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USGS2014

The relative impacts of climate and land-use change on conterminous United States bird species from 2001 to 2075

Species distribution models often use climate data to assess contemporary and/or future ranges for animal or plant species. Land use and land cover (LULC) data are important predictor variables for determining species range, yet are rarely used when modeling future distributions. In this study, maximum entropy modeling was used to construct species distribution maps for 50 North American bird species to determine relative contributions of climate and LULC for contemporary (2001) and future (2075) time periods. Species presence data were used as a dependent variable, while climate, LULC, and topographic data were used as predictor variables. Results varied by species, but in general, measures of model fit for 2001 indicated significantly poorer fit when either climate or LULC data were excluded from model simulations. Climate covariates provided a higher contribution to 2001 model results than did LULC variables, although both categories of variables strongly contributed. The area deemed to be "suitable" for 2001 species presence was strongly affected by the choice of model covariates, with significantly larger ranges predicted when LULC was excluded as a covariate. Changes in species ranges for 2075 indicate much larger overall range changes due to projected climate change than due to projected LULC change. However, the choice of study area impacted results for both current and projected model applications, with truncation of actual species ranges resulting in lower model fit scores and increased difficulty in interpreting covariate impacts on species range. Results indicate species-specific response to climate and LULC variables; however, both climate and LULC variables clearly are important for modeling both contemporary and potential future species ranges.

PLoS ONE↗

USGS2008

Forty-ninth supplement to the American Ornithologists' Union Check-list of North American birds

This is the eighth Supplement since the publication of the 7 th edition of the Check-list of North American Birds (American Ornithologists’ Union [AOU] 1998). It summarizes decisions made by the AOU’s Committee on Classification and Nomenclature-North and Middle America between 1 January and 31 December 2007.

The Auk↗

USGS2010

Estimating length of avian incubation and nestling stages in afrotropical forest birds from interval-censored nest records

In the East Usambara Mountains in northeast Tanzania, research on the effects of forest fragmentation and disturbance on nest survival in understory birds resulted in the accumulation of 1,002 nest records between 2003 and 2008 for 8 poorly studied species. Because information on the length of the incubation and nestling stages in these species is nonexistent or sparse, our objectives in this study were (1) to estimate the length of the incubation and nestling stage and (2) to compute nest survival using these estimates in combination with calculated daily survival probability. Because our data were interval censored, we developed and applied two new statistical methods to estimate stage length. In the 8 species studied, the incubation stage lasted 9.6-21.8 days and the nestling stage 13.9-21.2 days. Combining these results with estimates of daily survival probability, we found that nest survival ranged from 6.0% to 12.5%. We conclude that our methodology for estimating stage lengths from interval-censored nest records is a reasonable and practical approach in the presence of interval-censored data. ?? 2010 The American Ornithologists' Union.

The Auk↗

USGS2011

Fifty-second supplement to the American Ornithologists' Union Check-list of North American Birds

This is the 11th supplement since publication of the seventh edition of the Check-list of North American Birds (American Ornithologists' Union AOU 1998). It summarizes decisions made between 1 April 2010 and 15 April 2011 by the AOU's Committee on Classification and Nomenclature-North and Middle America. The Committee has continued to operate in the manner outlined in the 42nd Supplement (AOU 2000). There were no changes to committee membership in 2010.

The Auk↗

USGS2025

Combining ecological and genomic diversity surveys to inform conservation and restoration of an endangered wetland plant, soft salty bird’s-beak (Chloropyron molle ssp. molle)

Emergent tidal wetlands are declining globally as a result of sea level rise and land use change. This habitat loss can keenly affect rare plant species within wetlands, and may require restoration to meet species recovery goals related to retaining populations throughout species' ranges. Soft salty bird’s-beak ( Chloropyron molle ssp. molle ) is a federally- and state-endangered hemi-parasitic plant that occurs at the upper marsh transition zone in the San Francisco Bay–Delta, California, USA. We combined field surveys to document habitat associations and trends in abundance with genomic surveys to understand patterns of genetic structure in this rare endemic. We found that C . molle ssp. molle persisted at nine previously occupied marsh sites, although four sites (Hill Slough, MOTCO East, Fagan Marsh, and Joice Island) were smaller in population size than when surveyed in the 1990s. Additionally, twelve sites contained plots with suitable but unoccupied habitat that could be further assessed for restoration. Genomic analysis of over 40,000 single-nucleotide polymorphisms (SNPs) and 253 individuals grouped C . molle ssp. molle into six to seven regional genetic clusters with isolation by distance, and confirmed that C . molle ssp. molle is genetically distinct from adjacent populations of its closest relative ( C . molle ssp. hispidum ). The western-most C . molle ssp. molle sites of Point Pinole and Fagan Marsh were the most genetically and geographically isolated and had the lowest genome-wide diversity. Heterozygosity in sets of genes associated with tidal elevation, salinity, and annual and summer precipitation varied independently across populations. Overall, these genomic patterns indicate that selecting donor sites with similar environmental conditions and utilizing composite seeding approaches from multiple sites could allow for local adaptation to a range of possible environmental conditions. This comprehensive survey of habitat and genomic patterns can allow for the development of restoration actions and build climate-adaptation planning to help prevent the loss of a rare plant.

California↗

USGS2016

Spatial modeling of wild bird risk factors to investigate highly pathogenic A(H5N1) avian influenza virus transmission

One of the longest-persisting avian influenza viruses in history, highly pathogenic avian influenza virus (HPAIV) A(H5N1), continues to evolve after 18 years, advancing the threat of a global pandemic. Wild waterfowl (family Anatidae), are reported as secondary transmitters of HPAIV, and primary reservoirs for low-pathogenic avian influenza viruses, yet spatial inputs for disease risk modeling for this group have been lacking. Using GIS and Monte Carlo simulations, we developed geospatial indices of waterfowl abundance at 1 and 30 km resolutions and for the breeding and wintering seasons for China, the epicenter of H5N1. Two spatial layers were developed: cumulative waterfowl abundance (WAB), a measure of predicted abundance across species, and cumulative abundance weighted by H5N1 prevalence (WPR), whereby abundance for each species was adjusted based on prevalence values then totaled across species. Spatial patterns of the model output differed between seasons, with higher WAB and WPR in the northern and western regions of China for the breeding season and in the southeast for the wintering season. Uncertainty measures indicated highest error in southeastern China for both WAB and WPR. We also explored the effect of resampling waterfowl layers from 1 km to 30 km resolution for multi-scale risk modeling. Results indicated low average difference (less than 0.16 and 0.01 standard deviations for WAB and WPR, respectively), with greatest differences in the north for the breeding season and southeast for the wintering season. This work provides the first geospatial models of waterfowl abundance available for China. The indices provide important inputs for modeling disease transmission risk at the interface of poultry and wild birds. These models are easily adaptable, have broad utility to both disease and conservation needs, and will be available to the scientific community for advanced modeling applications.

Avian Diseases↗

USGS2016

High rates of detection of Clade 2.3.4.4 Highly Pathogenic Avian Influenza H5 viruses in wild birds in the Pacific Northwest during the winter of 2014-2015

In 2014, Clade 2.3.4.4 H5N8 highly pathogenic avian influenza (HPAI) viruses spread across the Republic of Korea and ultimately were reported in China, Japan, Russia and Europe. Mortality associated with a reassortant HPAI H5N2 virus was detected in poultry farms in Western Canada at the end of November. The same strain (with identical genetic structure) was then detected in free-living wild birds that had died prior to December 8 of unrelated causes in Whatcom County, Washington, USA in an area contiguous with the index Canadian location. A gyrfalcon (Falco rusticolus) that had hunted and fed on an American wigeon (Anas americana) on December 6 in the same area and died two days later, tested positive for the Eurasian origin HPAI H5N8. Subsequently, an Active Surveillance Program using hunter-harvest waterfowl in Washington and Oregon detected ten HPAI H5 viruses, of three different subtypes (four H5N2, three H5N8 and three H5N1) with 4 segments in common (HA, PB2, NP and MA). In addition, a mortality-based Passive Surveillance Program detected 18 HPAI (14 H5N2 and four H5N8) cases from Idaho, Kansas, Oregon, Minnesota, Montana, Washington and Wisconsin. Comparatively, mortality-based passive surveillance appears to be detecting these HPAI infections at a higher rate than active surveillance during the period following initial introduction into the US.

Avian Diseases↗

USGS2002

Producing progeny from endangered birds of prey: Treatment of urine-contaminated semen and a novel intramagnal insemination approach

Wild raptors brought into an ex situ environment often have poor semen quality that is further compromised by urine contamination. Generally, it is believed that in birds, artificial insemination into the cloaca or caudal vagina of females requires large doses of high-quality spermatozoa to maximize fertility. In an effort to define and overcome some of the challenges associated with reproduction in wild raptors, the objectives of this study were to 1) evaluate the frequency, impact, and remediation of urine contamination in fresh ejaculates for the purpose of maintaining sperm motility and viability in vitro, and 2) develop a deep insemination method that allows low numbers of washed sperm to be placed directly into the magnum to increase the probability of producing fertilized eggs. The species evaluated include golden eagle (Aquila chrysoetos), imperial eagle (A. adalberti), Bonelli's eagle (Hiernaetus fasciatus), and peregrine, falcon (Falco peregrinus). Semen samples were collected and pooled by species, and a minimum of 25 pooled ejaculates per species were evaluated for urine contamination, pH, sperm viability, and sperm motility; the samples were either unwashed or washed in neutral (pH 7.0) or alkaline (pH 8.0) modified Lake's diluent. Female golden eagles and peregrine falcons were inseminated via transjunctional, intramagnal insemination with washed spermatozoa from urine-contaminated samples. Urine contamination occurred in 36.8 +/- 12.8% (mean +/- SEM) golden eagle, 43.1 +/- 9.1% imperial eagle, 28.7 +/- 16.1% Bonelli's eagle, and 48.2 +/- 17.3% peregrine falcon ejaculates. The pH in urine-contaminated semen samples ranged from 6.48 +/- 0.3 to 6.86 +/- 0.2, and in noncontaminated samples it ranged from from 7.17 +/- 0.1 to 7.56 +/- 0.1. Sperm viability and motility were reduced (P < 0.05) in all species for unwashed vs. washed sperm after 30 min incubation at room temperature. Two peregrine falcon chicks and one golden eagle chick hatched after intramagnal insemination. This study demonstrates that urine contamination, a common and lethal acidifier in manually collected raptor ejaculates, can be circumvented by immediate, gentle seminal washing. Furthermore, these processed sperm, when deposited by transjunctional intramagnal insemination, can produce live young.

Journal of Zoo and Wildlife Medicine↗

USGS2000

Forty-second supplement to the American Ornithologists' Union Check-list of North American Birds

This first Supplement since publication of the 7 th edition (1998) of the AOU Check-list of North American Birds summarizes changes made by the Committee on Classification and Nomenclature between its reconstitution in late 1998 and 31 January 2000.

The Auk↗

USGS2005

Forty-sixth supplement to the American Ornithologists' Union Check-list of North American Birds

This is the fifth Supplement since publication of the 7th edition of the Check-list of North American Birds (American Ornithologists' Union [AOU] 1998). It summarizes decisions made by the AOU's Committee on Classification and Nomenclature between 1 January and 31 December 2004.

The Auk↗

USGS2006

Forty-seventh supplement to the American Ornithologists' Union Check-list of North American birds

This is the sixth Supplement since publication of the 7th edition of the Check-list of North American Birds (American Ornithologists' Union [AOU] 1998). It summarizes decisions made by the AOU's Committee on Classification and Nomenclature-North America between 1 January and 31 December 2005.

The Auk↗

USGS2007

Forty-eighth supplement to the American Ornithologists' Union Check-list of North American Birds

This is the seventh Supplement since the publication of the 7 th edition of the Check-list of North American Birds (American Ornithologists’ Union [AOU] 1998). It summarizes decisions made by the AOU’s Committee on Classification and Nomenclature-North America between 1 January and 31 December 2006.

The Auk↗

USGS2015

Drought-caused delay in nesting of Sonoran Desert birds and its facilitation of parasite- and predator-mediated variation in reproductive success

As our understanding of climate change has increased, so has our awareness of the impacts of these changes on biotic systems. Climate models are nearly unanimous in their predictions for increased drought frequency in southwestern North America, and delays in nest initiation due to drought may influence nesting success and productivity for many Sonoran Desert bird species. In southeastern California and western Arizona in 2004–2009, we found negative correlations for 13 of 13 species between nest initiation date and rainfall accumulation during the preceding 4-month winter rainy season. Nesting was delayed more than 3 weeks for some species during extreme droughts in 2006 and 2007. During 2004–2009, we found a significant negative effect of nest initiation date on nest survival probability (β̂ = −0.031 ± 0.005 SE, P < 0.001) for the four species of greatest sample size. To investigate the role of nesting delay in nesting success and productivity, in 2010 we conducted a manipulative experiment with Black-tailed Gnatcatchers ( Polioptila melanura ; BTGN) and Verdins ( Auriparus flaviceps ; VERD). Following a wet winter, we delayed clutch initiation dates for treatment pairs to match first-egg dates that we observed during droughts in 2006 and 2007. Nest initiation date had a significant negative effect on nest survival of both species (BTGN: β̂ = −1.18 ± 0.27 SE, P < 0.001; VERD: β̂ = −2.33 ± 0.51 SE, P = 0.003). Treatment pairs were unable to overcome the lost period of high productivity in March and early April, and had lower productivity than control pairs over the entire breeding season. As nest predation and Brown-headed Cowbird ( Molothrus ater ) parasitism were the most common causes of nest failure, we conclude that the impacts of climate change–caused drought on annual reproductive output in the Sonoran Desert will be further compounded by parasitism and predation for Black-tailed Gnatcatchers and by predation for Verdins.

The Auk↗

USGS2014

Fifty-fifth supplement to the American Ornithologists' Union Check-list of North American Birds

This is the 14th supplement since publication of the 7th edition of the Check-list of North American Birds (American Ornithologists' Union [AOU] 1998). It summarizes decisions made between May 15, 2013, and May 15, 2014, by the AOU's Committee on Classification and Nomenclature - North and Middle America. The Committee has continued to operate in the manner outlined in the 42nd Supplement (AOU 2000).

The Auk↗

USGS2015

Fifty-sixth supplement to the American Ornithologists' Union: Check-list of North American Birds

This is the 15th supplement since publication of the 7th edition of the Check-list of North American Birds (American Ornithologists' Union [AOU] 1998). It summarizes decisions made between May 15, 2014, and April 15, 2015, by the AOU's Committee on Classification and Nomenclature - North and Middle America. The Committee has continued to operate in the manner outlined in the 42nd Supplement (AOU 2000).

The Auk↗

USGS2016

Fifty-seventh supplement to the American Ornithologists' Union Check-list of North American Birds

This is the 16th supplement since publication of the 7th edition of the Check-list of North American Birds (American Ornithologists' Union [AOU] 1998). It summarizes decisions made between April 15, 2015, and April 15, 2016, by the AOU's Committee on Classification and Nomenclature—North and Middle America. The Committee has continued to operate in the manner outlined in the 42nd Supplement (AOU 2000).

The Auk↗

USGS2017

Fifty-eighth supplement to the American Ornithologists' Union: Check-list of North American Birds

This is the 17th supplement since publication of the 7th edition of the Check-list of North American Birds (American Ornithologists' Union [AOU] 1998). It summarizes decisions made between April 15, 2016, and April 15, 2017, by the AOS's Committee on Classification and Nomenclature—North and Middle America. The Committee has continued to operate in the manner outlined in the 42nd Supplement

The Auk↗

USGS2001

An inexpensive method for quantifying incubation patterns of open-cup nesting birds, with data for black-throated Blue warblers

Quantifying incubation patterns has often involved long observation periods in the field, video cameras, or the use of other electronic devices that sometimes require the partial destruction of clutches and insertion of artificial eggs. In this study, we used an inexpensive, nondestructive method involving temperature probes combined with data loggers to examine the incubation rhythm of female Black-throated Blue Warblers ( Dendroica caerulescens ). The method provided detailed records of on–off patterns for females for selected 24-h periods during incubation. Female warblers spent an average (±SE) of 64.0% of daylight hours incubating in bouts lasting 20.5 ± 1.5 min and made 2.4 ± 0.1 departures from the nest/h on trips that lasted 10.6 ± 0.7 min. Incubation bouts were longer and females spent more time incubating per hour in the mornings and late afternoons than at mid-day. Older females had longer incubation bouts and tended to have shorter incubation periods than did yearling females, suggesting that experienced individuals were more effective incubators. Because of its ease of use and because nests with probes were not depredated at a higher rate than controls, we suggest that the temperature probe/data logger method is an efficient and effective way to quantify incubation rhythms for open-cup nesting birds.

Journal of Field Ornithology↗