SEARCH · Geology Reports

Results for “Ecological Restoration”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,171 records · Page 65Linked to original sources

USGS2018

Fire and climate suitability for woody vegetation communities in the south central United States

Climate and fire are primary drivers of plant species distributions. Long-term management of south central United States woody vegetation communities can benefit from information on potential changes in climate and fire frequencies, and how these changes might affect plant communities. We used historical (1900 to 1929) and future (2040 to 2069 and 2070 to 2099) projected climate data for the conterminous US to estimate reference and future fire probabilities using a physical chemistry fire frequency model. We then used the fire probability data with additional climate parameters to construct maximum entropy environmental suitability models for three south central US vegetation communities. The modeled communities included an oak type (dominated by post oak, Quercus stellata Wangenh., and blackjack oak, Q. marilandica Münchh.), a mesquite type (dominated by honey mesquite, Prosopis glandulosa Torr., and velvet mesquite, P. velutina Wooton), and a pinyon−juniper type (dominated by pinyon pine, Pinus edulis Engelm., and Utah juniper, Juniperus osteosperma [Torr.] Little). We mapped baseline and future mean fire-climate suitability using data from three global climate models for 2040 to 2069 and 2070 to 2099; we also mapped future locations of threshold conditions for which all three models agreed on suitability for each community. Future projections included northward, southward, and eastward shifts in suitable conditions for the oaks along a broad path of fire-climate stability; an overall reduction in suitable area for historic mesquite communities coupled with potential expansion to new areas; and constriction and isolation of suitable conditions for pinyon−juniper communities. The inclusion of fire probability adds an important driver of vegetation distribution to climate envelope modeling. The simple models showed good fit, but future projections failed to account for future management activities or land use changes. Results provided information on potential future de-coupling and spatial re-arrangement of environmental conditions under which these communities have historically persisted and been managed. In particular, consensus threshold maps can inform long-term planning for maintenance or restoration of these communities, and they can be used as a potential tool for other communities in fire-prone environments within the study area and beyond its borders.

Fire Ecology↗

USGS2001

Macroinvertebrate instream flow studies after 20 years: A role in stream management and restoration

Over the past two decades of refinement and application of instream flow evaluations, we have examined the hydraulic habitat of aquatic macroinvertebrates in a variety of conditions, along with the role of these macroinvertebrates in sustaining ecosystem integrity. Instream flow analyses assume that predictable changes in channel flow characteristics can, in turn, be used to predict the change in the density or distribution of lotic species or, more appropriately, the availability of useable habitat for those species. Five major hydraulic conditions most affect the distribution and ecological success of lotic biota: suspended load, bedload movement, and water column effects, such as turbulence, velocity profile, and substratum interactions (near-bed hydraulics). The interactions of these hydraulic conditions upon the morphology and behavior of the individual organisms govern the distribution of aquatic biota. Historically, management decisions employing the Physical Habitat Simulation (PHABSIM) have focused upon prediction of available habitat for life stages of target fish species. Regulatory agencies have rarely included evaluation of benthos for flow reservations. Although ‘taxonomic discomfort’ may be cited for the reluctant use or creation of benthic criteria, we suggest that a basic misunderstanding of the links between benthic macroinvertebrate and the fish communities is still a problem. This is derived from the lack of a perceived ‘value’ that can be assigned to macroinvertebrate species. With the exception of endangered mussel species (for which PHABSIM analysis is probably inappropriate), this is understandable. However, it appears that there is a greater ability to predict macroinvertebrate distribution (that is, a response to the change in habitat quality or location) and diversity without complex population models. Also, habitat suitability criteria for water quality indicator taxa (Ephemeroptera, Plecoptera, and Trichoptera; the so-called ‘EPTs’) may also provide additional management options to stream regulators. The greatest application for macroinvertebrate criteria will be in low-order streams where a more immediate link to fish communities can be established. We present an example from Queens Creek, in North Carolina, USA, in which monthly allocations required to preserve the integrity of the benthic macroinvertebrate community were significantly higher than for the target benthic fish species, Cottus bairdi . In the months when both Cottus and community diversity of macroinvertebrates were the ‘bottleneck’ life stages, preservation of only fish species could result in an additional 5–25% loss in macroinvertebrate habitat. We suggest that, as there becomes an increased emphasis on maintaining macroinvertebrates as monitors of stream health, there will be a concurrent emphasis on incorporating hydraulic habitat conditions as a part of bioassessment.

Regulated Rivers: Research & Management↗

USGS2016

Factors affecting post-control reinvasion by seed of an invasive species, Phragmites australis , in the central Platte River, Nebraska.

Invasive plants, such as Phragmites australis , can profoundly affect channel environments of large rivers by stabilizing sediments and altering water flows. Invasive plant removal is considered necessary where restoration of dynamic channels is needed to provide critical habitat for species of conservation concern. However, these programs are widely reported to be inefficient. Post-control reinvasion is frequent, suggesting increased attention is needed to prevent seed regeneration. To develop more effective responses to this invader in the Central Platte River (Nebraska, USA), we investigated several aspects of Phragmites seed ecology potentially linked to post-control reinvasion, in comparison to other common species: extent of viable seed production, importance of water transport, and regeneration responses to hydrology. We observed that although Phragmites seed does not mature until very late in the ice-free season, populations produce significant amounts of viable seed (>50 % of filled seed). Most seed transported via water in the Platte River are invasive perennial species, although Phragmites abundances are much lower than species such as Lythrum salicaria , Cyperus esculentus and Phalaris arundinacea . Seed regeneration of Phragmites varies greatly depending on hydrology, especially timing of water level changes. Flood events coinciding with the beginning of seedling emergence reduced establishment by as much as 59 % compared to flood events that occurred a few weeks later. Results of these investigations suggest that prevention of seed set (i.e., by removal of flowering culms) should be a priority in vegetation stands not being treated annually. After seeds are in the seedbank, preventing reinvasion using prescribed flooding has a low chance of success given that Phragmites can regenerate in a wide variety of hydrologic microsites.

Nebraska↗

USGS2020

Forest restoration and fuels reduction: Convergent or divergent?

For over 20 years, forest fuel reduction has been the dominant management action in western US forests. These same actions have also been associated with the restoration of highly altered frequent-fire forests. Perhaps the vital element in the compatibility of these treatments is that both need to incorporate the salient characteristics that frequent fire produced—variability in vegetation structure and composition across landscapes and the inability to support large patches of high-severity fire. These characteristics can be achieved with both fire and mechanical treatments. The possible key to convergence of fuel reduction and forest restoration strategies is integrated planning that permits treatment design flexibility and a longer-term focus on fire reintroduction for maintenance. With changing climate conditions, long-term forest conservation will probably need to be focused on keeping tree density low enough (i.e., in the lower range of historic variation) for forest conditions to adapt to emerging disturbance patterns and novel ecological processes.

Arizona, California, Colorado, Idaho, Montana, New↗

USGS2022

Crowding, climate, and the case for social distancing among trees

In an emerging era of megadisturbance, bolstering forest resilience to wildfire, insects, and drought has become a central objective in many western forests. Climate has received considerable attention as a driver of these disturbances, but few studies have examined the complexities of climate–vegetation–disturbance interactions. Current strategies for creating resilient forests often rely on retrospective approaches, seeking to impart resilience by restoring historical conditions to contemporary landscapes, but historical conditions are becoming increasingly unattainable amidst modern bioclimatic conditions. What becomes an appropriate benchmark for resilience when we have novel forests, rapidly changing climate, and unprecedented disturbance regimes? We combined two longitudinal datasets—each representing some of the most comprehensive spatially explicit, annual tree mortality data in existence—in a post-hoc factorial design to examine the nonlinear relationships between fire, climate, forest spatial structure, and bark beetles. We found that while prefire drought elevated mortality risk, advantageous local neighborhoods could offset these effects. Surprisingly, mortality risk ( P m ) was higher in crowded local neighborhoods that burned in wet years ( P m = 42%) compared with sparse neighborhoods that burned during drought ( P m = 30%). Risk of beetle attack was also increased by drought, but lower conspecific crowding impeded the otherwise positive interaction between fire and beetle attack. Antecedent fire increased drought-related mortality over short timespans (<7 years) but reduced mortality over longer intervals. These results clarify interacting disturbance dynamics and provide a mechanistic underpinning for forest restoration strategies. Importantly, they demonstrate the potential for managed fire and silvicultural strategies to offset climate effects and bolster resilience to fire, beetles, and drought.

California↗

USGS2026

Habitat restoration efforts increase patch retention times in migratory mule deer (Odocoileus hemionus)

Mule deer ( Odocoileus hemionus ) populations have been declining across much of their range, often due to habitat alteration. Habitat alterations, including the introduction of non-native annual grasses and the expansion of pinyon–juniper (PJ) forests on sagebrush ecosystems, are changing resource availability compared to historical conditions. Extensive habitat restoration has been completed across the State of Utah to foster plant communities that better reflect historical conditions and optimal mule deer habitat. We investigated how patch retention times differ on eight different habitat restoration treatment types and random locations during summer and winter across the State of Utah, to evaluate the efficacy of restoration treatments for migratory mule deer, as retention time is expected to reflect resource availability. We developed seasonal moving-window Brownian Bridge Movement Models for individual mule deer ( n = 593 animals), and intersected occurrence distributions (OD) with habitat restoration treatments and randomly generated background landscape polygons. We quantified patch retention time as the number of days individuals’ OD overlapped treatment or random polygons during each season, using a Poisson regression. In winter sites treated to remove PJ, both with (56.5 days, 95% CI [29.3, 108.0]) and without seeding (55.3 days, 95% CI [29.1, 105.8]), as well as sagebrush restoration sites (59.0 days, 95% CI [30.6, 114.8]), had increased retention times when compared to the landscape average (41.9 days, 95% CI [20.7, 84.1]), with effects decreasing 5+ years post-treatment. Retention times in summer were longer across all treatment types in the 2–4-year post-treatment age class (37.5 days, 95% CI [26.3, 53.1]) compared to the landscape average (28.6 days, 95% CI [25.7, 31.8]). Our results demonstrate the positive effects of habitat restoration through increased patch retention times on mule deer winter and summer range and may suggest follow-up treatment 5+ years after initial treatment to maximize mule deer use.

Utah↗

USGS2022

A statistical framework for modelling migration corridors

1. Management of animal populations requires spatially explicit knowledge of movement corridors, such as those used during seasonal migrations. GPS tracking data allows for mapping of corridors from directly observed movements, providing important insights, but tracking data is absent for many populations. 2. We developed a novel statistical corridor modeling approach that predicts movement corridors from cost-distance movement models fit directly to migration tracking data. Unlike existing predictive approaches, this does not require the ad-hoc transformation of habitat suitability surfaces into resistance surfaces. We tested the ability of the approach to recover parameters used to generate simulated movements. We then used GPS data from three migrating mule deer (Odocoileus hemionus) herds in Idaho and Wyoming to model corridors as a function of elevation, slope, aspect, percent shrub, date of peak green-up, snow-off date, and human footprint. We assessed the predictive ability of the fitted models using validation tracks from the same herd as well as from the other herds. 3. The approach reproduced parameters used to generate the simulated movements, predicted the corridors used by migratory populations, and described the direction, magnitude, and confidence levels of the effects of environmental variables on corridors. The effects environmental variables had on corridors differed depending on the herd. Within-herd validation indicated that fitted corridor models are more accurate at predicting migration corridors than null models, and cross-herd validation indicated that fitted models for some herds accurately predicted the observed migrations of other herds. 4. In addition to the practical benefit of mapping corridors for management, our statistical corridor modeling framework sets the stage for evaluating fundamental questions about the fitness tradeoffs, navigation, learning, fidelity, and movement constraints that influence migratory and other corridor-generating behavior. Models of predictive corridors can inform management and planning for the conservation of migrations across taxa, including the potential restoration of corridors. Our corridor modeling approach is also readily applied to non-migratory animal movements.

Idaho, Wyoming↗

USGS2013

Population-level effects of egg predation on a native planktivore in a large freshwater lake

Using a 37-year recruitment time series, we uncovered a field pattern revealing a strong, inverse relationship between bloater Coregonus hoyi recruitment success and slimy sculpin Cottus cognatus biomass in Lake Michigan (United States), one of the largest freshwater lakes of the world. Given that slimy sculpins (and deepwater sculpin Myoxocephalus thompsonii) are known egg predators that spatiotemporally overlap with incubating bloater eggs, we used recently published data on sculpin diets and daily ration to model annual bloater egg consumption by sculpins for the 1973–2010 year-classes. Although several strong year-classes were produced in the late 1980s when the proportion of eggs consumed by slimy sculpins was extremely low (i.e., <0.001) and several weak year-classes were produced when the proportion of bloater eggs consumed was at its highest (i.e., >0.10–1.0), egg predation failed to explain why recruitment was weak for the 1995–2005 year-classes when the proportion consumed was also low (i.e., <0.02). We concluded that egg predation by slimy and deepwater sculpins could have limited bloater recruitment in some years, but that some undetermined factor was more important in many other years. Given that slimy sculpin densities are influenced by piscivorous lake trout Salvelinus namaycush, the restoration of which in Lake Michigan has lagged behind those in lakes Superior and Huron, our study highlights the importance of an ecosystem perspective when considering population dynamics of fishes.

Lake Michigan↗

USGS2007

Landscape heterogeneity shapes predation in a newly restored predator-prey system

Because some native ungulates have lived without top predators for generations, it has been uncertain whether runaway predation would occur when predators are newly restored to these systems. We show that landscape features and vegetation, which influence predator detection and capture of prey, shape large-scale patterns of predation in a newly restored predator-prey system. We analysed the spatial distribution of wolf (Canis lupus) predation on elk (Cervus elaphus) on the Northern Range of Yellowstone National Park over 10 consecutive winters. The influence of wolf distribution on kill sites diminished over the course of this study, a result that was likely caused by territorial constraints on wolf distribution. In contrast, landscape factors strongly influenced kill sites, creating distinct hunting grounds and prey refugia. Elk in this newly restored predator-prey system should be able to mediate their risk of predation by movement and habitat selection across a heterogeneous risk landscape. ?? 2007 Blackwell Publishing Ltd/CNRS.

Ecology Letters↗

USGS2021

Integrated hierarchical models to inform management of transitional habitat and the recovery of a habitat specialist

Quantifying the contribution of habitat dynamics relative to intrinsic population processes in regulating species persistence remains an ongoing challenge in ecological and applied conservation. Understanding these drivers and their relationship is essential for managing habitat‐dependent species, especially those that specialize in transitional habitats. Limitations in the ability of natural disturbance to mediate transitional habitat dynamics have resulted in a decline in early‐ and mid‐successional vegetation structure and prompted the need for aggressive habitat management to replace natural perturbations and increase habitat structural complexity. We describe a collaborative effort with a group of independent land managers to design an adaptive management program for restoring an imperiled ecosystem and recovering declining populations of an endemic habitat specialist. We developed a set of integrated, hierarchical models to estimate management‐mediated transition rates among vegetation classes in two dominant scrub communities and the species response (local colonization and extinction probabilities) as a function of habitat state. Models were fit using a long‐term data set of habitat and occupancy observations from 361 Florida scrub‐jay territories across two Florida counties. Occupancy model results correspond closely to previous approaches of estimating differential survival and reproductive success associated with habitat conditions, with highest colonization and lowest extinction rates estimated for those habitat states found to have the highest rates of survival and reproduction. In addition to offering an innovative approach for jointly modeling habitat and species population dynamics, the program we describe will also be of interest from a management perspective by providing guidance for developing collaborative, adaptive management frameworks from the ground up. We engaged land managers via workshops to specify objectives and desired state‐variable conditions, identify management alternatives, and elicit consensus opinions on model parameters. Treating expert opinions as pseudo‐observations to define Dirichlet priors allowed us to make use of existing management knowledge. Formal learning was then accumulated by updating transition probability estimates as management activities were implemented over the study period. We believe this adaptive management framework provides a useful approach for increasing our understanding of complex ecological relationships and hope that it will be adopted by others who have interest in informing management and conservation efforts.

Florida↗

USGS2012

Control of reed canarygrass promotes wetland herb and tree seedling establishment in an upper Mississippi River Floodplain forest

Phalaris arundinacea (reed canarygrass) is recognized as a problematic invader of North American marshes, decreasing biodiversity and persisting in the face of control efforts. Less is known about its ecology or management in forested wetlands, providing an opportunity to apply information about factors critical to an invader's control in one wetland type to another. In a potted plant experiment and in the field, we documented strong competitive effects of reed canarygrass on the establishment and early growth of tree seedlings. In the field, we demonstrated the effectiveness of a novel restoration strategy, combining site scarification with late fall applications of pre-emergent herbicides. Treatments delayed reed canarygrass emergence the following spring, creating a window of opportunity for the early growth of native plants in the absence of competition from the grass. They also allowed for follow-up herbicide treatments during the growing season. We documented greater establishment of wetland herbs and tree seedlings in treated areas. Data from small exclosures suggest, however, that deer browsing can limit tree seedling height growth in floodplain restorations. Slower tree growth will delay canopy closure, potentially allowing reed canarygrass re-invasion. Thus, it may be necessary to protect tree seedlings from herbivory to assure forest regeneration.

Wisconsin↗

USGS2021

Connectivity of Mojave Desert tortoise populations—Management implications for maintaining a viable recovery network

Executive Summary The historic distribution of Mojave desert tortoises ( Gopherus agassizii ) was relatively continuous across the range, and the importance of tortoise habitat outside of designated tortoise conservation areas (TCAs) to recovery has long been recognized for its contributions to supporting gene flow between TCAs and to minimizing impacts and edge effects within TCAs. However, connectivity of Mojave desert tortoise populations has become a concern because of recent and proposed development of large tracts of desert tortoise habitat that cross, fragment, and surround designated conservation areas. This paper summarizes the underlying concepts and importance of connectivity for Mojave desert tortoise populations by reviewing current information on connectivity and providing information to managers for maintaining or enhancing desert tortoise population connectivity as they consider future proposals for development and management actions. Maintaining an ecological network for the Mojave desert tortoise, with a system of core habitats (TCAs) connected by linkages, is necessary to support demographically viable populations and long-term gene flow within and between TCAs. There are four points for wildlife and land-management agencies to consider when making decisions that could affect connectivity of Mojave desert tortoise populations (for example, in updating actions in resource management plans or amendments that could help maintain or restore functional connectivity in light of the latest information): Management of all desert tortoise habitat for persistence and connectivity . Desert tortoise populations continue to decline within most TCAs, and it is unlikely that trends are better in populations outside protected areas. Fragmentation exacerbates negative population trends by breaking large continuous populations into smaller isolated populations. Connectivity within large populations can enhance resilience to localized disturbances due to rescue by neighboring individuals. In contrast, smaller fragmented populations are resistant to rescue by their isolation and thus could suffer irreversible declines to extirpation from a variety of threats and stochastic events. Enhanced threat reduction to reverse declines within TCAs and to maintain occupied habitat in the surrounding matrix would help reduce the variability in population growth rates and improve the resilience of protected populations even while implementing efforts to improve connectivity. Each TCA has unique strengths and weaknesses regarding its ability to support minimum sustainable populations based on areal extent and its ability to support population increases based on landscape connection with adjacent populations. Considering how proposed projects (inside or outside of TCAs) affect connectivity and the ability of TCAs to support at least 5,000 adult tortoises (the numerical goal for each TCA) could help managers to maintain the resilience of TCAs to population declines. The same project, in an alternative location, could have very different impacts on local and regional populations. For example, within the habitat matrix surrounding TCAs, narrowly delineated corridors may not allow for natural population dynamics if they do not accommodate overlapping home ranges along most of their widths so that tortoises reside, grow, find mates, and produce offspring that can replace older tortoises. In addition, most habitat outside TCAs may receive more surface disturbance than habitat within TCAs. Therefore, managing the entire remaining matrix of desert tortoise habitat for permeability may be better than delineating fixed corridors. These concepts apply, especially given uncertainty about long-term condition of habitat, within and outside of TCAs under a changing climate. Ultimately, questions such as “ What are the critical linkages that need to be protected ?” could be better framed as “ How can we manage the remaining habitat matrix in ways that sustain ecological processes and habitat suitability for special status species ?” Land-management decisions made in the context of the latter question may be more conducive to maintenance of a functional ecological network. Limitations on landscape-level disturbance across habitat managed for the desert tortoise Clearly delineating habitat linkages and differentiating them from non-delineated areas by the uses that are permitted or prohibited within them by specific management guidelines can help achieve functional connectivity. Such guidelines would be most effective if they considered and accounted for all surface disturbances (for example, temporary disturbances such as fiberoptic lines or off-highway vehicle routes, right-of-ways, utility-scale solar development, urbanization) to the extent possible. A weighted framework that varies with the permanence or severity of the disturbance, and can be additive to quantify cumulative effects, could be useful (Xiong, 2020). For example, minor roads can alter tortoise movements independently of other features (Peaden and others, 2017; Hromada and others, 2020), but if the isolated dirt road is accompanied by a powerline that encourages raven predation (Xiong, 2020), then the two features together may be additive. Ignoring minor or temporary disturbance on the landscape could result in a cumulatively large impact that is not explicitly acknowledged (Goble, 2009); therefore, understanding and quantifying all surface disturbance on a given landscape is prudent. In California, the Bureau of Land Management established 0.1–1.0 percent caps on new surface-disturbance for TCAs and mapped linkages that address the issues described in number 1 of this list. Nevada, Utah, and Arizona currently do not have surface-disturbance limits. Limits comparable to those in the Desert Renewable Energy Conservation Plan (DRECP) would be 0.5 percent within TCAs and 1 percent within the linkages modeled by Averill-Murray and others (2013). Limits in some areas of California within the Desert Renewable Energy Conservation Plan, such as Ivanpah Valley, are more restrictive, at 0.1 percent. Continuity across the state line in Nevada could be achieved with comparable limits in the adjacent portion of Ivanpah Valley, as well as the Greater Trout Canyon Translocation Area and the Stump Springs Regional Augmentation Site. These more restrictive limits would help protect remaining habitat in the major interstate connectivity pathway through Ivanpah Valley and focal areas of population augmentation that provide additional population connectivity along the western flank of the Spring Mountains. In a recent study that analyzed 13 years of desert tortoise monitoring data, nearly all desert tortoise observations were at sites in which 5 percent or less of the surrounding landscape within 1 kilometer was disturbed (Carter and others, 2020a). To help maintain tortoise habitability and permeability across all other non-conservation-designated tortoise habitat, all surface disturbance could be limited to less than 5-percent development per square kilometer because the 5-percent threshold for development is the point at which tortoise occupation drops precipitously (Carter and others, 2020a). However, although individual desert tortoises were observed at development levels up to 5 percent, we do not know the fitness or reproductive characteristics of these individuals. This level of development also may not allow for long-term persistence of healthy populations that are of adequate size needed for demographic or functional connectivity; therefore, a conservative interpretation suggests that, ideally, development could be lower. Lower development levels would be particularly useful in areas within the upper 5th percentile of connectivity values modeled by Gray and others (2019). Reducing ancillary threats in places where connectivity is restricted to narrow strips of habitat, for example, narrow mountain passes or vegetated strips between solar development, could enhance the functionality of these vulnerable linkages. In such areas, maintaining multiple, redundant linkages could further enhance overall connectivity. Minimization of mortality from roads and maximization of passage under roads . Roads pose a significant threat to the long-term persistence of local tortoise populations, and roads of high traffic volume lead to severe population declines, which ultimately fragments populations farther away from the roads. Three points (a.–c.) pertain to reducing direct mortality of tortoises on the many paved roads that cross desert tortoise habitat and to maintaining a minimal level of permeability across these roads: Tortoise-exclusion fencing tied into culverts, underpasses, overpasses, or other passages below roads in desert tortoise habitat, would limit vehicular mortality of tortoises and provide opportunities for movement across the roads. Installation of shade structures on the habitat side of fences installed in areas with narrow population-depletion zones would limit overheating of tortoises that may pace the fence. Passages below highways could be maintained or retrofitted to ensure safe tortoise access, for example, by filling eroded drop-offs or modifying erosion-control features such as rip-rap to make them safer and more passable for tortoises. Wildlife management agencies could work with transportation departments to develop construction standards that are consistent with hydrologic/erosion management goals, while also incorporating a design and materials consistent with tortoise survival and passage and make the standards widely available. The process would be most effective if the status of passages was regularly monitored and built into management plans. Healthy tortoise populations along fenced highways could be supported by ensuring that land inside tortoise-exclusion fences is not so degraded that it leads to degradation of tortoise habitat outside the exclusion areas. For example, severe invasive plant infestations inside a highway exclusion could cause an increase of invasive plants outside the exclusion area and degrade habitat; therefore, invasive plants inside road rights of way could be mown or treated with herbicide to limit their spread into adjacent tortoise habitat and minimize the risk of these plants carrying wildfires into adjacent habitat. Adaptation of management based on new information . Future research will continue to build upon and refine models related to desert tortoise population connectivity and develop new ones. New models could consider landscape levels of development and be constructed such that they share common foundations to support future synthesis efforts. If model development was undertaken in partnership with entities that are responsible for management of desert tortoise habitat, it would facilitate incorporation of current and future modeling results into their land management decisions. There are specific topics that may be clarified with further evaluation: The effects of climate change on desert tortoise habitat, distribution, and population connectivity; The effects of large-scale fires, especially within repeatedly burned habitat, on desert tortoise distribution and population connectivity; The ability of solar energy facilities or similar developments to support tortoise movement and presence by leaving washes intact; leaving native vegetation intact whenever possible, or if not possible, mowing the site, allowing vegetation to re-sprout, and managing weeds; and allowing tortoises to occupy the sites; and The design and frequency of underpasses necessary to maintain functional demographic and genetic connectivity across linear features, like highways.

Arizona, California, Nevada↗

USGS2025

Streamflow as a stressor: Disentangling hydrology and water quality impacts to characterize flow-ecology relationships for two stream assemblages across two southeastern landscapes

Disassociating the independent effects of flow and water quality on the ecology of flowing waters is an overarching goal in water resource science needed to improve the efficacy of watershed management. However, the interrelatedness of these gradients and their subsequent alteration due to land use change has constrained progress made on this front. The objective of this study was to use benthic macroinvertebrate and fish assemblage data to characterize flow-ecology relationships that were unchanged by water quality impacts across two southeastern landscapes in the USA to help detect ecological change driven by flow alteration. General linear latent models were used to identify taxa that were responsive to high or low flow metrics and water quality gradients. Bayesian hierarchical generalized additive models were then developed using these indicator taxa and three biological metrics to identify flow-specific relationships that were unaffected by water quality impacts. Three low flow-specific relationships were identified, illustrating how potential agricultural or urban impacts to hydrology reduced stream biological health. Importantly, flow-ecology relationships developed using indicator taxa in this study effectively captured hydrology-specific impacts while biological metrics typical of state monitoring and assessment programs did not. Therefore, developing flow-specific biological metrics is a critical step when developing management strategies targeting flow alteration. Implementing standardized frameworks such as the one characterized here can limit contradictory findings and improve streamflow enhancement and restoration project efficacy. These low flow-specific relationships will enhance managers' capacity to develop environmental flow standards, monitor their success, and better understand urban and agricultural impacts on stream assemblages.

Alabama↗

USGS2023

Whole-lake acoustic telemetry to evaluate survival of stocked juvenile fish

Estimates of juvenile survival are critical for informing population dynamics and the ecology of fish, yet these demographic parameters are difficult to measure. Here, we demonstrate that advances in animal tracking technology provide opportunities to evaluate survival of juvenile tagged fish. We implemented a whole-lake telemetry array in conjunction with small acoustic tags (including tags < 1.0 g) to track the fate of stocked juvenile cisco ( Coregonus artedi ) as part of a native species restoration effort in the Finger Lakes region of New York, USA. We used time-to-event modeling to characterize the survival function of stocked fish, where we infer mortality as the cessation of tag detections. Survival estimates revealed distinct stages of juvenile cisco mortality including high immediate post-release mortality, followed by a period of elevated mortality during an acclimation period. By characterizing mortality over time, the whole-lake biotelemetry effort provided information useful for adapting stocking practices that may improve survival of stocked fish, and ultimately the success of the species reintroduction effort. The combination of acoustic technology and time-to-event modeling to inform fish survival may have wide applicability across waterbodies where receiver arrays can be deployed at scale and where basic assumptions about population closure can be satisfied.

New York↗

USGS2019

Transient population dynamics impede restoration and may promote ecosystem transformation after disturbance

The apparent failure of ecosystems to recover from increasingly widespread disturbance is a global concern. Despite growing focus on factors inhibiting resilience and restoration, we still know very little about how demographic and population processes influence recovery. Using inverse and forward demographic modelling of 531 post‐fire sagebrush populations across the western US, we show that demographic processes during recovery from seeds do not initially lead to population growth but rather to years of population decline, low density, and risk of extirpation after disturbance and restoration, even at sites with potential to support long‐term, stable populations. Changes in population structure, and resulting transient population dynamics, lead to a > 50% decline in population growth rate after disturbance and significant reductions in population density. Our results indicate that demographic processes influence the recovery of ecosystems from disturbance and that demographic analyses can be used by resource managers to anticipate ecological transformation risk.

Ecology Letters↗

USGS2016

Effects of microhabitat and large-scale land use on stream salamander occupancy in the coalfields of Central Appalachia

Large-scale coal mining practices, particularly surface coal extraction and associated valley fills as well as residential wastewater discharge, are of ecological concern for aquatic systems in central Appalachia. Identifying and quantifying alterations to ecosystems along a gradient of spatial scales is a necessary first-step to aid in mitigation of negative consequences to aquatic biota. In central Appalachian headwater streams, apart from fish, salamanders are the most abundant vertebrate predator that provide a significant intermediate trophic role linking aquatic and terrestrial food webs. Stream salamander species are considered to be sensitive to aquatic stressors and environmental alterations, as past research has shown linkages among microhabitat parameters, large-scale land use such as urbanization and logging, and salamander abundances. However, there is little information examining these relationships between environmental conditions and salamander occupancy in the coalfields of central Appalachia. In the summer of 2013, 70 sites (sampled two to three times each) in the southwest Virginia coalfields were visited to collect salamanders and quantify stream and riparian microhabitat parameters. Using an information-theoretic framework, effects of microhabitat and large-scale land use on stream salamander occupancy were compared. The findings indicate that Desmognathus spp. occupancy rates are more correlated to microhabitat parameters such as canopy cover than to large-scale land uses. However, Eurycea spp . occupancy rates had a strong association with large-scale land uses, particularly recent mining and forest cover within the watershed. These findings suggest that protection of riparian habitats is an important consideration for maintaining aquatic systems in central Appalachia. If this is not possible, restoration riparian areas should follow guidelines using quick-growing tree species that are native to Appalachian riparian areas. These types of trees would rapidly establish a canopy cover, stabilize the soil, and impede invasive plant species which would, in turn, provide high-quality refuges for stream salamanders.

Journal of Ecology and the Natural Environment↗

USGS2026

Satellite time series analysis to quantify changing climax ciénegas using a state and transition model approach

Ciénegas are rare wetlands in arid landscapes of the North American Southwest, historically providing critical ecological and hydrological functions but increasingly threatened by changing climate and land use pressures. This study quantifies changes in ciénega condition and floodplain dynamics using a state-and-transition model (STM) informed by expert knowledge and remote sensing. Key factors include woody plant encroachment, water availability, and soil aggradation. We mapped 31 ciénegas with high-resolution imagery and analyzed Landsat data (1985–2023) to assess vegetation health and moisture using the Normalized Difference Vegetation Index (NDVI) and Normalized Difference Infrared Index (NDII). Results show substantial interannual variability in phenology, water stress, and soil moisture, with regional drying and elevation strongly influencing ciénega resilience. We classified ciénegas into three functional states—healthy, desiccated, and dormant—and mapped their 2023 condition. Trend analyses indicate most ciénegas exhibit greening despite drought, though localized variability underscores the need for site-specific management. None are in a stable climax (reference) state; rather, they transition among states in response to external drivers. Increasing woody plant cover and surface drying, likely linked to declining regional water tables, favor deep-rooted species over wetland grasses—a pattern mirrored in adjacent control plots. Spatially explicit analysis revealed intra-ciénega variability often masked by aggregated data, highlighting the importance of high-resolution monitoring. Seasonal and long-term trends provide context for understanding ciénega dynamics, including degradation and restoration pathways. This study emphasizes the importance of groundwater conservation and demonstrates how remote sensing supports long-term monitoring. The STM framework offers a practical tool for adaptive management to sustain freshwater resources in arid environments.

Arizona, New Mexico↗

USGS2026

At the edge of change: Native Phragmites persistence and nonnative arrival along the dam-regulated Colorado River

Premise The southwestern United States is at the forefront of nonnative Phragmites australis subsp. australis expansion. Native Phragmites australis subsp. americanus , likely in decline in North America, is ecologically and culturally important and of conservation interest. In the greater Grand Canyon region, the Glen Canyon Dam led to loss of habitat upstream and increases in Phragmites downstream. Recent increases correspond with changes to dam operations and the arrival of nonnative Phragmites . Determining the native status of Phragmites stands along the Colorado River and around Lake Powell can inform complex management choices and restoration planning. Methods Phragmites subspecies at 83 locations from southern Utah through northern Arizona, United States were genetically tested using real-time PCR. Genetic diversity and structure were assessed using microsatellite loci for 13 native Phragmites stands. Morphological traits of southwestern native Phragmites were compared to those of nonnative Phragmites . Results Nonnative Phragmites was identified at four of the 83 locations. Native Phragmites in the study area is genetically diverse with little regional genetic structure, but substantial genetic differentiation among sites. Southwestern native Phragmites is morphologically variable, but characteristics can be used together to distinguish it from nonnative Phragmites . Conclusions The greater Grand Canyon and Glen Canyon regions support a large, genetically diverse native Phragmites population, which is potentially threatened by nonnative Phragmites and changes to river management. Determining conditions that would lead to nonnative Phragmites invasion of desert wetlands will facilitate discussions about the risks and benefits of Phragmites management in these unique ecosystems.

Arizona, Nevada, Utah↗