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At least 1,135 records · Page 63Linked to original sources
USGS2025

Synthesis of observed field salinity ranges for oyster and seagrass species in the U.S.

Oyster and seagrass are important sessile, habitat-forming species that may be impacted by changes in salinity regimes from anthropogenic or climatic drivers. While salinity tolerance literature is focused on controlled experiments, observed field salinity ranges of species are more disparate. The salinity ranges in which organisms are observed in the field may not align exactly with their experimentally (wet lab) determined physiological salinity tolerances, since other critical factors control species occurrence. We performed a systematic review to synthesize observed practical salinity ranges for 10 oyster and 12 seagrass species in coastal waters of the United States. Of initially returned search results for oysters and seagrass, only 11.4% and 6.5% met our review inclusion criteria, respectively, corresponding to 3 oyster species and 5 seagrass species. The majority (95%) of the 57 reviewed studies were along the Atlantic and Gulf coasts, with 68% focusing on Crassostrea virginica . Shorter studies following episodic events were more common than long-term monitoring. Observed field salinity ranges were as follows (ppt): Crassostrea virginica (0.1 – 42.8, mean: 19.6), Ostrea lurida (1.7 – 32.5, mean: 27.8), Thalassia testudinum (0 – 65, mean 31.8), Halodule wrightii (<0.5 – 68.7, mean: 18.5), Syringodium filiforme (13.7 – 68.7, mean: 30.4), Ruppia maritima (0 – 29.4, mean: 3.8), and Zostera marina (19.7 – 51.2, mean: 28.9). Place-based examples highlight how reported overlapping salinity ranges for oyster and seagrass species can be used to expand existing habitat suitability models, inform restoration, and provide considerations for guiding holistic management of freshwater inflows to estuaries.

Estuaries and Coasts↗
USGS2025

Assessing environmental drivers and protist community dynamics that shaped the historic August 2022 Heterosigma akashiwo bloom in San Francisco Bay, California

San Francisco Bay, California, typically has chlorophyll a (chl- a ) concentrations below 10 µg L −1 , despite nutrient loadings exceeding those in many estuaries with recurring harmful algal blooms (HABs). However, in August 2022 there was a Heterosigma akashiwo (raphidophyte) bloom with chl- a concentrations exceeding 450 µg L −1 , resulting in widespread hypoxia and fish die-off. We used protist community (18S ribosomal ribonucleic acid gene metabarcoding) and environmental data collected 2–3 times per month from 2015–2023 to assess differences between 2022 and other years, and capture dynamics pre-, during, and post-bloom. The 2022 protist community clustered separately from other years in non-metric multidimensional scaling and hierarchical cluster analyses. A diatom bloom in June generated the highest median June chl- a concentration (15 µg L −1 ) recorded between 1977–2023 and drew down nutrients (nitrogen, silicate), leading to the establishment of a heterotrophic community in July with low dinoflagellate abundance (0.9% of protists versus 5.9% average in other years). The absence of dinoflagellates, potentially including H. akashiwo predators , plus suitable habitat (13–14 daylight hours, temperatures 17–21˚C, nitrate concentrations 17–24 µmol L −1 , neap tides) likely provided opportunity for H. akashiwo to proliferate from 0.03% to 48% of protists between July 20 and August 25. As the bloom collapsed, the genus Gyrodinium (dinoflagellate predator of H. akashiwo ) increased from 3.0% to 52% of protists between August 25 and August 31, likely exerting grazing pressure. Results show that antecedent protist community dynamics play important roles in shaping HABs, and interactions between biotic and abiotic factors govern the development of blooms.

California↗
USGS2026

Assessing the status and drivers of phytoplankton blooms along the riverine to freshwater-tidal continuum in a modified delta

Shifts in phytoplankton communities, from beneficial taxa that fuel food webs to harmful taxa that degrade water quality, are often linked to anthropogenic modifications to estuaries. We analyzed monitoring data from 2000 to 2023 in the heavily modified southern, landward portion of the Sacramento-San Joaquin Delta (California, USA) to determine the status and drivers of phytoplankton abundance and community composition along the riverine to freshwater tidal transition. Diatoms and green algae dominated the phytoplankton community, especially when chlorophyll a (chl- a ) concentrations exceeded 16 µg L − 1 . Common riverine diatoms (e.g., Cyclotella and Aulacoseira ) dominated upstream riverine stations, while taxa associated with tidally influenced conditions (e.g., colonial cyanobacteria, cryptophytes) were more prevalent in western, freshwater tidal stations. The potentially toxigenic cyanobacterium, Microcystis , was present each summer, but was not associated with elevated chl- a or cyanotoxins (microcystins were detected in 12% of samples with a maximum concentration of 3.9 µg L − 1 ). A Bayesian ordinal regression showed that mean prior week water speeds below 0.18 m s − 1 and water temperatures above 22 ˚C were associated with the presence of Microcystis. Random forest modeling to assess factors associated with phytoplankton blooms (chl- a > 16 µg L − 1 ) found that mean prior week turbidity, inflows from the San Joaquin River, region, and mean prior week water temperature were important drivers of blooms. These modeling results emphasize the importance of hydrodynamics in controlling phytoplankton dynamics in lowland rivers and tidal deltas, offering insights for how anthropogenic impacts on flow regimes may affect the base of estuarine food webs.

California↗
USGS2004

Spatial and temporal variability of suspended-sediment concentrations in a shallow estuarine environment

Shallow subembayments respond differently than deep channels to physical forces acting in estuaries. The U.S. Geological Survey measured suspended-sediment concentrations at five locations in Honker Bay, a shallow subembayment of San Francisco Bay, and the adjacent channel to investigate the spatial and temporal differences between deep and shallow estuarine environments. During the first freshwater pulse of the wet season, the channel tended to transport suspended sediments through the system, whereas the shallow area acted as off-channel storage where deposition would likely occur. Following the freshwater pulse, suspended-sediment concentrations were greater in Honker Bay than in the adjacent deep channel, due to the larger supply of erodible sediment on the bed. However, the tidal variability of suspended-sediment concentrations in both Honker Bay and in the adjacent channel was greater after the freshwater pulse than before. During wind events, suspended-sediment concentrations in the channel were not affected; however, wind played a crucial role in the resuspension of sediments in the shallows. Despite wind-wave sediment resuspension in Honker Bay, tidally averaged suspended-sediment flux was controlled by the flood-dominated currents.

California↗
USGS2007

Effects of flow diversions on water and habitat quality: Examples from California's highly manipulated Sacramento–San Joaquin Delta

We use selected monitoring data to illustrate how localized water diversions from seasonal barriers, gate operations, and export pumps alter water quality across the Sacramento-San Joaquin Delta (California). Dynamics of water-quality variability are complex because the Delta is a mixing zone of water from the Sacramento and San Joaquin Rivers, agricultural return water, and the San Francisco Estuary. Each source has distinct water-quality characteristics, and the contribution of each source varies in response to natural hydrologic variability and water diversions. We use simulations with a tidal hydrodynamic model to reveal how three diversion events, as case studies, influence water quality through their alteration of Delta-wide water circulation patterns and flushing time. Reduction of export pumping decreases the proportion of Sacramento- to San Joaquin-derived fresh water in the central Delta, leading to rapid increases in salinity. Delta Cross Channel gate operations control salinity in the western Delta and alter the freshwater source distribution in the central Delta. Removal of the head of Old River barrier, in autumn, increases the flushing time of the Stockton Ship Channel from days to weeks, contributing to a depletion of dissolved oxygen. Each shift in water quality has implications either for habitat quality or municipal drinking water, illustrating the importance of a systems view to anticipate the suite of changes induced by flow manipulations, and to minimize the conflicts inherent in allocations of scarce resources to meet multiple objectives.

California↗
USGS2011

Avian communities in tidal salt marshes of San Francisco Bay: A review of functional groups by foraging guild and habitat association

The San Francisco Bay estuary is highly urbanized, but it supports the largest remaining extent of tidal salt marshes on the west coast of North America as well as a diverse native bird community. San Francisco Bay tidal marshes are occupied by more than 113 bird species that represent 31 families, including five subspecies from three families that we denote as tidal-marsh obligates. To better identify the niche of bird species in tidal marshes, we present a review of functional groups based on foraging guilds and habitat associations. Foraging guilds describe the method by which species obtain food from tidal marshes, while habitat associations describe broad areas within the marsh that have similar environmental conditions. For example, the ubiquitous song sparrows (Alameda Melospiza melodia pusillula , Suisun M. m. maxillaris , and San Pablo M. m. samuelis ) are surface-feeding generalists that consume prey from vegetation and the ground, and they are found across the entire marsh plain into the upland–marsh transition. In contrast, surface-feeding California black rails ( Laterallus jamaicensis coturniculus ) are cryptic, and generally restricted in their distribution to the mid- and high-marsh plain. Although in the same family, the endangered California clapper rail ( Rallus longirostris obsoletus ) has become highly specialized, foraging primarily on benthic fauna within marsh channels when they are exposed at low tide. Shorebirds such as the black-necked stilt ( Himantopus mexicanus ) typically probe in mud flats to consume macroinvertebrate prey, and are generally restricted to foraging on salt pans within the marsh plain, in ponds, or on mud flats during transitional stages of marsh evolution. The abundance and distribution of birds varies widely with changing water depths and vegetation colonization during different stages of restoration. Thus, tidal-marsh birds represent a rich and diverse community in bay marshes, with niches that may be distinguished by the food resources they consume and the habitats that they occupy along the tidal gradient.

California↗
USGS2016

Food webs of the Delta, Suisun Bay and Suisun Marsh: an update on current understanding and possibilities for management

This paper reviews and highlights recent research findings on foodweb processes since an earlier review by Kimmerer et al. (2008). We conduct this review within a conceptual framework of the Delta-Suisun food web, which includes both temporal and spatial components. The temporal component is based on knowledge that the landscape has changed markedly from historical conditions. The spatial component of our framework acknowledges that the food web is not spatially static; it varies regionally and across habitat types within regions. The review highlights the idea of a changing baseline with respect to foodweb function. New research also indicates that interactions between habitat-specific food webs vary across the current landscape. For example, based on early work in the South Delta, the food web associated with submerged aquatic vegetation was thought to provide little support to species of concern; however, data from other regions of the estuary suggest that this conceptual model may not apply across the entire region. Habitat restoration has been proposed as a method of re-establishing historic foodweb processes to support species of concern. Benefits are likely for species that directly access such restored habitats, but are less clear for pelagic species. Several topics require attention to further improve the knowledge of food webs needed to support effective management, including: 1) synthesis of factors responsible for low pelagic biomass; 2) monitoring and research on effects of harmful algal blooms; 3) broadening the scope of long-term monitoring; 4) determining benefits of tidal wetland restoration to species of concern, including evaluations of interactions of habitat-specific food webs; and 5) interdisciplinary analysis and synthesis. The only certainty is that food webs will continue to change in response to the changes in the physical environment and new species invasions.

Californina↗
USGS2018

Toward salt marsh harvest mouse recovery: A review

The salt marsh harvest mouse (SMHM, Reithrodontomys raviventris ) is an endangered species, endemic to the San Francisco Estuary. Despite being protected for almost half a century and being included in a large number of recovery, restoration, and management plans, significant data gaps hinder conservation and management of the species, a challenge further complicated by developing threats such as climate change. In this review, we present the current state of knowledge; highlight research gaps on habitat requirements and distribution, taxonomic status and genetic structure, physiology, reproduction and demographics, population dynamics, and behavior and community interactions; and present an overview of threats to the species. Our review indicates that substantial data gaps exist; although some aspects of SMHM ecology, such as habitat use, have been addressed extensively, others, such as the effects of environmental contamination, are largely unaddressed. We suggest that conservation and restoration-planning processes consider experimental approaches within restoration designs to address these deficiencies. Continued investment in basic and applied SMHM ecology to collect baseline and long-term data will also be beneficial. Additionally, further coordination among managers and researchers can facilitate more effective responses to uncertainties and emerging threats, especially climate change, which threatens the SMHM and its habitat throughout its range.

San Francisco Estuary and Watershed Science↗
USGS2018

Hourly analyses of the large storms and atmospheric rivers that provide most of California's precipitation in only 10 to 100 hours per year

California is regularly impacted by floods and droughts, primarily as a result of too many or too few atmospheric rivers (ARs). This study analyzes a two-decade-long hourly precipitation dataset from 176 California weather stations and a 3-hourly AR chronology to report variations in rainfall events across California and their association with ARs. On average, 10-40 and 60-120 hours of rainfall in southern and northern California, respectively, are responsible for more than half of annual rainfall accumulations. Approximately 10-30% of annual precipitation at locations across the state is from only one large storm. On average, northern California receives 25-45 rainfall events annually (40-50% of which are AR-related). These events typically have longer durations and higher event-precipitation totals than those in southern California. Northern California also receives more AR landfalls with longer durations and stronger Integrated Vapor Transport (IVT). On average, ARs contribute 79%, 76%, and 68% of extreme-rainfall accumulations (i.e., top 5% events annually) in the north coast, northern Sierra, and Transverse Ranges of southern California, respectively. The San Francisco Bay Area terrain gap in the California Coast Range allows more AR water vapor to reach inland over the Delta and Sacramento Valley, and thus, influences precipitation in the Delta’s catchment. This is particularly important for extreme precipitation in the northern Sierra Nevada, including river basins above Oroville Dam and Shasta Dam. This study highlights differences between rainfall and AR characteristics in coastal versus inland northern California, differences that largely determine the regional geography of flood risks and water-reliability. These analyses support water resource, flood, levee, wetland, and ecosystem management within the catchment of the San Francisco estuary system by describing regional characteristics of ARs and their influence on rainfall on an hourly timescale.

California↗
USGS2021

Concentrations, loads, and associated trends of nutrients entering the Sacramento-San Joaquin Delta, California

Statistical modeling of water-quality data collected at the Sacramento River at Freeport and San Joaquin River near Vernalis, California, USA, was used to examine trends in concentrations and loads of various forms of dissolved and particulate nitrogen and phosphorus that entered the Sacramento–San Joaquin River Delta (Delta) from upstream sources between 1970 and 2019. Ammonium concentrations and loads decreased at the Sacramento River site from the mid-1970s through 1990 because of the consolidation of wastewater treatment and continuously reduced from the mid-1970s to 2019 at the San Joaquin River site. Current ammonium concentrations are mostly below 4 µM (0.056 mg N L –1 ) at both sites, a concentration above which reductions in phytoplankton productivity or changes in algal species composition may occur. The Sacramento River at Freeport site is located upstream of the Sacramento Regional County Sanitation District’s treatment facility’s discharge point; nutrient water quality there is representative of upstream sources. Inorganic nitrogen (nitrate plus ammonium) concentrations and loading differed at both sites. At the Sacramento River location, concentrations decrease in the summer agricultural season, reducing the molar ratios of nitrogen to phosphorus. In contrast, inorganic nitrogen concentrations increase in the San Joaquin River during the agricultural season as a result of irrigation runoff, increasing the molar ratio of nitrogen to phosphorus. This increase suggests a possible nitrogen limitation in the northern Delta and a phosphorus limitation in the southern Delta, as indicated by the molar ratios of bioavailable nitrogen to bioavailable phosphorus. Planned upgrades to the Sacramento Regional Wastewater Treatment Plant (SRWTP) will reduce inorganic nitrogen inputs to the northern Delta. Consequently, the supply of bioavailable nitrogen throughout the upper estuary should diminish. Source modeling of nitrogen and phosphorus identifies agriculture, atmospheric deposition, and wastewater effluent as sources of total nitrogen in the Central Valley. In contrast, geologic sources, agriculture, and wastewater discharge are the primary sources of phosphorus.

California↗
USGS2023

A simple approach to modeling light attenuation in the Sacramento-San Joaquin Delta using commonly available data

The diffuse attenuation coefficient of photosynthetically active radiation (KdPAR) is commonly used to predict light attenuation in aquatic productivity models, but obtaining measurements of PAR to compute KdPAR is difficult. In situ calculations of KdPAR require multiple measurements of PAR through the water column, and these measurements are infeasible for real-time recording. Instead, predictive models using surface-water measurements may be used. Traditional KdPAR models are based on open-ocean habitats and rely on chlorophyll—as a proxy measurement for phytoplankton abundance—as the main predictive parameter. However, elevated suspended sediments and dissolved organic materials may also affect KdPAR values of inland water bodies and estuaries. In this study, we leverage KdPAR calculations derived from in situ light measurements collected along with surface-water-quality parameters across the Sacramento-San Joaquin River Delta in California, USA (the Delta). Sampling occurred between January of 2013 and May of 2014. We also explored regional and seasonal effects, but these did not clearly affect the model. Ultimately, the best-performing model included surface-level turbidity only (R2 = 0.91). The simplicity of the model facilitates use of KdPAR estimates for a variety of purposes throughout the Delta, including euphotic depth calculations, and as inputs to primary-productivity and habitat-suitability models. We demonstrate the model’s usability with two open-sources data sets (one spatially dense, and one temporally dense), and estimate KdPAR, euphotic depth, and primary productivity within the Delta. We provide calculations for each estimation, allowing users to easily adopt these models and apply them to their own data or with open-sourced data, which are abundant.

California↗
USGS2024

Delta blue(green)s: The effect of drought and drought-management actions on microcystis in the Sacramento–San Joaquin Delta

Cyanobacterial phytoplankton blooms are more prevalent in the freshwater Sacramento-San Joaquin Delta (Delta) since the late 1990s, including blooms driven by overgrowths of potentially toxigenic organisms of the genus Microcystis . Data from 2014 to 2021 were used to show how flow dynamics, water temperature, and water clarity drive occurrence of Microcystis . We used a Microcystis bloom in the central Delta from 2021 as a case study for how novel monitoring tools can track blooms in real-time and be used post hoc to evaluate the effects of management actions. Microcystis was detected throughout the Delta in all but the highest-flow years, and bloom incidence and severity increased during drier years. In the South Delta, Franks Tract, lower San Joaquin River, and Old River regions, where blooms are most prevalent, higher water temperatures and clarities combined with lower exports from state and federal water projects were the best explanatory factors for the occurrence of Microcystis blooms. Nutrient concentrations were lower in summer than in winter, but only became limiting at high phytoplankton concentrations. We used satellite data and in situ continuous monitoring of flow, phytoplankton communities, and water quality to track hydro-biogeochemical conditions during the 2021 case study Microcystis bloom in the Central Delta. We did not find evidence that changes to Delta outflow regulatory standards contributed to this bloom, but changes in flow caused by a salinity barrier placed in west False River may have exacerbated the bloom. The frequency and severity of droughts are expected to increase in the future as a result of climate change, and our study demonstrates how continued monitoring of cyanotoxins, water quality, and phytoplankton communities could help improve management of cyanobacterial blooms in the Delta and other estuaries.

California↗
USGS2025

Effects of flow on pesticides in water and zooplankton in the northern Sacramento-San Joaquin Delta

Zooplankton are a key food source for juvenile fishes in estuaries worldwide, including California’s Sacramento–San Joaquin Delta (hereafter Delta); both zooplankton quality and quantity are critical to ecosystem health. Zooplankton may be affected by pesticides in water and the food web, and the Delta is known to contain complex pesticide mixtures. In this study, we evaluated pesticide concentrations in water and zooplankton in the northern Delta during (1) the summer–fall of 2017, 2018, and 2019, which included periods of augmented pulse flows from agriculture tailwater, and (2) across a full seasonal cycle from May 2019 to March 2020. We quantified changes in pesticide concentration in response to environmental factors. We found that zooplankton showed more frequent detections of hydrophobic pesticides compared to more frequent detections of hydrophilic compounds in water. Pesticide concentrations were influenced by flow, pesticide application, and season, but the effects of these environmental factors differed by habitat (Sacramento River or Yolo Bypass Toe Drain). Pesticides in water responded similarly to environmental factors in the Sacramento River and Yolo Bypass, whereas pesticides in zooplankton responded differently. In water, we found more detections and higher concentrations at higher flows in the Yolo Bypass and Sacramento River, but responses to pesticide application varied by habitat. Alternatively, pesticide concentrations in zooplankton increased in the Yolo Bypass with increasing flow (correlated with flow pulses) and changed seasonally; whereas, pesticide concentrations in zooplankton in the Sacramento River decreased at higher flows, and decreased with or did not respond to higher pesticide application in the watershed. Our study suggests that augmented flows—particularly those using agricultural tailwater—may have unintended negative ecological effects that could partially offset benefits to the food web and fishes in the northern Delta, underscoring the complex interplay among factors that drive increased pesticide exposure.

California↗
USGS1978

Organochlorine residues, eggshell thickness, and nest success in barn owls from the Chesapeake Bay

Eggs of barn owls ( Tyto alba ) were collected from 18 nests in offshore duck blinds on the Maryland side of the lower Potomac River estuary in 1972 and 1973 and analyzed for organochlorine residues. DDE was found in 100% of the clutches, PCBs in 89%, and dieldrin in 78%. Eggshell thickness was inversely correlated with concentrations of DDE, DDD, and dieldrin residues. Six of the 18 clutches had mean DDE residues above 5 ppm, and eggshell thickness in these six clutches was significantly less (P<0.001) than in the other 12 clutches. The owls produced 1.7 young per active nest in 1973. This rate is slightly below the reproductive rate needed to maintain a stable population. An estimated 15% of the population carried concentrations of organochlorine residues that may have been detrimental to their reproduction. Passerine birds, taken extensively as food by a small proportion of the population, are believed to have been the source of elevated concentrations of organochlorines in these barn owls.

Maryland, Virginia↗
USGS1986

Chemical variability in the Sacramento River and in Northern San Francisco Bay

Specific conductance and concentrations of alkalinity, dissolved silica, nitrate, and ammonium were measured daily in the Sacramento River flow to northern San Francisco Bay during the rainfall seasons of 1983 and 1984 (high flow) and during late summer and early fall of 1984 (low flow). Flow and concentrations of chemical species varied in response to storm events during high flow, but flow was more variable than concentrations of chemical species. Runoff from agriculturally developed areas appeared to increase specific conductance and concentrations of alkalinity during high flow. During low flow, inputs of agricultural tailwaters caused variations in concentrations of alkalinity and dissolved silica. Dilution of municipal waste by river flow caused variability in concentrations of ammonium during both high flow and low flow. Distributions of alkalinity, dissolved silica, nitrate, and ammonium were measured in northern San Francisco Bay during late summer and fall of 1984. Changes in distributions of alkalinity in the estuary were caused by variations in alkalinity in the Sacramento River. Changes in distributions of dissolved silica, nitrate, and ammonium appeared to be primarily related to variations in supply by the river and removal by phytoplankton. Effects of removal by phytoplankton were large for ammonium and dissolved silica, but appeared relatively small for nitrate.

California↗
USGS1996

Dependence of waterbirds and shorebirds on shallow-water habitats in the Mid-Atlantic coastal region: An ecological profile and management recommendations

Waterbirds (waterfowl, colonially nesting wading and seabirds, ospreys [ Pandion haliaetus ], and bald eagles [ Haliaeetus leucocephalus ]) and shorebirds (sandpipers, plovers, and relatives) may constitute a large fraction of the toplevel carnivore trophic component in many shallow-water areas of the mid-Atlantic region. The large biomass of many species (>1 kg body mass for the two raptors and some waterfowl) and enormous populations (e.g.,>1 million shorebirds in late May in parts of Delaware Bay) reveal the importance of waterbirds as consumers and as linkages in nutrient flux in many shallow-water habitats. Salt and brackish marsh shallow-water habitats, including marsh pannes and tidal pools and creeks as well as constructed impoundments, are used intensively during most months of the year; in fall and winter, mostly by dabbling ducks, in spring and summer by migrant shorebirds and breeding colonial wading birds and seabirds. In adjacent estuaries, the intertidal flats and littoral zones of shallow embayments are heavily used by shorebirds, raptors, and colonial waterbirds in the May to September periods, with use by duck and geese heaviest from October to March. With the regional degradation of estuarine habitats and population declines of many species of waterbirds in the past 20 yr, some management recommedations relevant to shallow waters include: better protection, enhancement, and creation of small bay islands (small and isolated to preclude most mammalian predators) for nesting and brooding birds, especially colonial species; establishment of sanctuaries from human disturbance (e.g., boating, hunting) both in open water (waterfowl) and on land; better allocation of sandy dredged materials to augment islands or stabilize eroding islands; improvement in water management of existing impoundments to ensure good feeding, resting, and nesting opportunities for all the waterbirds; support for policies to preclude point and nonpoint source runoff of chemicals and nutrients to enable submerged aquatic vegetation to recover in many coastal bays; and improvement in environmental education concerning disturbance to wildlife for boaters and recreationists using the coastal zone.

Delaware, Maryland, New Jersey, North Carolina, Vi↗
USGS1996

A metabolism-based trophic index for comparing the ecological values of shallow-water sediment habitats

We determined fluxes of oxygen and nutrients between water and sediments at 21 sites primarily in Virginia and North Carolina estuaries, over the past 15 yr. These sites represented broad ranges in salinity, tidal amplitude, hydrology, nutrient availability, turbidity, light availability, depth, sediment grain size, and anthropogenic disturbance. In general, we found that heterotrophically dominated sediments had the potential to degrade water quality, whereas photoautotrophy in the sediments ameliorated this impact. We propose a benthic trophic state index as a management tool to make general assessments of the degree to which sediments support ecological processes related to photoautotrophy. The index can be based on simple measurements of metabolic parameters. We also evaluated the relative significance of variability in the index across a number of spatial and temporal scales. Reduced photoautotrophy and/or enhanced heterotrophy tended to be associated with finer-grained, organic-rich sediments. This sediment type was common in oligohaline areas at water depths exceeding 2 m. Temporally, autotrophy declined from winter to spring particularly at sandy sites, while interannual variability was more pronounced for mud sites.

North Carolina, Virginia↗
USGS1995

Growth and mortaility rates of larval American shad, Alosa sapidissima, at different salinities

The tolerance of post yolk-sac American shad Alosa sapidissima larvae to salinities typically seen in estuaries was assessed experimentally. Sixteen-day-old Hudson River (experiment I) and 35-d-old Delaware River (experiment II) larvae were held for 8 d and 9 d respectively in low (0–1‰), medium (9–11‰), and highly (19–20‰) brackish water, and mortality and growth rates were measured. Growth rates did not vary significantly among salinity treatments. Mortality in experiment I did not vary significantly among salinity treatments however, in experiment II, mortality was zero at 10‰ but higher and statistically indistinguishable between 0‰ and 20‰ In experiment II relative condition increased with salinity. These results imply that estuarine salinities neither depress growth rates nor elevate mortality rates of larval American shad when compared with freshwater conditions. We conclude that ecological factors other than the physiological effects of salinity have played more important roles in the evolution of the upriver spawning and nursery preference shown by this species.

Delaware, New Jersey, New York, Philadelphia↗