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USGS2015

Standard operating procedures for collection of soil and sediment samples for the Sediment-bound Contaminant Resiliency and Response (SCoRR) strategy pilot study

An understanding of the effects on human and ecological health brought by major coastal storms or flooding events is typically limited because of a lack of regionally consistent baseline and trends data in locations proximal to potential contaminant sources and mitigation activities, sensitive ecosystems, and recreational facilities where exposures are probable. In an attempt to close this gap, the U.S. Geological Survey (USGS) has implemented the Sediment-bound Contaminant Resiliency and Response (SCoRR) strategy pilot study to collect regional sediment-quality data prior to and in response to future coastal storms. The standard operating procedure (SOP) detailed in this document serves as the sample-collection protocol for the SCoRR strategy by providing step-by-step instructions for site preparation, sample collection and processing, and shipping of soil and surficial sediment (for example, bed sediment, marsh sediment, or beach material). The objectives of the SCoRR strategy pilot study are (1) to create a baseline of soil-, sand-, marsh sediment-, and bed-sediment-quality data from sites located in the coastal counties from Maine to Virginia based on their potential risk of being contaminated in the event of a major coastal storm or flooding (defined as Resiliency mode); and (2) respond to major coastal storms and flooding by reoccupying select baseline sites and sampling within days of the event (defined as Response mode). For both modes, samples are collected in a consistent manner to minimize bias and maximize quality control by ensuring that all sampling personnel across the region collect, document, and process soil and sediment samples following the procedures outlined in this SOP. Samples are analyzed using four USGS-developed screening methods—inorganic geochemistry, organic geochemistry, pathogens, and biological assays—which are also outlined in this SOP. Because the SCoRR strategy employs a multi-metric approach for sample analyses, this protocol expands upon and reconciles differences in the sample collection protocols outlined in the USGS “National Field Manual for the Collection of Water-Quality Data,” which should be used in conjunction with this SOP. A new data entry and sample tracking system also is presented to ensure all relevant data and metadata are gathered at the sample locations and in the laboratories.

Open-File Report↗
USGS2010

Effects of low-impact-development (LID) practices on streamflow, runoff quantity, and runoff quality in the Ipswich River Basin, Massachusetts: A summary of field and modeling studies

Low-impact-development (LID) approaches are intended to create, retain, or restore natural hydrologic and water-quality conditions that may be affected by human alterations. Wide-scale implementation of LID techniques may offer the possibility of improving conditions in river basins, such as the Ipswich River Basin in Massachusetts, that have run dry during the summer because of groundwater withdrawals and drought. From 2005 to 2008, the U.S. Geological Survey, in a cooperative funding agreement with the Massachusetts Department of Conservation and Recreation, monitored small-scale installations of LID enhancements designed to diminish the effects of storm runoff on the quantity and quality of surface water and groundwater. Funding for the studies also was contributed by the U.S. Environmental Protection Agency’s Targeted Watersheds Grant Program through a financial assistance agreement with Massachusetts Department of Conservation and Recreation. The monitoring studies examined the effects of replacing an impervious parking-lot surface with a porous surface on groundwater quality, installing rain gardens and porous pavement in a neighborhood of 3 acres on the quantity and quality of stormwater runoff, and installing a 3,000-ft2 (square-foot) green roof on the quantity and quality of rainfall-generated roof runoff. In addition to these small-scale installations, the U.S. Geological Survey’s Ipswich River Basin model was used to simulate the basin-wide effects on streamflow of several changes: broad-scale implementation of LID techniques, reduced water-supply withdrawals, and water-conservation measures. Water-supply and conservation scenarios for application in model simulations were developed with the assistance of two technical advisory committees that included representatives of State agencies responsible for water resources, the U.S. Environmental Protection Agency, the U.S. Geological Survey, water suppliers, and non-governmental organizations. From June 2005 to June 2007, groundwater quality was monitored at the Silver Lake town beach parking lot in Wilmington, Massachusetts, prior to and following the replacement of the conventional, impervious-asphalt surface with a porous surface consisting primarily of porous asphalt and porous pavers designed to enhance rainfall infiltration into the groundwater and to minimize runoff to Silver Lake. Concentrations of phosphorus, nitrogen, cadmium, chromium, copper, lead, nickel, zinc, and total petroleum hydrocarbons in groundwater were monitored. Enhancing infiltration of precipitation did not result in discernible increases in concentrations of these potential groundwater contaminants. Concentrations of dissolved oxygen increased slightly in groundwater profiles following the removal of the impervious asphalt parking-lot surface. In Wilmington, Massachusetts, in a 3-acre neighborhood, stormwater runoff volume and quality were monitored to determine the ability of selected LID enhancements (rain gardens and porous paving stones) to reduce flows and loads of the selected constituents to Silver Lake. Water-quality samples were analyzed for nutrients, metals, total petroleum hydrocarbons, and total-coliform and E. coli bacteria. A decrease in runoff quantity was observed for storms of 0.25 inch or less of precipitation. Water-quality-monitoring results were inconclusive; there were no statistically significant differences in concentrations or loads when the pre- and post-installation-period samples were compared. In a third field study, the characteristics of runoff from a vegetated "green" roof and a conventional, rubber-membrane roof were compared. The two primary factors affecting the green roof’s water-storage capacity were the amount of precipitation and antecedent dry period. Although concentrations of many of the chemicals in roof runoff were higher from the green roof than from the conventional roof, the ability of the green roof to retain water generally resulted in decreased differences between the total amounts (loads) of the chemicals that ran off the roofs. Land-use and water-management changes associated with LID implementation were investigated at multiple spatial scales, using the U.S. Geological Survey’s Ipswich River Basin model, to evaluate the effects of updated water-supply withdrawals for the towns of Reading and Wilmington (representing new baseline conditions for all simulations), potential land-use changes at buildout (potential future development), widespread implementation of retrofitting LID techniques, basin-scale water withdrawal reductions based on water-conservation pilot programs conducted by the Massachusetts Department of Conservation and Recreation, and land-use change and LID applications at a local scale. The new baseline simulation indicated that reduced water-supply withdrawals for the towns of Reading and Wilmington led to substantially higher medium and low flows in most of the reaches upstream from the South Middleton streamgage in the upper Ipswich River basin. Overall, simulations pointed to the importance of spatial scale in determining the effects of land-use change and LID practices on streamflow. Potential land-use changes at buildout had modest effects on streamflow in most subbasins (percent differences of less than 20 percent) because relatively little land in the basin was available for development. Results of the simulations conducted to evaluate widespread effective-impervious-area reductions upstream from the South Middleton streamgage indicated that the percentages of urban land use and associated effective impervious area were too small for even a 50-percent reduction of effective impervious area to appreciably affect streamflow in most subbasins. In contrast, the results of the hypothetical local-scale simulations indicated that for smaller streams, with high percentages of urban land use and associated effective impervious area, land-use change, development patterns, and LID practices may have substantial effects on streamflow. Modeling studies concurred with the results of fieldwork in the assessment that LID enhancements would likely have the greatest effect on decreasing stormwater runoff when broadly applied to highly impervious urban areas.

Massachusetts↗
USGS2022

Riparian buffers provide refugia during secondary forest succession

Aim Secondary forests regenerating from human disturbance are increasingly becoming a predominant forest type in many regions, and they play a significant role in forest community dynamics. Understanding the factors that underlie the variation in species responses during secondary succession is important for understanding community assembly and biodiversity monitoring and management. Because species vary in ecology and behaviour, responses to ecosystem change should vary among species. Here, we show that habitat type (riparian, upland), phylogeny, and species traits mediate anuran and lizard probability of occurrence and species richness in pasture and secondary forest. Location Sarapiquí and Osa Peninsula, Costa Rica. Methods We used phylogenetic occupancy models to estimate assemblage-level and species-specific responses to forest succession in 30 chronosequence sites that include pasture, secondary forest regenerating from pasture, and mature forest sites. Results For the majority of species, we found increasing probability of occurrence in upland habitats as forest regenerated from pasture to secondary forest and similar probability of occurrence in riparian habitats across pasture, secondary forest, and mature forest sites. Species' responses to forest stage were phylogenetically correlated, and the trend was especially strong for anuran response to pasture sites. Anurans with lentic larval habitat had a positive occupancy response to pasture upland habitat, and anurans with lotic larval habitat had a variable response to different forest stages compared to mature forest. Main Conclusions Our study, which focuses on sites that are minimally isolated from mature forest reference sites, indicated that anuran and lizard occupancy rapidly recovered to a level similar to mature forest in a relatively short time span (approximately 20 years). Riparian habitats are key ecosystem features in our system and provide refugia for organisms in early successional stages. Maintenance of vegetation along streams shows that we can mitigate forest conversion by maintaining riparian buffers.

Osa Peninsula, Sarapiquí↗
USGS2014

Topographic lidar survey of the Alabama, Mississippi, and Southeast Louisiana Barrier Islands, from September 5 to October 11, 2012

This Data Series Report contains lidar elevation data collected from September 5 to October 11, 2012, for the barrier islands of Alabama, Mississippi and southeast Louisiana, including the coast near Port Fourchon. Most of the data were collected September 5–10, 2012, with a reflight conducted on October 11, 2012, to increase point density in some areas. Point cloud data—data points described in three dimensions—in lidar data exchange format (LAS), and bare earth digital elevation models (DEMs) in ERDAS Imagine raster format (IMG), are available as downloadable files. The point cloud data were processed to extract bare earth data; therefore, the point cloud data are organized into four classes: 1-unclassified, 2-ground, 7-noise and 9-water. Aero-Metric, Inc., was contracted by the U.S. Geological Survey (USGS) to collect and process these data. The lidar data were acquired at a horizontal spacing (or nominal pulse spacing) of 1 meter (m) or less. The USGS conducted two ground surveys in a small area on Chandeleur Island on September 6, 2012, one on bare earth and the other in both bare earth and vegetated areas. The USGS calculated a vertical root mean square error (RMSEz) of 0.072 m and an offset of 0.007 m using interpolated 2-m by 2-m resolution grid surfaces made from the lidar bare-earth data and the combined USGS ground surveys. Aero-Metric, Inc., calculated an RMSEz of 0.025 m by comparing the USGS bare earth ground survey point data to the closest lidar points. The USGS also conducted a terrestrial lidar survey on Dauphin Island, Louisiana, on September 3, 2012. The USGS calculated a RMSEz of 0.32 m and an offset of 0.27 m, meaning the lidar data were 0.27 m higher than the ground truth (Guy and others, 2013), using interpolated 2-m by 2-m resolution grid surfaces from the airborne lidar bare-earth data and the terrestrial lidar survey. This lidar survey was acquired to document the changes of several different barrier island systems resulting from Hurricane Isaac (Guy and others, 2013). The survey supports detailed studies of Louisiana, Mississippi and Alabama barrier islands that resolve annual and episodic changes in beaches, berms and dunes associated with processes driven by storms, sea-level rise, and even human restoration activities. These lidar data are available to Federal, State and local governments, emergency-response officials, resource managers, and the general public.

Alabama; Louisiana; Mississippi↗
USGS2002

Environmental setting and water-quality issues of the Mobile River Basin, Alabama, Georgia, Mississippi, and Tennessee

The Mobile River Basin is one of over 50 river basins and aquifer systems being investigated as part of the U.S. Geological Survey National Water-Quality Assessment (NAWQA) Program. This basin is the sixth largest river basin in the United States, and fourth largest in terms of streamflow, encompassing parts of Alabama, Georgia, Mississippi, and Tennessee. Almost two-thirds of the 44,000-square-mile basin is located in Alabama. Extensive water resources of the Mobile River Basin are influenced by an array of natural and cultural factors. These factors impart unique and variable qualities to the streams, rivers, and aquifers providing abundant habitat to sustain the diverse aquatic life in the basin. Data from Federal, State, and local agencies provide a description of the environmental setting of the Mobile River Basin. Environmental data include natural factors such as physiography, geology, soils, climate, hydrology, ecoregions, and aquatic ecology, and human factors such as reservoirs, land use and population change, water use, and water-quality issues. Characterization of the environmental setting is useful for understanding the physical, chemical, and biological characteristics of surface and ground water in the Mobile River Basin and the possible implications of that environmental setting for water quality. The Mobile River Basin encompasses parts of five physiographic provinces. Fifty-six percent of the basin lies within the East Gulf section of the Coastal Plain Physiographic Province. The remaining northeastern part of the basin lies, from west to east, within the Cumberland Plateau section of the Appalachian Plateaus Physiographic Province, the Valley and Ridge Physiographic Province, the Piedmont Physiographic Province, and the Blue Ridge Physiographic Province. Based on the 1991 land-use data, about 70 percent of the basin is forested, while agriculture, including livestock (poultry, cattle, and swine), row crops (cotton, corn, soybeans, sorghum, and wheat), and pasture land accounts for about 26 percent of the study unit. Agricultural land use is concentrated along the Black Prairie Belt district of the Coastal Plain. Urban areas account for only 3 percent of the total land use; however, the areal extent of the metropolitan statistical areas (MSA) may indicate more urban influences. The MSAs include urban areas outside of the city boundaries and can include adjacent counties. Seven MSAs are delineated in the Mobile River Basin, including Montgomery, Mobile, Tuscaloosa, Birmingham, Gadsden, Anniston, and Atlanta. The total population for the Mobile River Basin was about 3,673,100 in 1990. State water-quality agencies have identified numerous causes and sources of water-body impairment in the Mobile River Basin. In 1996, organic enrichment, dissolved oxygen depletion, elevated nutrient concentrations, and siltation were the most frequently cited causes of impairment, affecting the greatest number of river miles. Bacteria, acidic pH, and elevated metal concentrations also were identified as causes of impairment. The sources for impairment varied among river basins, were largely a function of land use, and were attributed primarily to municipal and industrial sources, mining, and agricultural activities.

Water-Resources Investigations Report↗
USGS2021

The ten steps to responsible Inland fisheries in practice: Reflections from diverse regional case studies around the globe

Inland fisheries make substantial contributions to food security and livelihoods locally, regionally, and globally but their conservation and management have been largely overlooked by policy makers. In an effort to remedy this limited recognition, a cross-sectoral community of scientists, practitioners, and policy makers from around the world convened a high-level meeting in 2015 at the Food and Agriculture Organization of the United Nations headquarters in Rome, Italy to develop recommendations for sustainable inland fisheries management. This meeting resulted in the production of the Rome Declaration, outlining ten key steps needed to achieve responsible inland fisheries. When the Ten Steps were conceived, they were framed in a global context because inland fisheries around the world face similar challenges, and it was hoped that these large-scale and ambitious steps would draw the attention of regional or international bodies for greater investment in their proper management. Most inland fisheries, however, are managed at a local (often community, watershed, or waterbody) scale with the “on-the-ground” practitioners, managers, assessment biologists, and stewardship officers responsible for achieving the promise of the Ten Steps. Here, we reflect on the relevance of the Ten Steps to practitioners using six regional case studies from around the globe (North America, South America, Europe, Asia, Australia, and Africa) to identify the extent to which existing efforts align with the Ten Steps and where there are opportunities to do more. Learning what is effective from local/regional actions should better inform a more global “action plan” and provide tangible guidance for implementation recognizing that global guidance needs to be informed by and acted upon by local practitioners. We conclude by considering the common challenges, synergies, and other emergent properties that arise from these case studies, and use these as a path forward to advancing responsible management of inland fisheries through the Rome Declaration. Of particular importance is the need to balance the high-level aspirational goals of the Ten Steps with the local cultural, socio-economic, and institutional realities that ultimately influence how humans interact with fisheries resources and aquatic ecosystems. This assessment provides valuable information on how to refine and implement the Ten Steps recognizing that success will require coordinated efforts among on-the-ground practitioners, scientists, stakeholders, rightsholders and international decision makers.

Reviews in Fish Biology and Fisheries↗
USGS2013

U.S. Geological Survey climate and land use change science strategy—A framework for understanding and responding to global change

Executive Summary The U.S. Geological Survey (USGS), a nonregulatory Federal science agency with national scope and responsibilities, is uniquely positioned to serve the Nation’s needs in understanding and responding to global change, including changes in climate, water availability, sea level, land use and land cover, ecosystems, and global biogeochemical cycles. Global change is among the most challenging and formidable issues confronting our Nation and society. Scientists agree that global environmental changes during this century will have far-reaching societal implications (Intergovernmental Panel on Climate Change, 2007; U.S. Global Change Research Program, 2009). In the face of these challenges, the Nation can benefit greatly by using natural science information in decisionmaking. Since the passage of the U.S. Global Change Research Act of 1990, the USGS has made substantial scientific contributions to understanding the interactive living and nonliving components of the Earth system. USGS natural science activities have led to fundamental advances in observing and understanding climate and land-cover change and the effects these changes have on ecosystems, natural-resource availability, and societal sustainability. Most of these major advances were pursued in partnership with other organizations within and outside the Department of the Interior. The inherent value of partnerships with other U.S. Global Change Research Program agencies and natural-resource managers is emphasized in all aspects of the planning and implementation of this Science Strategy for the coming decade. Over the next 10 years, the USGS will make substantial contributions to understanding how Earth systems interact, respond to, and cause global change. The USGS will work with science partners, decisionmakers, and resource managers at local to international levels (including Native American tribes) to improve understanding of past and present change; develop relevant forecasts; and identify those lands, resources, and communities most vulnerable to global change processes. Science will play an essential role in helping communities and land and resource managers understand local to global implications, anticipate effects, prepare for changes, and reduce the risks associated with decisionmaking in a changing environment. USGS partners and stakeholders will benefit from the data, predictive models, and decision-support products and services resulting from the implementation of this strategy. This Science Strategy recognizes core USGS strengths that are applied to key societal problems. It establishes seven goals for USGS global change science and strategic actions that may be implemented in the short term (1–5 years) and the longer term (5–10 years) to improve our understanding of the following areas of inquiry: Rates, causes, and impacts of past global changes; The global carbon cycle; Biogeochemical cycles and their coupled interactions; Land-use and land-cover change rates, causes, and consequences; Droughts, floods, and water availability under changing land-use and climatic conditions; Coastal response to sea-level rise, climatic change, and human development; and Biological responses to global change. In addition to the seven thematic goals, we address the central role of monitoring in accordance with the USGS Science Strategy recommendation that global change research should rely on existing “…decades of observational data and long-term records to interpret consequences of climate variability and change to the Nation’s biological populations, ecosystems, and land and water resources” (U.S. Geological Survey, 2007, p. 19). We also briefly describe specific needs and opportunities for coordinating USGS global change science among USGS Mission Areas and address the need for a comprehensive and sustained communications strategy.

Circular↗
USGS2018

Hydrology-driven chemical loads transported by the Green River to the Lower Duwamish Waterway near Seattle, Washington, 2013–17

The sediments in the Lower Duwamish Waterway Superfund site in Seattle, Washington, are contaminated with chemicals including metals such as arsenic, polychlorinated biphenyls (PCBs), carcinogenic polycyclic aromatic hydrocarbons (cPAHs), and dioxins/furans from decades of intense anthropogenic activities. The U.S. Geological Survey, in cooperation with the Washington State Department of Ecology, collected new data from 2013 to 2017 to estimate sediment and chemical loads transported by the Green/Duwamish River to the Lower Duwamish Waterway Superfund site (the final 8-kilometer reach of the river) in support of sediment remediation within the site. Chemical loads were calculated as the product of river suspended-sediment loads and suspended sediment-bound chemical concentrations measured at river kilometer 16.7. Using four different approaches, annual suspended sediment-bound chemical load estimates transported by the river to the Lower Duwamish Waterway were in the range of 1,120–1,470 kilograms arsenic, 2,810–8,200 grams (g) toxic equivalent cPAHs, 205–407 milligrams toxic equivalent dioxins/furans, and 340–1,180 g PCBs. Storm events contributed a disproportionately large amount of the load of anthropogenic organic compounds such as cPAHs (54 percent), dioxins/furans (44 percent), and PCBs (52 percent) as compared to overall time (17 percent). Chemical concentrations and load estimates often were underestimated using results from unfiltered water analysis only, especially in samples with high suspended-sediment concentrations and for hydrophobic organic chemicals such as cPAHs that prefer to sorb to particulates and are at low concentrations near or below the analytical limits of water methods. For metals and PCBs, the dissolved concentration was relatively low and consistent between sampling events, whereas the suspended sediment-bound chemical concentrations contributed most of the chemical concentration in the water column during periods of high river suspended-sediment concentrations. However, the dissolved fraction, on average, contributed more than one-third of the estimated total chemical load in the river system for arsenic and PCBs, even given the hydrophobic nature of the chemicals. These results suggest that the sum of the chemical concentrations measured on two separate fractions—the particulate fraction and the dissolved fraction—more fully represents the total chemical concentration as compared to analysis of an unfiltered water sample, especially in samples with high suspended-sediment concentrations. Most of the suspended-sediment load (97 percent) and sediment-bound chemical load (92–94 percent) occurred during the wet winter half of the year from October 15 to April 14. However, the highest sediment-bound chemical concentrations often occurred during short intense storms or “first flush” autumn runoff events during the dry summer half of the year from April 15 to October 14. Because of the highly variable and dynamic river system characteristics (including precipitation, discharge, sediment concentration, and tidal fluctuations), it is critical to characterize the occurrence, frequency, concentrations, and loads during extreme conditions (for example, when the river is affected by storm-derived runoff) rather than time-averaged conditions. These short extreme events have a high potential for acute effects on ecological and human health, and may have a great influence on the effectiveness of the sediment remediation activities that are underway in the Lower Duwamish Waterway.

Washington↗
USGS2016

Biogeographical history and coalescent species delimitation of Pacific island skinks (Squamata: Scincidae: Emoia cyanura species group)

Aim A prevailing hypothesis for how Pacific islands organisms have obtained their extant distributions is that of a stepping-stone model, in which populations originate from Papua New Guinea in the western Pacific and gradually disperse eastward. Here, we test this model using a spatiotemporal framework for Emoia cyanura and E. impar , two species within the Emoia cyanura species group (ECSG; Family: Scincidae). We further assess species limits within the group, utilizing novel coalescent methods. Location Pacific Islands. Methods We obtained DNA sequence data from one mitochondrial and three nuclear markers for 117 individuals, representing seven of the nine species within the ECSG. These data were analysed for concordance with the stepping-stone model using estimation of population structure, divergence dates, and historical biogeographical range. To assess hypotheses of independent lineages within each widespread species, we also employed the Bayesian Phylogenetics & Phylogeography (BPP) program to define operational taxonomic units in *BEAST. Results Population structure analyses consistently found individuals from western island groups representing divergent populations, with central and eastern populations demonstrating minimal genetic variation. Phylogenetic hypotheses support a western origin for E. cyanura and E. impar , while biogeographical and divergence time estimations predict a recent and rapid expansion out of the western Pacific. The BPP and *BEAST analyses found evidence for five independent lineages within E. impar and five independent lineages within E. cyanura / E. pseudocyanura . Main conclusions In contrast to the expectations of a stepping-stone model, E. cyanura and E. impar each exhibit the genetic signature of a rapid radiation during the mid to late Pleistocene, with evidence for newly identified lineages, mainly on western islands. Of these recovered lineages, we propose three to be elevated to species status. These findings expand our understanding of endemic Pacific biota, which are subject to conservation threats from human impacts and climate change.

Journal of Biogeography↗
USGS2025

Second Integrated Hydro-Terrestrial Modeling (IHTM 2.0) workshop: USGCRP federal agency perspectives

U.S. federal leadership, mobilizing close interagency coordination across sectors, is key to tackling compound climate and human impacts on our nation’s water resources. Recognizing this need, federal agencies and academic collaborators conducted a series of workshops to advance Integrated Hydro-Terrestrial Modeling (IHTM). IHTM is focused on supporting a multiscale framework to accelerate research insights, better integrate operational and planning perspectives, and bridge national-to-regional capabilities to address major interdependent societal water challenges. This framework leverages the capabilities of different agencies and institutional partners across sectors to advance a shared vision for use-inspired modeling and open science. The IHTM conceptual framework has developed over several community workshops in recent years: ● In September 2019, a community coordinating group on IHTM hosted an interagency workshop (“IHTM 1.0”) with support from NSF, DOE, and USGS. The resulting report identified the need for agencies to invest resources in designing pilot use cases, setting the stage for an integrated national IHTM capability. ● In November 2020, the U.S. Global Change Research Program (USGCRP) held a virtual Coastal-IHTM (C-IHTM) workshop in collaboration with the MultiSector Dynamics Community of Practice, which engages researchers across universities and national labs. Building on IHTM 1.0, this workshop aimed to identify coastal modeling capabilities and appropriate coastal applications of the IHTM framework. The workshop report detailed needs for open science, geographical or topical use cases, integrated modeling frameworks, and linking communities of practice. ● From October 31 to November 2, 2023, USGCRP hosted a hybrid IHTM 2.0 community workshop that brought together 160 scientists and managers from nine federal departments/agencies (DHS-FEMA, DOC-NOAA, DoD-USACE, DOE, DOI [U.S. Bureau of Reclamation (USBR), USGS], EPA, NASA, NSF, USDA [ARS, FS, NRCS]) and 32 non-federal academic, non-profit, and private institutions and consortiums. The workshop was organized by a federal Interagency Steering Committee with representatives from DOE, USGS, NSF, NASA, and NOAA, as well as a Scientific Organizing Committee comprising experts from academia and additional federal agency technical experts. The IHTM 2.0 workshop focused on moving the IHTM 1.0 concepts to action by making advances in designing national and regional integrated modeling experiments in five geographic testbeds. These modeling testbeds seek to facilitate collaborative water resources research and assessment that responds to societal needs, extending from basic research to resource management operations, including the assessment of water quantity, quality, and use at national and regional scales. Ultimately, we envision that the IHTM testbeds will improve our ability to provide water resources assessment scenarios to decision-makers and the public. This document summarizes USGCRP and member agencies’ perspectives of the IHTM 2.0 workshop. Sections 2 and 3 build on the work of the IHTM 2.0 workshop Scientific Organizing Committee to outline the importance of IHTM, summarize the workshop, and propose near- and medium-term IHTM priorities. Section 4 presents select ongoing and potential interagency activities that could help realize the IHTM 2.0 vision and align with three of USGCRP’s strategic goals for this decade: Advancing Science, Informing Decisions, and Engaging the Nation. Finally, Section 5 summarizes this report and offers information about how to connect with USGCRP’s IHTM activities. USGCRP and its member agencies are well-positioned to coordinate federal efforts to enhance IHTM capabilities in the coming years.

Conference Paper↗
USGS2020

How and why is the timing and occurrence of seasonal migrants in the Gulf of Maine changing due to climate?

Plants and animals undergo certain recurring life-cycle events, such as migrations between summer and winter habitats or the annual blooming of plants. Known as phenology, the timing of these events is very sensitive to changes in climate (and changes in one species’ phenology can impact entire food webs and ecosystems). Shifts in phenology have been described as a “fingerprint” of the temporal and spatial responses of wildlife to climate change impacts. Thus, phenology provides one of the strongest indicators of the adaptive capacity of organisms (or the ability of organisms to cope with future environmental conditions). In this study, researchers are exploring how the timing and occurrence of a number of highly migratory marine animals is changing due to a series of climatic and ecological shifts. First, using existing long-term historical data series, they will determine the direction and magnitude of how migration, abundance, or other phenological factors have changed for marine mammals, sea turtles, and fishes that migrate into the Gulf of Maine on a seasonal basis. Because marine animals are inherently difficult to detect, the team will apply dynamic occupancy models to evaluate seasonal migration patterns and habitat use across multiple habitats in the Gulf of Maine region. The project team will also synthesize regional information on a key, ecologically-important prey fish, sandlance, whose timing and abundance is a strong predictor of the occurrence and behavior of predator species targeted in this study as well as a range of other regional fish and wildlife of conservation and management concern. Results from this component of the project will identify coastal fish and wildlife species that are relatively more or less able to adapt and thus potentially vulnerable to climate change; determine the likely primary drivers of those changes; and identify data gaps and future monitoring needs. Ultimately, this information will be available and useful for regional coastal management and adaptation decisions that will allow managers to effectively plan for the future. In a second component of the project, researchers will focus specifically on changes in migration patterns of the endangered North Atlantic right whale. While shifts in the distribution and time of recurring life events are adaptive responses that may help species cope with climate impacts, they can also lead to changes in how species interact with humans. The North Atlantic right whale is one of the most endangered whale species on the planet. In the North Atlantic Ocean, ship strikes and entanglements with commercial fishing gear represent fatal threats to right whales. Recent reports suggest that North Atlantic right whale migration patterns have changed. Many researchers posit that shifts in migration are responsible for recent increases in the overlap between right whales and human activities, especially fishing. To help understand how changes in right whale movements and behaviors may overlap with ship traffic, and thus put the animals at risk of encountering vessels, we will combine right whale habitat models with ship traffic maps. The end result will be a set of maps identifying risk levels.

Gulf of Maine↗
USGS2025

AviList: A unified global bird checklist

Universally recognized scientific names for organisms are necessary for accurate and efficient communication. Incongruence in taxonomic treatments results in situations where one name is used for different entities or one entity is known by different names, with negative consequences for conservation, science, trade, legislation, law enforcement, and education, leading to discord among stakeholders and confusion among users. Within the ornithological community taxonomic incongruence among four widely adopted global bird checklists has led to calls for the development of a single unified global avian taxonomy or checklist. Here we introduce AviList, a comprehensive, collaborative and evolving effort towards developing a unified global avian taxonomy, spearheaded by representatives of most current global checklists and many major regional authorities, and supported by the International Ornithologists’ Union (IOU), BirdLife International and the Cornell Lab of Ornithology. AviList version 2025, the first version, was officially launched on 11 June 2025 and is available online as a comprehensive, searchable public-access database. It recognizes 11,131 bird species in 2376 genera, 252 families and 46 orders. This global effort has resolved over 1000 species-level taxonomic incongruences among existing checklists. With AviList’s launch, the IOC World Bird List and the Clements Checklist of Birds of the World have ceased any independent taxonomic updates, while BirdLife International is in the process of total alignment, leading to a harmonization in the classification underpinning a number of major bird projects, including eBird, Macaulay Library, Merlin Bird ID and the IUCN Red List. Adoption of AviList will improve inter-operability across global biodiversity, molecular, ecological and spatial databases (e.g. GBIF). Strong governance of AviList will ensure it is a “living” document that is regularly updated by a global community of bird taxonomists as new scientific advances are made, with positive impacts for conservation, academia and human society. It is hoped that AviList will support and encourage taxonomic science by identifying areas where further research is most needed, and that it will provide a blueprint for taxonomic authorities in other organismic groups endeavoring to achieve taxonomic harmonization.

Biodiversity and Conservation↗
USGS2009

Quality of Shallow Groundwater and Drinking Water in the Mississippi Embayment-Texas Coastal Uplands Aquifer System and the Mississippi River Valley Alluvial Aquifer, South-Central United States, 1994-2004

The Mississippi embayment-Texas coastal uplands aquifer system is an important source of drinking water, providing about 724 million gallons per day to about 8.9 million people in Texas, Louisiana, Mississippi, Arkansas, Missouri, Tennessee, Kentucky, Illinois, and Alabama. The Mississippi River Valley alluvial aquifer ranks third in the Nation for total withdrawals of which more than 98 percent is used for irrigation. From 1994 through 2004, water-quality samples were collected from 169 domestic, monitoring, irrigation, and public-supply wells in the Mississippi embayment-Texas coastal uplands aquifer system and the Mississippi River Valley alluvial aquifer in various land-use settings and of varying well capacities as part of the U.S. Geological Survey's National Water-Quality Assessment Program. Groundwater samples were analyzed for physical properties and about 200 water-quality constituents, including total dissolved solids, major inorganic ions, trace elements, radon, nutrients, dissolved organic carbon, pesticides, pesticide degradates, and volatile organic compounds. The occurrence of nutrients and pesticides differed among four groups of the 114 shallow wells (less than or equal to 200 feet deep) in the study area. Tritium concentrations in samples from the Holocene alluvium, Pleistocene valley trains, and shallow Tertiary wells indicated a smaller component of recent groundwater than samples from the Pleistocene terrace deposits. Although the amount of agricultural land overlying the Mississippi River Valley alluvial aquifer was considerably greater than areas overlying parts of the shallow Tertiary and Pleistocene terrace deposits wells, nitrate was rarely detected and the number of pesticides detected was lower than other shallow wells. Nearly all samples from the Holocene alluvium and Pleistocene valley trains were anoxic, and the reducing conditions in these aquifers likely result in denitrification of nitrate. In contrast, most samples from the Pleistocene terrace deposits in Memphis, Tennessee, were oxic, and the maximum nitrate concentration measured was 6.2 milligrams per liter. Additionally, soils overlying the Holocene alluvium and Pleistocene valley trains, generally in areas near the wells, had lower infiltration rates and higher percentages of clay than soils overlying the shallow Tertiary and Pleistocene terrace deposits wells. Differences in these soil properties were associated with differences in the occurrence of pesticides. Pesticides were most commonly detected in samples from wells in the Pleistocene terrace deposits, which generally had the highest infiltration rates and lowest clay content. Median dissolved phosphorus concentrations were 0.07, 0.11, and 0.65 milligram per liter in samples from the shallow Tertiary, Pleistocene valley trains, and Holocene alluvium, respectively. The widespread occurrence of dissolved phosphorus at concentrations greater than 0.02 milligram per liter suggests either a natural source in the soils or aquifer sediments, or nonpoint sources such as fertilizer and animal waste or a combination of natural and human sources. Although phosphorus concentrations in samples from the Holocene alluvium were weakly correlated to concentrations of several inorganic constituents, elevated concentrations of phosphorus could not be attributed to a specific source. Phosphorus concentrations generally were highest where samples indicated anoxic and reducing conditions in the aquifers. Elevated dissolved phosphorus concentrations in base-flow samples from two streams in the study area suggest that transport of phosphorus with groundwater is a potential source contributing to high yields of phosphorus in the lower Mississippi River basin. Water from 55 deep wells (greater than 200 feet deep) completed in regional aquifers of Tertiary age represent a sample of the principal aquifers used for drinking-water supply in the study area. The wells were screened in both confined and

Scientific Investigations Report↗
USGS2013

Impact of Late Holocene climate variability and anthropogenic activities on Biscayne Bay (Florida, U.S.A.): Evidence from diatoms

Shallow marine ecosystems are experiencing significant environmental alterations as a result of changing climate and increasing human activities along coasts. Intensive urbanization of the southeast Florida coast and intensification of climate change over the last few centuries changed the character of coastal ecosystems in the semi-enclosed Biscayne Bay, Florida. In order to develop management policies for the Bay, it is vital to obtain reliable scientific evidence of past ecological conditions. The long-term records of subfossil diatoms obtained from No Name Bank and Featherbed Bank in the Central Biscayne Bay, and from the Card Sound Bank in the neighboring Card Sound, were used to study the magnitude of the environmental change caused by climate variability and water management over the last ~ 600 yr. Analyses of these records revealed that the major shifts in the diatom assemblage structures at No Name Bank occurred in 1956, at Featherbed Bank in 1966, and at Card Sound Bank in 1957. Smaller magnitude shifts were also recorded at Featherbed Bank in 1893, 1942, 1974 and 1983. Most of these changes coincided with severe drought periods that developed during the cold phases of El Niño Southern Oscillation (ENSO), Atlantic Multidecadal Oscillation (AMO) and Pacific Decadal Oscillation (PDO), or when AMO was in warm phase and PDO was in the cold phase. Only the 1983 change coincided with an unusually wet period that developed during the warm phases of ENSO and PDO. Quantitative reconstructions of salinity using the weighted averaging partial least squares (WA-PLS) diatom-based salinity model revealed a gradual increase in salinity at the three coring locations over the last ~ 600 yr, which was primarily caused by continuously rising sea level and in the last several decades also by the reduction of the amount of freshwater inflow from the mainland. Concentration of sediment total nitrogen (TN), total phosphorus (TP) and total organic carbon (TOC) increased in the second half of the 20th century, which coincided with the construction of canals, landfills, marinas and water treatment plants along the western margin of Biscayne Bay. Increased magnitude and rate of the diatom assemblage restructuring in the mid- and late-1900s, suggest that large environmental changes are occurring more rapidly now than in the past.

Florida↗
USGS2009

Organic Compounds in Running Gutter Brook Water Used for Public Supply near Hatfield, Massachusetts, 2003-05

The 258 organic compounds studied in this U.S. Geological Survey (USGS) assessment generally are man-made, including pesticides, solvents, gasoline hydrocarbons, personal-care and domestic-use products, and pavement and combustion-derived compounds. Of these 258 compounds, 26 (about 10 percent) were detected at least once among the 31 samples collected approximately monthly during 2003-05 at the intake of a flowthrough reservoir on Running Gutter Brook in Massachusetts, one of several community water systems on tributaries of the Connecticut River. About 81 percent of the watershed is forested, 14 percent is agricultural land, and 5 percent is urban land. In most source-water samples collected at Running Gutter Brook, fewer compounds were detected and their concentrations were low (less than 0.1 micrograms per liter) when compared with compounds detected at other stream sites across the country that drain watersheds that have a larger percentage of agricultural and urban areas. The relatively few compounds detected at low concentrations reflect the largely undeveloped land use at Running Gutter Brook. Despite the absence of wastewater discharge points on the stream, however, the compounds that were detected could indicate different sources and uses (point sources, precipitation, domestic, and agricultural) and different pathways to drinking-water supplies (overland runoff, groundwater discharge, leaking of treated water from distribution lines, and formation during treatment). Six of the 10 compounds detected most commonly (in at least 20 percent of the samples) in source water also were detected commonly in finished water (after treatment but prior to distribution). Concentrations in source and finished water generally were below 0.1 micrograms per liter and always less than humanhealth benchmarks, which are available for about one-half of the compounds detected. On the basis of this screening-level assessment, adverse effects to human health are expected to be negligible (subject to limitations of available humanhealth benchmarks).

Fact Sheet↗
USGS2017

Characterization of the quality of water, bed sediment, and fish in Mittry Lake, Arizona, 2014–15

Water, bed-sediment, and fish sampling was conducted in Mittry Lake, Arizona, in 2014–15 to establish current water-quality conditions of the lake. The parameters of temperature, dissolved-oxygen concentration, specific conductance, and alkalinity were measured in the field. Water samples were collected and analyzed for dissolved major ions, dissolved trace elements, dissolved nutrients, dissolved organic carbon, dissolved pesticides, bacteria, and suspended-sediment concentrations. Bed-sediment and fish samples were analyzed for trace elements, halogenated compounds, total mercury, and methylmercury. U.S. Environmental Protection Agency secondary maximum contaminant levels in drinking water were exceeded for sulfate, chloride, and manganese in the water samples. Trace-element concentrations were relatively similar between the inlet, middle, and outlet locations. Concentrations for nutrients in all water samples were below the Arizona Department of Environmental Quality’s water-quality standards for aquatic and wildlife uses, and all bacteria levels were below the Arizona Department of Environmental Quality’s recommended recreational water-quality criteria. Three out of 81 pesticides were detected in the water samples. Trace-element concentrations in bed sediment were relatively consistent between the inlet, middle, and outlet locations. Lead, manganese, nickel, and zinc concentrations, however, decreased from the inlet to outlet locations. Concentrations for lead, nickel, and zinc in some bed-sediment samples exceeded consensus-based sediment-quality guidelines probable effect concentrations. Eleven out of 61 halogenated compounds were detected in bed sediment at the inlet location, whereas three were detected at the middle location, and five were detected at the outlet location. No methylmercury was detected in bed sediment. Total mercury was detected in bed sediment at concentrations below the consensus-based sediment-quality guidelines probable effect concentration. Sixteen trace elements were detected in at least one of the fish-tissue samples, and trace-element concentrations were relatively consistent between the three fish-tissue samples. Seven halogenated compounds were detected in at least one of the whole-body fish samples; four to five compounds were detected in each fish. One fish-tissue sample exceeded the U.S. Environmental Protection Agency human health consumption criteria for methylmercury.

Texas↗
USGS2005

Status of and changes in water quality monitored for the Idaho statewide surface-water-quality network, 1989—2002

The Idaho statewide surface-water-quality monitoring network consists of 56 sites that have been monitored from 1989 through 2002 to provide data to document status and changes in the quality of Idaho streams. Sampling at 33 sites has covered a wide range of flows and seasons that describe water-quality variations representing both natural conditions and human influences. Targeting additional high- or low-flow sampling would better describe conditions at 20 sites during hydrologic extremes. At the three spring site types, sampling covered the range of flow conditions from 1989 through 2002 well. However, high flows at these sites since 1989 were lower than historical high flows as a result of declining ground-water levels in the Snake River Plain. Summertime stream temperatures at 45 sites commonly exceeded 19 and 22 degrees Celsius, the Idaho maximum daily mean and daily maximum criteria, respectively, for the protection of coldwater aquatic life. Criteria exceedances in stream basins with minimal development suggest that such high temperatures may occur naturally in many Idaho streams. Suspended-sediment concentrations were generally higher in southern Idaho than in central and northern Idaho, and network data suggest that the turbidity criteria are most likely to be exceeded at sites in southern Idaho and other sections of the Columbia Plateaus geomorphic province. This is probably because this province has more fine-grained soils that are subject to erosion and disturbance by land uses than the Northern Rocky Mountains province of northern and central Idaho has. Although erodable soils are likely a cause of elevated turbidities, suspended-sediment concentrations were not strongly correlated with turbidities. Dissolved-solids and hardness concentrations were strongly correlated. This is probably because the limestones present in some basins are more soluble than the igneous rocks that predominate in others. Low hardness in streams of northern Idaho, where watersheds are underlain by resistant igneous rocks, enhances the toxicity of some trace elements to aquatic life in these streams. Only a few measurements of dissolved-oxygen concentrations at six sites were less than 6.0 milligrams per liter, the Idaho minimum criterion for protection of aquatic organisms. High supersaturations of dissolved oxygen at four sites suggest excessive photosynthetic activity by algal communities. Nighttime monitoring would help determine whether dissolved-oxygen concentrations at these sites might fall below the Idaho criterion. Data from four sites suggest that dissolved-oxygen concentrations may have decreased over time. The pH at 15 sites sometimes fell outside the range specified (6.5-9.0) for the protection of aquatic organisms in Idaho streams. Values exceeded 9.0 at 10 sites, probably because of excessive algal photosynthetic activity in waters where carbonate rocks are present. Values were sometimes less than 6.5 at five sites in areas of mountain bedrock geology where pH is likely to be naturally low. Mining activities also may contribute to low pH at some of these sites. Inorganic nitrogen and total phosphorus concentrations commonly exceeded those considered sufficient for supporting excess algal production (0.3 and 0.1 milligrams per liter, respectively). Data from a few sites suggest that nitrogen and(or) phosphorus concentrations might be changing over time. Low concentrations of nitrogen and phosphorus at six sites, most representing forested basins, might make them good candidates as reference sites that represent naturally occurring nutrient concentrations. Trace elements examined for this report were cadmium, copper, lead, mercury, selenium, and zinc. In water, many trace-element concentrations were below the minimum analytical reporting levels. Concentrations of cadmium, copper, lead, and zinc generally were highest in mined and other mineral-rich basins in northern Idaho. Concentrations of mercury were

Idaho↗
USGS1980

Quaternary stratigraphic sections with radiocarbon dates, Chandler Lake Quadrangle, Alaska

Twenty-eight organic samples from 17 localities in the Anaktuvuk, Tulunga, and Itkillik Valleys and at Shainin Lake range in age from more than 40,000 to about 1000 14C yr B.P. These dates, combined with fossil identifications and measured stratigraphic sections, provide significant insights into the history of glaciation, climatic change, and related events of late Quaternary time in the north-central Brooks Range. Two dates from Tulunga Valley show that peat-forming intervals during the middle Wisconsin and during an earlier period were terminated by episodes of loess accretion that probably correspond to glaciations in the Brooks Range. The Anayaknaurak Bluff exposure in Anaktuvuk Valley contains a weathered till of the Banded Mountain (Itkillik I) glaciation overlain by unweathered outwash gravel of Antler Valley (Itkillik II) age. Radiocarbon dates from finer alluvium above the outwash indicate that a subsequent glacial readvance north of the range front occurred shortly after 13,000 yr B.P. This event was synchronous with a major glacial readvance that culminated between about 12,900 and 12,700 yr B.P. farther east in the Atigun and Sagavanirktok Valleys. Additional dates from Anaktuvuk Valley show that glacier ice had retreated from the Antler Valley end-moraine complex by 10,600 yr B.P. The elongate basin that formed behind the moraine dam was being filled by alluvium at this time, and filling continued as late as 6200 yr B.P. near the range front. A possible climatic reversal during this interval is suggested by dates from Anaktuvuk Valley and from Toolik Valley farther east, which show peat formation between about 9500 and 8200 yr B.P. followed by solifluction and fan-building. Soil test pits and other excavations near Anaktuvuk Pass show that the pass was deglaciated some time prior to 7250 yr B.P., and was suitable for human habitation by at least 6500 yr B.P. Dated buried peat suggests a change to more severe frost climate sometime after about 4750 yr B.P. Other dates from the Chandler Lake quadrangle bear mainly on formation of low (generally 2.5 to 6 m) river terraces during intervals of renewed glaciation at valley heads during the late Holocene. Neoglaciation in the north-central Brooks Range evidently began about 3500 yr B.P., or at least was perceptible by this time as increased loess influx to sites north of the range front. Stream alluviation was in progress 2800-2700 yr B.P. at sites near Anaktuvuk Pass, and continued until sometime after 2000 yr B.P. Final phases of alluviation began about 1200 and 450 yr B.P. Independent dating of cirque-glacier advances by lichenometry supports the alluvial chronology and suggests that alluviation was controlled largely by increased sediment yield to streams during times of cirque-glacier expansion and increased rock-glacier activity.

Alaska↗