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At least 1,153 records · Page 64Linked to original sources

USGS2017

Nest predation risk explains variation in avian clutch size

Questions about the ecological drivers of, and mechanistic constraints on, productivity have driven research on life-history evolution for decades. Resource availability and offspring mortality are considered among the 2 most important influences on the number of offspring per reproductive attempt. We used a factorial experimental design to manipulate food abundance and perceived offspring predation risk in a wild avian population (red-faced warblers; Cardellina rubrifrons ) to identify the mechanistic cause of variation in avian clutch size. Additionally, we tested whether female quality helped explain the extant variation in clutch size. We found no support for the Food Limitation or Female Quality Hypotheses, but we did find support for both predictions of the Nest Predation Risk Hypothesis. Females that experienced an experimentally heightened perception of offspring predation risk responded by laying a smaller clutch than females in the control group. Additionally, predation rates at artificial nests were highest where red-faced warbler clutch size was smallest (at high elevations). Life-history theory predicts that an individual should invest less in reproduction when high nest predation risk reduces the likely benefit from that nesting attempt and, indeed, we found that birds exhibit phenotypic plasticity in clutch size by laying fewer eggs in response to increasing nest predation risk.

Behavioral Ecology↗

USGS2015

Mountain pine beetle host selection between lodgepole and ponderosa pines in the southern Rocky Mountains

Recent evidence of range expansion and host transition by mountain pine beetle ( Dendroctonus ponderosae Hopkins; MPB) has suggested that MPB may not primarily breed in their natal host, but will switch hosts to an alternate tree species. As MPB populations expanded in lodgepole pine forests in the southern Rocky Mountains, we investigated the potential for movement into adjacent ponderosa pine forests. We conducted field and laboratory experiments to evaluate four aspects of MPB population dynamics and host selection behavior in the two hosts: emergence timing, sex ratios, host choice, and reproductive success. We found that peak MPB emergence from both hosts occurred simultaneously between late July and early August, and the sex ratio of emerging beetles did not differ between hosts. In two direct tests of MPB host selection, we identified a strong preference by MPB for ponderosa versus lodgepole pine. At field sites, we captured naturally emerging beetles from both natal hosts in choice arenas containing logs of both species. In the laboratory, we offered sections of bark and phloem from both species to individual insects in bioassays. In both tests, insects infested ponderosa over lodgepole pine at a ratio of almost 2:1, regardless of natal host species. Reproductive success (offspring/female) was similar in colonized logs of both hosts. Overall, our findings suggest that MPB may exhibit equally high rates of infestation and fecundity in an alternate host under favorable conditions.

Rocky Mountains↗

USGS2025

Effects of dietary selenium on the amphipod Hyalella azteca and the midge Chironomus dilutus

Chronic selenium (Se) water quality criteria are based primarily on dietary organoselenium exposure and subsequent reproductive effects in fish. Available chronic Se toxicity data suggests that invertebrates are less sensitive than fish, but chronic invertebrate studies are limited. We evaluated yeast-based diets for chronic toxicity studies with Hyalella azteca and Chironomus dilutus. Growth and survival were similar among C. dilutus fed a yeast-only diet, a mixture of yeast and fish flake food, and a mixture of yeast and diatoms. Survival and growth of H. azteca were best in the yeast + diatom diet, so this diet was used for subsequent tests. In rangefinder tests, H. azteca 28-day survival, growth, and biomass, and C. dilutus 11-day survival were all significantly reduced at a dietary Se concentration of 49 µg/g dry weight, whereas C. dilutus growth and biomass were only affected at 200 µg/g dry weight Se. H. azteca had similar sensitivity to dietary Se in a 28–42-day chronic test—survival, growth, and biomass were significantly reduced at 44.5 µg/g dry weight Se. Dietary selenium reduced H. azteca reproduction by 75%–100% relative to Controls, but differences were not significant. Tissue Se EC10s were lower for H. azteca (9.0–23 µg/g dry weight) than for C. dilutus (11–56 µg/g dry weight). However, model evaluations suggest that the C. dilutus 11-day survival and H. azteca 42-day EC10s were less reliable than other endpoints. When tissue EC10s were converted to equivalent Se concentrations in fish tissue with a food web model, H. azteca (18 µg/g dry weight) and C . dilutus (68 µg/g dry weight) ranked 6th and 12th of 13 freshwater genera, respectively. Overall, these results suggest that the current U.S. Environmental Protection Agency tissue-based Se water quality criteria would be protective for fish and invertebrates and could be used for management of fishless waters.

Environmental Toxicology and Chemistry↗

USGS2021

Diel patterns of pheromone release by male sea lamprey

Costs to producing sexual signals can create selective pressures on males to invest signaling effort in particular contexts. When the benefits of signaling vary consistently across time, males can optimize signal investment to specific temporal contexts using biological rhythms. Sea lamprey, Petromyzon marinus , have a semelparous life history, are primarily nocturnal, and rely on pheromone communication for reproduction; however, whether male investment in pheromone transport and release matches increases in spawning activity remains unknown. By measuring (1) 3keto-petromyzonol sulfate (3kPZS, a main pheromone component) and its biosynthetic precursor PZS in holding water and tissue samples at six points over the course of 24 hours and (2) 3kPZS release over the course of several days, we demonstrate that 3kPZS release exhibits a consistent diel pattern across several days with elevated pheromone release just prior to sunset and at night. Trends in hepatic concentrations and circulatory transport of PZS and 3kPZS were relatively consistent with patterns of 3kPZS release and suggest the possibility of direct upregulation in pheromone transport and release rather than observed release patterns being solely a byproduct of increased behavioral activity. Our results suggest males evolved a signaling strategy that synchronizes elevated pheromone release with nocturnal increases in sea lamprey behavior. This may be imperative to ensure that male signaling effort is not wasted in a species having a single, reproductive event.

Integrative and Comparative Biology↗

USGS2023

The smaller, the better? First evaluation of growth and mortality in crayfish internally tagged with p-Chips

Small-bodied aquatic animals present a challenge to researchers seeking to uniquely mark individuals for scientific study. Microtransponder tags, such as p-Chips, represent the smallest electronic animal tags available to meet this need. The use of p-Chips to tag freshwater crayfishes, however, has not been explored. The goal of this study, therefore, was to determine the effects of p-Chip tagging on growth and survival of crayfishes in a controlled laboratory environment. We also investigated potential influences from variables such as sex, reproductive form, number of molt events, and crayfish size on mortality. We internally tagged individuals of the woodland crayfish Faxonius hylas (Faxon, 1890) (12.2–26.6 mm carapace length; CL) with either one p-Chip (single-tag) or one p-Chip and one visual implant elastomer tag (double-tagged) and observed the effects over a period of 90 days. Survival probability over time was not statistically different ( P > 0.05) among tagging groups, sex, and reproductive form. Survival rates were similar across all tagging groups, with 75% in the control group, 77% in the double-tagged group, and 78% in the single-tag group. A strong correlation, however, was observed between survival and the number of molt events. Additionally, there was a negative correlation between survival and crayfish size (CL), indicating a higher risk of mortality for larger individuals. There were no statistically significant differences in growth in CL ( P = 0.30) or mass ( P = 0.19) among the tagging groups. We conclude that p-Chips are a viable tagging option for the study of crayfishes given their size, readability, and retention through molting cycles. We recommend that future studies repeat this experiment using smaller individuals to determine the minimum crayfish size compatible with p-Chip tagging. It is also important to test p-Chips with other crayfish species and compare the growth and mortality of crayfish tagged with p-Chips in natural habitats.

Journal of Crustacean Biology↗

USGS2021

Utah prairie dog population dynamics on the Awapa Plateau: Precipitation, elevation, and plague

Utah prairie dogs (UPDs, Cynomys parvidens ) are colonial, herbivorous rodents listed under the Endangered Species Act as threatened. Little is known about UPD population dynamics at higher elevations in the species’ range. From 2013 through 2016, we studied UPDs on five colonies at 2,645 to 2,873 m elevation on the Awapa Plateau, Utah, USA. Primary production increases with precipitation and precipitation increases with elevation on the plateau. We hypothesized that UPD body condition, reproduction, survival, and population growth all would vary directly with precipitation and elevation. Each year, we live-trapped UPDs from late-Jun through Aug, weighing each UPD, aging it as adult or pup, measuring its right hind foot, marking it for unique identification, and releasing it at point of capture. Fleas from live-trapped UPDs and opportunistically collected rodent carcasses, and rodent carcasses themselves, were tested for the agent of sylvatic plague ( Yersinia pestis ), a lethal invasive pathogen. Adult UPD body condition (mass:foot) increased with elevation. In addition, UPD reproduction (pups:adults) and population growth (λ) increased with precipitation. Annual survival declined from 0.49 in 2013–2014 to 0.24 in 2015–2016. We captured 421 UPDs in 2013 but only 149 in 2016. Sylvatic plague may have contributed to population declines. Notwithstanding, plague detection (yes/no by colony and year) had no statistical effect on population growth or annual survival, raising suspicion about the predictive value of binary plague detection variables. Generally speaking, efforts to conserve UPDs may benefit from the restoration and preservation of large colonies at mesic sites.

Utah↗

USGS2025

Muskellunge spawning habitat characteristics and availability in Green Bay, Lake Michigan

Objective Habitat degradation has been associated with the loss of many self-sustaining Muskellunge Esox masquinongy populations, including those in Green Bay, where stocking has provided an exceptional trophy fishery but restoration goals include establishing self-sustaining populations and there is little evidence of natural recruitment. Our objectives were to determine whether (1) Muskellunge spawning locations and occurrence of successful hatching were related to a suite of habitat characteristics, (2) proportions of Muskellunge spawning in or outside of tributaries to lower Green Bay were different, and (3) Muskellunge showed spawning site fidelity. Methods From 2017 to 2019, adult Muskellunge ( N = 60) were surgically implanted with radio and acoustic transmitters to identify spawning locations, where we measured a suite of habitat variables and attempted to collect eggs and larvae. Side-scan sonar was used to quantify the amount of habitat available to Muskellunge for egg deposition in the Fox and Menominee rivers, which are tributaries to Green Bay. Results Muskellunge eggs were collected at 58 locations, but only two larvae were collected from a single location. Bottom slope, depth, distance to shore, gravel substrate, organic matter, and dissolved oxygen best predicted the presence of Muskellunge eggs. We determined that little habitat associated with Muskellunge egg deposition was available in the Fox and Menominee rivers. However, approximately half of tagged Muskellunge appeared to spawn outside of tributaries. Muskellunge in Green Bay displayed moderate spawning site fidelity. Conclusions Our results suggest that successful hatching occurs at very low levels and the lack of suitable Muskellunge spawning habitat in Green Bay tributaries may be limiting natural reproduction. Changes in spatial allocation of stocked fish and enhancement of known spawning locations may increase egg deposition and subsequent natural reproduction.

Michigan, Wisconsin↗

USGS2018

Energetic fitness: Field metabolic rates assessed via 3D accelerometry complement conventional fitness metrics

Evaluating the fitness of organisms is an essential step towards understanding their responses to environmental change. Connections between energy expenditure and fitness have been postulated for nearly a century. However, testing this premise among wild animals is constrained by difficulties in measuring energy expenditure while simultaneously monitoring conventional fitness metrics such as survival and reproductive output. We addressed this issue by exploring the functional links between field metabolic rate (FMR), body condition, sex, age and reproductive performance in a wild population. We deployed 3D accelerometers on 115 Adélie penguins Pygoscelis adeliae during four breeding seasons at one of the largest colonies of this species, Cape Crozier, on Ross Island, Antarctica. The demography of this population has been studied for the past 18 years. From accelerometry recordings, collected for birds of known age and breeding history, we determined the vector of the dynamic body acceleration (VeDBA) and used it as a proxy for FMR. This allowed us to demonstrate relationships among FMR, a breeding quality index (BQI) and body condition. Notably, we found a significant quadratic relationship between mean VeDBA during foraging and BQI for experienced breeders, and individuals in better body condition showed lower rates of energy expenditure. We conclude that using FMR as a fitness component complementary to more conventional fitness metrics will yield greater understanding of evolutionary and conservation physiology.

Functional Ecology↗

USGS2021

Thermal constraints on energy balance, behaviour and spatial distribution of grizzly bears

1. Heat dissipation limit theory posits that energy available for growth and reproduction in endotherms is limited by their ability to dissipate heat. In mammals, endogenous heat production increases markedly during gestation and lactation, and thus female mammals may be subject to greater thermal constraints on energy expenditure than males. Such constraints likely have important implications for behaviour and population performance in a warming climate. 2. We used a mechanistic simulation model based on the first principles of heat and mass transfer to study thermal constraints on activity (both timing and intensity) of captive female grizzly bears Ursus arctos in current and future climate scenarios. We then quantified the relative importance of regulatory behaviours for maintaining heat balance using GPS telemetry locations of lactating versus non-lactating female bears from Yellowstone National Park, and assessed the degree to which costs of thermoregulation constrained the distribution of sampled bears in space and time. 3. Lactating female bears benefitted considerably more from behavioural cooling mechanisms (e.g. partial submersion in cool water or bedding on cool substrate) than non-lactating females in our simulations; the availability of water for thermoregulation increased the number of hours during which lactating females could be active by up to 60% under current climatic conditions and by up to 43% in the future climate scenario. Moreover, even in the future climate scenario, lactating bears were able to achieve heat balance 24 hr/day by thermoregulating behaviourally when water was available to facilitate cooling. 4. The most important predictor of female grizzly bear distribution in Yellowstone, regardless of reproductive status, was elevation. However, variables associated with the thermal environment were relatively more important for predicting the distribution of lactating than non-lactating female bears. 5. Our results suggest that the costs of heat dissipation, which are modulated by climate, may impose constraints on the behaviour and energetics of large endotherms like grizzly bears, and that access to water for cooling will likely be an increasingly important driver of grizzly bear distribution in Yellowstone as the climate continues to warm.

Wyoming↗

USGS2023

Why hibernate? Tests of four hypotheses to explain intraspecific variation in hibernation phenology

Hibernation is a remarkable behaviour deployed by a diverse array of endotherms within many clades that greatly reduces metabolic need, but also has somatic costs. Hibernation in modern endotherms is often assumed to be an adaptation allowing animals to avoid extreme thermal conditions or food shortages in seasonal environments. However, many animals hibernate when foraging conditions are energetically profitable, suggesting other causal factors influence hibernation behaviour. Understanding the selection pressures responsible for intraspecific variation in the timing and duration of hibernation can help elucidate the relative evolutionary influences of the ultimate ecological causes of hibernation. We tested four previously proposed mechanistic hypotheses to explain intraspecific variation in hibernation phenology in the federally threatened northern Idaho ground squirrel ( Urocitellus brunneus ): (1) thermal tolerance, (2) food limitation, (3) predation avoidance and (4) sexual selection. The predation avoidance and sexual selection hypotheses received the most support, although we also found some support for the thermal tolerance and food limitation hypotheses. Heavy squirrels increased hibernation duration regardless of environmental conditions, as predicted solely by the predation avoidance hypothesis. Reproductive males emerged from hibernation earlier in spring than other sex–age classes, a pattern predicted by the sexual selection hypothesis. Temperature and food availability explained a much smaller amount of the variation in hibernation behaviour, only partially supporting predictions of the thermal tolerance and food limitation hypotheses. Our results indicate that animals navigate life-history trade-offs between energetic allocation to survival and reproduction via state-dependent optimization of hibernation phenology. Consequently, any future environmental changes that influence body condition will have implications for population ecology and life-history evolution of hibernating animals due to stark differences in daily survival probability between hibernation and the active season.

Functional Ecology↗

USGS2020

Sources of variation in maternal allocation in a long-lived mammal

1. Life history theory predicts allocation of energy to reproduction varies with maternal age, but additional maternal features may be important to the allocation of energy to reproduction. We aimed to characterize age‐specific variation in maternal allocation and assess the relationship between maternal allocation and other static and dynamic maternal features. Mass measurements of 531 mothers and pups were used with Bayesian hierarchical models to explain the relationship between diverse maternal attributes and both the proportion of mass allocated by Weddell seal mothers, and the efficiency of mass transfer from mother to pup during lactation as well as the weaning mass of pups. Our results demonstrated that maternal mass was strongly and positively associated with the relative reserves allocated by a mother and a pup's weaning mass but that the efficiency of mass transfer declines with maternal parturition mass. Birthdate was positively associated with proportion mass allocation and pup weaning mass, but mass transfer efficiency was predicted to be highest at the mean birthdate. The relative allocation of maternal reserves declined with maternal age but the efficiency of mass transfer to pups increases, suggestive of selective disappearance of poor‐quality mothers. These findings highlight the importance of considering multiple maternal features when assessing variation in maternal allocation.

Journal of Animal Ecology↗

USGS2021

Informed breeding dispersal following stochastic changes to patch quality in a pond-breeding amphibian

The unidirectional movement of animals between breeding patches (i.e. breeding dispersal) has profound implications for the ecological and evolutionary dynamics of spatially structured populations. In spatiotemporally variable environments, individuals are expected to adjust their dispersal decisions according to information gathered on the environmental and/or social cues that reflect the fitness prospects in a given breeding patch (i.e. informed dispersal). A paucity of empirical work limited our understanding of the ability of animals to depart from low-quality breeding patches and settle in high-quality breeding patches. We examined the capacity of individuals to respond to stochastic changes in habitat quality via informed breeding dispersal in a pond-breeding amphibian. We conducted a 5-year (2015–2019) capture–recapture study of boreal toads Anaxyrus boreas boreas ( n = 1,100) that breed in beaver ponds in western Wyoming, USA. During early spring of 2017, an extreme flooding event destroyed several beaver dams and resulted in the loss of breeding habitat. We used multi-state models to investigate how temporal changes in pond characteristics influenced breeding dispersal, and determine whether movement decisions were in accordance with prospects for reproductive fitness. Boreal toads more often departed from low-quality breeding ponds (without successful metamorphosis) and settled in high-quality breeding ponds (with successful metamorphosis). Movement decisions were context-dependent and associated with pond characteristics altered by beaver dam destruction. Individuals were more likely to depart from shallow ponds with high vegetation cover and settle in deep ponds with low vegetation cover. The probability of metamorphosis was related to the same environmental cues, suggesting that boreal toads assess the fitness prospects of a breeding patch and adjust movement decisions accordingly (i.e. informed breeding dispersal). We demonstrated that stochastic variability in environmental conditions and habitat quality can underpin dispersal behaviour in amphibians. Our study highlighted the mechanistic linkages between habitat change, movement behaviour and prospects for reproductive performance, which is critical for understanding how wild animals respond to rapid environmental change.

Wyoming↗

USGS2021

Genomic signatures of thermal adaptation are associated with clinal shifts of life history in a broadly distributed frog

Temperature is a critical driver of ectotherm life-history strategies, whereby a warmer environment is associated with increased growth, reduced longevity and accelerated senescence. Increasing evidence indicates that thermal adaptation may underlie such life-history shifts in wild populations. Single nucleotide polymorphisms (SNPs) and copy number variants (CNVs) can help uncover the molecular mechanisms of temperature-driven variation in growth, longevity and senescence. However, our understanding of these mechanisms is still limited, which reduces our ability to predict the response of non-model ectotherms to global temperature change. In this study, we examined the potential role of thermal adaptation in clinal shifts of life-history traits (i.e. life span, senescence rate and recruitment) in the Columbia spotted frog Rana luteiventris along a broad temperature gradient in the western United States. We took advantage of extensive capture–recapture datasets of 20,033 marked individuals from eight populations surveyed annually for 14–18 years to examine how mean annual temperature and precipitation influenced demographic parameters (i.e. adult survival, life span, senescence rate, recruitment and population growth). After showing that temperature was the main climatic predictor influencing demography, we used RAD-seq data (50,829 SNPs and 6,599 putative CNVs) generated for 352 individuals from 31 breeding sites to identify the genomic signatures of thermal adaptation. Our results showed that temperature was negatively associated with annual adult survival and reproductive life span and positively associated with senescence rate. By contrast, recruitment increased with temperature, promoting the long-term viability of most populations. These temperature-dependent demographic changes were associated with strong genomic signatures of thermal adaptation. We identified 148 SNP candidates associated with temperature including three SNPs located within protein-coding genes regulating resistance to cold and hypoxia, immunity and reproduction in ranids. We also identified 39 CNV candidates (including within 38 transposable elements) for which normalized read depth was associated with temperature. Our study indicates that both SNPs and structural variants are associated with temperature and could eventually be found to play a functional role in clinal shifts in senescence rate and life-history strategies in R. luteiventris . These results highlight the potential role of different sources of molecular variation in the response of ectotherms to environmental temperature variation in the context of global warming.

Journal of Animal Ecology↗

USGS2021

Behavioral state-dependent habitat selection and implications for animal translocations

Post-release monitoring of translocated animals is often used to inform future translocation protocols. Quantifying habitat selection of translocated individuals may help identify features that characterize good settlement habitat and thus inform the choice of future release sites. However, translocated animals often undergo post-release behavioural modification, and their habitat selection may vary depending on the underlying behavioural state. To investigate this, we analysed behavioural state-dependent habitat selection in female greater sage-grouse Centrocercus urophasianus translocated from Wyoming to North Dakota, USA, using Hidden Markov Models combined with Integrated Step Selection Analysis. We segmented individual trajectories into behavioural phases corresponding to an exploratory state, characterized by broad and directed movements, and a restricted state, characterized by short and tortuous movements. Then, we quantified habitat selection in each state while accounting for seasonality and individual reproductive status. While in the exploratory state, sage-grouse exhibited natal habitat preference induction by selecting for high sagebrush cover, which is typical of their natal area in Wyoming but not of the release area in North Dakota. In the restricted state, sage-grouse selected for gentle topography and also adjusted their habitat selection to constraints imposed by seasonality and reproductive needs by selecting for high herbaceous cover during brood rearing. Synthesis and applications . Habitat selection of translocated sage-grouse differed between the post-release exploration and the settlement phase. Features selected after settling, not during exploration, are likely indicative of suitable settlement habitat. Our results suggest that areas characterized by gentle topography and high herbaceous cover are well-suited as release sites for sage-grouse translocated during the summer, especially brood-rearing females, and that sagebrush cover may not be a critical factor in determining the appropriateness of release sites for sage-grouse in North Dakota. Our findings highlight the need to consider behaviour when using habitat selection estimates to inform the choice of future release sites.

North Dakota, Wyoming↗

USGS2019

Phenological mismatch between season advancement and migration timing alters Arctic plant traits

1. Climate change is creating phenological mismatches between herbivores and their plant resources throughout the Arctic. While advancing growing seasons and changing arrival times of migratory herbivores has been shown to have consequences for herbivores and forage quality, developing mismatches are also likely to influence other traits of plants, such as above- and belowground biomass and the type of reproduction, that are often not investigated. 2. In coastal western Alaska, we conducted a three-year factorial experiment that simulated scenarios of phenological mismatch by manipulating the start of the growing season (ca. 3-weeks early and ambient) and grazing times (3-weeks early, typical, 3-weeks late, or no-grazing) of Pacific black brant (Branta bernicla nigricans), to examine how the timing of these events influence a primary goose forage species, Carex subspathacea. 3. After three years, an advanced growing season compared to a typical growing season increased stem heights, standing dead biomass, and the number of inflorescences. Early season grazing compared to typical season grazing reduced above- and belowground biomass, stem height, and the number of tillers; while late season grazing increased the number of inflorescences and standing dead biomass by year 3. Therefore, an advanced growing season and late grazing had comparable directional effects on most plant traits, but a 3-week delay in grazing had an impact on vegetation traits 3 to 5 times greater than a similar shift in advancement of spring conditions. In addition, changes in response to treatments for some variables, such as the number of inflorescences, were not measurable until the second year of the experiment, while other variables, such as root productivity and number of tillers, changed the direction of their responses to treatments over time. 4. Synthesis: Factors influencing the timing of migration have a larger influence on an important forage species than earlier springs in the breeding and rearing habitats of Pacific black brant. The phenological mismatch prediction for this site of earlier springs and later goose arrival will likely increase above- and belowground biomass and sexual reproduction of C. subspathacea. Implications for mismatch may be difficult to predict because some variables required successive years of mismatch to respond.

Journal of Ecology↗

USGS2014

A likelihood-based approach for assessment of extra-pair paternity and conspecific brood parasitism in natural populations

Genotypes are frequently used to assess alternative reproductive strategies such as extra-pair paternity and conspecific brood parasitism in wild populations. However, such analyses are vulnerable to genotyping error or molecular artifacts that can bias results. For example, when using multilocus microsatellite data, a mismatch at a single locus, suggesting the offspring was not directly related to its putative parents, can occur quite commonly even when the offspring is truly related. Some recent studies have advocated an ad-hoc rule that offspring must differ at more than one locus in order to conclude that they are not directly related. While this reduces the frequency with which true offspring are identified as not directly related young, it also introduces bias in the opposite direction, wherein not directly related young are categorized as true offspring. More importantly, it ignores the additional information on allele frequencies which would reduce overall bias. In this study, we present a novel technique for assessing extra-pair paternity and conspecific brood parasitism using a likelihood-based approach in a new version of program cervus. We test the suitability of the technique by applying it to a simulated data set and then present an example to demonstrate its influence on the estimation of alternative reproductive strategies.

Molecular Ecology Resources↗

USGS2012

Representing the acquisition and use of energy by individuals in agent-based models of animal populations

1. Agent-based models (ABMs) are widely used to predict how populations respond to changing environments. As the availability of food varies in space and time, individuals should have their own energy budgets, but there is no consensus as to how these should be modelled. Here, we use knowledge of physiological ecology to identify major issues confronting the modeller and to make recommendations about how energy budgets for use in ABMs should be constructed. 2. Our proposal is that modelled animals forage as necessary to supply their energy needs for maintenance, growth and reproduction. If there is sufficient energy intake, an animal allocates the energy obtained in the order: maintenance, growth, reproduction, energy storage, until its energy stores reach an optimal level. If there is a shortfall, the priorities for maintenance and growth/reproduction remain the same until reserves fall to a critical threshold below which all are allocated to maintenance. Rates of ingestion and allocation depend on body mass and temperature. We make suggestions for how each of these processes should be modelled mathematically. 3. Mortality rates vary with body mass and temperature according to known relationships, and these can be used to obtain estimates of background mortality rate. 4. If parameter values cannot be obtained directly, then values may provisionally be obtained by parameter borrowing, pattern-oriented modelling, artificial evolution or from allometric equations. 5. The development of ABMs incorporating individual energy budgets is essential for realistic modelling of populations affected by food availability. Such ABMs are already being used to guide conservation planning of nature reserves and shell fisheries, to assess environmental impacts of building proposals including wind farms and highways and to assess the effects on nontarget organisms of chemicals for the control of agricultural pests.

Methods in Ecology and Evolution↗

USGS2021

Pedigree accumulation analysis: Combining methods from community ecology and population genetics for breeding adult estimation

Estimates of the number of successfully breeding adults ( N S ) in a population can predict levels of recruitment. However, assessments of N S are often difficult to obtain because encounters with adults are limited due to life-history characteristics, low abundance or other constraints associated with access to critical habitats. Alternatively, efforts to sample individuals at earlier ontogenetic stages can be more tractable, resulting in more comprehensive samples. To estimate N S , we describe, evaluate and apply two nonparametric species richness estimators to information associated with genetic pedigree reconstruction. Simulations compared bias and precision associated with Chao and Jackknife methods when estimating N S . We also evaluated N S estimation sensitivity to two sources of variation associated with species reproductive ecology (variance in reproductive success and sex ratio skew) and genetic pedigree assignment error. Finally, the application of our novel method was demonstrated in two different species and systems (Chinook Salmon in Oregon, USA and Lake Sturgeon in Michigan, USA). We found unbiased N S estimates were generated across a broad range of offspring sample sizes using the Chao method. Empirical results corroborated simulation-based expectations and highlighted applications where parents and offspring are sampled, and when only offspring are sampled. When offspring sample sizes are adequate and pedigree reconstruction errors are low, the combination of established methods from community ecology and genetic pedigree reconstruction provides an accurate alternative method to estimate N S that can facilitate population assessments.

Methods in Ecology and Evolution↗