SEARCH · Geology Reports

Results for “Bird Populations”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,171 records · Page 65Linked to original sources

USGS2013

Population genetics and evaluation of genetic evidence for subspecies in the Semipalmated Sandpiper (Calidris pusilla)

Semipalmated Sandpipers ( Calidris pusilla ) are among the most common North American shorebirds. Breeding in Arctic North America, this species displays regional differences in migratory pathways and possesses longitudinal bill length variation. Previous investigations suggested that genetic structure may occur within Semipalmated Sandpipers and that three subspecies corresponding to western, central, and eastern breeding groups exist. In this study, mitochondrial control region sequences and nuclear microsatellite loci were used to analyze DNA of birds (microsatellites: n = 120; mtDNA: n = 114) sampled from seven North American locations. Analyses designed to quantify genetic structure and diversity patterns, evaluate genetic evidence for population size changes, and determine if genetic data support the existence of Semipalmated Sandpiper subspecies were performed. Genetic structure based only on the mtDNA data was observed, whereas the microsatellite loci provided no evidence of genetic differentiation. Differentiation among locations and regions reflected allele frequency differences rather than separate phylogenetic groups, and similar levels of genetic diversity were noted. Combined, the two data sets provided no evidence to support the existence of subspecies and were not useful for determining migratory connectivity between breeding sites and wintering grounds. Birds from western and central groups displayed signatures of population expansions, whereas the eastern group was more consistent with a stable overall population. Results of this analysis suggest that the eastern group was the source of individuals that colonized the central and western regions currently utilized by Semipalmated Sandpipers.

Waterbirds↗

USGS2013

Population genetic structure of rare and endangered plants using molecular markers

This study was initiated to assess the levels of genetic diversity and differentiation in the remaining populations of Phyllostegia stachyoides and Melicope zahlbruckneri in Hawai`i Volcanoes National Park and determine the extent of gene flow to identify genetically distinct individuals or groups for conservation purposes. Thirty-six Amplified Fragment Length Polymorphic (AFLP) primer combinations generated a total of 3,242 polymorphic deoxyribonucleic acid (DNA) fragments in the P. stachyoides population with a percentage of polymorphic bands (PPB) ranging from 39.3 to 65.7% and 2,780 for the M. zahlbruckneri population with a PPB of 18.8 to 64.6%. Population differentiation (Fst) of AFLP loci between subpopulations of P. stachyoides was low (0.043) across populations. Analysis of molecular variance of P. stachyoides showed that 4% of the observed genetic differentiation occurred between populations in different k ī puka and 96% when individuals were pooled from all k ī puka. Moderate genetic diversity was detected within the M. zahlbruckneri population. Bayesian and multivariate analyses both classified the P. stachyoides and M. zahlbruckneri populations into genetic groups with considerable sub-structuring detected in the P. stachyoides population. The proportion of genetic differentiation among populations explained by geographical distance was estimated by Mantel tests. No spatial correlation was found between genetic and geographic distances in both populations. Finally, a moderate but significant gene flow that could be attributed to insect or bird-mediated dispersal of pollen across the different k ī puka was observed. The results of this study highlight the utility of a multi-allelic DNA-based marker in screening a large number of polymorphic loci in small and closely related endangered populations and revealed the presence of genetically unique groups of individuals in both M. zahlbruckneri and P. stachyoides populations. Based on these findings, approaches that can assist conservation efforts of these species are proposed.

Hawai`i↗

USGS2017

Use of North American Breeding Bird Survey data in avian conservation assessments

Conservation resources are limited, and prioritizing species based on their relative vulnerability and risk of extinction is a fundamental component of conservation planning. In North America, the conservation consortium Partners in Flight (PIF) has developed and implemented a data-driven species assessment process, at global and regional scales, based on quantitative vulnerability criteria. This species assessment process has formed the biological basis for PIF's continental and regional planning and has informed the ranking and legal listing of bird species for conservation protection by state, provincial, and national agencies in Canada, the U.S., and Mexico. Because of its long time series, extensive geographic and species coverage, standardized survey methods, and prompt availability of results, the North American Breeding Bird Survey (BBS) has been an invaluable source of data, allowing PIF to assign objective vulnerability scores calibrated across more than 460 landbird species. BBS data have been most valuable for assessing long-term population trends (PT score). PIF has also developed methods for estimating population size by extrapolating from BBS abundance indices, allowing the assignment of categorical population size (PS) scores for landbird species. At regional scales, BBS relative abundance indices have allowed PIF to assess the area importance (i.e. stewardship responsibility) of each Bird Conservation Region (BCR) for each species, using measures of both relative density and percent of total population in each BCR. Besides direct applicability to assessment scores, PIF has recently used BBS trend data to create new metrics of conservation urgency (e.g., ‘half-life'), as well as for setting population objectives for tracking progress toward meeting conservation goals. Future directions include integrating BBS data with other sources (e.g., eBird) to assess additional species and nonbreeding season measures, working closely with BBS coordinators to expand surveys into Mexico, and providing assessment scores at implementation-relevant scales, such as for migratory bird joint ventures.

The Condor↗

USGS1976

Comments on recent canvasback habitat trends and threats on Chesapeake Bay

During the last 22 years, the North American winter population of canvasbacks has fluctuated from 481,000 in 1955 to 179,000 in 1972. The Chesapeake Bay population has averaged 33 percent of the North American population and 64 percent of the Atlantic Flyway population. In Maryland, significant annual fluctuations have been recorded between the eastern and western shore of Chesapeake Bay. In 1968, 11 percent of the Bay canvasbacks were on the western shore, whereas in 1971, 87 percent of the birds wintered in this area. This increase in 1971 is believed to be in response to large populations of small Rangia cuneata clams. I n recent years, mortality of small clams and reduced spawning have resulted in a larger size class for Rangia making them less desirable as a waterfowl food. Canvasback populations in 1975 and 1976 were more dispersed in Chesapeake Bay when the predominant food of canvasbacks was Macoma balthica. In the last 5 years, the number of canvasbacks wintering in Chesapeake Bay has declined slightly, while the North American and Atlantic Flyway populations have increased. Increases have been noted in New Jersey and North Carolina. This trend may indicate that the quality of canvasback habitat in Chesapeake Bay is declining at a faster rate than other areas along the Atlantic coast.

Book chapter↗

USGS2019

Movements of immature bald eagles: Implications for bird aircraft strike hazard

Bald eagle (Haliaeetus leucocephalus) aircraft strikes have increased dramatically over the last 20 years as their populations have recovered to near historic sizes. Their attraction to airfields and their large body size makes them a danger to aircraft and therefore important to airfield wildlife managers. However, their management is complicated by their special protected status and the iconic place they hold in the eyes of the public. To help airfield wildlife managers plan monitoring efforts and make informed management decisions, we studied the movements of 32 bald eagles telemetered as nestlings in the Chesapeake Bay of Virginia, USA. Managers often need to know when fledged eagles are most likely to move enough to encounter airfields near nests. As fledglings aged they moved progressively farther from the nest and spent more time away from the nest. Twenty-eight days after fledging, eagles spent most of the day (81±10%, 95% confidence interval) near the nest (<500 m) and only 7±7% of the daytime away from the nest (>1 km). By day 53 fledglings ventured beyond 2.5 km from the nest and spent 30 ± 15% the day >1 km away from their nest. However, distances moved were influenced by proximity of the nest to water, the quality and salinity of that water, and human population density. Eagles left their natal areas and generally migrated out of the Chesapeake Bay 60.5 ± 7.7 days (4 August) after fledging and returned to the Chesapeake Bay approximately 225 days later (March-April). Eighty-four percent (27 of 32) of the eagles that we tracked encountered 164 airfields across the east coast with 91% of those airfields located within 10 km of the Chesapeake Bay. Encounters with airfields outside the Chesapeake Bay occurred mainly during the first 1.5 years of life, peaking in late fall and early spring. Eagles were recorded on Chesapeake Bay airfields during each year, but encounters peaked in April of the first year of the bird’s life. This month coincides with the height of reported strikes of eagles by aircraft in the region. Our results suggest that eagles fledging from the Chesapeake Bay are not only an issue for airports near the Chesapeake Bay, but for airports across the east coast. Given the continued growth of the population, this issue is likely to continue and grow in significance.

Virginia↗

USGS1995

Demography of birds in a neotropical forest: Effects of allometry, taxonomy, and ecology

Comparative demographic studies of terrestrial vertebrates have included few samples of species from tropical forests. We analyzed 9 yr of mark—recapture data and estimated demographic parameters for 25 species of birds inhabiting lowland forests in central Panama. These species were all songbirds (Order Passeriformes) ranging in mass from 7 to 57 g. Using Jolly—Seber stochastic models for open populations, we estimated annual survival rate, population size, and recruitment between sampling periods for each species. We then explored relationships between these parameters and attributes such as body size, phylogenetic affiliation, foraging guild, and social behavior. Larger birds had comparatively long life—spans and low recruitment, but body size was not associated with population size. After adjusting for effects of body size, we found no association between phylogenetic affiliation and any demographic trait. Ecological attributes, especially foraging guild, were more clearly associated with interspecific variation in all demographic traits. Ant—followers had comparatively long life—spans, but species that participate in flocks did not live longer than solitary species. The allometric associations we observed were consistent with those demonstrated in other studies of vertebrates; thus, these relationships appear to be robust. Our findings that ecological factors were more influential than phylogenetic affiliation contrasts with comparative studies of temperate—zone birds and suggests that the relative importance of environmental vs. historical factors varies geographically.

Ecology↗

USGS2010

Subspecies status and population genetic structure in Piping Plover ( Charadrius melodus )

Piping Plover (Charadrius melodus) is a migratory shorebird that is listed as endangered in Canada and the U.S. Great Lakes and as threatened throughout the rest of its breeding and winter range. We undertook a comprehensive molecular-genetic investigation to (1) address subspecific taxonomy, (2) characterize population genetic structure, and (3) infer past bottlenecks and demographic processes in this species. Analyses included individuals from 23 U.S. states and Canadian provinces and were based on mitochondrial DNA sequences (580 base pairs, n = 245) and 8 nuclear microsatellite loci (n = 229). Our findings provide support for separate Atlantic and Interior subspecies (C. m. melodus and C. m. circumcinctus, respectively). Birds from the Great Lakes region were allied with the Interior subspecies and should be referred to as C. m. circumcinctus. Population genetic analyses illustrated stronger genetic structure among Atlantic than among Interior birds, which may reflect reduced natal- and breeding-site fidelity of Interior individuals. Furthermore, analyses suggested that Interior birds previously experienced genetic bottlenecks, whereas there was no evidence of such patterns in the Atlantic subspecies. We interpret these results in light of 25 years of range-wide census data. Overall, differences between Interior and Atlantic Piping Plovers may reflect differences in spatiotemporal stability of nesting habitat between regions. ?? 2010 The American Ornithologists' Union.

The Auk↗

USGS2015

Colonial waterbird predation on Lost River and shortnose suckers based on recoveries of passive integrated transponder tags

We evaluated predation on Lost River suckers ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ), both listed under the Endangered Species Act (ESA), from American white pelicans ( Pelecanus erythrorhynchos ) and double-crested cormorants ( Phalacrocorax auritus ) nesting at mixed species colonies on Clear Lake Reservoir, CA and Upper Klamath Lake, OR during 2009-2014. Predation was evaluated by recovering passive integrated transponder (PIT) tags that were implanted in suckers, subsequently consumed by pelicans or cormorants, and deposited on the birds’ nesting colonies. Data from PIT tag recoveries were used to estimate predation rates (proportion of available tagged suckers consumed) by birds to evaluate the relative susceptibility of suckers to avian predation in Upper Klamath Basin. Data on the size of pelican and cormorant colonies (number of breeding adults) at Clear Lake and Upper Klamath Lake were also collected and reported in the context of predation on suckers. Results indicate that predation rates varied by sucker species (Lost River, shortnose), sucker age-class (adult, juvenile), bird colony location (Upper Klamath Lake, Clear Lake), and year (2009-2014), demonstrating that predator-prey interactions in the system were dynamic during the study period. Tagged suckers ranging from 72 mm to 730 mm were susceptible to cormorant or pelican predation; all but the largest of the tagged Lost River suckers were susceptible to avian predation. Estimates of minimum, annual predation rates ranged from <0.1% to 4.6% of the available Lost River suckers and from <0.1% to 4.2% of the available shortnose suckers during the study period. Of the two colony locations evaluated, predation rates on suckers in Clear Lake were generally higher by birds nesting at mixed-species colonies on Clear Lake. Birds nesting on Clear Lake also commuted over 75 kilometers to forage on suckers in Upper Klamath Lake. Conversely, there was no evidence that birds nesting in Upper Klamath Lake foraged on tagged suckers in Clear Lake. Although sample sizes of tagged juvenile suckers were small and limited to fish tagged in Upper Klamath Lake, there was evidence that bird predation on juvenile suckers was higher than on adult suckers, with annual predate rate estimates on juvenile suckers ranging from 5.7% to 8.4% of available fish. The minimum annual predation rates presented here suggests that avian predation may be a factor limiting recovery of populations of Lost River and shortnose suckers, particularly juvenile suckers in Upper Klamath Lake and adult suckers in Clear Lake. Additional research is needed, however, to better assess the impacts of avian predation on sucker populations by (1) recovering PIT tags in a manner so that the species of avian predator is known (i.e., pelican vs. cormorant), (2) measuring predator-specific PIT tag deposition probabilities at each colony, (3) increasing the sample of juvenile suckers in the population that are PIT-tagged, and (4) recovering sufficient sample sizes of PIT tags on bird colonies to describe how various biotic and abiotic factors (e.g., fish size and condition, water levels and quality, and other factors) contribute to sucker susceptibility to avian predation in the Upper Klamath Basin.

California, Oregon↗

USGS2008

Translocation and early post-release demography of endangered Laysan teal

In an attempt to reduce the high extinction risk inherent to small island populations, we translocated wild Laysan teal Anas laysanensis to a portion of its presumed prehistoric range. Most avian translocations lack the strategic post-release monitoring needed to assess early population establishment or failure. Therefore, we monitored the survival and reproduction of all founders, and their first-generation offspring using radio telemetry for 2 years after the first release. Forty-two Laysan teal were sourced directly from the only extant population on Laysan Island and transported 2 days by ship to Midway Atoll. All birds survived the translocation with nutritional and veterinary support, and spent between 4 and 14 days in captivity. Post-release survival of 42 founders was 0.857 (95% CI 0.86-0.99) during 2004-2006 or annualized 0.92 (95% CI 0.83-0.98). Seventeen of 18 founding hens attempted nesting in the first two breeding seasons. Fledgling success was 0.57 (95% CI 0.55-0.60) in 2005 and 0.63 (95% CI 0.62-0.64) in 2006. The effective founding female population (Ne) was 13. We applied these initial demographic rates to model population growth. The nascent population size increased to >100 after only 2 years post-release (?? = 1.73). If this growth rate continues, the size of the Midway population could surpass the source population before 2010. ?? 2008 The Authors. Journal compilation ?? 2008 The Zoological Society of London.

Animal Conservation↗

USGS2018

A full annual-cycle conservation strategy for Sprague’s Pipit, Chestnut-collared and McCown’s Longspurs, and Baird’s Sparrow

Sprague’s Pipit ( Anthus spragueii ), Chestnut-collared Longspur ( Calcarius ornatus ), McCown’s Longspur ( Rhynchophanes mccownii ), and Baird’s Sparrow ( Centronyx bairdii ) [hereafter, “the Species”] are North American grassland-obligate songbirds whose populations have experienced significant annual population declines and are the focus of increasing conservation concern. The purpose of this strategy is to summarize current knowledge of the Species and identify priority research, monitoring and conservation actions required to improve their population status. Grasslands are among the most threatened ecosystems in the world with historic losses of 61-70% converted to other land uses, primarily cropland agriculture. Losses continue, with current conversion in the northern Great Plains occurring several times faster than grasslands can be protected. The Partners in Flight North American Landbird Conservation Plan (PIF NALCP) estimates current global populations of 900,000, 3,000,000, 600,000, and 2,000,000 for Sprague’s Pipit, Chestnut-collared Longspur, McCown’s Longspur, and Baird’s Sparrow, respectively. Over the period of 1967-2015, these populations have declined at -3.1, -4.2, -5.9 and -2.2% annually for estimated total losses of 78, 87, 94 and 65%, respectively. Habitat associations of breeding birds, especially at the local scale, represent the majority of the existing scientific literature on the Species’ biology. Landscape-scale associations are more poorly understood, and few studies have linked habitat, at any scale, to population vital rates. Increasing effort is focused on nonbreeding season and very little is known about migration. Current knowledge identifies three primary threats: 1) loss of native grasslands, 2) degradation and fragmentation of remaining native grasslands, and 3) disturbance inconsistent with needs of the Species. Top priorities for future research include: identification of population limiting factors, links between breeding habitat and demographics, identification of migratory habitat requirements, and identification of conditions promoting winter survival. Implementation strategies must focus on the protection, restoration, and enhancement (i.e., management) of grassland communities. Most imperative is the protection of remaining native grasslands from conversion to other uses. Actions supporting grass-based agriculture on privately-owned, native grasslands are paramount. These include incentive-based tools to support livestock grazing that benefits both priority birds and healthy ranching communities, which in turn prevent the conversion of native grasslands to cropland. Where cropland conversion has already taken place, conservation partners should work to continue and improve programs such as the Conservation Reserve Program (CRP) to restore and maintain permanent native cover. This strategy adopts the PIF NALCP objective, which is to reduce the rate of the Species’ decline in the first 10 years, then stabilize and ultimately increase the 2016 population by 5-15% over the subsequent 20 years. Ongoing monitoring programs such as the Breeding Bird Survey, Integrated Monitoring of Bird Conservation Regions, and eBird are critical for informing broadscale demographic and geographic trends for the Species. However, to achieve PIF NALCP goals, there is additional need for monitoring that links habitat conservation accomplishments to population performance within a strategic habitat conservation framework.

Report↗

USGS2016

Flexible risk metrics for identifying and monitoring conservation-priority species

Region-specific conservation programs should have objective, reliable metrics for species prioritization and progress evaluation that are customizable to the goals of a program, easy to comprehend and communicate, and standardized across time. Regional programs may have vastly different goals, spatial coverage, or management agendas, and one-size-fits-all schemes may not always be the best approach. We propose a quantitative and objective framework for generating metrics for prioritizing species that is straightforward to implement and update, customizable to different spatial resolutions, and based on readily available time-series data. This framework is also well-suited to handling missing-data and observer error. We demonstrate this approach using North American Breeding Bird Survey (NABBS) data to identify conservation priority species from a list of over 300 landbirds across 33 bird conservation regions (BCRs). To highlight the flexibility of the framework for different management goals and timeframes we calculate two different metrics. The first identifies species that may be inadequately monitored by NABBS protocols in the near future (TMT, time to monitoring threshold), and the other identifies species likely to decline significantly in the near future based on recent trends (TPD, time to percent decline). Within the individual BCRs we found up to 45% (mean 28%) of the species analyzed had overall declining population trajectories, which could result in up to 37 species declining below a minimum NABBS monitoring threshold in at least one currently occupied BCR within the next 50 years. Additionally, up to 26% (mean 8%) of the species analyzed within the individual BCRs may decline by 30% within the next decade. Conservation workers interested in conserving avian diversity and abundance within these BCRs can use these metrics to plan alternative monitoring schemes or highlight the urgency of those populations experiencing the fastest declines. However, this framework is adaptable to many taxa besides birds where abundance time-series data are available.

Ecological Indicators↗

USGS2020

Nest site selection influences cinnamon teal nest survival in Colorado

Nest survival of ducks is partially a function of the spatiotemporal characteristics of the site at which a bird chooses to nest. Nest survival is also a fundamental component of population growth in waterfowl but is relatively unstudied for cinnamon teal ( Spatula cyanoptera ). We investigated cinnamon teal nest survival in a managed wetland complex in southern Colorado, USA, and assessed nest site selection to determine whether nest site characteristics were adaptive. We monitored 85 nests in 2015–2017 on Monte Vista National Wildlife Refuge, Colorado and did not detect a difference in nest survival across years. Based on nest site selection data from 2017, cinnamon teal selected nest sites characterized by a lower proportion of forbs than available sites. The relationships between habitat characteristics and nest survival were variable. Microhabitat characteristics exhibited only weak effects on nest survival during the laying stage. Nest survival during incubation was negatively related to the proportion of forbs at the nest site and, to a lesser extent, the proportion of grasses. Nest site selection was predictive of future nest survival based on the percent of forbs and grasses around the nest site, suggesting teal select nest locations to benefit reproductive success. These results have the potential to guide local habitat management actions for breeding waterfowl.

Colorado↗

USGS2012

A matter of tradeoffs: reintroduction as a multiple objective decision

Decision making in guidance of reintroduction efforts is made challenging by the substantial scientific uncertainty typically involved. However, a less recognized challenge is that the management objectives are often numerous and complex. Decision makers managing reintroduction efforts are often concerned with more than just how to maximize the probability of reintroduction success from a population perspective. Decision makers are also weighing other concerns such as budget limitations, public support and/or opposition, impacts on the ecosystem, and the need to consider not just a single reintroduction effort, but conservation of the entire species. Multiple objective decision analysis is a powerful tool for formal analysis of such complex decisions. We demonstrate the use of multiple objective decision analysis in the case of the Florida non-migratory whooping crane reintroduction effort. In this case, the State of Florida was considering whether to resume releases of captive-reared crane chicks into the non-migratory whooping crane population in that state. Management objectives under consideration included maximizing the probability of successful population establishment, minimizing costs, maximizing public relations benefits, maximizing the number of birds available for alternative reintroduction efforts, and maximizing learning about the demographic patterns of reintroduced whooping cranes. The State of Florida engaged in a collaborative process with their management partners, first, to evaluate and characterize important uncertainties about system behavior, and next, to formally evaluate the tradeoffs between objectives using the Simple Multi-Attribute Rating Technique (SMART). The recommendation resulting from this process, to continue releases of cranes at a moderate intensity, was adopted by the State of Florida in late 2008. Although continued releases did not receive support from the International Whooping Crane Recovery Team, this approach does provide a template for the formal, transparent consideration of multiple, potentially competing, objectives in reintroduction decision making.

Journal of Wildlife Management↗

USGS2011

Summary of intrinsic and extrinsic factors affecting detection probability of marsh birds

Many species of marsh birds (rails, bitterns, grebes, etc.) rely exclusively on emergent marsh vegetation for all phases of their life cycle, and many organizations have become concerned about the status and persistence of this group of birds. Yet, marsh birds are notoriously difficult to monitor due to their secretive habits. We synthesized the published and unpublished literature and summarized the factors that influence detection probability of secretive marsh birds in North America. Marsh birds are more likely to respond to conspecific than heterospecific calls, and seasonal peak in vocalization probability varies among co-existing species. The effectiveness of morning versus evening surveys varies among species and locations. Vocalization probability appears to be positively correlated with density in breeding Virginia Rails ( Rallus limicola ), Soras ( Porzana carolina ), and Clapper Rails ( Rallus longirostris ). Movement of birds toward the broadcast source creates biases when using count data from call-broadcast surveys to estimate population density. Ambient temperature, wind speed, cloud cover, and moon phase affected detection probability in some, but not all, studies. Better estimates of detection probability are needed. We provide recommendations that would help improve future marsh bird survey efforts and a list of 14 priority information and research needs that represent gaps in our current knowledge where future resources are best directed.

Wetlands↗

USGS2013

Habitat selection by juvenile Swainson’s thrushes ( Catharus ustulatus ) in headwater riparian areas, northwestern Oregon, USA

Lower order, non-fish-bearing streams, often termed “headwater streams”, have received minimal research effort and protection priority, especially in mesic forests where distinction between riparian and upland vegetation can be subtle. Though it is generally thought that breeding bird abundance is higher in riparian zones, little is known about species distributions when birds are in their juvenile stage – a critical period in terms of population viability. Using radio telemetry, we examined factors affecting habitat selection by juvenile Swainson’s thrushes during the post-breeding period in headwater basins in the Coast Range of Oregon, USA. We tested models containing variables expected to influence the amount of food and cover (i.e., deciduous cover, coarse wood volume, and proximity to stream) as well as models containing variables that are frequently measured and manipulated in forest management (i.e., deciduous and coniferous trees separated into size classes). Juvenile Swainson’s thrushes were more likely to select locations with at least 25% cover of deciduous, mid-story vegetation and more than 2.0 m 3 /ha of coarse wood within 40 m of headwater streams. We conclude that despite their small and intermittent nature, headwater streams and adjacent riparian areas are selected over upland areas by Swainson’s thrush during the postfledging period in the Oregon Coast Range.

Oregon↗

USGS2023

Trends and population estimate of the threatened Buff-breasted Sandpiper Calidris subruficollis wintering in coastal grasslands of southern Brazil

Information about population sizes, trends, and habitat use is key for species conservation and management. The Buff-breasted Sandpiper Calidris subruficollis (BBSA) is a long-distance migratory shorebird that breeds in the Arctic and migrates to south-eastern South America, wintering in the grasslands of southern Brazil, Uruguay, and Argentina. Most studies of Nearctic migratory species occur in the Northern Hemisphere, but monitoring these species at non-breeding areas is crucial for conservation during this phase of the annual cycle. Our first objective was to estimate trends of BBSA at four key areas in southern Brazil during the non-breeding season. We surveyed for BBSA and measured vegetation height in most years from 2008/09 to 2019/20. We used hierarchical distance sampling models in which BBSA abundance and density were modelled as a function of vegetation height and corrected for detectability. Next, we used on-the-ground surveys combined with satellite imagery and habitat classification models to estimate BBSA population size in 2019/20 at two major non-breeding areas. We found that abundance and density were negatively affected by increasing vegetation height. Abundance fluctuated five- to eight-fold over the study period, with peaks in the middle of the study (2014/15). We estimated the BBSA wintering population size as 1,201 (95% credible interval [CI]: 637–1,946) birds in Torotama Island and 2,232 (95% CI: 1,199–3,584) in Lagoa do Peixe National Park during the 2019/20 austral summer. Although no pronounced trend was detected, BBSA abundance fluctuated greatly from year to year. Our results demonstrate that only two of the four key areas hold high densities of BBSA and highlight the positive effect of short grass on BBSA numbers. Short-grass coastal habitats used by BBSA are strongly influenced by livestock grazing and climate, and are expected to shrink in size with future development and climatic changes.

Bird Conservation International↗

USGS2014

Respiratory transmission of an avian H3N8 influenza virus isolated from a harbour seal

The ongoing human H7N9 influenza infections highlight the threat of emerging avian influenza viruses. In 2011, an avian H3N8 influenza virus isolated from moribund New England harbour seals was shown to have naturally acquired mutations known to increase the transmissibility of highly pathogenic H5N1 influenza viruses. To elucidate the potential human health threat, here we evaluate a panel of avian H3N8 viruses and find that the harbour seal virus displays increased affinity for mammalian receptors, transmits via respiratory droplets in ferrets and replicates in human lung cells. Analysis of a panel of human sera for H3N8 neutralizing antibodies suggests that there is no population-wide immunity to these viruses. The prevalence of H3N8 viruses in birds and multiple mammalian species including recent isolations from pigs and evidence that it was a past human pandemic virus make the need for surveillance and risk analysis of these viruses of public health importance.

Nature Communications↗

USGS2010

Can lowland dry forests represent a refuge from avian malaria for native Hawaiian birds?

Hawaii's native birds have become increasingly threatened over the past century. Introduced mosquito borne diseases such as avian malaria may be responsible for the near absence of endemic Hawaiian forest birds in low-elevation habitats. The recent recognition that some native Hawaiian forest birds may be repopulating moist lowland habitats as a result of evolved resistance to this disease has increased the conservation value of these areas. Here, we investigate whether remnant low elevation dry forests on Hawaii Island provide natural 'refuges' from mosquito-transmitted malaria by nature of their low rainfall and absence of suitable natural sources of water for mosquito breeding. Unlike lowland wet forests where high rates of disease transmission may be selecting for disease resistance, lowland dry forests may provide some refuge for native forest birds without natural resistance to malaria. We mistnetted forest birds in two lowland dry forests and tested all native birds by microscopy and serology for avian malaria caused by the Plasmodium relictum parasite. We also conducted surveys for standing water and mosquito larvae. Overall prevalence of infections with Plasmodium relictum in the Hawaii Amakihi Hemignathus virens virens was 15%. Most infected birds had lowlevel parasitemias, suggesting chronic infections. Although avian malaria is present in these lowland dry forest Amakihi populations, infection rates are significantly lower than in wet forest populations at similar elevations. Sources of breeding mosquitoes in these forests appeared to be largely anthropogenic; thus, there is potential to manage dry forests as mosquito-free habitat for Hawaii Amakihi and other Hawaiian forest birds.

Hawai'i↗