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At least 1,153 records · Page 64Linked to original sources
USGS2022

Using microbial source tracking to identify fecal contamination sources in Sag Harbor on Long Island, New York

The U.S. Geological Survey worked in cooperation with the New York State Department of Environmental Conservation to assess the potential sources of fecal contamination entering Sag Harbor, an embayment complex on the northern shore of the south fork of Suffolk County, Long Island, New York. Water samples are routinely collected by the New York State Department of Environmental Conservation in the harbor and analyzed for fecal coliform bacteria, an indicator of fecal contamination, to determine the need for closure of shellfish beds for harvest and consumption. Fecal coliform and other bacteria are an indicator of the potential presence of pathogenic (disease-causing) bacteria. However, indicator bacteria alone cannot determine the biological or geographical sources of contamination; therefore, microbial source tracking was implemented to determine various biological sources of contamination. In addition, information such as the location, weather and season, and surrounding land use where a sample was collected help determine the geographical source and conveyance of land-based water to the embayment. Analysis revealed that the most substantial source of fecal contamination to Sag Harbor was discharge from sites draining ponds and wetlands, particularly during the summer months. Fecal coliform bacteria at sites where ponds and wetlands drain are increased by stormwater runoff, which is another substantial source of fecal contamination. Human markers were detected in all four samples at the Sag Harbor Sewage Treatment Plant Outfall site but were associated with low fecal coliform concentrations, indicating that the sewage treatment plant is not a likely source of fecal contamination to the embayment. The Ligonee Brook Culvert, Paynes Creek near Marjorie Lane, and Otter Pond Culvert sites were identified as locations that contribute fecal contamination to Sag Harbor. These three locations had high fecal coliform bacteria concentrations in the summer, one of which was positive for canine microbial source tracking markers (Ligonee Brook Culvert), and another positive for waterfowl markers (Paynes Creek near Marjorie Lane). The absence of fecal coliform bacteria and human microbial source tracking markers in groundwater samples indicates that water from septic systems does not influence the harbor; however, elevated fecal coliform bacteria concentrations were not often detected. Further, the sandy sediment alongside Sag Harbor is unlikely to contribute fecal coliform bacteria when resuspended in the water column through tidal shifts or boat activity.

New York↗
USGS2022

Using microbial source tracking to identify fecal contamination sources in Lake Montauk on Long Island, New York

The U.S. Geological Survey worked in cooperation with the Concerned Citizens of Montauk and the New York State Department of Environmental Conservation to assess the potential sources of fecal contamination entering Lake Montauk, an artificial embayment on the tip of the southern fork of Suffolk County, Long Island, New York. Water samples are routinely collected by the New York State Department of Environmental Conservation in the harbor and analyzed for fecal coliform bacteria, an indicator of fecal contamination, to determine the need for closure of shellfish beds for harvest and consumption. Fecal coliform and other bacteria are an indicator of the potential presence of pathogenic (disease-causing) bacteria. However, indicator bacteria alone cannot determine the biological or geographical sources of contamination; therefore, microbial source tracking was implemented to determine various biological sources of contamination. In addition, information such as the location, weather and season, and surrounding land use where a sample was collected help determine the geographical source and conveyance of land-based water to the embayment. Overall, human and waterfowl markers were infrequently and sporadically present in source and receptor samples at low concentrations. By evaluating the microbial source tracking markers alongside fecal coliform data and land-use information, geographical sources of fecal contamination discharging from various source sites, such as culverts and ponds, were better differentiated. Analysis revealed that stormwater runoff and pond drainage were the most likely transport mechanisms for fecal contamination to Lake Montauk. When considering Lake Montauk as a whole, the highest frequency of fecal coliform detections in source site samples was found to be under wet summer conditions, as evidenced by the high fecal coliform concentrations at the South Beach, Stepping Stones Pond, and Stepping Stones Pond Culvert sites (300, 220, and more than 16,000 most probable number per 100 milliliters, respectively). No point sources of fecal coliform contamination to Lake Montauk were identified; however, receptor site samples adjacent to marinas (Lake Montauk Inlet and Star Island North sites) had a high frequency of human marker detections but were associated with fecal coliform concentrations at or below the reporting limit. The absence of fecal coliform and human microbial source tracking markers in groundwater samples indicated that water from septic systems did not influence the lake during this study. Further, the sandy sediment sample collected at the South Beach site was negative for all microbial source tracking markers and is unlikely to contribute fecal coliform from the tested host organisms when resuspended in the water column through tidal shifts or boat activity.

New York↗
USGS2023

Assessing Escherichia coli and microbial source tracking markers in the Rio Grande in the South Valley, Albuquerque, New Mexico, 2020–21

The Rio Grande, in southern Albuquerque, New Mexico, is a Clean Water Act Section 303(d) Category 5 impaired reach for Escherichia coli ( E. coli ). The reach is 5 miles in length, extending from Tijeras Arroyo south to the Isleta Pueblo boundary. An evaluation of E. coli and microbial source tracking markers (human-, canine-, and waterfowl-specific sources) was conducted by the U.S. Geological Survey to determine the extent and source of fecal bacteria within the impaired reach of the Rio Grande, primarily during the dry season (November through June) in 2020 and 2021. Samples were collected in the river cross section at three locations within each site and collected during both the dry season and the wet season, thereby providing data over a range of flow conditions to better understand the extent and source of fecal bacteria. Because fecal microorganisms may readily attach to sediments, riverbed material samples were also collected. During the dry season, E. coli concentrations in water were primarily detected below the New Mexico Surface Water Quality Standard of 410 colony forming units per 100 milliliters and mostly human and canine sources were detected. However, approximately 40 percent of the water samples exceeded the Isleta Pueblo water quality standard of 88 colony forming units per 100 milliliters. E. coli concentrations in bed material were detected at low concentrations, and the bed material was a sandy substrate, with little fine-grained material, a suitable habitat that would allow for bacterial growth during the dry season. Significant spatial and temporal differences, where p-values were less than 0.05, were found in water-quality samples for E. coli (seasonal) and the human tracker concentrations (between sites and within a cross section of a site). Given the lack of correlation between discharge and E. coli concentration and the human marker being most prevalent in the study area, the sources of E. coli in the dry season are likely nonpoint sources. The results from this study will help decision makers determine the efficacy of their best management practices and guide new practices to improve water quality in the reach.

New Mexico↗
USGS2023

Floodwater drainage assessment of Offutt Air Force Base, Nebraska, 2020–22

Offutt Air Force Base, south of Omaha, Nebraska, experienced major flooding during the March 2019 flood event because of the proximity of the base to the confluence of the Missouri River and nearby tributaries, which exceeded flood stages. Postflood, standing water remained through much of the year, attracting waterfowl and other birds and posing a major safety risk to aircraft. The U.S. Geological Survey, in cooperation with the U.S. Air Force, began a study in 2020 to describe the hydrologic processes that affect the persistence of standing water on Offutt Air Force Base. Existing site data, reviewed in concert with groundwater and surface-water elevation data collected for the study, indicate varying hydrologic responses between two areas of concern (AOCs), which can be linked to differences in subsurface geology and changes in flows of the Missouri River. An inundation map indicated that standing water would be present throughout Papillion Creek Ditch in AOC 1 and would extend upstream to AOC 2 during flow events greater than 771 cubic feet per second. A U.S. Army Corps of Engineers Hydrologic Engineering Center-River Analysis System model and a flow-duration analysis were used to infer that many of the surface-water drainage problems experienced in 2019 were the result of backwater conditions caused by higher streamflows in the Missouri River.

Nebraska↗
USGS2025

Microbial source tracking in Cedar and Crane Creeks near Curtice, Ohio, 2021

Elevated concentrations of Escherichia coli ( E. coli ) bacteria and signs of sewage lead to impairment of Cedar and Crane Creeks near the town of Curtice, Ohio. In 2021, the U.S. Geological Survey, in cooperation with Ohio Environmental Protection Agency, collected samples and analyzed them for concentrations of E. coli and microbial source tracking (MST) markers to help characterize the locations and sources of fecal contamination and better inform potential remediation strategies. The study included a total of 118 samples collected at 12 sites (6 on Cedar Creek and 6 on Crane Creek) from May to September 2021 during wet and dry weather conditions. All samples were analyzed for E. coli concentrations, and human and canine-associated MST markers. A subset of samples was analyzed for MST markers associated with swine, ruminant, cattle, horse, waterfowl, and poultry. Human-origin fecal contamination was found at all sites sampled in this study and concentrations of the human-associated MST marker HF183/BacR287 were significantly correlated with E. coli concentrations. The HF183/BacR287 marker was detected in 114 of 118 samples and the detection frequency in samples at each site ranged from 90 to 100 percent. E. coli concentrations exceeded the Ohio Environmental Protection Agency’s regulatory statistical threshold (410 most probable number of E. coli per 100 milliliters) in 91 percent of samples. These findings verified that Cedar and Crane Creeks are impaired by bacteria, and the HF183/BacR287 marker results support that human-origin fecal contamination is the dominant contributor to that impairment. The canine-associated MST marker BacCan was also prevalent in collected samples (detected in 112 of 118 samples); however, BacCan can also be detected in human waste, so it is not feasible to ascertain whether canine feces is a source of contamination in these watersheds. Human fecal contamination was nearly uniform among sites, but the Martin Williston Road ditch effluent site along Crane Creek had a significantly higher median HF183/BacR287 concentration than the other Crane Creek sites. Results indicate that the Martin Williston Road ditch is a potential source of human-origin fecal contamination to Crane Creek. There is likely additional human fecal contamination upstream from the study area.

Ohio↗
USGS2011

Monitoring habitat restoration projects: U.S. Fish and Wildlife Service Pacific Region Partners for Fish and Wildlife Program and Coastal Program Protocol

The U.S. Fish and Wildlife Service's (FWS) Pacific Region (Region 1) includes more than 158 million acres (almost 247,000 square miles) of land base in Idaho, Oregon, Washington, Hawai`i, the Commonwealth of the Northern Mariana Islands, American Samoa, Guam, the Republic of Palau, the Federated States of Micronesia, and the Republic of the Marshall Islands. Region 1 is ecologically diverse with landscapes that range from coral reefs, broadleaf tropical forests, and tropical savannahs in the Pacific Islands, to glacial streams and lakes, lush old-growth rainforests, inland fjords, and coastal shoreline in the Pacific Northwest, to the forested mountains, shrub-steppe desert, and native grasslands in the Inland Northwest. Similarly, the people of the different landscapes perceive, value, and manage their natural resources in ways unique to their respective regions and cultures. The Partners for Fish and Wildlife Program (Partners Program) and Coastal Program work with a variety of partners in Region 1 including individual landowners, watershed councils, land trusts, Soil and Water Conservation Districts, non-governmental organizations, Tribal governments, Native Hawaiian organizations, and local, State, and Federal agencies. The Partners Program is the FWS's vanguard for working with private landowners to voluntarily restore and conserve fish and wildlife habitat. Using non-regulatory incentives, the Partners Program engages willing partners to conserve and protect valuable fish and wildlife habitat on their property and in their communities. This is accomplished by providing the funding support and technical and planning tools needed to make on-the-ground conservation affordable, feasible, and effective. The primary goals of the Pacific Region Partners Program are to: Promote citizen and community-based stewardship efforts for fish and wildlife conservation Contribute to the recovery of at-risk species, Protect the environmental integrity of the National Wildlife Refuges, Contribute to the implementation of the State Comprehensive Wildlife Conservation Strategies, and Help achieve the objectives of the National Fish Habitat Partnerships and regionally based bird conservation plans (for example, North American Waterfowl Management Plan, U.S. Pacific Island Shorebird Conservation Plans, Intermountain West Regional Shorebird Plan, etc.). The Partners Program accomplishes these priorities by: Developing and maintaining strong partnerships, and delivering on-the-ground habitat restoration projects designed to reestablish habitat function and restore natural processes; Addressing key habitat limiting factors for declining species; Providing corridors for wildlife and decrease impediments to native fish and wildlife migration; and Enhancing native plant communities by reducing invasive species and improving native species composition. The Coastal Program is a voluntary fish and wildlife conservation program that focuses on watershed-scale, long-term collaborative resource planning and on-the-ground restoration projects in high-priority coastal areas. The Coastal Program conducts planning and restoration work on private, State, and Federal lands, and partnerships with other agencies-Native American Tribes, citizens, and organizations are emphasized. Coastal Program goals include restoring and protecting coastal habitat, providing technical and cost-sharing assistance where appropriate, supporting community-based restoration, collecting and developing information on the status of and threats to fish and wildlife, and using outreach to promote stewardship of coastal resources. The diversity of habitats and partners in Region 1 present many opportunities for conducting restoration projects. Faced with this abundance of opportunity, the Partners Program and Coastal Program must ensure that limited staffing and project dollars are allocated to benefit the highest priority resources and achieve the highest quality results for Federal trust species. In 2007, the Partners Program and Coastal Program developed a Strategic Plan to guide program operations and more efficiently conserve habitat by focusing partnership building and habitat improvement actions within 35 Partners Program Focus Areas and 9 Coastal Program Focus Areas (U.S. Fish and Wildlife Service, 2010). The Strategic Plan also contains four other goals: broaden and strengthen partnerships; improve information sharing and communications; enhance workforce; and increase accountability to ensure that program resources are used efficiently and effectively. This protocol will help achieve all goals of the Strategic Plan.

Techniques and Methods↗
USGS2001

Estimates of evapotranspiration from the Ruby Lake National Wildlife Refuge area, Ruby Valley, northeastern Nevada, May 1999–October 2000

The Ruby Lake National Wildlife Refuge in Ruby Valley, Nevada, contains the largest area of perennial wetlands in northeastern Nevada and provides habitat to a large number of migratory and nesting waterfowl. The long-term preservation of the refuge depends on the availability of sufficient water to maintain optimal habitat conditions. In the Ruby Valley water budget, evapotranspiration (ET) from the refuge is one of the largest components of natural outflow. To help determine the amount of inflow needed to maintain wetland habitat, estimates of ET for May 1999 through October 2000 were made at major habitats throughout the refuge. The Bowen-ratio method was used to estimate daily ET at four sites: over open water, in a moderate-to-dense cover of bulrush marsh, in a moderate cover of mixed phreatophytic shrubs, and in a desert-shrub upland. The eddy-correlation method was used to estimate daily ET for periods of 2 to 12 weeks at a meadow site and at four sites in a sparse-to-moderate cover of phreatophytic shrubs. Daily ET rates ranged from less than 0.010 inch per day at all of the sites to a maximum of 0.464 inch per day at the open-water site. Average daily ET rates estimated for open water and a bulrush marsh were about four to five times greater than in areas of mixed phreatophytic shrubs, where the depth to ground water is less than 5 feet. Based on the seasonal distribution of major habitats in the refuge and on winter and summer ET rates, an estimated total of about 89,000 acre-feet of water was consumed by ET during October 1999-September 2000 (2000 water year). Of this total, about 49,800 acre-feet was consumed by ET in areas of open water and bulrush marsh.

Nevada↗
USGS2001

Water quality and occurrence of methyl-tert butyl ether (MTBE) and other fuel related compounds in lakes and ground water at lakeside communities in Sussex and Morris Counties, New Jersey, 1998-1999

Densely populated communities surround many of the larger lakes in northwestern New Jersey. These communities derive most of their water supply from wells. The lakes can be navigated by gasoline-powered watercraft, can be in various stages of eutrophication, may contain pathogens associated with bathing and waterfowl, and are periodically subjected to chemical applications to control aquatic plant growth. Another feature that contributes to water-quality concerns in lakeside communities is the widespread use of septic tanks. Concentrations of methyl tert-butyl ether (MTBE), a gasoline oxygenate, in samples from Cranberry Lake and Lake Lackawanna ranged from 20 to 30 ug/L (micrograms per liter) and 5 to 14 ug/L during the summers of 1998 and 1999, respectively. These levels were persistent throughout the depth of the lakes when mixing conditions were present. MTBE concentrations in samples from the top 20 feet of Lake Hopatcong during summer 1999 were about 10 ug/L and about 2 to 3 ug/L in samples below 20 feet. The source of the MTBE in the lakes was determined to be gasoline-powered watercraft. Other constituents of gasoline--tertiary amyl methyl ether (TAME) and benzene, toluene, ethylbenzene, and xylenes (BTEX)--were detected in the lakes but at much lower concentrations than MTBE. Ambient ground-water quality at Cranberry Lake and Lake Lackawanna appears to be affected by the use of gasoline-powered watercraft. MTBE was detected in water samples from 13 of the 14 wells sampled at Cranberry Lake in fall 1998 and summer 1999. The wells were selected to monitor ambient ground-water quality and had no history of contamination. In ground-water samples collected during fall 1998, MTBE concentrations ranged from 0.12 to 19.8 ug/L, and the median concentration was 0.43 ug/L. In samples from summer 1999, MTBE concentrations ranged from 0.14 to 13.2 ug/L, and the median concentration was 0.38 ug/L. MTBE was detected in samples from four of the five wells at Lake Lackawanna in summer 1999;concentrations ranged from 0.05 to 0.19 ug/L. Lake/ground water interaction is a feasible explanation for the nearly ubiquitous presence of MTBE in ground water. The movement of water from lakes to wells is feasible because many static water levels and essentially all pumped water levels in the wells were below lake levels. Furthermore, diatom fragments were present in samples from the wells. Ambient ground water at Cranberry Lake also may be affected by septic-tank effluent, as indicated by the relation among concentrations of nitrate, boron, and chloroform. This result indicates potential vulnerability of the water supply to contamination by other chemicals and pathogens. Radon in ambient ground water is a concern throughout northern New Jersey. In particular, the median radon concentrations in ground-water samples collected from 14 wells at Cranberry Lake in 1998 and 1999 were 1,282 and 1,046 pCi/L, respectively. The median radon concentration in five ground-water samples collected at Lake Lackawanna in 1999 was 340 pCi/L. Although these values exceed regulatory levels, they are not high relative to radon concentrations measured in northwestern New Jersey. Eight wells in a neighborhood of Cranberry Lake with known MTBE contamination were sampled by the U.S. Geological Survey in summer 1998. MTBE was detected at concentrations greater than or equal to 40 ug/L in five of the wells. Concentrations of TAME, another gasoline oxygenate, were highly correlated with concentrations of MTBE; MTBE concentrations were about 10 times the TAME concentrations. In all samples, however, the concentrations of the BTEX compounds were less than 0.05 ug/L, and the sample from the most highly contaminated well, where the MTBE concentration was 900 ug/L, had no detectable BTEX.

New Jersey↗
USGS1980

Hydrologic analysis of the proposed Badger-Beaver Creeks artificial-recharge project: Morgan County, Colorado

A hydrologic analysis of the proposed Badger-Beaver Creeks artificial-recharge project in Morgan County, Colo., was made with the aid of three digital computer models: A canal-distribution model, a ground-water flow model, and a stream-aquifer model. Statistical summaries of probable diversions from the South Platte River based on a 27-year period of historical flows indicate that an average-annual diversion of 96,000 acre-feet and a median-annual diversion of 43,000 acre-feet would be available. Diversions would sustain water in ponds for waterfowl habitat for an average of about five months per year, with a miximum pond surface area of about 300 acres with the median diversions and a maximum pond surface area of about 1,250 acres at least one-half of the years with the historic diversions. If the annual diversion were 43,000 acre-feet, recharge to the two alluvial aquifers would raise water levels sufficiently to create flowing streams in the channels of Beaver and Badger Creeks while allowing an increase in current ground-water pumping. The only area of significant waterlogging would be along the proposed delivery canal on the west edge of Badger Creek valley. If the total water available were diverted, the aquifer system could not transmit the water fast enough to the irrigation areas to avoid considerable waterlogging in the recharge areas. The impact of the proposed project on the South Platte River basin would be minimal once the ground-water system attained steady-state conditions, but that may take decades with a uniform diversion of the 43,000 acre-feet annually.

Colorado↗
USGS1986

Water-quality variability in four reservoirs in Phillips and Valley Counties, Montana, May through August 1981

Four reservoirs in Phillips and Valley Counties were studied from May to August, 1981 (1) to describe the variation in water quality that occurs from late spring (May) to late summer (August) and during 24-hrs in late summer and (2) to describe possible causes for the variation. All the reservoirs had distinct thermal gradients but lacked true stratification as a result of circulation induced by wind. Such mixing helps prevent oxygen depletion in bottom waters during the summer. The smallest dissolved-oxygen concentrations occurred in the near-bottom water of the reservoirs and during the night. Nighttime dissolved-oxygen concentrations in reservoirs 19 and 24 were much less than in reservoirs 1 and 9. Similar trends occurred with pH. Most chemical constituents in the water generally became more concentrated from May to August because of continuous water losses from evapotranspiration. This was noted by increase in the concentration of major dissolved constituents and by increase in specific conductance. All the reservoirs contained similar types of planktonic organisms, but in different proportions. Most of the fecal bacteria existing in the reservoirs presumably originated from livestock and waterfowl waste. (USGS)

Montana↗
USGS1990

Reconnaissance investigation of water quality, bottom sediment, and biota associated with irrigation drainage in and near Stillwater Wildlife Management Area, Churchill County, Nevada, 1986-87

A reconnaissance was initiated in 1986 to determine whether the quality of irrigation-drainage water in and near the Stillwater Wildlife Management Area, Nevada, has caused or has potential to cause harmful effects on human health, fish, wildlife, or other beneficial uses of water. Samples of surface and groundwater, bottom sediment, and biota were collected from sites upstream and downstream from the Fallon agricultural area in the Carson Desert, and analyzed for potentially toxic trace elements. Other analysis included radioactive substances, major dissolved constituents, and nutrients in water, and pesticide residues in bottom sediment and biota. In areas affected by irrigation drainage, the following constituents were found to commonly exceed baseline concentrations or recommended criteria for protection of aquatic life or propagation of wildlife: In water, arsenic, boron, dissolved solids, molybdenum, sodium, and un-ionized ammonia; in bottom sediments, arsenic, lithium, mercury, molybdenum, and selenium; and in biota, arsenic, boron, chromium, copper, mercury, selenium, and zinc. In some wetlands, selenium and mercury appeared to be biomagnified, and arsenic bioaccumulated. Pesticides contamination in bottom sediments and biota was insignificant. Adverse biological effects observed during this reconnaissance included gradual vegetative changes and species loss, fish die-offs, waterfowl disease epidemics, and persistent and unexplained deaths of migratory birds. (USGS)

Water-Resources Investigations Report↗
USGS1995

Reconnaissance investigation of water quality, bottom sediment, and biota associated with irrigation drainage in the Columbia Basin Project, Washington, 1991-92

The reconnaissance investigation results indicated that irrigation drainage generally has not adversely affected biota in the Columbia Basin Project. Hazards to biota from large concentrations of certain trace elements in water and bottom sediment, and caused by high evaporation rates in irrigated arid lands, are reduced by imported, dilute Columbia River water. However, boron concentrations in aquatic plants might affect waterfowl feeding on these plants and arsenic concentrations in juvenile coots were similar to those in mallard ducklings who exhibited abnormalities after being fed an arsenic-supplemented diet. During irrigation season, concentrations of boron, nitrate, and dissolved solids in water were increased in the southern wasteways because of water reuse. During non-irrigation season, constituent concentrations were large when stream flows are sustained by return water from tile drains and ground water. However, concentrations of dissolved constituents typically did not exceed standards or criteria for humans, freshwater life, or beneficial uses of the water. In water, the herbicide 2,4-D was detected more than any other pesticide and in concentrations from 0.01 to 1.0 microgram per liter. In bottom sediment, organochlorine insecticides were detected in samples from 19 of 21 sites. In fish collected from some wasteways, chlordane, DDT, and dieldrin concentrations occasionally exceeded freshwater protection criteria.

Washington↗
USGS1995

Water quality in the Withers Swash Basin, with emphasis on enteric bacteria, Myrtle Beach, South Carolina, 1991-93

Water samples were collected in 1991-93 from Withers Swash and its two tributaries (the Mainstem and KOA Branches) in Myrtle Beach, S.C., and analyzed for physical properties, organic and inorganic constituents, and fecal coliform and streptococcus bacteria. Samples were collected during wet- and dry-weather conditions to assess the water quality of the streams before and after storm runoff. Water samples were analyzed for over 200 separate physical, chemical, and biological constituents. Concentrations of 11 constituents violated State criteria for shellfish harvesting waters, and State Human Health Criteria. The 11 constituents included concentrations of dissolved oxygen, arsenic, lead, cadmium, mercury, chlordane, dieldrin, 1,1,1-trichloroethane, 1,1-dichloroethylene, trichloroethylene, and fecal coliform bacteria. Water samples were examined for the presence of enteric bacteria (fecal coliform and fecal streptococcus) at 46 sites throughout the Withers Swash Basin and 5 sites on the beach and in the Atlantic Ocean. Water samples were collected just upstream from all confluences in order to determine sources of bacterial contamination. Temporally and spatially high concentrations of enteric bacteria were detected throughout the Withers Swash Basin; however, these sporadic bacteria concentrations made it difficult to determine a single source of the contamination. These enteric bacteria concentrations are probably derived from a number of sources in the basin including septic tanks, garbage containers, and the feces of waterfowl and domestic animals.

South Carolina↗
USGS1996

Detailed study of water quality, bottom sediment, and biota associated with irrigation drainage in the Klamath Basin, California and Oregon, 1990-92

The effect of irrigation drainage on the water quality and wildlife of the Klamath Basin in California and Oregon was evaluated during 1990-92 as part of the National Irrigation Water Quality Program of the U.S. Department of the Interior. The study focused on land serviced by the Bureau of Reclamation Klamath Project, which supplies irrigation water to agricultural land in the Klamath Basin and the Lost River Basin. The Tule Lake and Lower Klamath National Wildlife Refuges, managed by the U.S. Fish and Wildlife Service, are in the study area. These refuges provide critical resting and breeding habitat for waterfowl on the Pacific flyway and are dependent on irrigation drainwater from upstream agriculture for most of their water supply. Water-quality characteristics throughout the study area were typical of highly eutrophic systems during the summer months of 1991 and 1992. Dissolved-oxygen concentrations and pH tended to fluctuate each day in response to diurnal patterns of photosynthesis, and frequently exceeded criteria for protection of aquatic organisms. Nitrogen and phosphorus concentrations were generally at or above threshold levels characteristic of eutrophic lakes and streams. At most sites the bulk of dissolved nitrogen was organically bound. Elevated ammonia concentrations were common in the study area, especially downstream of drain inputs. High pH of water increased the toxicity of ammonia, and concentrations exceeded criteria at sites upstream and downstream of irrigated land. Concentrations of ammonia in samples from small drains on the Tule Lake refuge leaseland were higher than those measured in the larger, integrating drains at primary monitoring sites. The mean ammonia concentration in leaseland drains [1.21 milligrams per liter (mg/L)] was significantly higher than the mean concentration in canals delivering water to the leaseland fields (0.065 mg/L) and higher than concentrations reported to be lethal to Daphnia magna (median lethal concentration of 0.66 mg/L). Dissolved-oxygen concentrations also were lower, and Daphnia survivability measured during in situ bioassays was correspondingly lower in the leaseland drains than in water delivery canals. In static laboratory bioassays, water samples collected at the primary monitoring sites caused toxicity in up to 78 percent of Lemna minor tests, in up to 49 percent of Xenopus laevis tests, in 17 percent and 8 percent of Hyalella azteca and Pimephales promelas tests, respectively, and 0 percent in Daphnia magna tests. In situ exposure at the sites caused mortality in more than 83 percent of Pimephales tests and in more than 41 percent of Daphnia and Hyalella tests. Much of the observed toxicity appears to have been caused by low dissolved oxygen, high pH, and ammonia. Although water in the study area was toxic to a variety of organisms, no statistically significant differences in the degree of toxicity between sites were observed above or below irrigated agricultural land in any of the bioassays. Pesticides were frequently detected in water samples collected at the monitoring sites during the 1991 and 1992 irrigation seasons. Among the most frequently detected compounds were the herbicides simazine, metribuzin, EPTC, and metolachlor and the insecticide terbufos. All the insecticides detected were at concentrations substantially below acute toxicity values reported for aquatic organisms. The herbicide acrolein has been used extensively in the basin to manage aquatic plant growth in irrigation canals and drains. The concentration of acrolein was monitored in a canal near Tule Lake after an application in order to evaluate the potential for the pesticide to be transported to refuge waters. Although acrolein concentrations were toxic to fish in the channels adjacent to Tule Lake, very little of the canal water entered the refuge during the monitoring period. Organochlorine pesticide concentrations in 25 surficial sediment samples collected in 1990 were below baseline levels commonly found in soils and sediment. Seventeen sediment samples were analyzed for chlorophenoxy acid herbicides and two samples were analyzed for organophosphorus and carbamate insecticides in 1992. No pesticides were detected in any of these samples. Residues of the trace elements selenium, mercury, and arsenic in algae, invertebrates, fish, and avian eggs revealed no bioaccumulation problems. Concentrations of organochlorine compounds, especially of p,p' DDE, were associated with a mean 11-percent eggshell thinning in white-faced ibis. However, ibis populations appear to be increasing, and some eggs of ibis were relatively low in DDE concentration. DDE concentrations in eggs of western grebes were not as high as in the eggs of ibis. Concentrations and types of organochlorine compounds detected in grebe and ibis eggs were highly variable, indicating that the birds were exposed to these compounds outside the basin. Fish and invertebrates inhabiting drainwater were representative of pollution-tolerant species assemblages. The aquatic communities retained little of their historic ecological structure. Extensive hydrologic modifications and hypereutrophic conditions in Klamath Basin waterways have degraded the quality of aquatic habitat and altered aquatic communities.

California, Oregon↗
USGS1997

Field screening of water, soil, bottom sediment, and biota associated with irrigation drainage in the Dolores Project and the Mancos River Basin, southwestern Colorado, 1994

A reconnaissance investigation for the National Irrigation Water Quality Program in 1990 indicated elevated selenium concentrations in some water and biota samples collected in the Dolores Project in southwestern Colorado. High selenium concentrations also were indicated in bird samples collected in the Mancos Project in 1989. In 1994, field screenings were done in parts of the Dolores Project and Mancos River Basin to collect additional selenium data associated with irrigation inthose areas. Selenium is mobilized from soils in newly irrigated areas of the Dolores Project called the Dove Creek area, which includes newly (since 1987) irrigated land north of Cortez and south of Dove Creek.Selenium was detected in 18 of 20stream samples, and the maximum concentration was 12micrograms per liter. The Dove Creek area is unique compared to other study areas of the National Irrigation Water Quality Program becauseselenium concentrations probably are indicative of initial leaching conditions in a newly irrigated area.Selenium concentrations in nine shallow soil samples from the Dove Creek area ranged from 0.13 to 0.20 micrograms per gram. Selenium concentrations in bottom sediment from six ponds were less than the level of concern for fish and wildlife of 4 micrograms per gram. Many biota samples collected in the Dove Creek area had elevated selenium concentrations when compared to various guidelines and effect levels,although selenium concentrations in water, soil, and bottom sediment were relatively low. Selenium concentrations in 12 of 14 aquatic-invertebratesamples from ponds exceeded 3 micrograms per gram dry weight, a dietary guideline for protection of fish and wildlife. The mean seleniumconcentration of 10.3 micrograms per gram dry weight in aquatic bird eggs exceeded the guideline for reduced hatchability of 8 micrograms per gramdry weight. Two ponds in the Dove Creek area had a high selenium hazard rating based on a new protocol for assessing selenium hazard in theenvironment; however, waterfowl were reproducing at the two ponds. Three tributary streams of Mc Elmo Creek that drain irrigated areas of the Montezuma Valley south of the creek were sampled in 1994. Mud Creek probably is the largest source of selenium to Mc Elmo Creek. Most biota samples from Mud Creek had elevated selenium concentrations when compared to guidelines for dietary items and freshwater fish. Selenium concentrations in water samples collected in the Mancos River Basin upstream from Navajo Wash, which includes the Mancos Project, ranged from less than 1 to 10 micrograms per liter. Mud Creek contributed about 74 percent of the selenium load to the upper Mancos River in March 1994.Selenium concentrations were much higher in Navajo Wash; a sample collected in March had 97 micrograms per liter of selenium. Bottom-sediment samples from two ponds in the Mancos Projectexceeded the concentration of concern of 4 micrograms per gram. The highest selenium concentrations in biota samples from streams in the Mancos River Basin were for samples from Navajo Wash. Mostconcentrations in biota in the upper Mancos River Basin were less than guidelines. Mean selenium concentrations in eggs from aquatic birds collected at three ponds in the Mancos Project slightly exceed the guideline associated with reduced hatchability.Five bird livers had a mean selenium concentration of 32.6 micrograms per gram dry weight, whichslightly exceeded the mean concentration of 30 micrograms per gram dry weight that is associated with reproductive impairment. Two of the pondshad a high selenium hazard rating; however, mallard reproduction was observed in 1994 at one of the ponds that had a high selenium-hazard rating.

Colorado↗
USGS1967

Causes of fluctuations in the rate of discharge of Clear Lake Springs, Millard County, Utah

The Clear Lake Springs in southeastern Millard County are the source of water for the maintenance of the Clear Lakes Migratory Waterfowl Refuge. Seasonal declines in the rate of discharge were noted during 1959-60. Fluctuations in the flow of Clear Lake Springs are caused both by natural variations in the quantity of recharge and by variations in the quantity of water pumped from an increasing number of irrigation wells in the southern four districts of adjacent Pavant Valley. The springs are the principal discharge point for an aquifer in a complex of highly permeable basalt flows. Water enters the basalt aquifer as direct recharge from precipitation, as interformational leakage from a contiguous artesian aquifer in lake and alluvial sediments, and as infiltration of infrequent flood runoff and of unconsumed irrigation water in the lowlands of Pavant Valley. A hydrograph of the flow of the springs indicates that precipitation on the basalt outcrop recharges the aquifer; this conclusion is strengthened by fluctuations in the chemical quality of the spring water. The effects due to precipitation, however, are partly masked by the larger effects due to the pumping of ground water for irrigation in southern Pavant Valley. Withdrawal of ground water from wells in the southern four districts causes seasonal reductions in the flow of the springs by reducing the hydraulic gradient between the wells and the springs. Statistical analysis of three parameters - the (1) October-April precipitation, (2) annual pumpage, and (3) annual lowest rate of spring discharge - shows that a departure of 1 inch from the normal October-April precipitation at Fillmore is accompanied by a change of 0.41 cubic feet per second in the low flow of Clear Lake Springs. Similarly, a departure of 1,000 acre-feet from the 1961-64 average annual pumpage causes the low flow of the springs to change by 0.23 cubic feet per second. The average annual volume of discharge from Clear Lake Springs during 1960-64 was 14,900 acre-feet. The equation derived from the statistical analysis shows that of the average annual discharge, 3,000 acre-feet of water was derived from precipitation on the basalt, 9,000 acre-feet, from underflow from Pavant Valley, and 2,900 acre-feet, from undetermined sources.

Utah↗
USGS2015

Serologic evidence of influenza A (H14) virus introduction into North America

Although a diverse population of influenza A viruses (IAVs) is maintained among ducks, geese, shorebirds, and gulls, not all of the 16 avian hemagglutinin (HA) subtypes are equally represented (1). The 14th HA subtype, commonly known as the H14 subtype, was historically limited to isolates from the former Soviet Union in the 1980s (2) and was not subsequently detected until 2010, when isolated in Wisconsin, USA from long-tailed ducks and a white-winged scoter (3–5). In the United States, the H14 subtype has since been isolated in California (6), Mississippi, and Texas (7); and has been reported in waterfowl in Guatemala (7). In this study, we examined whether there was serologic evidence of H14 spread among ducks in North America before (2006–2010) and after (2011–2014) the initial detection of the H14 subtype virus on this continent.

Emerging Infectious Diseases↗
USGS2012

Spatiotemporal associations between Pacific herring spawn and surf scoter spring migration: evaluating a "silver wave" hypothesis

Surf scoters Melanitta perspicillata are sea ducks that aggregate at spawning events of Pacific herring Clupea pallasi and forage on the eggs, which are deposited in abundance during spring at discrete sites. We evaluated whether migrating scoters followed a ‘silver wave’ of resource availability, analogous to the ‘green wave’ of high-quality foraging conditions that herbivorous waterfowl follow during spring migration. We confirmed that herring spawning activity began later in the year at higher latitudes, creating a northward-progressing wave of short-term localized food availability. Using satellite telemetry and aerial surveys, we documented the chronology of scoter spring migration and the use of stopover locations in relation to herring spawn timing and locations. We found that the migration chronology paralleled the northward progression of herring spawning events. Although there was considerable variability in the timing of both scoter migration and the initiation of herring spawning, the processes were related beyond a coincidental northward progression. During migration, 60% of the tracked scoters visited at least 1 spawn site, and those that used spawn sites were located on spawn sites for approximately one-third of their migration locations. Surf scoters showed close spatiotemporal associations with herring spawning events, confirming that the presence of herring spawn was a factor determining habitat use for many individuals. Surf scoters showed close spatiotemporal associations with herring spawning events, confirming that the presence of herring spawn was a factor determining habitat use for many individuals, a conclusion that is consistent with previous studies which used physiologically based metrics to evaluate the importance of herring spawn.

Marine Ecology Progress Series↗