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USGS2026

Engaging adult R3 outdoor educational program design to strengthen participation in hunting and fishing

Declining participation in hunting and fishing has been slowed by women who are learning numerous outdoor skills through recruitment, retention, and reactivation [R3] programs. R3 programs are hosted by state agencies, non-governmental organizations, and businesses that take a variety of approaches to develop participant skills and confidence. To understand how R3 program design influences hunting and fishing participation, we conducted 11 focus group interviews with 72 participants at women’s R3 programs to identify program design components that women appreciate when learning to hunt and fish. Well-designed programs offered customized educational approaches to align with participants’ needs, created a supportive environment to foster a sense of belonging, and streamlined participation through event logistics. Programs that incorporated these design components promoted skill development, boosted self-confidence, and helped participants build a supportive network to independently hunt and fish. Program leaders can apply these findings to bolster participation in hunting and fishing.

Human Dimensions of Wildlife↗

USGS2012

Geographic patterns of fishes and jellyfish in Puget Sound surface waters

We explored patterns of small pelagic fish assemblages and biomass of gelatinous zooplankton (jellyfish) in surface waters across four oceanographic subbasins of greater Puget Sound. Our study is the first to collect data documenting biomass of small pelagic fishes and jellyfish throughout Puget Sound; sampling was conducted opportunistically as part of a juvenile salmon survey of daytime monthly surface trawls at 52 sites during May–August 2003. Biomass composition differed spatially and temporally, but spatial differences were more distinct. Fish dominated in the two northern basins of Puget Sound, whereas jellyfish dominated in the two southern basins. Absolute and relative abundance of jellyfish, hatchery Chinook salmon Oncorhynchus tshawytscha , and chum salmon O. keta decreased with increasing latitude, whereas the absolute and relative abundance of most fish species and the average fish species richness increased with latitude. The abiotic factors with the strongest relationship to biomass composition were latitude, water clarity, and sampling date. Further study is needed to understand the spatial and temporal heterogeneity in the taxonomic composition we observed in Puget Sound surface waters, especially as they relate to natural and anthropogenic influences.

Marine and Coastal Fisheries: Dynamics, Management↗

USGS2015

The global status of freshwater fish age validation studies and a prioritization framework for future research

Age information derived from calcified structures is commonly used to estimate recruitment, growth, and mortality for fish populations. Validation of daily or annual marks on age structures is often assumed, presumably due to a lack of general knowledge concerning the status of age validation studies. Therefore, the current status of freshwater fish age validation studies was summarized to show where additional effort is needed, and increase the accessibility of validation studies to researchers. In total, 1351 original peer-reviewed articles were reviewed from freshwater systems that studied age in fish. Periodicity and age validation studies were found for 88 freshwater species comprising 21 fish families. The number of age validation studies has increased over the last 30 years following previous calls for more research; however, few species have validated structures spanning all life stages. In addition, few fishes of conservation concern have validated ageing structures. A prioritization framework, using a combination of eight characteristics, is offered to direct future age validation studies and close the validation information gap. Additional study, using the offered prioritization framework, and increased availability of published studies that incorporate uncertainty when presenting research results dealing with age information are needed.

Reviews in Fisheries Science & Aquaculture↗

USGS2017

Characterizing the early life history of an imperiled freshwater mussel ( Ptychobranchus jonesi ) with host-fish determination and fecundity estimation

Conservation of imperiled species is frequently challenged by insufficient knowledge of life history and environmental factors that affect various life stages. The larvae (glochidia) of most freshwater mussels in the family Unionidae are obligate ectoparasites of fishes. We described the early life history of the federally endangered Southern Kidneyshell Ptychobranchus jonesi and compared methods for estimating fecundity and conducting host trials on this conglutinate-producing mussel species. Glochidial inoculation baths and direct feeding of conglutinates to Percina nigrofasciata , Etheostoma edwini , and Etheostoma fusiforme resulted in successful metamorphosis to the juvenile life stage. Ptychobranchus jonesi glochidia did not metamorphose on 25 other species of fishes tested representing 11 families. Three juveniles were recovered from Gambusia holbrooki resulting in a metamorphosis rate <1%. We characterize P. jonesi as a host-fish specialist that fractionally releases conglutinates from late January to early June. Intact P. jonesi conglutinates resemble simuliid fly larvae attached to an egg-like structure, but most conglutinates were released as segments representing separate egg or larva mimics. Viability of glochidia encased within a conglutinate was >90% for ≥5 d. Feeding conglutinates directly to fishes allowed us to estimate seminatural infestation rates and calculate average numbers of juveniles produced per conglutinate, unlike the traditional approach of infesting fish hosts in an inoculation bath. Regressions based on the physical dimensions of each conglutinate or conglutinate segment were the most practical method used to estimate fecundity. Species distribution information, early life-history description, and methods developed for determining fecundity and conducting host trials may assist in the conservation of P. jonesi during recovery options that include captive propagation, augmentation, and reestablishment.

Alabama, Florida↗

USGS2025

Using DNA barcoding to evaluate freshwater mussel and fish-host relationships in the Flint River (Georgia, USA)

Freshwater mussels have a unique life history in which larval mussels (glochidia) act as obligate parasites to fish hosts. Host selectivity may be species specific, and identification of host fish is a critical step in conservation planning for individual mussel species. The Flint River harbors ~23% of the freshwater mussel (order Unionida) diversity in the state of Georgia, USA. Nine species in the basin are state or federally listed, and local diversity is threatened by shifting hydrologic conditions, increasing habitat loss, and sedimentation. However, knowledge on host species is lacking for nearly 40% of mussel species in the Flint River, limiting the efforts of conservation managers. In this study, we assessed the use of host fish by mussels by identifying the species of naturally encysted mussel larvae and transformed juveniles found on wild-caught fishes. Infested fishes were collected in the summers of 2021 and 2022 and held in laboratory conditions. Glochidia and juvenile mussels were collected as they excised from live hosts and were identified by DNA barcoding with the cytochrome oxidase c subunit I locus. Twenty-eight unique mussel–host relationships were identified, 27 of which were considered novel when cross-referenced to the existing mussel–host databases and peer-reviewed literature. Our data build upon knowledge of host use in unionids and further demonstrate the importance of understanding patterns in wild host use.

Georgia↗

USGS2026

Fish introductions related to strong and diversifying effects on zooplankton assemblages in high-elevation mountain lakes

Freshwater environments are threatened by multiple anthropogenic stressors. High-elevation mountain lakes are particularly vulnerable to introduced nonnative fish and nutrient deposition because they were historically fishless and typically oligotrophic. To understand the potential effects of fish introduction and nutrient levels on high-elevation lake ecosystems, we assessed differences in zooplankton size, biomass, and density in 76 alpine and subalpine lakes in the Wind River Range, Wyoming, USA, and related those differences to the presence of introduced trout and to food quality (seston nutrient content) and quantity (chlorophyll a concentration). Trout presence, and to a lesser extent trout species, were the strongest predictors of zooplankton composition. Fishless lakes were dominated by low densities of copepods and other large-bodied taxa, and lakes with introduced trout were dominated by high densities of cladocerans, rotifers, and other small-bodied taxa. These assemblage differences are likely because trout reduce or eliminate all large zooplankton taxa by size-selective predation, including predation on Hesperodiaptomus shoshone (S. A. Forbes, 1893), a keystone species that effectively controls populations of rotifers and small crustacean zooplankton taxa. In contrast, the quantity and quality of seston was not associated with zooplankton assemblages. Zooplankton composition in lakes with Rocky Mountain Cutthroat Trout Oncorhynchus virginalis (Girard, 1856) or Golden Trout Oncorhynchus aguabonita (Jordan, 1892) was highly variable, but in lakes with primarily Brook Trout Salvelinus fontinalis (Mitchill, 1814), zooplankton composition was consistently distinct from that in fishless lakes, suggesting that Brook Trout introductions altered the zooplankton assemblage to a greater extent than Cutthroat or Golden trout did. These results contribute to global evidence that predatory fish introductions fundamentally restructure alpine lake food webs. The slow or incomplete recovery of native zooplankton assemblages following fish removal suggests long-term ecological legacies of fish introductions and highlights the importance of understanding factors that promote resilience in high-elevation lake ecosystems.

Wyoming↗

USGS2025

A comprehensive assessment of membrane bioreactor contaminant removal efficacy through analytical chemistry, fish exposures, and microbiome characterization

Treated municipal wastewater effluent is an important pathway for Contaminants of Emerging Concern (CEC) to enter aquatic ecosystems. As the aging wastewater infrastructure in many industrialized countries requires upgrades or replacement, assessing new treatment technologies in the context of CEC effects may provide additional support for science-based resource management. Here, we used three lines of evidence, analytical chemistry, fish exposure experiments, and fish and water microbiome analysis, to assess the effectiveness of membrane bioreactor treatment (MBR) to replace traditional activated sludge treatment. To do this, we sampled a municipal wastewater treatment plant with a split wastewater stream, a portion of which was treated with an MBR and another via an oxidation ditch (OXI). The OXI and MBR treatments substantially reduced most measured CECs compared to the primary effluent (PRI). Only pesticides and some pharmaceuticals were recalcitrant to both secondary treatment methods. While ammonia toxicity of PRI prevented its inclusion in fish exposure experiments, exposure of fish with waters from the OXI or MBR treated wastewater produced only subtle biological differences with no adverse apical outcomes. These findings were consistent with low chemically derived exposure: activity ratios for OXI and MBR. Microbiome analysis of fish and wastewater highlighted the significant reduction of microbial abundance and diversity in the MBR treatment compared to all other treatments. The comparable removal efficacy of CECs in MBR makes it an attractive alternative to traditional OXI, especially when MBR may eliminate the need for tertiary treatment for wastewater disinfection.

Environmental Toxicology and Chemistry↗

USGS2020

Advancements towards selective barrier passage by automatic species identification: Applications of deep convolutional neural networks on images of dewatered fish

Invasive species negatively affect enterprises such as fisheries, agriculture, and international trade. In the Laurentian Great Lakes Basin, threats include invasive sea lamprey ( Petromyzon marinus ) and the four major Chinese carps. Barriers have proven to be an effective mechanism for managing invasive species but are detrimental in that they also limit the migration of desirable, native species. Fish passage technologies that selectively pass desirable species while blocking undesirable species are needed. Key to an automated selective barrier passage system is a high precision fish classifier to assign fish to be passed or blocked. Presented is an evaluation of two classifiers developed using images of partially dewatered fish captured from a commercial, high-speed camera array. For a lamprey vs. non-lamprey classification task, an ensemble prediction approach achieved near perfect accuracy on both a validation and test dataset. For a species classification task for 13 species found in the Great Lakes region, an ensemble prediction approach achieved accuracies of 96% and 97% on a validation and test dataset, respectively. Both prediction approaches were based on deep convolutional neural networks constructed using transfer learning and image augmentation. The study provides an important proof-of-concept for the viability in fully automated, selective fish passage systems.

Illinois, Michigan,Ohio↗

USGS2003

Surgical implantation of transmitters into fish

Although the Animal Welfare Act does not cover poikilotherms, individual institutions and policies and legal requirements other than the Animal Welfare Act (e.g., the US Public Health Service and the Interagency Research Animal Committee's Principles for the Utilization and Care of Vertebrate Animals Used in Testing, Research, and Training) require the review of projects involving fish by institutional animal care and use committees (IACUCs). IACUCs may, however, lack the knowledge and experience to evaluate fish projects judiciously, especially when the projects are in field settings. Surgeries involving implantation of transmitters and other instruments into the coelom, which now comprise a very common research tool in the study of free-ranging fishes, are examples of surgeries that use a broad spectrum of surgical and anesthetic techniques, some of which would not be considered acceptable for similar work on mammals. IACUCs should apply the standards they would expect to be used for surgeries on homeotherms to surgeries on fish. Surgeons should be carefully trained and experienced. Surgical instruments and transmitters should be sterile. Regulations and laws on the use of drugs in animals should be followed, particularly those concerned with anesthetics and antibiotics used on free-ranging fish. Exceptions to surgical procedures should be made only when circumstances are extreme enough to warrant the use of less than optimal procedures.

ILAR Journal↗

USGS2019

Development and validation of a gas chromatography/mass spectrometry procedure for confirmation of para-toluenesulfonamide in edible fish fillet tissue

Chloramine-T is a disinfectant being developed as a treatment for bacterial gill disease in cultured fish. As part of the drug approval process, a method is required for the confirmation of chloramine-T residues in edible fish tissue. The marker residue that will be used to determine the depletion of chloramine-T residues from the edible tissue of treated fish is para-toluenesulfonamide (p-TSA), a metabolite of chloramine-T. The development and validation of a procedure for the confirmation of p-TSA is described. Homogenized fish tissue is dried by mixing with anhydrous sodium sulfate, and the mixture is extracted with methylene chloride. The extract is passed through a silica gel solid-phase extraction column, from which p-TSA is subsequently eluted with acetonitrile. The acetonitrile extract is evaporated, and the oily residue is dissolved in hexane. The hexane solution is shaken with fresh acetonitrile. The acetonitrile solution is evaporated and the residue is redissolved in dilute potassium hydroxide solution. The aqueous solution is extracted with methylene chloride to further remove more of the fat co-extractive. The aqueous solution is reacted with pentafluorobenzyl bromide in presence of tetrabutylammonium hydrogensulfate. The resulting di-(pentafluorobenzyl) derivative of p-TSA is analyzed by gas chromatography/mass spectrometry. This method permits the confirmation of p-TSA in edible fish tissue at 20 ppb.

Journal of AOAC International↗

USGS2026

Putting weight to work: A review and examples of weight-based indicators in freshwater fish stock assessment

Despite being a direct measure of biomass and central to fisheries management, weight-based metrics remain underutilized in freshwater fish stock assessment. Here, we present a concise review of the application of weight in evaluating freshwater fish populations. We examine the historical use of weighing, assess how weight is applied across subdisciplines of freshwater fish science, contrast weight- and length-based approaches, and identify biases in their application. We then synthesize weight-based metrics, indices, and models within four broad categories—population and community weight structure; condition, growth, and efficiency; reproductive potential and production; and yield and exploitation dynamics—highlighting approaches that inform fish ecology, population and community dynamics, and vital rates. We conclude by identifying key opportunities and methodological innovations needed to expand the effective use of weight-based metrics in freshwater fish conservation and management.

North American Journal of Fisheries Management↗

USGS2025

Decadal stability in stream fish communities and contemporary ecological drivers of species occupancy in two Appalachian U.S. National Parks

Objective Although conserving fish biodiversity in lotic systems is challenging, protected areas can provide refuge from certain environmental stressors. In the Appalachian region, USA, the National Park Service manages Delaware Water Gap National Recreation Area (DEWA) and New River Gorge National Park & Preserve (NERI), which contain abundant and diverse freshwater resources. To assess the effectiveness of these protected areas in conserving stream fishes, we evaluated decadal changes and ecological drivers of species occupancy and detection. Methods Using fish assemblage data from backpack electrofishing surveys conducted in both parks during 2013–2014 and 2022–2023, we quantified temporal differences in species occupancy and detection probabilities using a Bayesian hierarchical multispecies occupancy modeling approach. For the 2022–2023 survey, we included habitat variables as predictors of occupancy and detection. Results Community composition and occupancy probabilities for species in both parks remained similar through time, with the most recent occupancy estimates ranging from 0.07 (90% CI = 0.02, 0.14) for Variegate Darter Etheostoma variatum and Rainbow Darter E. caeruleum to 0.73 (90% credible interval = 0.59, 0.85) for Blacknose Dace Rhinichthys atratulus . Changes in occupancy were more prominent at Delaware Water Gap National Recreation Area than New River Gorge National Park & Preserve, with Yellow Perch Perca flavescens having a posterior mean difference of −0.17 [90% credible interval = −0.35, −0.01] and American Eel Anguilla rostrata having a high posterior probability (>80%) of occupancy increasing by at least 1%. Habitat variables were related to community structure, but effects varied in significance, magnitude, and direction among species and parks. Conversely, species-specific detection probabilities were comparatively less affected by environmental and sampling effort predictors. Conclusions Between 2013 and 2023, occupancy estimates for 44 fish species across two protected, ecologically diverse landscapes remained relatively stable. Furthermore, we highlight the efficacy of national parks in maintaining freshwater fish biodiversity amidst rapid global change.

New Jersey, Pennsylvania, West Virginia↗

USGS2020

Wait and snap: eastern snapping turtles (Chelydra serpentina) prey on migratory fish at road-stream crossing culverts

There is growing evidence that culverts at road-stream crossings can increase fish density by reducing stream width and fish movement rates, making these passageways ideal predator ambush locations. In this study, we used a combination of videography and δ 13 C stable isotope analyses to investigate predator–prey interactions at a road-stream crossing culvert. Eastern snapping turtles ( Chelydra serpentina ) were found to regularly reside within the culvert to ambush migratory river herring ( Alosa spp.). Resident fish species displayed avoidance of the snapping turtles, resulting in zero attempted attacks on these fish. In contrast, river herring did not display avoidance and were attacked by a snapping turtle on 79% of approaches with a 15% capture rate. Stable isotope analyses identified an apparent shift in turtle diet to consumption of river herring in turtles from culvert sites that was not observed in individuals from non-culvert sites. These findings suggest that anthropogenic barriers like culverts that are designed to allow passage may create predation opportunities by serving as a bottleneck to resident and migrant fish movement.

Biology Letters↗

USGS2016

Fishing diseased abalone to promote yield and conservation

Past theoretical models suggest fishing disease-impacted stocks can reduce parasite transmission, but this is a good management strategy only when the exploitation required to reduce transmission does not overfish the stock. We applied this concept to a red abalone fishery so impacted by an infectious disease (withering syndrome) that stock densities plummeted and managers closed the fishery. In addition to the non-selective fishing strategy considered by past disease-fishing models, we modelled targeting (culling) infected individuals, which is plausible in red abalone because modern diagnostic tools can determine infection without harming landed abalone and the diagnostic cost is minor relative to the catch value. The non-selective abalone fishing required to eradicate parasites exceeded thresholds for abalone sustainability, but targeting infected abalone allowed the fishery to generate yield and reduce parasite prevalence while maintaining stock densities at or above the densities attainable if the population was closed to fishing. The effect was strong enough that stock and yield increased even when the catch was one-third uninfected abalone. These results could apply to other fisheries as the diagnostic costs decline relative to catch value.

Philosophical Transactions of the Royal Society B:↗

USGS2015

Aquatic pollution increases use of terrestrial prey subsidies by stream fish

Stream food webs are connected with their riparian zones through cross-ecosystem movements of energy and nutrients. The use and impact of terrestrial subsidies on aquatic consumers is determined in part by in situ biomass of aquatic prey. Thus, stressors such as aquatic pollutants that greatly reduce aquatic secondary production could increase the need for and reliance of stream consumers on terrestrial resource subsidies. To test this hypothesis, we surveyed stream fish, their diets and resource availability in 16 subalpine streams over a regional gradient of trace metals known to strongly impact aquatic insect communities (i.e. fish prey) in the Colorado Rocky Mountains, USA. Fish increased their reliance on terrestrial insect prey as stream metals increased. Relative biomass of terrestrial insects in stomach contents of Brook and Brown Trout increased with respect to aquatic insect biomass and total stomach contents. Drifting insect biomass showed a declining trend for aquatic, but not terrestrial insects, over the metal gradient. Trout densities were unrelated to metal concentrations in streams where we found fish. Synthesis and applications . Our results indicate that diets of aquatic consumers can become more terrestrial as aquatic stressors that limit in situ food production increase and that these subsidies may compensate for loss of aquatic resources. This work implies an important connection between preserving aquatic–terrestrial linkages and management of fish populations in stressed watersheds. Specifically, intact riparian zones and aquatic–terrestrial linkages are likely to be important for maintaining trout production in streams with moderate metal contamination.

Colorado↗

USGS2019

Anthropogenic land‐use change intensifies the effect of low flows on stream fishes

As ecosystems experience simultaneous disturbances, it is critical to understand how multiple stressors interact to affect ecological change. Land‐use change and extreme flow events are two important stressors that could interact to affect fish populations. We evaluated the individual and interactive effects of discharge and land‐use change associated with oil and natural gas development on populations of two stream fishes over a 7‐year period. We used repeated‐state (i.e. abundance trends) and rate (i.e. colonization and persistence) responses to advance our understanding of flow‐ecology relationships in a multiple‐stressor framework. Overall, fish abundance, colonization and persistence declined as discharge decreased. The effect of land‐use change associated with oil and natural gas development differed between species, with the abundance of Mottled Sculpin declining and Mountain Sucker increasing as land‐use change increased. We found both synergistic and antagonistic interactions between discharge and land‐use change. Land‐use change intensified the effect of low flows for Mottled Sculpin and lead to greater variability in responses to flow for Mountain Sucker. These differences between species' responses are likely due to differences in their physiological tolerances and behavioural adaptations to disturbance. Synthesis and applications . Our research provides empirical evidence for the complex interactions that can arise between discharge and anthropogenic land‐use change. Management efforts to reduce inputs of sediments and chemical contaminants associated with land‐use change (e.g. silt fences, vegetative buffers) and promote quality refuge habitats (i.e. in‐stream habitat restoration) could help mitigate the negative effects of low‐flow extremes on stream fishes. Further development of flow‐ecology relationships in a multiple‐stressor framework will help guide management of stream fishes, and provide a better understanding of the mechanisms underlying responses of different species.

Wyoming↗

USGS2025

Unobserved individual and population level impacts of fishing gear entanglements on North Atlantic right whales

Fishing gear entanglements can compromise health and lower survival and reproductive output of wildlife, which can slow population growth or cause population declines. However, entanglements may go unobserved, making it difficult to quantify their effects on individuals' vital rates and a population's trajectory. Fishing gear entanglements are a leading cause of death for North Atlantic right whales, Eubalaena glacialis , an endangered species whose population has declined substantially over the last decade. Key sources of observation error have not been addressed when quantifying the effects of entanglement on this species. We formulated a hidden Markov model that integrated 28 years of photo identification records, visual health assessments, entanglement assessments, and hormone assays to estimate body condition dynamics, and entanglement, survival, and reproductive rates of female North Atlantic right whales. The model also accounted for observation errors, including entanglements and reproductive events that were unobserved. Whales entangled in fishing gear were drastically more likely to experience declines in body condition and had lower survival rates than whales that were not entangled. Additionally, only whales in good body condition became pregnant. Between 1994 and 2021 entanglements reduced the expected number of calves born by 12.9% (95% credible interval: 8.2%–19.6%) and the expected number of females alive at the end of 2021 by 18.5% (95% credible interval: 8.6%–29.4%). Fishing gear entanglements have reduced the North Atlantic right whale population's capacity to recover and have increased the importance of the health and survival of the remaining living whales. Therefore, reducing the risk of fishing gear entanglements is likely necessary for the population to recover.

Animal Conservation↗

USGS2022

Reducing uncertainty in climate change responses of inland fishes: A decision-path approach

Climate change will continue to be an important consideration for conservation practitioners. However, uncertainty in identifying appropriate management strategies, particularly for understudied species and regions, constrains the implementation of science-based solutions and adaptation strategies. Here, we share a decision-path approach to reduce uncertainty in climate change responses of inland fishes to inform conservation and adaptation planning. With the Fish and Climate Change database (FiCli), a comprehensive, online, public database of peer-reviewed literature on documented and projected climate impacts to inland fishes, users can identify relevant studies and associated management recommendations via geographic regions, response types (i.e., fish assemblage dynamics, demographic, distributional, evolutionary, phenological), fish taxa, and traits (e.g., thermal guilds, feeding type, parental care, habitat type) and use a suite of summary tools to make more informed decisions. For both data-rich and data-poor scenarios, we demonstrate that this approach can reduce uncertainty in understanding climate change responses. Using thermal sensitivity as an example, we also establish the utility of FiCli database to address other user-defined, management-relevant questions via supplementary analyses. This decision-path approach can be applied to rapid assessments, management decisions, and policy development and may serve as a model for other conservation decision-making processes.

Conservation Science and Practice↗