↗
USGS1989

Biogeography of marine podocopid Ostracodes in Micronesia

Shallow-water podocopic marine Ostracoda from Micronesian lagoons in the Marianas, Caroline, Marshall and Gilbert Islands in the western Pacific were analysed to establish their diversity and zoogeography within Micronesia and the taxonomic affinities with ostracodes from other tropical regions. Sixty-four bottom lagoonal sediment samples from twelve islands and atolls yielded more than seventy species representing over thirty-two ostracode genera. Q-mode cluster analysis using Jaccard coefficients showed that, with few exceptions, all or most samples from a particular lagoon form distinct subgroups (Jaccard=0.45-0.50). At lower levels, five groups delineate faunal regions within Micronesia: the Gilbert Islands (Onotoa) in the southeast part of the region, the northern Marshall Islands (Enewetak, Rongelap, Bikini), the southestern Marshall Islands (Kwajalein, Jaluit, Majuro, Arno), the Marianas and Caroline Islands (Guam, Truk, Pohnpei) and Pingelap. Patterns of species diversity show Guam, Truk, Pohnpei, Pingelap, Kwajalein and Onotoa have the highest species richness (S=32-42) and Shannon-Wiener diversity values (H(S)=2.62-3.02) in the study area. Enewetak, Jaluit, Majuro and Arno show lower values (S=23-27, H(S)=2.29-2.70). Of the ostracode species living in Micronesia, 64.3% have Indo-West Pacific affinities, 7.1% are circumtropical, 5.7% have East Pacific-Caribbean affinities, 11.4% are endemic to Micronesia, and 11.4% have unknown affinities. If the southeast Asian region is a primary species-source, the results show that each Micronesian lagoon is equally likely to be colonized by dispersal from the source region, despite differences in distance from a hypothetical source. However, each lagoon has a distinct ostracode assemblage, probably the result of unique history of random colonization events, local extinctions and environmental disturbances.

Journal of Biogeography↗
USGS1998

The ichnologic record of the continental invertebrate invasion; evolutionary trends in environmental expansion, ecospace utilization, and behavioral complexity

The combined study of continental trace fossils and associated sedimentary facies provides valuable evidence of colonization trends and events throughout the Phanerozoic. Colonization of continental environments was linked to the exploitation of empty or under-utilized ecospace. Although the nonmarine trace fossil record probably begins during the Late Ordovician, significant invasion of nonmarine biotopes began close to the Silurian-Devonian transition with the establishment of a mobile arthropod epifauna (Diplichnites ichnoguild) in coastal marine to alluvial plain settings. Additionally, the presence of vertical burrows in Devonian high-energy fluvial deposits reflects the establishment of a stationary, deep suspension-feeding infauna of the Skolithos ichnoguild. The earliest evidence of plant-arthropod interaction occurred close to the Silurian-Devonian boundary, but widespread and varied feeding patterns are known from the Carboniferous. During the Carboniferous, permanent subaqueous lacustrine settings were colonized by a diverse, mobile detritus-feeding epifauna of the Mermia ichnoguild, which reflects a significant palaeoenvironmental expansion of trace fossils. Paleozoic ichnologic evidence supports direct routes to the land from marginal marine environments, and migration to lakes from land settings. All nonmarine sedimentary environments were colonized by the Carboniferous, and subsequent patterns indicate an increase in ecospace utilization within already colonized depositional settings. During the Permian, back-filled traces of the Scoyenia ichnoguild record the establishment of a mobile, intermediate-depth, deposit-feeding in-fauna in alluvial and transitional alluvial-lacustrine sediment. Diversification of land plants and the establishment of ecologically diverse plant communities through time provided new niches to be exploited by arthropods. Nevertheless, most ot the evolutionary feeding innovations took place relatively early, during the Late Palaeozoic or early Mesozoic. A stationary deep unfauna, the Camborygma ichnoguild, was developed in Triassic transitional alluvial-lacustrinbe deposits. Terrestrial environments hosted the rise of complex social behavioral patterns, as suggested by the probable presence of hymenopteran and isopteran nests in Triassic paleosols. An increase in diversity of trace fossils is detected in Triassic-Jurassic eolian deposits, where the ichnofauna displays more varied behavioral patterns than their Paleozoic counterparts. Also, a mobile, intermediate-depth, deposit-feeding infauna, the Vagorichnus ichnoguild, was established in deep lake environments during the Jurassic. In contrast to Paleozoic permanent subaqueous assemblages typified by surface trails, Jurassic ichnocoenoses are dominated by infaunal burrows. High density of infaunal deposit-feeding traces of the Planolites ichnoguild caused major disruption of lacustrine sedimentary fabrics during the Cretaceous. Most insect mouthpart classes, functional feeding groups, and dietary guilds were established by the end of the Cretaceous. Diversification of modern insects is recorded by the abundance and complexity of structures produced by wasps, bees, dung-beetles, and termites in Cretaceous-Tertiary paleosols. The increase in bioturbation migrated from fluvial and lake-margin settings to permanent subaqueous lacustrine environments through time.

Palaios↗