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USGS2004

Water flow and nutrient flux from five estuarine rivers along the southwest coast of the Everglades National Park, Florida, 1997-2001

Discharge and nutrient fluxes for five tidally affected streams were monitored and evaluated as a part of the U.S. Geological Survey Place-Based Studies Initiative and the U.S. Department of the Interior Critical Ecosystem Studies Initiative. Locations on Lostmans Creek, and Broad, Harney, Shark, and North Rivers were selected using the criterion that a large amount of the water that flows through Shark River Slough must pass these sites. Discharge and nutrient-concentration data collection started at the Broad, Harney, and Shark River stations in January 1997 and ended in early 2001. Discharge and nutrient-concentration data collection started at the Lostmans Creek and North River stations in April 1999 and ended in early 2001. Each station was equipped with a vertically oriented acoustic-velocity sensor, water-level pressure transducer, bottom water-temperature thermistor, and specific conductance four-electrode sensor. Data collected using a vessel-mounted acoustic discharge measurement system were used to calibrate regression models of the mean river velocities and the in-situ index velocities. Information from these stations, in conjunction with data from other ongoing studies, will help to determine environmental effects on the southwest coast estuaries as changes in water management of the Everglades National Park continue. Discharges from the Lostmans Creek, and Broad, Harney, Shark, and North River stations are influenced by semidiurnal tides, meteorological events, and surface- and ground-water inflow. Each of the five rivers is usually well mixed, having no greater than 500 microSiemens per centimeter at 25? Celsius difference in specific conductance from top to bottom during flood and ebb tides. Instantaneous flood discharges (water moving upstream) are typically of greater magnitude and shorter duration than instantaneous ebb discharges (water moving downstream). Instantaneous discharge data were filtered using a low-pass filter to remove predominant tidal frequencies, and the filtered data were used to compute daily mean and monthly mean residual discharges. Lostmans Creek, and Broad, Harney and Shark Rivers each contributed from 20 to 27 percent of the total measured discharge to the Gulf of Mexico, whereas North River contributed approximately 4 percent. The main discharge region of the Shark River Slough extends from as far north as Lostmans Creek to as far south as North River. North River discharge has similar response characteristics to the other four rivers measured, but with a lesser magnitude of discharge. Comparisons of monthly mean discharges from the Tamiami Canal flow control structures S-12-A, B, C, and D located on U.S. Highway 41 (Tamiami Trail) to the five station total monthly mean discharges indicate that the discharges from the five rivers are approximately 2 to 3 times the S-12-A, B, C, D discharges, and that the measured southwest coast discharge peaks lead the S-12-A, B, C, D discharge peaks by approximately 1 month. Residual total nitrogen and total phosphorus fluxes were estimated using linear regression models of discharge and flux. Monthly mean total nitrogen residual fluxes for the five southwest coast rivers ranged from approximately 0 to 390 short tons, whereas monthly mean total phosphorus residual fluxes ranged from approximately 0 to 6 short tons. Total nitrogen and total phosphorus residual fluxes at Lostmans Creek, and Broad, Harney, and Shark Rivers were similar in magnitude, each accounting for between 20 to 29 percent of the total measured residual flux. North River contributed between 3 to 4 percent of the total nitrogen and total phosphorus residual flux from the five rivers.

Florida↗

USGS2005

Water use and availability in the Woonasquatucket and Moshassuck River basins, north-central Rhode Island

The Woonasquatucket River Basin includes 51.0 square miles, and the Moshassuck River Basin includes 23.8 square miles in north-central Rhode Island. The study area comprises these two basins. The two basins border each other with the Moshassuck River Basin to the northeast of the Woonasquatucket River Basin. Seven towns are in the Woonasquatucket River Basin, and six towns are in the Moshassuck River Basin. To determine the water use and availability in the study area, water supply and discharge data were collected for these river basins for the 1995–99 period, and compared to estimated long-term water available. The study area is unique in the State of Rhode Island, because no withdrawals from major public suppliers were made during the study period. Withdrawals were, therefore, limited to self-supplied domestic use, two minor suppliers, and one self-supplied industrial user. Because no metered data were available, the summer water withdrawals were assumed to be the same as the estimates for the rest of the year. Seven major water suppliers distribute an average of 17.564 million gallons per day for use in the study area from sources outside of the study area. The withdrawals from minor water suppliers were 0.017 million gallons per day in the study area, all in the town of Smithfield in the Woonasquatucket River Basin. The remaining withdrawals in the study area were estimated to be 0.731 million gallons per day by self-supplied domestic, commercial, industrial, and agricultural users. Return flows in the study area included self-disposed water and disposal from permitted dischargers, including the Smithfield Sewage Treatment Plant. Return flows accounted for 4.116 million gallons per day in the study area. Most public-disposed water (15.195 million gallons per day) is collected by the Narragansett Bay Commission and is disposed outside of the basin in Narragansett Bay. The PART program, a computerized hydrograph-separation application, was used at one index stream-gaging station to determine water availability based on the 75th, 50th, and 25th percentiles of the total base flow, the base flow minus the 7-day, 10-year flow criteria, and the base flow minus the Aquatic Base Flow criteria. The index station selected was the Branch River at Forestdale, which is close to the study area and has a similar percentage of sand and gravel area. Water availability was estimated on the basis of baseflow contributions from sand and gravel deposits and till deposits at the index station. Flows were computed for June, July, August, and September 1957–2000, and a percentage of the total flow was determined to come from either sand and gravel deposits, or till, by using a regression equation. The base-flow contributions were converted to a flow per unit area at the station for the till and for the sand and gravel deposits and then applied to the deposits in the study area basins. These values were used to estimate the gross yield of base flow, as well as to subtract the two low flows (7-day, 10-year flow, and Aquatic Base Flow criteria). The results from the Branch River stream-gaging station were lowest in August at the 75th, 50th, and 25th percentile for total flow with either flow criteria subtracted. The estimated August gross yield at the 50th percentile from the Woonasquatucket River Basin was 12.94 million gallons per day, and 5.91 million gallons per day from the Moshassuck River Basin. A ratio was calculated that is equal to total withdrawals divided by water availability. Water-availability flow scenarios at the 75th, 50th, and 25th percentiles for the basins, which are based on total water available from base-flow contributions from till and sand and gravel deposits in the basins, were assessed. The ratios were the highest in July for the 50th percentile estimated gross yield minus Aquatic Base Flow (ABF) flow criteria, where withdrawals are close to the available water. Ratios are not presented if the available water is less than the flow criteria. The ratio of withdrawals to the July gross yield at the 50th percentile minus Aquatic Base Flow was 0.796 for the Woonasquatucket and 0.275 for the Moshassuck River Basin. A long-term hydrologic budget was calculated for the period of 1956–2000 for the Woonasquatucket River Basin and the period of 1964–2000 for the Moshassuck River Basin. The water withdrawals and return flows used in the budget were from 1995 through 1999. For the hydrologic budget, inflow was assumed to equal outflow and was about 120 million gallons per day in the Woonasquatucket River Basin and 56 million gallons per day in the Moshassuck River Basin. The estimated inflows from precipitation and water return flow were 97.3 and 2.7 percent, respectively, in the Woonasquatucket River Basin, and 98.3 and 1.7 percent, respectively, in the Moshassuck River Basin. The estimated outflows from evapotranspiration, streamflow, and water withdrawals were 43.4, 56.1, and 0.5 percent, respectively, in the Woonasquatucket River Basin, and 49.8, 50, and 0.2 percent, respectively, in the Moshassuck River Basin.

Rhode Island↗

USGS2005

Quantification and simulation of metal loading to the Upper Animas River, Eureka to Silverton, San Juan County, Colorado, September 1997 and August 1998

Drainage from abandoned and inactive mines and from naturally mineralized areas in the San Juan Mountains of southern Colorado contributes metals to the upper Animas River near Silverton, Colorado. Tracer-injection studies and associated synoptic sampling were performed along two reaches of the upper Animas River to develop detailed profiles of stream discharge and to locate and quantify sources of metal loading. One tracer-injection study was performed in September 1997 on the Animas River reach from Howardsville to Silverton, and a second study was performed in August 1998 on the stream reach from Eureka to Howardsville. Drainage in the upper Animas River study reaches contributed aluminum, calcium, copper, iron, magnesium, manganese, sulfate, and zinc to the surface-water system in 1997 and 1998. Colloidal aluminum, dissolved copper, and dissolved zinc were attenuated through a braided stream reach downstream from Eureka. Instream dissolved copper concentrations were lower than the State of Colorado acute and chronic toxicity standards downstream from the braided reach to Silverton. Dissolved iron load and concentrations increased downstream from Howardsville and Arrastra Gulch, and colloidal iron remained constant at low concentrations downstream from Howardsville. Instream sulfate concentrations were lower than the U.S. Environmental Protection Agency's secondary drinking-water standard of 250 milligrams per liter throughout the two study reaches. Elevated zinc concentrations are the primary concern for aquatic life in the upper Animas River. In the 1998 Eureka to Howardsville study, instream dissolved zinc load increased downstream from the Forest Queen mine, the Kittimack tailings, and Howardsville. In the 1997 Howardsville to Silverton study, there were four primary areas where zinc load increased. First, was the increase downstream from Howardsville and abandoned mining sites downstream from the Cunningham Gulch confluence, which also was measured during the 1998 study. The second affected reach was downstream from Arrastra Gulch, where the increase in zinc load seems related to a series of right-bank inflows with low pH Quantification and Simulation of Metal Loading to the Upper Animas River, Eureka to Silverton, San Juan County, Colorado, September 1997 and August 1998By Suzanne S. Paschke, Briant A. Kimball, and Robert L. Runkeland elevated dissolved zinc concentrations. A third increase in zinc load occurred 6,100 meters downstream from the 1997 injection site and may have been from ground-water discharge with elevated zinc concentrations based on mass-loading graphs and the lack of visible inflow in the reach. A fourth but lesser dissolved zinc load increase occurred downstream from tailings near the Lackawanna Mill. Results of the tracer-injection studies and the effects of potential remediation were analyzed using the one- dimensional stream-transport computer code OTIS. Based on simulation results, instream zinc concentrations downstream from the Kittimack tailings to upstream from Arrastra Gulch would approach 0.16 milligram per liter (the upper limit of acute toxicity for some sensitive aquatic species) if zinc inflow concentrations were reduced by 75 percent in the stream reaches receiving inflow from the Forest Queen mine, the Kittimack tailings, and downstream from Howardsville. However, simulated zinc concentrations downstream from Arrastra Gulch were higher than approximately 0.30 milligram per liter due to numerous visible inflows and assumed ground-water discharge with elevated zinc concentrations in the lower part of the study reach. Remediation of discrete visible inflows seems a viable approach to reducing zinc inflow loads to the upper Animas River. Remediation downstream from Arrastra Gulch is more complicated because ground-water discharge with elevated zinc concentrations seems to contribute to the instream zinc load.

Colorado↗

USGS2005

Estimating the magnitude and frequency of floods for streams in west-central Florida, 2001

Flood discharges were estimated for recurrence intervals of 2, 5, 10, 25, 50, 100, 200, and 500 years for 94 streamflow stations in west-central Florida. Most of the stations are located within the 10,000 square-mile, 16-county area that forms the Southwest Florida Water Management District. All stations had at least 10 years of homogeneous record, and none have flood discharges that are significantly affected by regulation or urbanization. Guidelines established by the U.S. Water Resources Council in Bulletin 17B were used to estimate flood discharges from gaging station records. Multiple linear regression analysis was then used to mathematically relate estimates of flood discharge for selected recurrence intervals to explanatory basin characteristics. Contributing drainage area, channel slope, and the percent of total drainage area covered by lakes (percent lake area) were the basin characteristics that provided the best regression estimates. The study area was subdivided into four geographic regions to further refine the regression equations. Region 1 at the northern end of the study area includes large rivers that are characteristic of the rolling karst terrain of northern Florida. Only a small part of Region 1 lies within the boundaries of the Southwest Florida Water Management District. Contributing drainage area and percent lake area were the most statistically significant basin characteristics in Region 1; the prediction error of the regression equations varied with the recurrence interval and ranged from 57 to 69 percent. In the three other regions of the study area, contributing drainage area, channel slope, and percent lake area were the most statistically significant basin characteristics, and are the three characteristics that can be used to best estimate the magnitude and frequency of floods on most streams within the Southwest Florida Water Management District. The Withlacoochee River Basin dominates Region 2; the prediction error of the regression models in the region ranged from 65 to 68 percent. The basins that drain into the northern part of Tampa Bay and the upper reaches of the Peace River Basin are in Region 3, which had prediction errors ranging from 54 to 74 percent. Region 4, at the southern end of the study area, had prediction errors that ranged from 40 to 56 percent. Estimates of flood discharge become more accurate as longer periods of record are used for analyses; results of this study should be used in lieu of results from earlier U.S. Geological Survey studies of flood magnitude and frequency in west-central Florida. A comparison of current results with earlier studies indicates that use of a longer period of record with additional high-water events produces substantially higher flood-discharge estimates for many gaging stations. Another comparison indicates that the use of a computed, generalized skew in a previous study in 1979 tended to overestimate flood discharges.

Scientific Investigations Report↗

USGS2007

Nutrient and Suspended-Sediment Trends in the Missouri River Basin, 1993-2003

Trends in streamflow and concentration of total nitrogen, nitrite plus nitrate, ammonia, total phosphorus, orthophosphorus, and suspended sediment were determined for the period from 1993 to 2003 at selected stream sites in the Missouri River Basin. Flow-adjusted trends in concentration (the trends that would have occurred in the absence of natural changes in streamflow) and non-flow-adjusted trends in concentration (the overall trends resulting from natural and human factors) were determined. In the analysis of flow-adjusted trends, the removal of streamflow as a variable affecting concentration allowed trends caused by other factors such as implementation of best management practices to be identified. In the analysis of non-flow-adjusted trends, the inclusion of any and all factors affecting concentration allowed trends affecting aquatic ecosystems and the status of streams relative to water-quality standards to be identified. Relations between the flow-adjusted and non-flow-adjusted trends and changes in streamflow, nutrient sources, ground-water inputs, and implementation of management practices also were examined to determine the major factors affecting the trends. From 1993 to 2003, widespread downward trends in streamflow indicated that drought conditions from about 2000 to 2003 led to decreasing streamflow throughout much of the Missouri River Basin. Flow-adjusted trends in nitrite plus nitrate and ammonia concentrations were split nearly equally between nonsignificant and downward; at about one-half of the sites, management practices likely were contributing to measurable decreases in concentrations of nitrite plus nitrate and ammonia. Management practices had less of an effect on concentrations of total nitrogen; downward flow-adjusted trends in total nitrogen concentrations occurred at only 2 of 19 sites. The pattern of non-flow-adjusted trends in nitrite plus nitrate concentrations was similar to the pattern of flow-adjusted trends; non-flow-adjusted trends were split nearly equally between nonsignificant and downward. A substantial source of nitrite plus nitrate to these streams likely was ground water; because of the time required for ground water to travel to streams, there may have been a lag time between the implementation of some pollution-control strategies and improvement in stream quality, contributing to the nonsignificant trends in nitrite plus nitrate. There were more sites with downward non-flow-adjusted trends than flow-adjusted trends in both ammonia and total nitrogen concentrations, possibly a result of decreased surface runoff from nonpoint sources associated with the downward trends in streamflow. No strong relations between any of the nitrogen trends and changes in nutrient sources or landscape characteristics were identified. Although there were very few upward trends in nitrogen from 1993 to 2003, there were upward flow-adjusted trends in total phosphorus concentrations at nearly one-half of the sites. At these sites, not only were pollution-control strategies not contributing to measurable decreases in total phosphorus concentrations, there was likely an increase in phosphorus loading on the land surface. There were fewer upward non-flow-adjusted than flow-adjusted trends in total phosphorus concentrations; at the majority of sites, overall total phosphorus concentrations did not change significantly during this period. The preponderance of upward flow-adjusted trends and nonsignificant non-flow-adjusted trends indicates that in some areas of the Missouri River Basin, overall concentrations of total phosphorus would have been higher without the decrease in streamflow and the associated decrease in surface runoff during the study period. During the study period, phosphorus loads from fertilizer generally increased at over one-half of the sites in the basin. Upward flow-adjusted trends were related to increasing fertilizer use in the upstream drainage area, particularly in the 10 percent

Scientific Investigations Report↗

USGS2006

Synoptic Discharge, Water-Property, and pH Measurements for Muddy River Springs Area and Muddy River, Nevada, February 7, 2001

On February 7, 2001, synoptic discharge measurements at selected sites along the Muddy River in Nevada, indicated three trends in discharge resulting from contributions of spring discharge, influences of diversionary flow, and contributions from shallow ground water. Effects from diversionary and tributary flow were local in nature and resulted in a net gain of 2.6 cubic feet per second throughout the measured reach. The minor increase in discharge may be the result of contributions from ground-water flow and measurement error. Comparison of 1963 and 2001 discharge measurements within the Muddy River Springs area indicated that discharge rates and trends from these source waters were similar. Along the mainstem of the Muddy River, water-temperature measurements indicated a net decrease of 8.8 degrees Celsius. Water samples collected and analyzed for specific conductance indicated a net increase of 390 microsiemens per centimeter at 25 degrees Celsius, whereas pH measurements remained relatively constant.

Scientific Investigations Report↗

USGS2008

Simulations of Ground-Water Flow, Transport, Age, and Particle Tracking near York, Nebraska, for a Study of Transport of Anthropogenic and Natural Contaminants (TANC) to Public-Supply Wells

Contamination of public-supply wells has resulted in public-health threats and negative economic effects for communities that must treat contaminated water or find alternative water supplies. To investigate factors controlling vulnerability of public-supply wells to anthropogenic and natural contaminants using consistent and systematic data collected in a variety of principal aquifer settings in the United States, a study of Transport of Anthropogenic and Natural Contaminants to public-supply wells was begun in 2001 as part of the U.S. Geological Survey National Water-Quality Assessment Program. The area simulated by the ground-water flow model described in this report was selected for a study of processes influencing contaminant distribution and transport along the direction of ground-water flow towards a public-supply well in southeastern York, Nebraska. Ground-water flow is simulated for a 60-year period from September 1, 1944, to August 31, 2004. Steady-state conditions are simulated prior to September 1, 1944, and represent conditions prior to use of ground water for irrigation. Irrigation, municipal, and industrial wells were simulated using the Multi-Node Well package of the modular three-dimensional ground-water flow model code, MODFLOW-2000, which allows simulation of flow and solutes through wells that are simulated in multiple nodes or layers. Ground-water flow, age, and transport of selected tracers were simulated using the Ground-Water Transport process of MODFLOW-2000. Simulated ground-water age was compared to interpreted ground-water age in six monitoring wells in the unconfined aquifer. The tracer chlorofluorocarbon-11 was simulated directly using Ground-Water Transport for comparison with concentrations measured in six monitoring wells and one public supply well screened in the upper confined aquifer. Three alternative model simulations indicate that simulation results are highly sensitive to the distribution of multilayer well bores where leakage can occur and that the calibrated model resulted in smaller differences than the alternative models between simulated and interpreted ages and measured tracer concentrations in most, but not all, wells. Results of the first alternative model indicate that the distribution of young water in the upper confined aquifer is substantially different when well-bore leakage at known abandoned wells and test holes is removed from the model. In the second alternative model, simulated age near the bottom of the unconfined aquifer was younger than interpreted ages and simulated chlorofluorocarbon-11 concentrations in the upper confined aquifer were zero in five out of six wells because the conventional Well Package fails to account for flow between model layers though well bores. The third alternative model produced differences between simulated and interpreted ground-water ages and measured chlorofluorocarbon-11 concentrations that were comparable to the calibrated model. However, simulated hydraulic heads deviated from measured hydraulic heads by a greater amount than for the calibrated model. Even so, because the third alternative model simulates steady-state flow, additional analysis was possible using steady-state particle tracking to assess the contributing recharge area to a public supply well selected for analysis of factors contributing to well vulnerability. Results from particle-tracking software (MODPATH) using the third alternative model indicates that the contributing recharge area of the study public-supply well is a composite of elongated, seemingly isolated areas associated with wells that are screened in multiple aquifers. The simulated age distribution of particles at the study public-supply well indicates that all water younger than 58 years travels through well bores of wells screened in multiple aquifers. The age distribution from the steady-state model using MODPATH estimates the youngest 7 percent of the water to have a flow-weighted mean age

Scientific Investigations Report↗

USGS2009

Spatially referenced statistical assessment of dissolved-solids load sources and transport in streams of the Upper Colorado River Basin

The Upper Colorado River Basin (UCRB) discharges more than 6 million tons of dissolved solids annually, about 40 to 45 percent of which are attributed to agricultural activities. The U.S. Department of the Interior estimates economic damages related to salinity in excess of $330 million annually in the Colorado River Basin. Salinity in the UCRB, as measured by dissolved-solids load and concentration, has been studied extensively during the past century. Over this period, a solid conceptual understanding of the sources and transport mechanisms of dissolved solids in the basin has been developed. This conceptual understanding was incorporated into the U.S. Geological Survey Spatially Referenced Regressions on Watershed Attributes (SPARROW) surface-water quality model to examine statistically the dissolved-solids supply and transport within the UCRB. Geologic and agricultural sources of dissolved solids in the UCRB were defined and represented in the model. On the basis of climatic and hydrologic conditions along with data availability, water year 1991 was selected for examination with SPARROW. Dissolved-solids loads for 218 monitoring sites were used to calibrate a dissolved-solids SPARROW model for the UCRB. The calibrated model generally captures the transport mechanisms that deliver dissolved solids to streams of the UCRB as evidenced by R2 and yield R2 values of 0.98 and 0.71, respectively. Model prediction error is approximated at 51 percent. Model results indicate that of the seven geologic source groups, the high-yield sedimentary Mesozoic rocks have the largest yield of dissolved solids, about 41.9 tons per square mile (tons/mi2). Irrigated sedimentary-clastic Mesozoic lands have an estimated yield of 1,180 tons/mi2, and irrigated sedimentary-clastic Tertiary lands have an estimated yield of 662 tons/mi2. Coefficients estimated for the seven landscape transport characteristics seem to agree well with the conceptual understanding of the role they play in the delivery of dissolved solids to streams in the UCRB. Predictions of dissolved-solids loads were generated for more than 10,000 stream reaches of the stream network defined in the UCRB. From these estimates, the downstream accumulation of dissolved solids, including natural and agricultural components, were examined in selected rivers. Contributions from each of the 11 dissolved-solids sources were also examined at select locations in the Grand, Green, and San Juan Divisions of the UCRB. At the downstream boundary of the UCRB, the Colorado River at Lees Ferry, Arizona, monitoring site, the dissolved-solids contribution of irrigated agricultural lands and natural sources were about 45 and 57 percent, respectively. Finally, model predictions, including the contributions of natural and agricultural sources for selected locations in the UCRB, were compared with results from two previous studies.

Arizona, Colorado, Idaho, New Mexico, Utah, Wyomin↗

USGS2011

Application of a watershed model (HSPF) for evaluating sources and transport of pathogen indicators in the Chino Basin drainage area, San Bernardino County, California

A watershed model using Hydrologic Simulation Program-FORTRAN (HSPF) was developed for the urbanized Chino Basin in southern California to simulate the transport of pathogen indicator bacteria, evaluate the flow-component and land-use contributions to bacteria contamination and water-quality degradation throughout the basin, and develop a better understanding of the potential effects of climate and land-use change on water quality. The calibration of the model for indicator bacteria was supported by historical data collected before this study and by samples collected by the U.S. Geological Survey from targeted land-use areas during storms in water-year 2004. The model was successfully calibrated for streamflow at 5 gage locations representing the Chino Creek and Mill Creek drainages. Although representing pathogens as dissolved constituents limits the model's ability to simulate the transport of pathogen indicator bacteria, the bacteria concentrations measured over the period 1998-2004 were well represented by the simulated concentrations for most locations. Hourly concentrations were more difficult to predict because of high variability in measured bacteria concentrations. In general, model simulations indicated that the residential and commercial land uses were the dominant sources for most of the pathogen indicator bacteria during low streamflows. However, simulations indicated that land used for intensive livestock (dairies and feedlots) and mixed agriculture contributed the most bacteria during storms. The calibrated model was used to evaluate how various land use, air temperature, and precipitation scenarios would affect flow and transport of bacteria. Results indicated that snow pack formation and melt were sensitive to changes in air temperature in the northern, mountainous part of the Chino Basin, causing the timing and magnitude of streamflow to shift in the natural drainages and impact the urbanized areas of the central Chino Basin. The relation between bacteria concentrations and air temperature was more complicated, and did not substantially affect the quality of water discharging from the Chino Basin into the Santa Ana River. Changes in precipitation had a greater basin-wide affect on bacteria concentrations than changes in air temperature, and varied according to location. Drainages representing natural conditions had a decrease in bacteria concentrations in correlation with an increase in precipitation, whereas drainages in the central and southern part of the Chino Basin had an increase in bacteria concentrations. Drier climate conditions tended to result in higher sensitivity of simulated bacteria concentrations to changes in precipitation. Simulated bacteria concentrations in wetter climates were usually less sensitive to changes in precipitation because bacteria transport becomes more dependent on the land-use specified bacteria loading rates and the storage limits. Bacteria contamination from impervious-area runoff is affected to a greater degree by drier climates, whereas contamination from pervious-area runoff is affected to a greater degree by wetter climates. Model results indicated that the relation between precipitation, runoff, and bacteria contamination is complicated because after the initial bacteria washoff and transport from the land surfaces during the beginning of a storm period, subsequent runoff has fewer bacteria available for washoff, which then dilutes the concentrations of bacteria in the downstream reach. It was illustrated that pathogen indicator bacteria transport depends most significantly on the relation of imperviousness to runoff, which controls the frequency, and often the magnitude, of transport, and on the contribution of higher bacteria loading rates used for pervious land areas, especially intensive feedlots, to the infrequent, but very high, peaks of bacteria contamination. The indicator bacteria transport model for the Chino Basin was based on the assumption that no

California↗

USGS2010

Analysis of the Shallow Groundwater Flow System at Fire Island National Seashore, Suffolk County, New York

Fire Island National Seashore (FIIS) occupies 42 kilometers of the barrier island for which it is named that lies off the southern shore of Suffolk County, N.Y. Freshwater in the highly permeable, sandy aquifer underlying Fire Island is bounded laterally by marine surface waters and at depth by saline groundwater. Interspersed throughout FIIS are 17 pre-existing residential communities that in summer months greatly increase in population through the arrival of summer residents and vacationers; in addition, the National Park Service (NPS) has established several facilities on the island to accommodate visitors to FIIS. The 2.2 million people estimated by the NPS to visit Fire Island annually impact groundwater quality through the release of waste-derived contaminants, such as nutrients, pathogens, and organic compounds, into the environment. Waste-contaminated groundwater can move through the aquifer and threaten the ecological health of the adjacent back-barrier estuaries to which much of the groundwater ultimately discharges. In 2004, the U.S. Geological Survey (USGS), in cooperation with the NPS, began a 3-year investigation to (1) collect groundwater levels and water-quality (nutrient) samples, (2) develop a three-dimensional model of the shallow (water-table) aquifer system and adjacent marine surface waters, and (3) calculate nitrogen loads in simulated groundwater discharges from the aquifer to back-barrier estuaries and the ocean. The hydrogeology of the shallow aquifer system was characterized from the results of exploratory drilling, geophysical surveying, water-level monitoring, and water-quality sampling. The investigation focused on four areas-the communities of Kismet and Robbins Rest, the NPS Visitor Center at Watch Hill, and the undeveloped Otis Pike Fire Island High Dune Wilderness. Thirty-five observation wells were installed within FIIS to characterize subsurface hydrogeology and establish a water-table monitoring network in the four study areas. A variable-density model of the shallow aquifer system and adjacent marine surface waters was developed to simulate groundwater flow patterns and rates. Nitrogen loads from the shallow aquifer system were calculated from representative total nitrogen (TN) concentrations and simulated groundwater discharges to back-barrier estuaries and the ocean. The model simulates groundwater directions, velocities, and discharge rates under 2005 mean annual conditions. Groundwater budgets were developed for recharge areas of similar land use that contribute freshwater to back-barrier estuaries, the ocean, and subsea-discharge zones. Total freshwater discharge from the shallow aquifer system is about 43,500 cubic meters per day (m3/d) (79.8 percent) to back-barrier estuaries and about 10,200 m3/d (18.7 percent) to the ocean; about 836 m3/d (1.5 percent) may exit the system as subsea underflow. The total contribution of fresh groundwater to shoreline discharge zones amounts to about 53,700 m3/d (98.5 percent). The median age of freshwater discharged to back-barrier estuaries and the ocean was 3.4 years, and the 95th-percentile age was 20 years. The TN concentrations and loads under 2005 mean annual conditions for areas that contribute fresh groundwater to back-barrier estuaries and the ocean were calculated for the principal land uses on Fire Island. The overall TN load from the shallow aquifer system to shoreline discharge zones is about 16,200 kilograms per year (kg/yr) (82.2 percent) to back-barrier estuaries and about 3,500 kg/yr (17.8 percent) to the ocean. The overall TN load to marine surface waters amounts to about 19,700 kg/yr-roughly 6 percent of the annual TN load from shallow groundwater entering the South Shore Estuary Reserve (SSER) from the Suffolk County mainland, which is about 345,000 kg/yr. In contrast to the TN load from shallow groundwater for the SSER watershed, which annually yields about 353 kilograms per square kilometer (kg/km2), the overall TN loa

Scientific Investigations Report↗

USGS2010

Development of an Environmental Flow Framework for the McKenzie River Basin, Oregon

The McKenzie River is a tributary to the Willamette River in northwestern Oregon. The McKenzie River is approximately 90 miles in length and has a drainage area of approximately 1,300 square miles. Two major flood control dams, a hydropower dam complex, and two hydropower canals significantly alter streamflows in the river. The structures reduce the magnitude and frequency of large and small floods while increasing the annual 7-day minimum streamflows. Stream temperatures also have been altered by the dams and other anthropogenic factors, such as the removal of riparian vegetation and channel simplification. Flow releases from one of the flood control dams are cooler in the summer and warmer in the fall in comparison to unregulated flow conditions before the dam was constructed. In 2006, the Oregon Department of Environmental Quality listed a total of 112.4, 6.3, and 55.7 miles of the McKenzie River basin mainstem and tributary stream reaches as thermally impaired for salmonid rearing, salmonid spawning, and bull trout, respectively. The analyses in this report, along with previous studies, indicate that dams have altered downstream channel morphology and ecologic communities. In addition to reducing the magnitude and frequency of floods, dams have diminished sediment transport by trapping bed material. Other anthropogenic factors, such as bank stabilization, highway construction, and reductions of in-channel wood, also have contributed to the loss of riparian habitat. A comparison of aerial photography taken in 1939 and 2005 showed substantial decreases in secondary channels, gravel bars, and channel sinuosity, particularly along the lower alluvial reaches of the McKenzie River. In addition, bed armoring and incision may contribute to habitat degradation, although further study is needed to determine the extent of these processes. Peak streamflow reduction has led to vegetation colonization and stabilization of formerly active bar surfaces. The large flood control dams on Blue River and South Fork McKenzie River likely have had the greatest effect on downstream habitats because these sediment and flood-rich tributaries historically contributed a disproportionate volume of bed material, wood, and peak flows in comparison with the spring-fed tributaries of the upper McKenzie River basin. The ecological effects of the dams were examined by focusing on nine exemplar aquatic and terrestrial species, including spring Chinook salmon, bull trout, Oregon chub, Pacific and western brook lamprey, red-legged frog, western pond turtle, alder, and cottonwood. The changes caused by the dams to streamflow hydrograph affect all these and other species in complex ways, although a few commonalities are apparent. A loss of channel complexity in the McKenzie River basin, which is associated with the reduction in flood events and widespread channel stabilization, is the primary factor related to the observed population declines for all nine exemplar species. The dams also have caused direct ecological effects by blocking access to habitat, changing the amount and timing of available critical habitat, and changing water temperature during important seasons for different life stages.

Scientific Investigations Report↗

USGS2010

A Geochemical Mass-Balance Method for Base-Flow Separation, Upper Hillsborough River Watershed, West-Central Florida, 2003-2005 and 2009

Geochemical mass-balance (GMB) and conductivity mass-balance (CMB) methods for hydrograph separation were used to determine the contribution of base flow to total stormflow at two sites in the upper Hillsborough River watershed in west-central Florida from 2003-2005 and at one site in 2009. The chemical and isotopic composition of streamflow and precipitation was measured during selected local and frontal low- and high-intensity storm events and compared to the geochemical and isotopic composition of groundwater. Input for the GMB method included cation, anion, and stable isotope concentrations of surface water and groundwater, whereas input for the CMB method included continuous or point-sample measurement of specific conductance. The surface water is a calcium-bicarbonate type water, which closely resembles groundwater geochemically, indicating that much of the surface water in the upper Hillsborough River basin is derived from local groundwater discharge. This discharge into the Hillsborough River at State Road 39 and at Hillsborough River State Park becomes diluted by precipitation and runoff during the wet season, but retains the calcium-bicarbonate characteristics of Upper Floridan aquifer water. Field conditions limited the application of the GMB method to low-intensity storms but the CMB method was applied to both low-intensity and high-intensity storms. The average contribution of base flow to total discharge for all storms ranged from 31 to 100 percent, whereas the contribution of base flow to total discharge during peak discharge periods ranged from less than 10 percent to 100 percent. Although calcium, magnesium, and silica were consistent markers of Upper Floridan aquifer chemistry, their use in calculating base flow by the GMB method was limited because the frequency of point data collected in this study was not sufficient to capture the complete hydrograph from pre-event base-flow to post-event base-flow concentrations. In this study, pre-event water represented somewhat diluted groundwater. Streamflow conductivity integrates the concentrations of the major ions, and the logistics of acquiring specific conductance at frequent time intervals are less complicated than data collection, sample processing, shipment, and analysis of water samples in a laboratory. The acquisition of continuous specific conductance data reduces uncertainty associated with less-frequently collected geochemical point data.

Scientific Investigations Report↗

USGS2011

Hydrogeology and water quality of the Floridan aquifer system and effects of Lower Floridan aquifer pumping on the Upper Floridan aquifer at Fort Stewart, Georgia

Test drilling, field investigations, and digital modeling were completed at Fort Stewart, GA, during 2009?2010, to assess the geologic, hydraulic, and water-quality characteristics of the Floridan aquifer system and evaluate the effect of Lower Floridan aquifer (LFA) pumping on the Upper Floridan aquifer (UFA). This work was performed pursuant to the Georgia Environmental Protection Division interim permitting strategy for new wells completed in the LFA that requires simulation to (1) quantify pumping-induced aquifer leakage from the UFA to LFA, and (2) identify the equivalent rate of UFA pumping that would produce the same maximum drawdown in the UFA that anticipated pumping from LFA well would induce. Field investigation activities included (1) constructing a 1,300-foot (ft) test boring and well completed in the LFA (well 33P028), (2) constructing an observation well in the UFA (well 33P029), (3) collecting drill cuttings and borehole geophysical logs, (4) collecting core samples for analysis of vertical hydraulic conductivity and porosity, (5) conducting flowmeter and packer tests in the open borehole within the UFA and LFA, (6) collecting depth-integrated water samples to assess basic ionic chemistry of various water-bearing zones, and (7) conducting aquifer tests in new LFA and UFA wells to determine hydraulic properties and assess interaquifer leakage. Using data collected at the site and in nearby areas, model simulation was used to assess the effects of LFA pumping on the UFA. Borehole-geophysical and flowmeter data indicate the LFA at Fort Stewart consists of limestone and dolomitic limestone between depths of 912 and 1,250 ft. Flowmeter data indicate the presence of three permeable zones at depth intervals of 912-947, 1,090-1,139, and 1,211?1,250 ft. LFA well 33P028 received 50 percent of the pumped volume from the uppermost permeable zone, and about 18 and 32 percent of the pumped volume from the middle and lowest permeable zones, respectively. Chemical constituent concentrations increased with depth, and water from all permeable zones contained sulfate at concentrations that exceeded the U.S. Environmental Protection Agency secondary maximum contaminant level of 250 milligrams per liter. A 72-hour aquifer test pumped LFA well 33P028 at 740 gallons per minute (gal/min), producing about 39 ft of drawdown in the pumped well and about 0.4 foot in nearby UFA well 33P029. Simulation using the U.S. Geological Survey finite-difference code MODFLOW was used to determine long-term, steady-state flow in the Floridan aquifer system, assuming the LFA well was pumped continuously at a rate of 740 gal/min. Simulated steady-state drawdown in the LFA was identical to that observed in pumped LFA well 33P028 at the end of the 72-hour test, with values larger than 1 ft extending 4.4 square miles symmetrically around the pumped well. Simulated steady-state drawdown in the UFA resulting from pumping in LFA well 33P028 exceeded 1 ft within a 1.4-square-mile circular area, and maximum drawdown in the UFA was 1.1 ft. Leakage from the UFA through the Lower Floridan confining unit contributed about 98 percent of the water to the well; lateral flow from specified-head model boundaries contributed about 2 percent. About 80 percent of the water supplied to LFA well 33P028 originated from within 1 mile of the well, and 49 percent was derived from within 0.5 mile of the well. Vertical hydraulic gradients and vertical leakage are progressively higher near the LFA pumped well which results in a correspondingly higher contribution of water from the UFA to the pumped well at distances closer to the pumped well. Simulated pumping-induced interaquifer leakage from the UFA to the LFA totaled 725 gal/min (1.04 million gallons per day), whereas simulated pumping at 205 gal/min (0.3 million gallons per day) from UFA well 33P029 produced the equivalent maximum drawdown as pumping LFA well 33P028 at 740 gal/min during the aquifer test. This equivalent pumpin

Georgia↗

USGS2011

Status and understanding of groundwater quality in the San Diego Drainages Hydrogeologic Province, 2004: California GAMA Priority Basin Project

Groundwater quality in the approximately 3,900-square-mile (mi 2 ) San Diego Drainages Hydrogeologic Province (hereinafter San Diego) study unit was investigated from May through July 2004 as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The study unit is located in southwestern California in the counties of San Diego, Riverside, and Orange. The GAMA Priority Basin Project is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory. The GAMA San Diego study was designed to provide a statistically robust assessment of untreated-groundwater quality within the primary aquifer systems. The assessment is based on water-quality and ancillary data collected by the USGS from 58 wells in 2004 and water-quality data from the California Department of Public Health (CDPH) database. The primary aquifer systems (hereinafter referred to as the primary aquifers) were defined by the depth interval of the wells listed in the California Department of Public Health (CDPH) database for the San Diego study unit. The San Diego study unit consisted of four study areas: Temecula Valley (140 mi 2 ), Warner Valley (34 mi 2 ), Alluvial Basins (166 mi 2 ), and Hard Rock (850 mi 2 ). The quality of groundwater in shallow or deep water-bearing zones may differ from that in the primary aquifers. For example, shallow groundwater may be more vulnerable to surficial contamination than groundwater in deep water-bearing zones. This study had two components: the status assessment and the understanding assessment. The first component of this study-the status assessment of the current quality of the groundwater resource-was assessed by using data from samples analyzed for volatile organic compounds (VOC), pesticides, and naturally occurring inorganic constituents, such as major ions and trace elements. The status assessment is intended to characterize the quality of groundwater resources within the primary aquifers of the San Diego study unit, not the treated drinking water delivered to consumers by water purveyors. The second component of this study-the understanding assessment-identified the natural and human factors that affect groundwater quality by evaluating land use, well construction, and geochemical conditions of the aquifer. Results from these evaluations were used to help explain the occurrence and distribution of selected constituents in the study unit. Relative-concentrations (sample concentration divided by benchmark concentration) were used as the primary metric for relating concentrations of constituents in groundwater samples to water-quality benchmarks for those constituents that have Federal and (or) California benchmarks. For organic and special-interest constituents, relative-concentrations were classified as high (> 1.0), moderate (> 0.1 and ≤1.0), and low (≤0.1). For inorganic constituents, relative concentrations were classified as high (> 1.0), moderate (> 0.5 and ≤1.0), and low (≤0.5). Grid-based and spatially weighted approaches were then used to evaluate the proportion of the primary aquifers (aquifer-scale proportions) with high, moderate, and low relative-concentrations for individual compounds and classes of constituents. One or more of the inorganic constituents with health-based benchmarks were high (relative to those benchmarks) in 17.6 percent of the primary aquifers in the Temecula Valley, Warner Valley, and Alluvial Basins study areas (hereinafter also collectively referred to as the Alluvial Fill study areas because they are composed of alluvial fill aquifers), and in 25.0 percent of the Hard Rock study area. Inorganic constituents with health-based benchmarks that were frequently detected at high relative-concentrations included vanadium (V), arsenic (As), and boron (B). Vanadium and As concentrations were not significantly correlated to either urban or agricultural land use indicating natural sources as the primary contributors of these constituents to groundwater. The positive correlation of B concentration to urban land-use was significant which indicates that anthropogenic activities are a contributing source of B to groundwater. The correlation of V, As and B concentrations to pH was positive, indicating that in alkaline groundwater these constituents are being desorbed from, or being inhibited from adsorbing to, particle surfaces. Inorganic constituents with aesthetic benchmarks that were detected at high relative-concentrations include manganese (Mn), iron (Fe), and total dissolved solids (TDS). In the Alluvial Fill study areas, Mn and TDS were detected at high relative-concentrations in 13.7 percent of the primary aquifers, and Fe in 6.9 percent. In the Hard Rock study area, Mn was detected at high relative-concentrations in 33.3 percent of the primary aquifers, and TDS in 16.7 percent; Fe was not detected at high relative-concentrations. Total dissolved solids concentrations were significantly correlated to agricultural land use suggesting that agricultural practices are a contributing source of TDS to groundwater. Manganese and Fe concentrations were highest in groundwater with low dissolved oxygen and pH indicating that the reductive dissolution of oxyhydroxides may be an important mechanism for the mobilization of Mn and Fe in groundwater. TDS concentrations were highest in shallow wells and in modern (< 50 yrs) groundwater which indicates anthropogenic activities as a source of TDS concentrations in groundwater. The relative-concentrations of organic constituents with health-based benchmarks were high in 3.0 percent of the primary aquifers in the Alluvial Fill study areas. A single detection in the Alluvial Basins study area of the discontinued gasoline oxygenate methyl tert-butyl ether (MTBE) was the only organic constituent detected at a high relative-concentration; high relative-concentrations of these constituents were not detected in the Hard Rock study area. Twelve of 88 VOCs and 14 of 123 pesticides and pesticide degradates analyzed in grid wells were detected. Chloroform was the only VOC detected in more than 10 percent of the grid wells. The herbicides simazine, atrazine, and prometon were each detected in greater than 10 percent of the grid wells. Perchlorate was detected in 22 percent of the grid wells sampled. The understanding assessment showed a significant correlation of trihalomethanes (THMs) and solvents to urban land-use, indicating that detections of these constituents are more likely to occur in groundwater underlying urbanized areas of the study unit. MTBE concentrations were negatively correlated to the distance from the nearest leaking underground fuel tank, indicating that point sources are the most significant contributing factor for MTBE concentrations to groundwater in the study unit. The positive correlation of THM and herbicide concentrations to modern groundwater was significant, as was the negative correlation of herbicide concentrations to pH and anoxic groundwater. The negative correlation of herbicides to pH and anoxic groundwater was likely due to the fact that these constituents were detected more frequently in shallow wells where groundwater conditions tend to be oxic with relatively low pH.

California↗

USGS2011

Sources, fate, and transport of nitrogen and phosphorus in the Chesapeake Bay watershed: An empirical model

Spatially Referenced Regression on Watershed Attributes (SPARROW) was used to provide empirical estimates of the sources, fate, and transport of total nitrogen (TN) and total phosphorus (TP) in the Chesapeake Bay watershed, and the mean annual TN and TP flux to the bay and in each of 80,579 nontidal tributary stream reaches. Restoration efforts in recent decades have been insufficient to meet established standards for water quality and ecological conditions in Chesapeake Bay. The bay watershed includes 166,000 square kilometers of mixed land uses, multiple nutrient sources, and variable hydrogeologic, soil, and weather conditions, and bay restoration is complicated by the multitude of nutrient sources and complex interacting factors affecting the occurrence, fate, and transport of nitrogen and phosphorus from source areas to streams and the estuary. Effective and efficient nutrient management at the regional scale in support of Chesapeake Bay restoration requires a comprehensive understanding of the sources, fate, and transport of nitrogen and phosphorus in the watershed, which is only available through regional models. The current models, Chesapeake Bay nutrient SPARROW models, version 4 (CBTN_v4 and CBTP_v4), were constructed at a finer spatial resolution than previous SPARROW models for the Chesapeake Bay watershed (versions 1, 2, and 3), and include an updated timeframe and modified sources and other explantory terms. Chesapeake Bay receives an estimated 1.32 x 10 8 kilograms (132,000 metric tons) of nitrogen and 9.74 x 10 6 kilograms (9,740 metric tons) of phosphorus annually from its watershed, mainly through its two largest tributaries, the Susquehanna and Potomac Rivers. Significant (α=0.10) sources of nutrients to streams in the watershed include fertilizer and manure applications in agricultural areas, undifferentiated urban activities, point sources, atmospheric deposition and direct fixation by crops (for nitrogen), and mineral sources (for phosphorus). Agriculture (primarily fertilizer applications and crop fixation) contributes more than half of the nitrogen delivered from the watershed to the bay; phosphorus contributions are more mixed, and fairly evenly distributed among agricultural (fertilizer and manure applications) and urban (including point) sources. Natural mineral dissolution contributes approximately 14 percent of the phosphorus flux from the watershed to the Chesapeake Bay. Empirical estimates of average yields from different source areas and of the portion of selected applications delivered to streams agree closely with previously reported values in the literature. Nutrient fate and transport through the Chesapeake Bay watershed to the bay reflect the diferent physical and chemical properties of nitrogen and phosphorus compounds. Groundwater is an important pathway for nitrogen transport (as nitrate), and TN flux is greatest in areas with greater groundwater flow and in areas of the Piedmont underlain by carbonate rocks. TN flux decreases with increasing vegetative growth (likely indicative of plant uptake) and soil available water capacity (likely indicative of reducing conditions). Phosphorus transport to streams, conversely, is greatest in areas most likely to generate overland runoff and related erosion, including those with less permeable and more erodible soils and greater precipitation. Phosphorus transport also is greater in the Coastal Plain than in other areas, possibly due to saturation of soils with historical phosphorus applications. Both nitrogen and phosphorus are lost within watershed impoundments (lakes, ponds, or reservoirs), and nitrogen is also lost significantly along flowing reaches, particularly in small streams and in larger streams in warmer areas.

Chesapeake Bay↗

USGS2011

Water-quality conditions near the confluence of the Snake and Boise Rivers, Canyon County, Idaho

Total Maximum Daily Loads (TMDLs) have been established under authority of the Federal Clean Water Act for the Snake River-Hells Canyon reach, on the border of Idaho and Oregon, to improve water quality and preserve beneficial uses such as public consumption, recreation, and aquatic habitat. The TMDL sets targets for seasonal average and annual maximum concentrations of chlorophyll- a at 14 and 30 micrograms per liter, respectively. To attain these conditions, the maximum total phosphorus concentration at the mouth of the Boise River in Idaho, a tributary to the Snake River, has been set at 0.07 milligrams per liter. However, interactions among chlorophyll- a , nutrients, and other key water-quality parameters that may affect beneficial uses in the Snake and Boise Rivers are unknown. In addition, contributions of nutrients and chlorophyll- a loads from the Boise River to the Snake River have not been fully characterized. To evaluate seasonal trends and relations among nutrients and other water-quality parameters in the Boise and Snake Rivers, a comprehensive monitoring program was conducted near their confluence in water years (WY) 2009 and 2010. The study also provided information on the relative contribution of nutrient and sediment loads from the Boise River to the Snake River, which has an effect on water-quality conditions in downstream reservoirs. State and site-specific water-quality standards, in addition to those that relate to the Snake River-Hells Canyon TMDL, have been established to protect beneficial uses in both rivers. Measured water-quality conditions in WY2009 and WY2010 exceeded these targets at one or more sites for the following constituents: water temperature, total phosphorus concentrations, total phosphorus loads, dissolved oxygen concentration, pH, and chlorophyll- a concentrations (WY2009 only). All measured total phosphorus concentrations in the Boise River near Parma exceeded the seasonal target of 0.07 milligram per liter. Data collected during the study show seasonal differences in all measured parameters. In particular, surprisingly high concentrations of chlorophyll- a were measured at all three main study sites in winter and early spring, likely due to changes in algal populations. Discharge conditions and dissolved orthophosphorus concentrations are key drivers for chlorophyll- a on a seasonal and annual basis on the Snake River. Discharge conditions and upstream periphyton growth are most likely the key drivers for chlorophyll- a in the Boise River. Phytoplankton growth is not limited or driven by nutrient availability in the Boise River. Lower discharges and minimal substrate disturbance in WY2010 in comparison with WY2009 may have caused prolonged and increased periphyton and macrophyte growth and a reduced amount of sloughed algae in suspension in the summer of WY2010. Chlorophyll- a measured in samples commonly is used as an indicator of sestonic algae biomass, but chlorophyll- a concentrations and fluorescence may not be the most appropriate surrogates for algae growth, eutrophication, and associated effects on beneficial uses. Assessment of the effects of algae growth on beneficial uses should evaluate not only sestonic algae, but also benthic algae and macrophytes. Alternatively, continuous monitoring of dissolved oxygen detects the influence of aquatic plant respiration for all types of algae and macrophytes and is likely a more direct measure of effects on beneficial uses such as aquatic habitat. Most measured water-quality parameters in the Snake River were statistically different upstream and downstream of the confluence with the Boise River. Higher concentrations and loads were measured at the downstream site (Snake River at Nyssa) than the upstream site (Snake River near Adrian) for total phosphorus, dissolved orthophosphorus, total nitrogen, dissolved nitrite and nitrate, suspended sediment, and turbidity. Higher dissolved oxygen concentrations and pH were measured at the upstream site (Snake River near Adrian) than the downstream site (Snake River at Nyssa). Contributions from the Boise River measured at Parma do not constitute all of the increase in nutrient and sediment loads in the Snake River between the upstream and downstream sites. Surrogate models were developed using a combination of continuously monitored variables to estimate concentrations of nutrients and suspended sediment when samples were not possible. The surrogate models explained from 66 to 95 percent of the variability in nutrient and suspended sediment concentrations, depending on the site and model. Although the surrogate models could not always represent event-based changes in modeled parameters, they generally were successful in representing seasonal and annual patterns. Over a longer period, the surrogate models could be a useful tool for measuring compliance with state and site-specific water-quality standards and TMDL targets, for representing daily and seasonal variability in constituents, and for assessing effects of phosphorus reduction measures within the watershed.

Idaho↗

USGS2011

Assessing controls on perched saturated zones beneath the Idaho Nuclear Technology and Engineering Center, Idaho

Waste byproducts associated with operations at the Idaho Nuclear Technology and Engineering Center (INTEC) have the potential to contaminate the eastern Snake River Plain (ESRP) aquifer. Recharge to the ESRP aquifer is controlled largely by the alternating stratigraphy of fractured volcanic rocks and sedimentary interbeds within the overlying vadose zone and by the availability of water at the surface. Beneath the INTEC facilities, localized zones of saturation perched on the sedimentary interbeds are of particular concern because they may facilitate accelerated transport of contaminants. The sources and timing of natural and anthropogenic recharge to the perched zones are poorly understood. Simple approaches for quantitative characterization of this complex, variably saturated flow system are needed to assess potential scenarios for contaminant transport under alternative remediation strategies. During 2009-2011, the U.S. Geological Survey (USGS), in cooperation with the U.S. Department of Energy, employed data analysis and numerical simulations with a recently developed model of preferential flow to evaluate the sources and quantity of recharge to the perched zones. Piezometer, tensiometer, temperature, precipitation, and stream-discharge data were analyzed, with particular focus on the possibility of contributions to the perched zones from snowmelt and flow in the neighboring Big Lost River (BLR). Analysis of the timing and magnitude of subsurface dynamics indicate that streamflow provides local recharge to the shallow, intermediate, and deep perched saturated zones within 150 m of the BLR; at greater distances from the BLR the influence of streamflow on recharge is unclear. Perched water-level dynamics in most wells analyzed are consistent with findings from previous geochemical analyses, which suggest that a combination of annual snowmelt and anthropogenic sources (for example, leaky pipes and drainage ditches) contribute to recharge of shallow and intermediate perched zones throughout much of INTEC. The source-responsive fluxes model was parameterized to simulate recharge via preferential flow associated with intermittent episodes of streamflow in the BLR. The simulations correspond reasonably well to the observed hydrologic response within the shallow perched zone. Good model performance indicates that source-responsive flow through a limited number of connected fractures contributes substantially to the perched-zone dynamics. The agreement between simulated and observed perched-zone dynamics suggest that the source-responsive fluxes model can provide a valuable tool for quantifying rapid preferential flow processes that may result from different land management scenarios.

Scientific Investigations Report↗

USGS2012

Preliminary assessment of sources of nitrogen in groundwater at a biosolids-application area near Deer Trail

Concentrations of dissolved nitrite plus nitrate increased fairly steadily in samples from four shallow groundwater monitoring wells after biosolids applications to nonirrigated farmland began in 1993. The U.S. Geological Survey began a preliminary assessment of sources of nitrogen in shallow groundwater at part of the biosolids-application area near Deer Trail, Colorado, in 2005 in cooperation with the Metro Wastewater Reclamation District. Possible nitrogen sources in the area include biosolids, animal manure, inorganic fertilizer, atmospheric deposition, and geologic materials (bedrock and soil). Biosolids from the Metro Wastewater Reclamation District plant in Denver and biosolids, cow manure, geologic materials (bedrock and soil), and groundwater from the study area were sampled to measure nitrogen content and nitrogen isotopic compositions of nitrate or total nitrogen. Biosolids also were leached, and the leachates were analyzed for nitrogen content and other concentrations. Geologic materials from the study area also were sampled to determine mineralogy. Estimates of nitrogen contributed from inorganic fertilizer and atmospheric deposition were calculated from other published reports. The nitrogen information from the study indicates that each of the sources contain sufficient nitrogen to potentially affect groundwater nitrate concentrations. Natural processes can transform the nitrogen in any of the sources to nitrate in the groundwater. Load calculations indicate that animal manure, inorganic fertilizer, or atmospheric deposition could have contributed the largest nitrogen load to the study area in the 13 years before biosolids applications began, but biosolids likely contributed the largest nitrogen load to the study area in the 13 years after biosolids applications began. Various approaches provided insights into sources of nitrate in the groundwater samples from 2005. The isotopic data indicate that, of the source materials considered, biosolids and (or) animal manure were the most likely sources of nitrate in the wells at the time of sampling (2005), and that inorganic fertilizer, atmospheric deposition, and geologic materials were not substantial sources of nitrate in the wells in 2005. The large total nitrogen content of the biosolids and animal-manure samples and biosolids leachates also indicates that the biosolids and animal manure had potential to leach nitrogen and produce large dissolved nitrate concentrations in groundwater. The available data, however, could not be used to distinguish between biosolids or manure as the dominant source of nitrate in the groundwater because the nitrogen isotopic composition of the two materials is similar. Major-ion data also could not be used to distinguish between biosolids or manure as the dominant source of nitrate in the groundwater because the major-ion composition (as well as the isotopic composition) of the two materials is similar. Without additional data, chloride/bromide mass ratios do not necessarily support or refute the hypothesis that biosolids and (or) animal manure were the primary sources of nitrate in water from the study-area wells in 2005. Concentrations of water-extractable nitrate in the soil indicate that biosolids could be an important source of nitrate in the groundwater recharge. Nitrogen inventories in the soil beneath biosolids-application areas and the nitrogen-input estimates for the study area both support the comparisons of isotopic composition, which indicate that some type of human waste (such as biosolids) and (or) animal manure was the source of nitrate in groundwater sampled from the wells in 2005. The nitrogen-load estimates considered with the nitrogen isotopic data and the soil-nitrogen inventories indicate that biosolids applications likely are a major source of nitrogen to the shallow groundwater at these monitoring wells.

Colorado↗