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At least 1,117 records · Page 62Linked to original sources

USGS2008

Geometry of the neoproterozoic and paleozoic rift margin of western Laurentia: Implications for mineral deposit settings

The U.S. and Canadian Cordilleran miogeocline evolved during several phases of Cryogenian-Devonian intracontinental rifting that formed the western mangin of Laurentia. Recent field and dating studies across central Idaho and northern Nevada result in identification of two segments of the rift margin. Resulting interpretations of rift geometry in the northern U.S. Cordillera are compatible with interpretations of northwest- striking asymmetric extensional segments subdivided by northeast-striking transform and transfer segments. The new interpretation permits integration of miogeoclinal segments along the length of the western North American Cordillera. For the U.S. Cordillera, miogeoclinal segments include the St. Mary-Moyie transform, eastern Washington- eastern Idaho upper-plate margin, Snake River transfer, Nevada-Utah lower-plate margin, and Mina transfer. The rift is orthogonal to most older basement domains, but the location of the transform-transfer zones suggests control of them by basement domain boundaries. The zigzag geometry of reentrants and promontories along the rift is paralleled by salients and recesses in younger thrust belts and by segmentation of younger extensional domains. Likewise, transform transfer zones localized subsequent transcurrent structures and igneous activity. Sediment-hosted mineral deposits trace the same zigzag geometry along the margin. Sedimentary exhalative (sedex) Zn-Pb-Ag ??Au and barite mineral deposits formed in continental-slope rocks during the Late Devonian-Mississippian and to a lesser degree, during the Cambrian-Early Ordovician. Such deposits formed during episodes of renewed extension along miogeoclinal segments. Carbonate-hosted Mississippi Valley- type (MVT) Zn-Pb deposits formed in structurally reactivated continental shelf rocks during the Late Devonian-Mississippian and Mesozoic due to reactivation of preexisting structures. The distribution and abundance of sedex and MVT deposits are controlled by the polarity and kinematics of the rift segment. Locally, discrete mineral belts parallel secondary structures such as rotated crustal blocks at depth that produced sedimentary subbasins and conduits for hydrothermal fluids. Where the miogeocline was overprinted by Mesozoic and Cenozoic deformation and magmatism, igneous rock-related mineral deposits are common. ??2008 Geological Society of America.

Geosphere↗

USGS2013

Implications of the miocene(?) crooked ridge river of northern arizona for the evolution of the colorado river and grand canyon

The southwesterly course of the probably pre–early Miocene and possibly Oligocene Crooked Ridge River can be traced continuously for 48 km and discontinuously for 91 km in northern Arizona (United States). The course is visible today in inverted relief. Pebbles in the river gravel came from at least as far northeast as the San Juan Mountains (Colorado). The river valley was carved out of easily eroded Jurassic and Cretaceous rocks whose debris overloaded the river with abundant detritus, probably steepening the gradient. After the river became inactive, the regional drainage network was rearranged three times, and the nearby Four Corners region was lowered 1–2 km by erosion. The river provides constraints on the early evolution of the Colorado River and Grand Canyon. Continuation of this river into lakes in Arizona or Utah is unlikely, as is integration through Grand Canyon by lake spillover. The downstream course of the river probably was across the Kaibab arch in a valley roughly coincident with the present eastern Grand Canyon. Beyond this point, the course may have continued to the drainage basin of the Sacramento River, or to the proto–Snake River drainage. Crooked Ridge River was beheaded by the developing San Juan River, which pirated its waters and probably was tributary to a proto–Colorado River, flowing roughly along its present course west of the Monument upwarp.

Geosphere↗

USGS2021

The case for a long-lived and robust Yellowstone hotspot

The Yellowstone hotspot is recognized as a whole-mantle plume with a history that extends to at least 56 Ma, as recorded by offshore volcanism on the Siletzia oceanic plateau. Siletzia accreted onto the North American plate at 51–49 Ma, followed by repositioning of the Farallon trench west of Siletzia from 48 to 45 Ma. North America overrode the hotspot, and it transitioned from the Farallon plate to the North American plate from 42 to 34 Ma. Since that time, it has been genetically associated with a series of aligned volcanic provinces associated with age-progressive events that include Oligocene high-K calc-alkaline volcanism in the Oregon backarc region with coeval adakite volcanism localized above the hot plume center; mid-Miocene bimodal and flood-basalt volcanism of the main-phase Columbia River Basalt Group; coeval collapse of the Nevadaplano associated with onset of Basin and Range extension and minor magmatism; and late Miocene to recent bimodal volcanism along two coeval but antithetical rhyolite migration trends—the Yellowstone–Snake River Plain hotspot track to the ENE and the Oregon High Lava Plains to the WNW.

Yellowstone hotspot↗

USGS2023

Redd superimposition mediates the accuracy, precision, and significance of redd counts for cutthroat trout

Redd counts are commonly applied to estimate spawning population size for salmonids and allow for broad spatial and temporal coverage in monitoring efforts. However, the utility of redd counts may be compromised by observation error, particularly with respect to superimposition, where later arriving spawners construct redds overlapping existing redds. Here, we provide a mechanistic evaluation of the effects of superimposition on the error structure and biological significance of redd count data for Yellowstone cutthroat trout ( Oncorhynchus clarkii bouvieri ) spawning within tributaries to the Snake River, Wyoming. We used a Bayesian framework to parse observation error into distinct components and found low detection of redd clusters (i.e., areas of superimposition) was offset by overestimates of the number of redds per cluster, such that observed counts accurately reflected census redd abundance. However, a saturating relationship between redd counts and spawner abundance indicated that counts is best interpreted as effective reproductive effort rather than spawner abundance. Our results provide a mechanistic understanding of redd count data that can be used to assess their application and interpretation for monitoring.

Wyoming↗

USGS2024

Cycles in adult steelhead length suggest interspecific competition in the North Pacific Ocean

Anadromous fishes rely on abundant prey in the ocean to grow large quickly, but prey limitation leads to interspecific competition. When species interactions are difficult to observe, growth can be studied to detect otherwise cryptic signals of competition. We describe a previously undocumented two-year cycle in the lengths of adult natural-origin steelhead ( Oncorhynchus mykiss ) returning to spawn in the Snake River Basin. Returning steelhead were 38 mm shorter on odd return years, not accounting for sex, stock, and years of ocean residence. The well-known cycle in abundance of Pink Salmon from eastern Kamchatka and North America had statistically significant negative effects on returning steelhead lengths that depended on sex and the number of years of ocean residence. These results suggest that competition for limited resources occurs well after initial ocean entry and that interactions during later stages of ocean residence can be influential. Interspecific competition has implications for future returns of steelhead from the ocean, especially as metabolic demands for steelhead increase as the ocean warms.

North Pacific Ocean↗

USGS2001

Effective population size and genetic structure of a Piute ground squirrel (Spermophilus mollis) population

Piute ground squirrels ( Spermophilus mollis ) are distributed continuously in habitat dominated by native shrubs and perennial grasses in the Snake River Birds of Prey National Conservation Area in Idaho, U.S.A. This habitat is being fragmented and replaced by exotic annual plants, changing it to a wildfire-dominated system that provides poor habitat for ground squirrels. To assess potential effects of this fragmentation on ground squirrel populations, we combined an estimate of effective population size ( N e ) based upon a demographic study with a population genetic analysis. The study area included three subpopulations separated from each other by 813 km. The ratio of effective population size to census number ( N e / N ) was 0.57. Combining N e / N with dispersal distances from a radio-tracking study, we calculated that neighborhood size was 62.2 ha, which included between 204 and 480 individuals. Our population genetic analysis (based on randomly amplified polymorphic DNA (RAPD) and microsatellite markers) showed relatively low levels of genetic differentiation (Q populations 0.070.10) between subpopulations and no inbreeding within subpopulations ( f = 0.0003). These estimates of population subdivision translate into an effective migration rate ( N e m ) of 2.33.3 per year, which represents a high level of gene flow. Invasion by exotics will reduce the overall productivity of the habitat, and will lead to isolation among subpopulations if favorable habitat patches become isolated.

Canadian Journal of Zoology↗

USGS2012

Relationships between yolk androgens and nest density, laying date, and laying order in Western Burrowing Owls (Athene cunicularia hypugaea)

Increases in yolk androgens within and among avian clutches have been correlated with decreased incubation time, increased aggression within a nest, increased begging behaviour, decreased immune response, and decreased life span. Although the mechanisms that lead to variability in yolk androgens within and between clutches are not completely known, yolk androgens can be a function of both social and environmental conditions. We were interested in if and how nesting density, laying date, and laying order influenced yolk androgens in Western Burrowing Owls (Athene cunicularia hypugaea (Bonaparte, 1825)) in which nest density varies considerably. In 2006 and 2007, we used radioimmunoassay to quantify the concentrations of testosterone, 5a-dihydrotestosterone, and androstenedione in the egg yolks from one early and one latelaid egg in 47 nests of Burrowing Owls located in the Morley Nelson Snake River Birds of Prey National Conservation Area in southern Idaho. Nesting density had no detectable effect on yolk androgens. Yolk androgens varied temporally and peaked in the middle of the laying season while being low before and after this time period. Within nests, late-laid eggs had higher testosterone and dihydrotestosterone than early-laid eggs; adrostendione exhibited a similar pattern in one but not both years of our study. It is possible that the seasonal pattern in yolk androgens that we observed is related to aspects of mate quality for females or declining chances of fledging success for later nesting females, whereas rises in egg androgens between early and late eggs within clutches could reflect a mechanism to assist nestlings from late-laid eggs that hatch one to several days after their siblings to better compete for resources within the nest or promote survival in the presence of larger siblings.

Canadian Journal of Zoology↗

USGS1995

Evidence from tooth surface morphology for a posterior maxillary origin of the proteroglyph fang

Although the front-fanged venom delivery system of the Elapidae is believed to be derived from an aglyphous or opisthoglyphous colubroid ancestor, opinion is divided as to the end of the maxilla on which the proteroglyph fang originated. This study was undertaken to determine whether the evolutionary precursor of the proteroglyph fang was (a) a grooved posterior fang which migrated anteriorly, or (b) an enlarged anterior tooth which secondarily developed a groove for the conduction of venom. The surface morphology of the maxillary teeth of colubrid genera was examined using scanning electron microscopy. Ridges present on the lingual and labial surfaces of anterior maxillary teeth and on the anterior and posterior surfaces of posterior maxillary teeth were identified as morphological markers of potential value in distinguishing the anterior and posterior maxillary teeth of colubrid snakes, and in determining the origin of the proteroglyph fang. Patterns of ridges on the surfaces of elapid fangs examined were found to be consistent with the hypothesis that the evolutionary precursor of the proteroglyph fang was an opisthoglyph fang which migrated anteriorly.

Amphibia-Reptilia↗

USGS2009

The results of nocturnal visual surveys are influenced by lamp properties

We conducted standardized visual searches at night for brown treesnakes (Boiga irregularis) and geckos, where we alternated between spotlight and floodlight lamps. Floodlights rendered us 25% more snakes and 71% more geckos than did spotlights. We show data on searcher variability and discuss what might affect the relative benefit of different lamp types. ?? 2009 Brill Academic Publishers.

Applied Herpetology↗

USGS2009

An evaluation of the genus Kincaidiana Altman, 1936, with the designation of Altmanella n. gen. (Annelida, Clitellata, Lumbriculidae)

A review of morphological characters for the western Nearctic genus Kincaidiana indicated that the two described species should be assigned to separate genera. Kincaidiana freidris Cook was transferred to a new genus, Altmanella. New material resembling A. freidris was obtained from many sites throughout western North America. Morphology of the male reproductive structures varied among populations, and the most distinctive morphological differences were accounted for by splitting the taxon into two species, which roughly corresponded to large scale regional patterns. Typical A. freidris occurred in several Pacific Coast drainages. Altmanella idahoensis n. sp., mostly associated with the Snake River drainage, was distinguished from A. freidris by shorter and less muscular atria and penial structures. A second new lumbriculid species with the same basic arrangement of reproductive organs was collected in southeastern North America, and was provisionally assigned to Altmanella. However, in contrast to the petiolate atria and large penial structures of A. freidris and A. idahoensis, Altmanella lenati n. sp. has tubular atria and simple male porophores.

Zootaxa↗

USGS2016

Identification of the major capsid protein of erythrocytic necrosis virus (ENV) and development of quantitative real-time PCR assays for quantification of ENV DNA

Viral erythrocytic necrosis (VEN) is a disease of marine and anadromous fish that is caused by the erythrocytic necrosis virus (ENV), which was recently identified as a novel member of family Iridoviridae by next-generation sequencing. Phylogenetic analysis of the ENV DNA polymerase grouped ENV with other erythrocytic iridoviruses from snakes and lizards. In the present study, we identified the gene encoding the ENV major capsid protein (MCP) and developed a quantitative real-time PCR (qPCR) assay targeting this gene. Phylogenetic analysis of the MCP gene sequence supported the conclusion that ENV does not group with any of the currently described iridovirus genera. Because there is no information regarding genetic variation of the MCP gene across the reported host and geographic range for ENV, we also developed a second qPCR assay for a more conserved ATPase-like gene region. The MCP and ATPase qPCR assays demonstrated good analytical and diagnostic sensitivity and specificity based on samples from laboratory challenges of Pacific herring Clupea pallasii . The qPCR assays had similar diagnostic sensitivity and specificity as light microscopy of stained blood smears for the presence of intraerythrocytic inclusion bodies. However, the qPCR assays may detect viral DNA early in infection prior to the formation of inclusion bodies. Both qPCR assays appear suitable for viral surveillance or as a confirmatory test for ENV in Pacific herring from the Salish Sea.

Journal of Veterinary Diagnostic Investigation↗

USGS2018

New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus)

Background Management requires a robust understanding of between- and within-species genetic variability, however such data are still lacking in many species. For example, although multiple population genetics studies of the peregrine falcon ( Falco peregrinus ) have been conducted, no similar studies have been done of the closely-related prairie falcon ( F. mexicanus ) and it is unclear how much genetic variation and population structure exists across the species’ range. Furthermore, the phylogenetic relationship of F. mexicanus relative to other falcon species is contested. We utilized a genomics approach (i.e., genome sequencing and assembly followed by single nucleotide polymorphism genotyping) to rapidly address these gaps in knowledge. Results We sequenced the genome of a single female prairie falcon and generated a 1.17 Gb (gigabases) draft genome assembly. We generated maximum likelihood phylogenetic trees using complete mitochondrial genomes as well as nuclear protein-coding genes. This process provided evidence that F. mexicanus is an outgroup to the clade that includes the peregrine falcon and members of the subgenus Hierofalco. We annotated > 16,000 genes and almost 600,000 high-quality single nucleotide polymorphisms (SNPs) in the nuclear genome, providing the raw material for a SNP assay design featuring > 140 gene-associated markers and a molecular-sexing marker. We subsequently genotyped ~ 100 individuals from California (including the San Francisco East Bay Area, Pinnacles National Park and the Mojave Desert) and Idaho (Snake River Birds of Prey National Conservation Area). We tested for population structure and found evidence that individuals sampled in California and Idaho represent a single panmictic population. Conclusions Our study illustrates how genomic resources can rapidly shed light on genetic variability in understudied species and resolve phylogenetic relationships. Furthermore, we found evidence of a single, randomly mating population of prairie falcons across our sampling locations. Prairie falcons are highly mobile and relatively rare long-distance dispersal events may promote gene flow throughout the range. As such, California’s prairie falcons might be managed as a single population, indicating that management actions undertaken to benefit the species at the local level have the potential to influence the species as a whole.

BMC Genomics↗

USGS2015

Home range, habitat use, and movement patterns of non-native Burmese pythons in Everglades National Park, Florida, USA

Background Studies on the spatial ecology of invasive species provide critical information for conservation managers such as habitat preferences and identification of native species at risk of predation. To understand the spatial ecology of non-native Burmese pythons ( Python molurus bivittatus ), now well-established in Everglades National Park and much of South Florida USA, we radio-tracked 19 wild-caught adult pythons, 16 with VHF tags during 2006 through 2009 and 3 by GPS tags between 2010 and 2011. Our goal was to identify individual core-use areas and quantify home ranges, as well as to explore correlations of python movements with environmental parameters such as the presence of surface water. Results Radio-tracking periods ranged from 87 to 697 days for snakes with VHF tags, with a total of 5,119 tracking days (mean ± 1 SD = 319.9 ± 184.3 days); GPS tracking periods ranged from 12 to 93 days, with a total of 146 tracking days (mean ± 1 SD = 48.7 ± 40.7 days). We observed mean individual radio-tracked python home ranges of 22.5 km 2 (2250 ha) with overall low site fidelity; all home ranges were within the park boundary. Python core-use areas included slough and coastal habitat types, and we delineated 18 common-use areas (that is, areas where individual core-use areas spatially overlapped). Tree islands were a principal feature of common-use areas, even if they were not the predominant habitat type. Multiple common-use areas were in proximity to roads. The longest movements of individual pythons correlated well with presence of surface water, and occurred during both wet and dry seasons. Conclusions High-use areas determined from python habitat-use and movement data may be optimal locations for targeted control efforts and further studies on impacts to native fauna.

Florida↗

USGS2015

Environmental DNA (eDNA) sampling improves occurrence and detection estimates of invasive Burmese pythons

Environmental DNA (eDNA) methods are used to detect DNA that is shed into the aquatic environment by cryptic or low density species. Applied in eDNA studies, occupancy models can be used to estimate occurrence and detection probabilities and thereby account for imperfect detection. However, occupancy terminology has been applied inconsistently in eDNA studies, and many have calculated occurrence probabilities while not considering the effects of imperfect detection. Low detection of invasive giant constrictors using visual surveys and traps has hampered the estimation of occupancy and detection estimates needed for population management in southern Florida, USA. Giant constrictor snakes pose a threat to native species and the ecological restoration of the Florida Everglades. To assist with detection, we developed species-specific eDNA assays using quantitative PCR (qPCR) for the Burmese python ( Python molurus bivittatus ), Northern African python ( P . sebae ), boa constrictor ( Boa constrictor ), and the green ( Eunectes murinus ) and yellow anaconda ( E . notaeus ). Burmese pythons, Northern African pythons, and boa constrictors are established and reproducing, while the green and yellow anaconda have the potential to become established. We validated the python and boa constrictor assays using laboratory trials and tested all species in 21 field locations distributed in eight southern Florida regions. Burmese python eDNA was detected in 37 of 63 field sampling events; however, the other species were not detected. Although eDNA was heterogeneously distributed in the environment, occupancy models were able to provide the first estimates of detection probabilities, which were greater than 91%. Burmese python eDNA was detected along the leading northern edge of the known population boundary. The development of informative detection tools and eDNA occupancy models can improve conservation efforts in southern Florida and support more extensive studies of invasive constrictors. Generic sampling design and terminology are proposed to standardize and clarify interpretations of eDNA-based occupancy models.

Florida↗

USGS2021

Nutrient limitation of algae and macrophytes in streams: Integrating laboratory bioassays, field experiments, and field data

Successful eutrophication control strategies need to address the limiting nutrient. We conducted a battery of laboratory and in situ nutrient-limitation tests with waters collected from 9 streams in an agricultural region of the upper Snake River basin, Idaho, USA. Laboratory tests used the green alga Raphidocelis subcapitata , the macrophyte Lemna minor (duckweed) with native epiphytes, and in situ nutrient-limitation tests of periphyton were conducted with nutrient-diffusing substrates (NDS). In the duckweed/epiphyte test, P saturation occurred when concentrations reached about 100 μg/L. Chlorophyll a in epiphytic periphyton was stimulated at low P additions and by about 100 μg/L P, epiphytic periphyton chlorophyll a appeared to be P saturated. Both duckweed and epiphyte response patterns with total N were weaker but suggested a growth stimulation threshold for duckweed when total N concentrations exceeded about 300 μg/L and approached saturation at the highest N concentration tested, 1300 μg/L. Nutrient uptake by epiphytes and macrophytes removed up to 70 and 90% of the N and P, respectively. The green algae and the NDS nutrient-limitation test results were mostly congruent; N and P co-limitation was the most frequent result for both test series. Across all tests, when N:P molar ratios >30 (mass ratios >14), algae or macrophyte growth was P limited; N limitation was observed at N:P molar ratios up to 23 (mass ratios up to 10). A comparison of ambient periphyton chlorophyll a concentrations with chlorophyll a accrued on control artificial substrates in N-limited streams, suggests that total N concentrations associated with a periphyton chlorophyll a benchmark for desirable or undesirable conditions for recreation would be about 600 to 1000 μg/L total N, respectively. For P-limited streams, the corresponding benchmark concentrations were about 50 to 90 μg/L total P, respectively. Our approach of integrating controlled experiments and matched biomonitoring field surveys was cost effective and more informative than either approach alone.

Idaho↗

USGS2012

Preliminary checklist of amphibians and reptiles from Baramita, Guyana

We provide an initial checklist of the herpetofauna of Baramita, a lowland rainforest site in the Northwest Region of Guyana. Twenty-five amphibian and 28 reptile species were collected during two separate dry-season visits. New country records for two species of snakes are documented, contributing to the knowledge on the incompletely known herpetofauna of Guyana.

Baramita↗

USGS1997

Cutthroat trout avoidance of metals and conditions characteristic of a mining waste site: Coeur d'Alene River, Idaho

The South Fork basin of the Coeur d'Alene River, Idaho has been an area of heavy mining activity since the 1880s. The mining operations have resulted in elevated concentrations of metals in surface water, most notably cadmium, lead, zinc, and, to a lesser extent, copper. The metals affected surface water quality downstream in the Coeur d'Alene basin and are suspected to be one of the primary reasons for the reduction in populations of native westslope cutthroat trout Oncorhynchus clarki lewisi. The avoidance response of a surrogate species, Snake River cutthroat trout O. clarki (unnamed subspecies), was evaluated against conditions simulating those in the Coeur d'Alene River basin. Cutthroat trout avoided a metals mixture of these concentrations: Cd (0.30 ??g/L), Cu (6.0 ??g/L), Pb (0.6 ??g/L), and Zn (28 ??g/L). The avoidance response to either Cu or Zn alone was similar to the avoidance response to the mixture, suggesting that avoidance to the mixture was due to these metals. After acclimation to Zn at 55 ??g/L for 90 d, cutthroat trout detected and preferred a lower Zn concentration of 28 ??g/L. The lowest Zn concentrations avoided (28 ??g/L) were 1/6 to 1/78 the Zn concentrations measured in the South Fork and lower Coeur d'Alene River basins. Avoidance of metals-contaminated habitats by cutthroat trout may be, in part, responsible for reduced fish populations.

Transactions of the American Fisheries Society↗

USGS2000

The effects of dissolved gas supersaturation on white sturgeon larvae

Spill at dams has caused supersaturation of atmospheric gas in waters of the Columbia and Snake rivers and raised concerns about the effects of dissolved gas supersaturation (DGS) on white sturgeons Acipenser transmontanus. The timing and location of white sturgeon spawning and the dispersal of white sturgeon larvae from incubation areas makes the larval stage potentially vulnerable to the effects of DGS. To assess the effects of DGS on white sturgeon larvae, we exposed larvae to mean total dissolved gas (TDG) levels of 118% and 131% saturation in laboratory bioassay tests. Gas bubble trauma (GBT) was manifested as a gas bubble in the buccal cavity, nares, or both and it first occurred at developmental stages characterized by the formation of the mouth and gills. Exposure times of 15 min were sufficient to elicit these signs in larvae in various stages of development. No mortality was observed in larvae exposed to 118% TDG for 10 d, but 50% mortality occurred after a 13-d exposure to 131% TDG. The signs of GBT we observed resulted in positive buoyancy and alterations in behavior that may affect the dispersal and predation vulnerability of white sturgeon larvae. The exact depth distribution of dispersing white sturgeon larvae in the Columbia River currently is unknown. Thus, our results may represent a worst-case scenario if white sturgeon larvae are dispersed at depths with insufficient hydrostatic pressure to compensate for high TDG levels.

Transactions of the American Fisheries Society↗