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At least 1,117 records · Page 62Linked to original sources
USGS1997

A comparison of drainage basin nutrient inputs with instream nutrient loads for seven rivers in Georgia and Florida, 1986-90

Instream nutrient loads of the Altamaha, Suwannee, St. Johns, Satilla, Ogeechee, Withlacoochee, and Ochlockonee River Basins were computed and compared with nutrient inputs for each basin for the period 1986-90. Nutrient constituents that were considered included nitrate, ammonia, organic nitrogen, and total phosphorus. Sources of nutrients considered for this analysis included atmospheric deposition, fertilizer, animal waste, wastewater-treatment plant discharge, and septic discharge. The mean nitrogen input ranged from 2,400 kilograms per year per square kilometer (kg/yr)km2 in the Withlacoochee River Basin to 5,470 (kg/yr)km2 in the Altamaha River Basin. The Satilla and Ochlockonee River Basins also had large amounts of nitrogen input per unit area, totaling 5,430 and 4,920 (kg/yr)km2, respectively. Fertilizer or animal waste, as sources of nitrogen, predominated in all basins. Atmospheric deposition contributed less than one-fourth of the mean total nitrogen input to all basins and was consistently the third largest input in all but the Ogeechee River Basin, where it was the second largest. The mean total phosphorus input ranged from 331 (kg/yr)km2 in the Withlacoochee River Basin to 1,380 (kg/yr)km2 in both the Altamaha and Satilla River Basins. The Ochlockonee River Basin had a phosphorus input of 1,140 (kg/yr)km2. Per unit area, the Suwannee River discharged the highest instream mean total nitrogen and phosphorus loads and also discharged higher instream nitrate loads per unit area than the other six rivers. Phosphorus loads in stream discharge were highest in the Suwannee and Ochlockonee Rivers. The ratio of nutrient outputs to inputs for the seven studied rivers ranged from 4.2 to 14.9 percent, with the St. Johns (14.9 percent) and Suwannee (12.1 percent) Rivers having significantly higher percentages than those from the other basins. The output/input percentages for mean total phosphorus ranged from 1.0 to 7.0 percent, with the St. Johns (6.2 percent) and Suwannee (7.0 percent) Rivers exporting the highest percentage of phosphorus. Although instream nutrient loads constitute only one of the various pathways nutrients may take in leaving a river basin, only a relatively small part of nutrient input to the basin leaves the basin in stream discharge for the major coastal rivers examined in this study. The actual amount of nutrient transported in a river basin depends on the ways in which nutrients are physically handled, geographically distributed, and chemically assimilated within a river basin.

Florida, Georgia↗
USGS1998

Organochlorine compounds and trace elements in fish tissue and bed sediments in the lower Snake River basin, Idaho and Oregon

Fish-tissue and bed-sediment samples were collected to determine the occurrence and distribution of organochlorine compounds and trace elements in the lower Snake River Basin. Whole-body composite samples of suckers and carp from seven sites were analyzed for organochlorine compounds; liver samples were analyzed for trace elements. Fillets from selected sportfish were analyzed for organochlorine compounds and trace elements. Bed-sediment samples from three sites were analyzed for organochlorine compounds and trace elements. Twelve different organochlorine compounds were detected in 14 fish-tissue samples. All fish-tissue samples contained DDT or its metabolites. Concentrations of total DDT ranged from 11 micrograms per kilogram wet weight in fillets of yellow perch from C.J. Strike Reservoir to 3,633 micrograms per kilogram wet weight in a whole-body sample of carp from Brownlee Reservoir at Burnt River. Total DDT concentrations in whole-body samples of sucker and carp from the Snake River at C.J. Strike Reservoir, Snake River at Swan Falls, Snake River at Nyssa, and Brownlee Reservoir at Burnt River exceeded criteria established for the protection of fish-eating wildlife. Total PCB concentrations in a whole-body sample of carp from Brownlee Reservoir at Burnt River also exceeded fish-eating wildlife criteria. Concentrations of organochlorine compounds in whole-body samples, in general, were larger than concentrations in sportfish fillets. However, concentrations of dieldrin and total DDT in fillets of channel catfish from the Snake River at Nyssa and Brownlee Reservoir at Burnt River, and concentrations of total DDT in fillets of smallmouth bass and white crappie from Brownlee Reservoir at Burnt River exceeded a cancer risk screening value of 10 -6 established by the U.S. Environmental Protection Agency. Concentrations of organochlorine compounds in bed sediment were smaller than concentrations in fish tissue. Concentrations of p,p'DDE, the only compound detected in all three bed-sediment samples, ranged from 1.1 micrograms per kilogram dry weight in C.J. Strike Reservoir to 11 micrograms per kilogram dry weight in Brownlee Reservoir at Burnt River. Data from this study, compared with data collected in the upper Snake River Basin from 1992 to 1994, indicates that, in general, organochlorine concentrations in fish tissue and bed sediment increased from the headwaters of the Snake River in Wyoming downstream to Brownlee Reservoir. The largest trace-element concentrations in fish tissue were in liver samples from carp from Brownlee Reservoir at Burnt River and suckers from the Boise River near Twin Springs. Concentrations of most trace elements were larger in livers than in the sport- fish fillets. However, mercury concentrations were generally larger in the sportfish fillets; they ranged from 0.08 microgram per gram wet weight in yellow perch from C.J. Strike Reservoir to 0.32 microgram per gram wet weight in channel catfish from Brownlee Reservoir at Burnt River. None of the trace-element concentrations in fillets exceeded median international standards or U.S. Food and Drug Administration action levels. Large trace-element concentrations in the upper Snake River Basin were reported in liver samples from suckers from headwater streams, probably a result of historical mining and weathering of metal-rich rocks. Concentrations of most trace elements in the bed-sediment samples were largest in Brownlee Reservoir at Mountain Man Lodge. Concentrations of arsenic, cadmium, chromium, copper, nickel, and zinc in bed sediment from the Mountain Man Lodge site exceeded either the threshold effect level or probable effect level established by the Canadian Government for the protection of benthic life. Arsenic, chromium, copper, and nickel concentrations in bed sediment from Brownlee Reservoir at Burnt River and chromium, copper, and nickel in bed sediment from C.J. Strike Reservoir also exceeded the threshold effect level.

Idaho, Oregon↗
USGS1967

Chemical quality of surface water in the Allegheny River basin, Pennsylvania and New York

The Allegheny River is the principal source of water to many industries and to communities in the upper Ohio River Valley. The river and its many tributaries pass through 19 counties in northwestern and western Pennsylvania. The population in these counties exceeds 3 million. A major user of the Allegheny River is the city of Pittsburgh, which has a population greater than The Allegheny River is as basic to the economy of the upper Ohio River Valley in western Pennsylvania as are the rich deposits of bituminous coal, gas, and oil that underlie the drainage basin. During the past 5 years many streams that flow into the Allegheny have been low flowing because of droughts affecting much of the eastern United States. Consequently, the concentration of solutes in some streams has been unusually high because of wastes from coal mines and oil wells. These and other water-quality problems in the Allegheny River drainage basin are affecting the economic future of some areas in western Pennsylvania. Because of environmental factors such as climate, geology, and land and water uses, surface-water quality varies considerably throughout the river basin. The natural quality of headwater streams, for example, is affected by saltwater wastes from petroleum production. One of the streams most affected is Kinzua Creek, which had 2,900 parts per million chloride in a sample taken at Westline on September 2, 1959. However, after such streams as the Conewango, Brokenstraw, Tionesta, Oil, and French Creeks merge with the Allegheny River, the dissolved-solids and chloride concentrations are reduced by dilution. Central segments of the main river receive water from the Clarion River, Redbank, Mahoning, and Crooked Creeks after they have crossed the coal fields of west-central Pennsylvania. At times, therefore, these streams carry coal-mine wastes that are acidic. The Kiskiminetas River, which crosses these coal fields, discharged sulfuric acid into the Allegheny at a rate of 299 tons a day during the 1962 water year (October 1, 1961, to September 30, 1962). Mine water affects the quality of the Allegheny River most noticeably in its lower part where large withdrawals are made by the Pittsburgh Water Company at Aspinwall and the Wilkinsburg-Penn Joint Water Authority at Nadine. At these places raw river water is chemically .treated in modern treatment plants to control such objectionable characteristics as acidity and excessive concentrations of iron and manganese. Dissolved-solids content in the river varies along its entire length. In its upper reaches the water of the Allegheny River is a sodium chloride type, and at low flow, the sodium chloride is more than half the dissolved solids. In its lower reaches the water is a calcium sulfate .type, and at low flow the calcium sulfate is more than half the dissolved solids. In middle segments of the river from Franklin to Kittanning, water is more dilute and of a mixed type. Many small and several larger streams in the upper basin--such as the Conewango, Brokenstraw, Kinzua, Tionesta, and French Creeks--support large populations of game-fish. Even in segments of the Clarion River, Mahoning, and Redbank Creeks, which are at times affected by coal-mine wastes, fish are present. Although different species withstand varying amounts of contaminants in water, the continued presence of the fish indicates that the water is relatively pure and suitable for recreation and many other uses.

Water Supply Paper↗
USGS2009

Warmwater fish in rivers

Large warmwater rivers are complex ecosystems and often contain numerous species and habitats. We loosely define a large river as having a drainage area greater than 50,000 km2 and a stream order great than six. Further, these rivers typically have mean discharges greater than 1,500 m3/s. Channel patterns are highly variable among and within large rivers, generally forming a meandering pattern. Currently, many large rivers are confined by bank stabilization and are characterized by a straight channel because of anthropogenic alterations. Further, most large rivers in North America have altered hydrographs because of main-stem dams or dams within the drainage area. Large rivers that have been modified to reduce meandering and flooding present challenges for deployment and operation of fish sampling gear. Water temperature in large rivers is highly variable across North America and varies longitudinally within a river. For example, the Missouri River originates in the Rocky Mountains and terminates at the confluence with the Mississippi River near St. Louis, Missouri. Thus, mean water temperature in the headwaters is considerably different than the confluence. As a result, we defined warmwater by the dominant fish assemblage found in the river. Most fish species can be categorized into broad categories, such as coldwater, coolwater, or warmwater, based on water temperature in the natural environments where they occur. We define warmwater rivers as rivers that were naturally void of coldwater fishes such as trouts, salmons, and ciscoes. This is appropriate because it disregards zoogeographic boundaries that may limit the inclusion of rivers in the warmwater category. For example, the Colorado River is in a different zoogeographic subdivision than the Ohio River (Moyle and Cech 2000), but both rivers contain warmwater fish assemblages.

Book chapter↗
USGS2014

An ecological response model for the Cache la Poudre River through Fort Collins

The Poudre River Ecological Response Model (ERM) is a collaborative effort initiated by the City of Fort Collins and a team of nine river scientists to provide the City with a tool to improve its understanding of the past, present, and likely future conditions of the Cache la Poudre River ecosystem. The overall ecosystem condition is described through the measurement of key ecological indicators such as shape and character of the stream channel and banks, streamside plant communities and floodplain wetlands, aquatic vegetation and insects, and fishes, both coolwater trout and warmwater native species. The 13- mile-long study area of the Poudre River flows through Fort Collins, Colorado, and is located in an ecological transition zone between the upstream, cold-water, steep-gradient system in the Front Range of the Southern Rocky Mountains and the downstream, warm-water, low-gradient reach in the Colorado high plains. The City wanted to better understand the ecological response of the Poudre River ecosystem to potential changes in stream flow and other physical parameters through the conceptual framework of a multivariable integrated model. This goal was met through the use of a probabilistic model based on Bayesian concepts. This construct allowed the integration of a wide range of data and expert opinion (as informed by local data) to predict potential changes to ecosystem conditions under various flow scenarios. Nine flow scenarios representing past, present, and possible future hydrology were developed as the primary model input. Both reach-scale drivers such as stream channel conditions and pollutant loads, as well as ecological conditions, including species composition, interactions, and habitat requirements influenced model-predicted ecosystem outcomes. Model output consisted of probability distributions for eight ecological indicators collectively representing the physical setting, aquatic life, and riparian habitats of the river ecosystem. We are confident in model predictions related to probable trends, relative magnitude of changes and potential ecosystem responses to changing flow conditions, though data availability and the process of converting diverse data types into a common unit (probabilities) limit precision of individual results. Key findings suggest that: The present ecological function of the Poudre River is altered as a result of more than 150 years of human influences that include highly managed flows, urbanization, gravel mining, channelization and urban and industrial encroachment in the floodplain, underscoring the vulnerable and complex character of the Poudre River; A continuation of today’s flow management will lead to ongoing changes in ecosystem condition, and additional water depletions will compromise ecological conditions; High flows play an essential role in maintaining and improving the aquatic and riparian condition of the river; Adequate flows in base-flow periods are critical to desirable water quality, and thriving fish and insect populations; Improvement of native aquatic life is possible if issues related to channel modifications, siltation, invasive species, and base and high flow conditions are managed properly; The present confined river channel and modified flows has reduced the potential for a keystone and iconic species, plains cottonwood, to be self-sustaining in the study area; The streamside corridor retains the potential to support a functioning riparian forest that provides important ecological services if periodic floodplain inundation occurs. Environmental flows that combine stable and adequate flows in base-flow periods with occasional rejuvenating high flows that meet target levels defined in this study are likely improve all biological indicators across the system. ERM test scenarios that include both stable base flows and rejuvenating high flows indicate that substantial improvements in the river ecosystem can be achieved with improved management of flow volumes similar to those observed in the river during the last half century of intensive water development. These results underscore the possibility of improving the river ecosystem through active management while still maintaining the Poudre’s diverse economic benefits and role as a working river. The ERM was designed to represent the multi-dimensional ecological character of the contemporary urban Poudre River. It provides a scientific foundation that can serve as a decision support tool and foster a more informed community discussion about the future of the river as it provides a better understanding of the likely response of the Poudre River ecosystem to environmental flow management and other stewardship activities. In particular, model results can assist managers in developing specific management actions to achieve desirable goals for key indicators of river health.

Colorado↗
USGS2011

Effects of flow releases on macroinvertebrate assemblages in the Indian and Hudson Rivers in the Adirondack Mountains of Northern New York

The effects of flow releases (daily during spring and four times weekly during summer) from a small impoundment on macroinvertebrate assemblages in the lower Indian River and upper Hudson River of northern New York were assessed during the summers of 2005 and 2006. Community indices, feeding guilds, dominant species and Bray–Curtis similarities at three sites on the Indian River, below a regulated impoundment, were compared with those at four control sites on the Cedar River, below a run-of-the-river impoundment of comparable size. The same indices at four less-likely affected sites on the Hudson River, below the mouth of the Indian River, were compared with those at an upstream control site on the Hudson River. Results show that the function and apparent health of macroinvertebrate communities were generally unaffected by atypical flow regimes and/or altered water quality at study reaches downstream from both dams in the Indian, Cedar and Hudson Rivers. The lentic nature of releases from both impoundments, however, produced significant changes in the structure of assemblages at Indian and Cedar River sites immediately downstream from both dams, moderate effects at two Indian River sites 2.4 and 4.0 km downstream from its dam, little or no effect at three Cedar River sites 7.2–34.2 km downstream from its dam, and no effect at any Hudson River site. Bray–Curtis similarities indicate that assemblages did not differ significantly among sites within similar impact categories. The paucity of scrapers at all Indian River sites, and the predominance of filter-feeding Simulium gouldingi and Pisidium compressum immediately below Abanakee dam, show that only minor differences in dominant species and trophic structure of macroinvertebrate communities occurred at affected sites in the Indian River compared to the Cedar River. Thus, flow releases had only a small, localized effect on macroinvertebrate communities in the Indian River.

New York↗
USGS2020

Smallmouth buffalo (Ictiobus bubalus) growth across a 1200km human use and ecological disturbance gradient in the Upper Mississippi River System

Smallmouth buffalo (Ictiobus bubalus) is a common and widely distributed large-bodied species of the family Catostomidae. It inhabits large rivers and reservoirs of the eastern continental United States (east of the continental Divide) and is most abundant and common in the large rivers of the Midwest and Central Plains, though it does occur as far north and east as the Hudson Bay drainage and as far south and west as Arizona (Edwards and Twoney 1982). Historically, smallmouth buffalo were an important component of commercial fisheries on both the Mississippi and Illinois Rivers. However, following the introduction of common carp (Cyprinus carpio) in the mid-1800s (Carlander 1954), the construction of a system of navigation dams on Upper Mississippi and Illinois River in the 1930s (USGS 1999), and water quality/pollution issues through the 1980s (Weiner 2010), the role of smallmouth buffalo in the overall UMRS fish community and commercial fishery has generally diminished relative to historical standards. Still, smallmouth buffalo remains an important and valued component of the UMRS commercial fishery. The study area is represented by three study reaches on the Illinois River and three study reaches on the Upper Mississippi River (Figure 1). Collectively, these study reaches represent nearly 1200 river km and exist across strong and pronounced ecological and disturbance gradients. For example, habitat composition, water quality, commercial navigation intensity, aquatic plant prominence, and the number and abundance of nonnative fish species vary strongly across the study domain, with northern Mississippi River reaches exhibiting less navigation traffic, better water quality, markedly greater aquatic plant prominence, more diverse habitat composition, and comparably much smaller numbers of nonnative species than the lower Mississippi River study reach and those on the Illinois River (USGS 1999; Johnson and Hagerty [eds] 2008; Irons et al. 2009). Long term monitoring efforts conducted under the auspices of the Upper Mississippi River Restoration program over the past 27 years have provided tremendous insights into shifts and changes of the overall UMRS fish community (Ickes et al. 2005; Garvey et al. 2010; Schramm and Ickes 2016). However, these monitoring efforts observe only the most basic aspects of the UMRS fish community (i.e., catch, length, weight, distribution, and occurrence). To gain a greater understanding of forces driving community level shifts and changes, more directed study is needed on the functional attributes of fish populations (i.e., growth, mortality, recruitment). Collectively, these functional attributes of populations are termed population dynamics and/or vital rates. It is important to note, the population dynamics of fishes in large rivers is generally poorly understood, especially for non-game species (Ickes 2018). The prevailing view is that abiotic factors largely govern inter-annual population dynamics, typically based upon rather short-term observations and correlations with assorted abiotic river attributes that vary on a seasonal or annual basis (for example, Risotto and Turner 1985). However, the role that longer-term abiotic factors play in regulating population abundance, or that biotic factors internal to the population (e.g., spawner-recruit dynamics, growth dynamics) or external to the population (e.g., predator-prey dynamics, sympatric competitors, disease) remain poorly understood. Achieving a greater understanding of these dynamics is important for stock, game, and invasive species management. In 2017, as part of a larger study designed to gain vital population rate information for smallmouth buffalo in the Upper Mississippi and Illinois Rivers (“Smallmouth Buffalo population demographics of the Upper Mississippi River System”; UMRR LTRM 2018SOW project items 2018MMBF1-2018MMBF6) annual growth patterns in smallmouth buffalo were determined and evaluated. This was accomplished by measuring growth histories recorded in annual growth increments on hard bony parts (here otoliths), a method known generically as biochronology, and somewhat analogous to dendrochronology practiced by foresters. These methods allow one to generate time-series of annual growth histories that depend upon age, year class (i.e., cohort), and annual environmental conditions experienced by the population over time (Weisberg, 1993). Biochronology methods were used to develop a 36-year time series of smallmouth buffalo growth in the Upper Mississippi and Illinois Rivers across a 1200 km ecological and human use disturbance gradient. Annual growth intervals were identified and measured from otoliths to determine fish age and growth history. A mixed model that parses the growth increment into age and year effects was fit to these data. Given the pronounced ecological and disturbance gradients inherent to the UMRS and the study domain, an a priori expectation of differing patterns in growth is accepted as a null hypothesis to test. The goal of this study was to model smallmouth buffalo growth as a function of the age of the fish and the growth year in which the growth was gained. The primary modeling objective was to parse growth observed on each annulus into a portion attributable to the age of the fish and the portion attributable to the year in which the growth was gained. In effect, this modeling approach removes the somewhat trivial age effects on growth so that a non-confounded growth year effect can be gained. Results attributable to growth year provide a time series of growth information that is of the same duration as the oldest fish observed and solely reflects environmental influences on growth. These model responses can then be investigated relative to environmental covariate time-series suspected of influencing growth of smallmouth buffalo in the Upper Mississippi and Illinois Rivers (e.g., temperature, discharge, population density, population mortality, forage availability, sympatric competition, habitat composition, navigation intensity, nonnative fish prominence, etc.). Thus, the primary scientific objective was to investigate if and how smallmouth buffalo growth varies in accordance with innate ecological and disturbance gradients across the study domain.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗
USGS2021

Integrating regional and local monitoring data and assessment tools to evaluate habitat conditions and inform river restoration

R Restoring degraded rivers requires initial assessment of the fluvial landscape to identify stressors and riverine features that can be enhanced. We associated local-scale river habitat data collected using standardized national monitoring tools with modeled regional water temperature and flow data on mid-sized northwest U.S. rivers (30–60 m wide). We grouped these rivers according to quartiles of their modeled mean August water temperature and examined their physical habitat structure and flow. We then used principal components analysis to summarize the variation in several dimensions of physical habitat. We also compared local conditions in the Priest River, a river targeted for restoration of native salmonid habitat in northern Idaho, with those in other rivers of the region to infer potential drivers controlling water temperature. The warmest rivers had physical structure and fluvial characteristics typical of thermally degraded rivers, whereas the coldest rivers had higher mean summer flows and greater channel planform complexity. The Priest River sites had approximately twice as many deep residual pools (>50, >75, and >100 cm) and incision that averaged approximately twice that in the coldest rivers. Percentage fines and natural cover in the Priest were also more typical of the higher-temperature river groups. We found generally low instream cover and low levels of large wood both across the region and within the Priest River. Our approach enabled us to consider the local habitat conditions of a river in the context of other similarly sized rivers in the surrounding region. Understanding this context is important for identifying potential influences on river water temperature within the focal basin and for defining attainable goals for management and restoration of thermal and habitat conditions.

Idaho, Washington↗
USGS2020

Effects of tidally varying river flow on entrainment of juvenile salmon into Sutter and Steamboat Sloughs

Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management actions (e.g., fish guidance structures) to modify routing probabilities at this location. Main Content View Larger 1 Sponsored by the Delta Science Program and the UC Davis Muir Institute ABSTRACT Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access SFEWS Volume 19 | Issue 2 | Article 4 https://doi.org/10.15447/sfews.2021v19iss2art4 * Corresponding author: rperry@usgs.gov 1 Western Fisheries Research Center US Geological Survey Cook, WA 98605 USA 2 California Water Science Center US Geological Survey Sacramento, CA 95819 USA 3 Current address: Mid-Columbia Fish and Wildlife Conservation Office Yakima Basin Program US Fish and Wildlife Service Yakima, WA 98903 USA the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management RESEARCH Effects of Tidally Varying River Flow on Entrainment of Juvenile Salmon into Sutter and Steamboat Sloughs Jason G. Romine 1,3 , Russell W. Perry* 1 , Paul R. Stumpner 2 , Aaron R. Blake 2 , Jon R. Burau 2 2 VOLUME 19, ISSUE 2, ARTICLE 4 actions (e.g., fish guidance structures) to modify routing probabilities at this location. KEY WORDS Telemetry, juvenile salmon, migration routing, survival INTRODUCTION The Sacramento–San Joaquin River Delta (hereafter referred to as “the Delta”) is a complex series of channels and embayments in west central California of the United States. The Delta has undergone drastic transformation through construction of dikes, levees, reclaimed land, dredged canals and cuts, and water export projects (Nichols et al. 1986). The loss of habitat coupled with introduction of non-native piscivorous fishes has led to the decline of several salmonid stocks that utilize the Delta (Lindley 2009; National Marine Fisheries Service 2014). The physical complexity of the Delta poses significant challenges for understanding how juvenile salmon negotiate the complex channel network and survive in different migration routes. Yet such information is critical for understanding how water-management actions, such as operation of water diversions, influence survival of juvenile salmon. Through-Delta survival of juvenile Chinook Salmon that emigrate from the Sacramento River ranges from 10% to 80%, depending on river flow and migration route (Perry et al. 2018). The Delta can be broken down into four primary routes: (1) Sacramento River, (2) Steamboat and Sutter sloughs, (3) Georgiana Slough, and (4) Delta Cross Channel (DCC). Fish that remain in the Sacramento River consistently have the highest survival (Perry et al. 2010, 2013, 2018). However, fish that enter the interior Delta—the region to the south of the Sacramento River (Figure 1)—have the lowest survival among all routes and survive at less than half the rate of fish in the Sacramento River, likely as a result of longer migration times and exposure to non-native predators (Newman and Brandes 2010; Perry et al. 2018). On average, fish that migrate through Steamboat and Sutter sloughs exhibit survival similar to fish that remain in the Sacramento River at high flows but have lower survival at low flows (Perry et al. 2018). Because of differences in survival among migration routes, the proportion of fish that use each route affects the total survival of the population. Therefore, understanding the drivers behind fish routing in the Delta is imperative to inform management actions that help in the recovery of imperiled salmonid populations in the Central Valley. For example, Perry et al. (2013) found that total survival through the Delta could be increased by up to 7 percentage points by eliminating entrainment into Georgiana Slough and the DCC. These findings led to investigation of management actions to reduce entrainment into the DCC (Plumb et al. 2016) and Georgiana Slough (Perry et al. 2014). Both physical and non-physical barriers have been tested at the entrance to Georgiana Slough divergence (Perry et al. 2014; Romine et al. 2016). A non-physical barrier was able to reduce entrainment to the interior Delta through Georgiana Slough (Perry et al. 2014), but a floating fish-guidance structure reduced entrainment to a lesser extent (Romine et al. 2016). Research and engineering solutions to minimize entrainment have focused on the Georgiana Slough divergence, the DCC divergence, and the Old River divergence in the San Joaquin River (Buchanan et al. 2013; SJRG 2013). However, there has been little focus on understanding fish routing dynamics at other primary river junctions in the Delta, such as Sutter and Steamboat sloughs. Sutter and Steamboat sloughs diverge from the Sacramento about 10 km upstream from the DCC and Georgiana slough, and represent the first major junction that juvenile salmon encounter as they enter the Delta from the Sacramento River ( Figure 1 ). Because Sutter and Steamboat sloughs are upstream of the entrance to the interior Delta via the DCC and Georgiana Slough (Figure 1), juvenile salmon that enter Sutter and Steamboat sloughs avoid entrainment into the interior Delta where survival is low. Thus, management actions to increase entrainment could increase overall.

Sacramento–San Joaquin Delta↗
USGS2018

Coherence between coastal and river flooding along the California coast

Water levels around river mouths are intrinsically determined by sea level and river discharge. If storm-associated coastal water-level anomalies coincide with extreme river discharge, landscapes near river mouths will be flooded by the hydrodynamic interactions of these two water masses. Unfortunately, the temporal relationships between ocean and river water masses are not well understood. The coherence between extreme river discharge and coastal water levels at six California river mouths across different climatic and geographic regions was examined. Data from river gauges, wave buoys, and tide gauges from 2007 to 2014 were integrated to investigate the relationships between extreme river discharge and coastal water levels near the mouths of the Eel, Russian, San Lorenzo, Ventura, Arroyo Trabuco, and San Diego rivers. Results indicate that mean and extreme coastal water levels during extreme river discharge are significantly higher compared with background conditions. Elevated coastal water levels result from the combination of nontidal residuals (NTRs) and wave setups. Mean and extreme (>99th percentile of observations) NTRs are 3–20 cm and ∼30 cm higher during extreme river discharge conditions, respectively. Mean and extreme wave setups are up to 40 cm and ∼20–90 cm higher during extreme river discharge than typical conditions, respectively. These water-level anomalies were generally greatest for the northern rivers and least for the southern rivers. Time-series comparisons suggest that increases in NTRs are largely coherent with extreme river discharge, owing to the low atmospheric pressure systems associated with storms. The potential flooding risks of the concurrent timing of these water masses are tempered by the mixed, semidiurnal tides of the region that have amplitudes of 2–2.5 m. In summary, flooding hazard assessments for floodplains near California river mouths for current or future conditions with sea-level rise should include the temporal coherence of fluvial and oceanic water levels.

California↗
USGS2010

Summary of Bed-Sediment Measurements Along the Platte River, Nebraska, 1931-2009

Rivers are conduits for water and sediment supplied from upstream sources. The sizes of the sediments that a river bed consists of typically decrease in a downstream direction because of natural sorting. However, other factors can affect the caliber of bed sediment including changes in upstream water-resource development, land use, and climate that alter the watershed yield of water or sediment. Bed sediments provide both a geologic and stratigraphic record of past fluvial processes and quantification of current sediment transport relations. The objective of this fact sheet is to describe and compare longitudinal measurements of bed-sediment sizes made along the Platte River, Nebraska from 1931 to 2009. The Platte River begins at the junction of the North Platte and South Platte Rivers near North Platte, Nebr. and flows east for approximately 500 kilometers before joining the Missouri River at Plattsmouth, Nebr. The confluence of the Loup River with the Platte River serves to divide the middle (or central) Platte River (the Platte River upstream from the confluence with the Loup River) and lower Platte River (the Platte River downstream from the confluence with Loup River). The Platte River provides water for a variety of needs including: irrigation, infiltration to public water-supply wells, power generation, recreation, and wildlife habitat. The Platte River Basin includes habitat for four federally listed species including the whooping crane (Grus americana), interior least tern (Sterna antillarum), piping plover (Charadrius melodus), and pallid sturgeon (Scaphirhynchus albus). A habitat recovery program for the federally listed species in the Platte River was initiated in 2007. One strategy identified by the recovery program to manage and enhance habitat is the manipulation of streamflow. Understanding the longitudinal and temporal changes in the size gradation of the bed sediment will help to explain the effects of past flow regimes and anticipated manipulation of streamflows on the channel morphology and habitat.

Fact Sheet↗
USGS2012

Effects of Iron Gate Dam discharge and other factors on the survival and migration of juvenile coho salmon in the lower Klamath River, northern California, 2006-09

Current management of the Klamath River includes prescribed minimum discharges intended partly to increase survival of juvenile coho salmon during their seaward migration in the spring. To determine if fish survival was related to river discharge, we estimated apparent survival and migration rates of yearling coho salmon in the Klamath River downstream of Iron Gate Dam. The primary goals were to determine if discharge at Iron Gate Dam affected coho salmon survival and if results from hatchery fish could be used as a surrogate for the limited supply of wild fish. Fish from hatchery and wild origins that had been surgically implanted with radio transmitters were released into the Klamath River slightly downstream of Iron Gate Dam at river kilometer 309. Tagged fish were used to estimate apparent survival between, and passage rates at, a series of detection sites as far downstream as river kilometer 33. Conclusions were based primarily on data from hatchery fish, because wild fish were only available in 2 of the 4 years of study. Based on an information-theoretic approach, apparent survival of hatchery and wild fish was similar, despite differences in passage rates and timing, and was lowest in the 54 kilometer (km) reach between release and the Scott River. Models representing the hypothesis that a short-term tagging- or handling-related mortality occurred following release were moderately supported by data from wild fish and weakly supported by data from hatchery fish. Estimates of apparent survival of hatchery fish through the 276 km study area ranged from 0.412 (standard error [SE] 0.048) to 0.648 (SE 0.070), depending on the year, and represented an average of 0.790 per 100 km traveled. Estimates of apparent survival of wild fish through the study area were 0.645 (SE 0.058) in 2006 and 0.630 (SE 0.059) in 2009 and were nearly identical to the results from hatchery fish released on the same dates. The data and models examined supported positive effects of water temperature, river discharge, and fish weight as factors affecting apparent survival in the Klamath River upstream of the confluence with the Shasta River, but few of the variables examined were supported as factors affecting survival farther downstream. The effect of water temperature on apparent survival upstream of the Shasta River was greater than Iron Gate Dam discharge, which was greater than fish weight. The estimated effect on apparent survival between release and the Shasta River with each 1degree Celsius increase in water temperature was 1.4 times the effect of a 100 cubic feet per second increase in Iron Gate Dam discharge and 2.5 times the effect of a 1 gram increase in fish weight, and the effects of discharge and weight diminished at higher water temperatures up to the 17.91 degrees Celsius maximum present in the data examined. The rate of passage at the detection site near the confluence with the Shasta River was primarily affected by date of release, and water temperature was the only factor supported at the site near the confluence with the Scott River. Passage rates at sites downstream of the Scott River were affected by several of the variables examined, but the estimated effects were small and often imprecise. Results from this study indicate that discharge at Iron Gate Dam has a positive effect on apparent survival of yearling coho salmon in the Klamath River upstream of the Shasta River, but the effects are smaller than those of water temperature and are mediated by it. The results also support the use of hatchery fish as surrogates for wild fish in studies of apparent survival, but the available evidence suggests that study fish should be released well upstream of the area of interest, due to short-term differences in survival and migration behavior of hatchery and wild fish after release.

California↗
USGS1996

Summary of the Snake River plain Regional Aquifer-System Analysis in Idaho and eastern Oregon

Regional aquifers underlying the 15,600-square-mile Snake River Plain in southern Idaho and eastern Oregon was studied as part of the U.S. Geological Survey's Regional Aquifer-System Analysis program. The largest and most productive aquifers in the Snake River Plain are composed of Quaternary basalt of the Snake River Group, which underlies most of the 10,8000-square-mile eastern plain. Aquifer tests and simulation indicate that transmissivity of the upper 200 feet of the basalt aquifer in the eastern plain commonly ranges from about 100,000 to 1,000,000 feet squared per day. However, transmissivity of the total aquifer thickness may be as much as 10 million feet squared per day. Specific yield of the upper 200 feet of the aquifer ranges from about 0.01 to 0.20. Average horizontal hydraulic conductivity of the upper 200 feet of the basalt aquifer ranges from less than 100 to 9,000 feet per day. Values may be one to several orders of magnitude higher in parts in individual flows, such as flow tops. Vertical hydraulic conductivity is probably several orders of magnitude lower than horizontal hydraulic conductivity and is generally related to the number of joints. Pillow lava in ancestral Snake River channels has the highest hydraulic conductivity of all rock types. Hydraulic conductivity of the basalt decreases with depth because of secondary filling of voids with calcite and silica. An estimated 80 to 120 million acre-feet of water is believed to be stored in the upper 200 feet of the basalt aquifer in the eastern plain. The most productive aquifers in the 4,800-square-mile western plain are alluvial sand and gravel in the Boise River valley. Although aquifer tests indicate that transmissivity of alluvium in the Boise River valley ranges from 5,000 to 160,000 feet squared per day, simulation suggests that average transmissivity of the upper 500 feet is generally less than 20,000 feet squared per day. Vertically averaged horizontal hydraulic conductivity of the upper 500 feet of alluvium ranges from about 4 to 40 feet per day; higher values can be expected in individual sand and gravel zones. Vertical hydraulic conductivity is considerably lower because of the presence of clay layers. Hydraulic heads measured in piezometers, interpreted from diagrams showing ground-water flow and equipotential lines and estimated by computer simulation, demonstrate that water movement is three dimensional through the rock framework. Natural recharge takes place along the margins of the plain where head decreases with depth; discharge takes place near some reaches of the Snake River and the Boise River where head increases with depth. Geothermal water in rhyolitic rocks in the western plain and western part of the eastern plain has higher hydraulic head than the overlying cold water. Geothermal water, therefore, moves upward and merges into the cold-water system. Basin water-budget analyses indicate that the volume of cold water. Carbon-14 age determinations, which indicate that residence time of geothermal water is 17,700 to 20,300 years, plus or minus 4,000 years, imply slow movement of water through the geothermal system. Along much of its length, the Snake River gains large quantities of ground water. On the eastern plain, the river gained about 1.9 million acre-feet of water between Blackfoot and Neeley, Idaho, in 1980. Between Milner and King Hill, Idaho, the river gained 4.7 million acre-feet, mostly as spring flow from the north side. Upstream from Blackfoot and in the vicinity of Lake Walcott, the rover loses flow to ground water during parts or all of the year. On the western plain, river gains from ground water are small relative to those on the eastern plain; most are from seepage. Streams in tributary drainage basins supply calcium/bicarbonate type and calcium/magnesium/bicarbonate type water to the plain. Water type is a reflection of the chemical composition of rocks in the drainage basin, Concentrations of dissolved solids are smallest, about 50 milligrams per liter, in streams such as the Boise River that drain areas of granitic rocks; concentrations are greatest, about 400 milligrams per liter, in streams such as the Owyhee and Raft Rivers that drain area of sedimentary rocks. Water chemistry reflects the interaction of surface water and ground water. The chemical composition of ground water in the plain is essentially the same as that in streamflow and groundwater discharge from tributary drainage basins. Tributary drainage basins supplied 85 percent of the ground-water recharge in the eastern plain during 1980 and a nearly equivalent percentage of the solute load in ground water; human activities and dissolution of minerals supplied the other solutes. Dissolved-solids concentrations in ground water were generally less than 400 milligrams per liter. Water from the lower geothermal system is chemically different from water from the upper cold-water system. Geothermal water typically has greater concentrations of sodium, bicarbonate, sulfate, chloride, fluoride, silica, arsenic, boron, and lithium and smaller concentrations of calcium, magnesium, and hydrogen. Difference are attributed to ion exchange as geothermal moves through the rock framework. Irrigation, mostly on the Snake River Plain, accounted for about 96 percent of consumptive water use in Idaho during 1980. The use of surface water for irrigation for more than 100 years has caused major changes in the hydrologic system on the plain. Construction of dams, reservoirs, and diversifications effected planned changes in the surface-water system but resulted in largely unplanned changes in the ground-water system. During those years of irrigation, annual recharge in the main part of the eastern plain increased to about 6.7 million acre-feet in 1980, or by about 70 percent. Most of the increase was from percolation of surface water diverted for irrigation. From preirrigation to 1952, groundwater storage increased about 24 million acre-feet, and storage decreased from 1952 to 1964 and from 1976 to 1980 because of below-normal precipitation and increased withdrawals of ground water for irrigation. Annual ground-water discharge increased to about 7.1 million acre-feet in 1980, or about 80 percent since the start of irrigation. About 10 percent of the 1980 total discharge was ground-water pumpage. About 3.1 million acres, or almost one-third of the plain, was irrigated during 1980: 2.0 million acres with surface water, 1.0 million acres with ground water, and 0.1 million acres with combined surface and ground water. About 8.9 million acre-feet of Snake River water was diverted for irrigation during 1980 and 2.3 million acre-feet of ground water was pumped from 5,300 wells. Most irrigation wells on the eastern plain are open to basalt. About two-thirds of them yield more than 1,500 gallons per minute with a reported maximum of 7,240 gallons per minute; drawdown is less than 20 feet in two-thirds of the wells. Most irrigation wells on the western plain are open to sedimentary rocks. About one-third of them yield more than 1,00 gallons per minute with a reported maximum of 3,850 gallons per minute; drawndown is less than 20 feet in about one-fifth of the wells. The major instream use of water on the Snake River Plain is hydroelectric power generation. Fifty-two million acre-feet of water generated 2.6 million megawatthours of electricity during 1980. Digital computer ground-water flows models of the eastern and western plain reasonably simulated regional changes in water levels and ground-water discharges from 1880 (preirrigation) to 1980. Model results support the concept of three-dimensional flow and the hypotheses of no underflow between the eastern and western plain. Simulation of the regional aquifer system in the eastern plain indicates that is 1980 hydrologic conditions, including pumpage, were to remain the same for another 30 years, moderate declines in ground-water levels and decreases in spring discharges would continue. Increased ground-water pumpage to irrigate an additional 1 million acres could cause ground-water levels to decline a few tens of feet in the central part of the plain and could cause corresponding decreases in ground-water discharge. A combination of actions such as increased ground-water pumpage and decreased use of surface water for irrigation (resulting in reduced recharge) would accentuate the changes.

Idaho;Oregon↗
USGS2004

Hydrologic and water-quality characteristics for Calf Creek near Silver Hill, Arkansas, and selected Buffalo River sites, 2001-2002

The Buffalo River and its tributary, Calf Creek, are in the White River Basin in the Ozark Plateaus physiographic province in north-central Arkansas. A better understanding of the hydrology and water quality of Calf Creek is of interest to many, including the National Park Service, which administers the Buffalo National River, to evaluate its effect on the hydrology and water quality of the Buffalo River. The streamflow and water-quality characteristics of Calf Creek near Silver Hill, Arkansas, were compared to two sites on the Buffalo River upstream (near Boxley, Arkansas) and downstream (near St. Joe, Arkansas) from the confluence of Calf Creek for calendar years 2001 and 2002. Annual and seasonal loads were estimated for Calf Creek for nutrients, dissolved organic carbon, and suspended sediment and compared with loads at sites on the Buffalo River. Flow-weighted concentrations and yields were computed from estimated annual loads for comparison with other developed and undeveloped basins. Streamflow varied annually and seasonally at the three sites. The Buffalo River near St. Joe had the largest annual mean streamflow (805 to 1,360 cubic feet per second for 2001 and 2002) compared to the Buffalo River near Boxley (106 and 152 cubic feet per second for 2001 and 2002) and Calf Creek (39 and 80 cubic feet per second for 2001 and 2002). Concentrations of nutrients, suspended sediment, and fecal indicator bacteria generally were greater in samples from Calf Creek than in samples collected from both Buffalo River sites. Bacteria and suspended-sediment concentrations were greater in samples collected during high-flow events at all three sites. The Buffalo River near Boxley had the lowest concentrations for nutrients, suspended sediment, and fecal indicator bacteria. Estimated annual loads of the nutrients, suspended sediment, and organic carbon for 2001 and 2002 demonstrated substantial variability between the three sites and through time. Estimated loads for nutrients at the Buffalo River near St. Joe were 7 to 27 times the median loads estimated for Calf Creek and suspended sediment loads were as much as 120 times greater. Dissolved organic carbon loads were 16 to 20 times greater at the Buffalo River near St. Joe than for Calf Creek. The Buffalo River near Boxley had the smallest annual loads for all constituents except for suspended sediment, which were slightly greater than suspended sediment loads estimated for Calf Creek. Higher loads would be expected at the Buffalo River near St. Joe because of the larger basin area and larger volume of streamflow. Likewise, estimated loads for all three sites were greater during seasons that had greater streamflow than during seasons with more frequent periods of base-flow conditions. The highest daily loads occurred in the fall and winter of 2001 and the winter and spring of 2002.Flow-weighted concentrations generally were higher for Calf Creek than concentrations for the two sites on the Buffalo River and for typical flow-weighted concentrations found in undeveloped basins. However, the flow-weighted concentrations were lower than concentrations in a developed basin. Annual yields calculated for Calf Creek were higher than the two sites on the Buffalo River and sites that are representative of undeveloped basins but lower than a site representative of a developed basin. The Buffalo River near Boxley had yields that were less than the yields typical of undeveloped basins.

Arkansas↗
USGS2005

Hydrologic and water-quality conditions in the Kansas River, northeast Kansas, November 2001–August 2002, and simulation of ammonia assimilative capacity and bacteria transport during low flow

Large concentrations of ammonia and densities of bacteria have been detected in reaches of the Kansas River in northeast Kansas during low streamflow conditions, prompting the Kansas Department of Health and Environment (KDHE) to list these reaches as water-quality limited with respect to ammonia and fecal coliform bacteria. Sources for ammonia and bacteria in the watershed consist of wastewater-treatment facilities (WWTFs) and agricultural and urban runoff. The U.S. Geological Survey (USGS), in cooperation with KDHE, conducted an investigation of the Kansas River to characterize hydrologic and water-quality conditions and to simulate ammonia assimilative capacity and bacteria transport during low streamflow. This report characterizes the water-quality conditions, documents the calibration of a two-dimensional water-quality model, and presents results of hypothetical simulations of existing and future WWTFs discharging to the Kansas River during low streamflow. Water samples were collected during low streamflow conditions at 50 sampling sites along and near the Kansas River between Wamego and Kansas City, Kansas, during three synoptic surveys conducted between November 2001 and August 2002. The analytical results from these samples indicated that ammonia and other nutrient concentrations and fecal coliform bacteria densities increased in the Kansas River from Wamego to Kansas City. Point sources were the primary contributors of ammonia and fecal coliform bacteria during low-flow conditions. Generally, ammonia concentrations in the Kansas River were largest at sampling sites just downstream from WWTFs. Overall, ammonia concentrations in the Kansas River, tributaries, and WWTF effluent were larger in the winter than during the summer. None of the main-stem sample concentrations exceeded the State of Kansas pH- and temperature-dependent chronic aquatic-life criteria for ammonia during the sampling periods. Other nutrients, such as total nitrogen and total phosphorus, indicated a similar, but less variable, spatial pattern along the main stem of the Kansas River, with concentrations increasing slightly downstream from major WWTFs. The temporal variance defined by the results of synoptic survey III (July 22–August 8, 2002) indicated that ammonia concentrations in the Kansas River sometimes varied daily by as much as 155 percent at a single site. Samples analyzed for densities of fecal coliform bacteria illustrated a seasonal, spatial, and temporal pattern slightly different from that of nutrients. Overall, the bacteria densities measured during the summer were larger than the densities measured in the winter. The only fecal coliform bacteria density to exceed the former State water-quality, single-sample criteria of 2,000 col/100 mL (colonies per 100 milliliters of water) was measured at 4,000 col/100 mL during synoptic III (summer 2002) on the main stem of the Kansas River at Kansas City. Temporal variability measured during synoptic survey III indicated up to a 263-percent difference in bacteria density over a 12-day period. Instantaneous loads of ammonia and bacteria were computed to determine primary inputs to the Kansas River and ammonia and bacteria decay rates in the river. The Oakland WWTF in Topeka was the largest contributor of both ammonia and bacteria on the basis of samples collected during the three synoptic surveys, except for fecal coliform bacteria collected during synoptic survey III when the DeSoto WWTF was discharging the largest concentration of bacteria. The ammonia assimilative process was about twice as effective during the summer synoptic survey than it was during the winter survey. Decay of fecal coliform bacteria density was less evident and appeared to have little seasonal effect on the basis of data collected for this report. The summer low-streamflow water-quality conditions were suitable for nitrification, algae that consume ammonia, and consequently, decaying organic matter that consume oxygen. The consumption of dissolved oxygen due to nitrification and decaying algae contributed to three measurements of dissolved oxygen that were less than the State of Kansas aquatic-life-support use criteria of 5.0 milligrams per liter. CE–QUAL–W2, a two-dimensional, hydrodynamic and water-quality model, was used to simulate ammonia and bacteria transport in the Kansas River from Topeka to Kansas City. The model was calibrated and verified using data from the three synoptic surveys. The calibrated model successfully simulated the hydrodynamics, water temperature, dissolved oxygen, ammonia, and fecal coliform bacteria in the Kansas River. Simulated in-stream ammonia concentrations were compared to measured concentrations upstream to downstream along the Kansas River. The simulated in-stream ammonia concentrations mostly overestimated the measured values for both winter and summer, with a few exceptions. Comparisons between measured and simulated in-stream ammonia concentrations indicated ammonia assimilation was simulated more accurately in the summer than during the winter. Four hypothetical simulations of varied effluent discharges from existing WWTFs and addition of a proposed WWTF near DeSoto were simulated to better understand future water-quality conditions in the Kansas River. Results indicated that ammonia and dissolved-oxygen concentrations in the Kansas River will decrease from the conditions observed during synoptic surveys II (February 25 through March 1, 2002) and III (July 22 through August 8, 2002) except near the proposed WWTF where concentrations of ammonia would be near or exceed criteria for waterborne species. Effects of the proposed WWTF on dissolved oxygen would result in concentrations less than the State of Kansas aquatic-life-support use criteria of 5.0 milligrams per liter for 1 to 2 miles downstream from either of the proposed sites.

Kansas↗
USGS2012

Analysis of trends in selected streamflow statistics for the Concho River Basin, Texas, 1916-2009

The Concho River Basin is part of the upper Colorado River Basin in west-central Texas. Monotonic trends in streamflow statistics during various time intervals from 1916-2009 were analyzed to determine whether substantial changes in selected streamflow statistics have occurred within the Concho River Basin. Two types of U.S. Geological Survey streamflow data comprise the foundational data for this report: (1) daily mean discharge (daily discharge) and (2) annual instantaneous peak discharge. Trend directions are reported for the following streamflow statistics: (1) annual mean daily discharge, (2) annual 1-day minimum discharge, (3) annual 7-day minimum discharge, (4) annual maximum daily discharge, and (5) annual instantaneous peak discharge. The South Concho, Middle Concho, and North Concho Rivers drain the upper part of the Concho River Basin. The North and South Concho Rivers converge in San Angelo, Tex., to form the Concho River. The Concho River flows east from San Angelo to its confluence with the Colorado River east of Paint Rock, Tex. The trend analyses principally focused on application of the nonparametric Kendall's Tau statistical test to detect monotonic trends (dependency) in streamflow with time; in other words, Kendall's Tau is a test of temporal independence of streamflow with time. A positive Tau indicates an upward monotonic streamflow trend; conversely, a negative Tau indicates a downward monotonic streamflow trend. Hence, the trend analysis reported here is limited to direction and not magnitude of streamflow change. Six U.S. Geological Survey streamflow-gaging stations were selected for analysis. Streamflow-gaging station 08128000 South Concho River at Christoval has downward trends for annual maximum daily discharge and annual instantaneous peak discharge for the combined period 1931-95, 2002-9. Streamflow-gaging station 08128400 Middle Concho River above Tankersley has downward trends for annual maximum daily discharge and annual instantaneous peak discharge for the combined period 1962-95, 2002-9. Streamflow-gaging station 08128500 Middle Concho River near Tankersley has no significant trends in the streamflow statistics considered for the period 1931-60. Streamflow-gaging station 08134000 North Concho River near Carlsbad has downward trends for annual mean daily discharge, annual 7-day minimum daily discharge, annual maximum daily discharge, and annual instantaneous peak discharge for the period 1925-2009. Streamflow-gaging stations 08136000 Concho River at San Angelo and 08136500 Concho River at Paint Rock have downward trends for 1916-2009 for all streamflow statistics calculated, but streamflow-gaging station 08136000 Concho River at San Angelo has an upward trend for annual maximum daily discharge during 1964-2009. The downward trends detected during 1916-2009 for the Concho River at San Angelo are not unexpected because of three reservoirs impounding and profoundly regulating streamflow.

Texas↗
USGS2013

Pilot study of natural attenuation of arsenic in well water discharged to the Little River above Lake Thunderbird, Norman, Oklahoma, 2012

The City of Norman, Oklahoma, wanted to augment its water supplies to meet the needs of an increasing population. Among the city’s potential water sources are city wells that produce water that exceeds the 10 micrograms per liter primary drinking-water standard for arsenic. The City of Norman was interested in investigating low-cost means of using natural attenuation to remove arsenic from well water and augment the water supply of Lake Thunderbird, the primary water source for the city. The U.S. Geological Survey, in cooperation with the City of Norman, conducted a preliminary investigation (pilot study) to determine if discharge of water from those wells into the Little River over a 12-day period would reduce arsenic concentrations through natural-attenuation processes. Water in the Little River flows into Lake Thunderbird, the principal water source for the city, so the discharged well water would improve the water balance of that reservoir. During this pilot study, 150–250 gallons per minute from each of six city wells were discharged to the Little River over a 12-day period. Water-quality samples were collected from the wells during discharge and from the river before, during, and after well discharges. Streambed-sediment samples were collected at nine sites in the river before and after the well-discharge period. Water discharge from the six wells added 0.3 kilogram per day of arsenic to the river at the nearest downstream streamflow-gaging station. Dissolved arsenic concentration in the Little River at the closest downstream sampling site from the wells increased from about 4 micrograms per liter to as much as 24 micrograms per liter. Base flow in the river increased by about 1.7 cubic feet per second at the nearest downstream streamflow-gaging station. Streamflow in the river was two-thirds of that expected from the amount of water discharged from the wells because of seepage to soils and evapotranspiration of well water along drainage ways to the river. Arsenic concentrations at the nearest downstream streamflow-gaging station were less than arsenic concentrations measured in many of the well-water samples during the well-pumping period. Arsenic concentrations, loads, and yields in the Little River generally decreased downstream from the closest streamflow-gaging station to the wells by 50 percent or more, indicating removal of about 0.25 kilogram or 0.53 pound per day of arsenic during base-flow conditions. Measured river-water arsenic concentrations near the confluence of the Little River with Lake Thunderbird were in compliance with the primary drinking-water standard. Arsenic concentrations measured at four downstream stations in the Little River also were less than established criteria set for protection of aquatic biota. After well discharges to the Little River were stopped, arsenic concentrations, loads, and yields in the river gradually decreased over 14 days to concentrations measured prior to the well-water discharges. Cumulative loads of arsenic discharged at the wells and the closest and farthest downstream streamflow-gaging stations indicated removal of about 2.5 kilograms of arsenic as well-water flowed to and down the river. Arsenic concentrations in streambed-sediment samples collected before and after the well-water discharges were not significantly different. Results of this pilot study indicate that using natural-attenuation processes to remove arsenic from water and supplement city water supplies may be a viable, relatively low-cost method for attenuating arsenic in well water and for augmenting the water supply of Lake Thunderbird.

Oklahoma↗
USGS2013

Groundwater contributions of flow, nitrate, and dissolved organic carbon to the lower San Joaquin River, California, 2006-08

The influence of groundwater on surface-water quality in the San Joaquin River, California, was examined for a 59-mile reach from the confluence with Salt Slough to Vernalis. The primary objective of this study was to quantify the rate of groundwater discharged to the lower San Joaquin River and the contribution of nitrate and dissolved organic carbon concentrations to the river. Multiple lines of evidence from four independent approaches were used to characterize groundwater contributions of nitrogen and dissolved organic carbon. Monitoring wells (in-stream and bank wells), streambed synoptic surveys (stream water and shallow groundwater), longitudinal profile surveys by boat (continuous water-quality parameters in the stream), and modeling (MODFLOW and VS2DH) provided a combination of temporal, spatial, quantitative, and qualitative evidence of groundwater contributions to the river and the associated quality. Monitoring wells in nested clusters in the streambed (in-stream wells) and on both banks (bank wells) along the river were monitored monthly from September 2006 to January 2009. Nitrate concentrations in the bank wells ranged from less than detection—that is, less than 0.01 milligrams per liter (mg/L) as nitrogen (N)—to approximately 13 mg/L as N. Nitrate was not detected at 17 of 26 monitoring wells during the study period. Dissolved organic carbon concentrations among monitoring wells were highly variable, but they generally ranged from 1 to 4 mg/L. In a previous study, 14 bank wells were sampled once in 1988 following their original installation. With few exceptions, specific conductivity and nitrate concentrations measured in this study were virtually identical to those measured 20 years ago. Streambed synoptic measurements were made by using a temporarily installed drive-point piezometer at 113 distinct transects across the stream during 4 sampling events. Nitrate concentrations exceeded the detection limit of 0.01 mg/L as N in 5 percent of groundwater samples collected from the in-stream wells as part of the synoptic surveys. Only 7 of the 113 cross-sectional transects had nitrate concentrations greater than 1 mg/L as N. In contrast, surface waters in the San Joaquin River tended to have nitrate concentrations in the 1–3 mg/L as N range. A zone of lower oxygen (less than 2 mg/L) in the streambed could limit nitrate contributions from regional groundwater flow because nitrate can be converted to nitrogen gas within this zone. Appreciable concentrations of ammonium (average concentration was 1.92 mg/L as N, and 95th percentile was 10.34 mg/L as N) in the shallow groundwater, believed to originate from anoxic mineralization of streambed sediments, could contribute nitrogen to the overlying stream as nitrate following in-stream nitrification, however. Dissolved organic carbon concentrations were highly variable in the shallow groundwater below the river (1 to 6 ft below streambed) and generally ranged between 1 and 5 mg/L, but had maximum concentrations in the 15–25 mg/L range. The longitudinal profile surveys were not particularly useful in identifying groundwater discharge areas. However, the longitudinal approach described in this report was useful as a baseline survey of measured water-quality parameters and for identifying tributary inflows that affect surface-water concentrations of nitrate. Results of the calibrated MODFLOW model indicated that the simulated groundwater discharge rate was approximately 1.0 cubic foot per second per mile (cfs/mi), and the predominant horizontal groundwater flow direction between the deep bank wells was westward beneath the river. The modeled (VS2DH) flux values (river gain versus river loss) were calculated for the irrigation and non-irrigation season, and these fluxes were an order of magnitude less than those from MODFLOW. During the irrigation season, the average river gain was 0.11 cfs/mi, and the average river loss was −0.05 cfs/mi. During the non-irrigation season, the average river gain was 0.10 cfs/mi, and the average river loss was -0.08 cfs/mi. Information on groundwater interactions and water quality collected for this study was used to estimate loads of nitrate and dissolved organic carbon from the groundwater to the San Joaquin River. Estimated loads of dissolved inorganic nitrogen and dissolved organic carbon were calculated by using concentrations measured during four streambed synoptic surveys and the estimated groundwater discharge rate to the San Joaquin River from MODFLOW of 1 cfs/mi. The estimated groundwater loads to the San Joaquin River for dissolved inorganic nitrogen and dissolved organic carbon were 300 and 350 kilograms per day, respectively. These loads represent 9 and 7 percent, respectively, of the estimated instantaneous surface-water loads for dissolved inorganic nitrogen and dissolved organic carbon at the most downstream site, Vernalis, measured during the four streambed synoptic surveys.

California↗