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At least 1,081 records · Page 60Linked to original sources

USGS2017

Osmoregulation and muscle water control in vitro facing salinity stress of the Amazon fish Oscar Astronotus ocellatus (Cichlidae)

Specimens of Oscar Astronotus ocellatus from a fish farm were abruptly submitted to salt stress of 14 ppt and 20 ppt, for 3 and 8 h to determine their plasma osmolality. Muscle wet body mass change in vitro was analyzed from control freshwater animals. Fish in 14 ppt presented no osmolality distress even after 8 h. In 20 ppt, a slight increase (10%) in plasma osmolality was observed for both times of exposure when compared to control fish. Muscle slices submitted in vitro to hyper-osmotic saline displayed decreased body mass after 75 min, and slices submitted to hypo-osmotic saline displayed increased body mass after 45 min when compared to control (isosmotic saline). These results reinforce A. ocellatus ’s euryhalinity. The fish were able to regulate its internal medium and tolerate 14 ppt, but presented an intense osmotic challenge and low muscle hydration control when facing salinities of 20 ppt.

Marine and Freshwater Behaviour and Physiology↗

USGS2008

Diagenetic mineralization in Pennsylvanian coals from Indiana, USA: 13C/12C and 18O/16O implications for cleat origin and coalbed methane generation

Cleats and fractures in southwestern Indiana coal seams are often filled with authigenic kaolinite and/or calcite. Carbon- and oxygen-stable isotope ratios of kaolinite, calcite, and coalbed CO2 were evaluated in combination with measured values and published estimates of ??18O of coalbed paleowaters that had been present at the time of mineralization. ??18Omineral and ??18Owater values jointly constrain the paleotemperature of mineralization. The isotopic evidence and the thermal and tectonic history of this part of the Illinois Basin led to the conclusion that maximum burial and heat-sterilization of coal seams approximately 272??Ma ago was followed by advective heat redistribution and concurrent precipitation of kaolinite in cleats at a burial depth of < 1600??m at ??? 78 ?? 5????C. Post-Paleozoic uplift, the development of a second generation of cleats, and subsequent precipitation of calcite occurred at shallower burial depth between ??? 500 to ??? 1300??m at a lower temperature of 43 ?? 6????C. The available paleowater in coalbeds was likely ocean water and/or tropical meteoric water with a ??18Owater ??? - 1.25??? versus VSMOW. Inoculation of coalbeds with methanogenic CO2-reducing microbes occurred at an even later time, because modern microbially influenced 13C-enriched coalbed CO2 (i.e., the isotopically fractionated residue of microbial CO2 reduction) is out of isotopic equilibrium with 13C-depleted calcite in cleats. ?? 2007 Elsevier B.V. All rights reserved.

International Journal of Coal Geology↗

USGS2011

Enhanced Late Holocene ENSO/PDO expression along the margins of the eastern North Pacific

Pacific climate is known to have varied during the Holocene, but spatial patterns remain poorly defined. This paper compiles terrestrial and marine proxy data from sites along the northeastern Pacific margins and proposes that they indicate 1) suppressed ENSO conditions during the middle Holocene between &sim;8000 and 4000 cal BP with a North Pacific that generally resembled a La Niña-like or more negative PDO phase and 2) a climate transition between &sim;4200 and 3000 cal BP that appears to be the teleconnected expression to a more modern-like ENSO Pacific. Compared to modern day conditions, the compiled data suggest that during the middle Holocene, the Aleutian Low was generally weaker during the winter and/or located more to the west, while the North Pacific High was stronger during the summer and located more to the north. Coastal upwelling off California was more enhanced during the summer and fall but suppressed during the spring. Oregon and California sea surface temperatures (SSTs) were cooler. The Santa Barbara Basin had an anomalous record, suggesting warmer SSTs. Late Holocene records indicate a more variable, El Niño-like, and more positive PDO Pacific. The Aleutian Low became more intensified during the winter and/or located more to the east. The North Pacific High became weaker and/or displaced more to the south. Coastal upwelling off California intensified during the spring but decreased during the fall. Oregon and California SSTs became warmer, recording the shoreward migration of sub-tropical gyre waters during the fall, while spring upwelling (cooler SST) increased in the Santa Barbara Basin. The high-resolution proxy records indicate enhanced ENSO and PDO variability after &sim;4000 cal BP off southern California, &sim;3400 cal BP off northern California, and by &sim;2000 cal BP in southwestern Yukon. A progressively northward migration of the ENSO teleconnection during the late Holocene is proposed.

Quaternary International↗

USGS2013

Final report for sea-level rise response modeling for San Francisco Bay estuary tidal marshes

The International Panel on Climate Change has identified coastal ecosystems as areas that will be disproportionally affected by climate change. Current sea-level rise projections range widely with 0.57 to 1.9 meters increase in mea sea level by 2100. The expected accelerated rate of sea-level rise through the 21 st century will put many coastal ecosystems at risk, especially those in topographically low-gradient areas. We assessed marsh accretion and plant community state changes through 2100 at 12 tidal salt marshes around San Francisco Bay estuary with a sea-level rise response model. Detailed ground elevation, vegetation, and water level data were collected at all sites between 2008 and 2011 and used as model inputs. Sediment cores (taken by Callaway and others, 2012) at four sites around San Francisco Bay estuary were used to estimate accretion rates. A modification of the Callaway and others (1996) model, the Wetland Accretion Rate Model for Ecosystem Resilience (WARMER), was utilized to run sea-level rise response models for all sites. With a mean sea level rise of 1.24 m by 2100, WARMER projected that the vast majority, 95.8 percent (1,942 hectares), of marsh area in our study will lose marsh plant communities by 2100 and to transition to a relative elevation range consistent with mudflat habitat. Three marshes were projected to maintain marsh vegetation to 2100, but they only composed 4.2 percent (85 hectares) of the total marsh area surveyed.

California↗

USGS2016

Geologic and geophysical models for Osage County, Oklahoma, with implications for groundwater resources

This report summarizes a three-dimensional (3-D) geologic model that was constructed to provide a framework to investigate groundwater resources of the Osage Nation in northeastern Oklahoma. This report also presents an analysis of an airborne electromagnetic (AEM) survey that assessed the spatial variation of electrical resistivity to depths as great as 300 meters in the subsurface. The report and model provide support for a countywide assessment of groundwater resources, emphasizing the Upper Pennsylvanian rock units in the shallow subsurface of central and eastern Osage County having electrical resistivity properties that may indicate aquifers. Surface outcrops and subsurface stratigraphic picks on wire-line geophysical logs of Upper Pennsylvanian–Lower Permian sedimentary rock were used to construct a 3-D model of the geologic subsurface as an aid for evaluating groundwater resources in Osage County. Quaternary alluvium and terraces along major streams and the Arkansas River are included in the geologic framework model. Data from the AEM survey were subjected to quality-control procedures, truncated at depth of investigation (DOI), and then used to build a 3-D electrical resistivity model making use of secondary and tertiary interpolation profiles between primary data profiles. The AEM data highlight westward-inclined resistivity gradients that parallel the shallow dip of bedrock strata; bodies have resistivity >30 ohm-meters, and extend as much as 10 kilometers (km) down the dip of host geologic units. Volume analysis and internal imaging of an integrated 3-D geology and electrical resistivity model give a proxy for likely aquifer units with large relative volumes of high resistivity: Quaternary alluvium, Elgin Sandstone Lentil in the upper part of the Vamoosa Group, Tallant Formation, and parts of a combined Wann-Iola-Chanute Formation. Less voluminous, high-resistivity bodies correspond to intervals in the lower part of the Vamoosa Group in the east-central part of the county and probable limestone intervals in the upper part of the Vanoss Group in the northwest part of the county. Northwestern and eastern troughs of potable water previously defined for central Osage County generally correspond to down-dip projections of high-resistivity bodies associated with the Elgin Sandstone Lentil of the Vamoosa Group and Tallant Formation, respectively.

Oklahoma↗

USGS2015

Groundwater data network interoperability

Water data networks are increasingly being integrated to answer complex scientific questions that often span large geographical areas and cross political borders. Data heterogeneity is a major obstacle that impedes interoperability within and between such networks. It is resolved here for groundwater data at five levels of interoperability, within a Spatial Data Infrastructure architecture. The result is a pair of distinct national groundwater data networks for the United States and Canada, and a combined data network in which they are interoperable. This combined data network enables, for the first time, transparent public access to harmonized groundwater data from both sides of the shared international border.

Journal of Hydroinformatics↗

USGS2025

Predicting invasiveness of freshwater fishes imported into North America: Regional differences in models and outcomes

Biological invasions driven by international trade heighten the urgency for development of invasion risk models, as the traits and parameters that consistently predict successful invasion remain unresolved. For four regions of North America that include parts of the United States and Canada (Sacramento-San Joaquin River Basins, Lower Colorado River Basin, Great Lakes Region, Mid-Atlantic Region), we construct and compare classification tree models to reveal robust predictors for the establishment and ecological impact stages of freshwater fish invasion. We subsequently apply the models to identify invasive fish species in trade and conduct pathway analyses to determine which trades (aquarium, biological supply, live bait, live food, water garden) and source continents pose the greatest risk to each region. Model results differed by invasion stage and region. Across regions, establishment models shared climate-related predictors including climate match and temperature tolerance. Three of the four impact models contained prior establishment success. The greatest number of species (548) were predicted to establish in the Sacramento-San Joaquin while the fewest (5) were predicted to establish in the Mid-Atlantic. Forty species were predicted to establish in multiple regions, five of which were also predicted to have high impact. The aquarium trade and Asia supplied the most species predicted to establish. Taken together, the results highlight region-specific models, indicating no universal model predicts invasion. Climate-related and prior establishment variables were most useful to risk assessments. The regional models, and identified high-risk pathways and potential invaders, could be applied to prevent future fish invasions in North America.

Laurentian Great Lakes Region, Lower Colorado Rive↗

USGS2008

Anthropogenic influences on the input and biogeochemical cycling of nutrients and mercury in Great Salt Lake, Utah, USA

Despite the ecological and economic importance of Great Salt Lake (GSL), little is known about the input and biogeochemical cycling of nutrients and trace elements in the lake. In response to increasing public concern regarding anthropogenic inputs to the GSL ecosystem, the US Geological Survey (USGS) and US Fish and Wildlife Service (USFWS) initiated coordinated studies to quantify and evaluate the significance of nutrient and Hg inputs into GSL. A 6??? decrease in ??15N observed in brine shrimp (Artemia franciscana) samples collected from GSL during summer time periods is likely due to the consumption of cyanobacteria produced in freshwater bays entering the lake. Supporting data collected from the outflow of Farmington Bay indicates decreasing trends in ??15N in particulate organic matter (POM) during the mid-summer time period, reflective of increasing proportions of cyanobacteria in algae exported to GSL on a seasonal basis. The C:N molar ratio of POM in outflow from Farmington Bay decreases during the summer period, supportive of the increased activity of N fixation indicated by decreasing ??15N in brine shrimp and POM. Although N fixation is only taking place in the relatively freshwater inflows to GSL, data indicate that influx of fresh water influences large areas of the lake. Separation of GSL into two distinct hydrologic and geochemical systems from the construction of a railroad causeway in the late 1950s has created a persistent and widespread anoxic layer in the southern part of GSL. This anoxic layer, referred to as the deep brine layer (DBL), has high rates of SO42 - reduction, likely increasing the Hg methylation capacity. High concentrations of methyl mercury (CH3Hg) (median concentration = 24 ng/L) were observed in the DBL with a significant proportion (31-60%) of total Hg in the CH3Hg form. Hydroacoustic and sediment-trap evidence indicate that turbulence introduced by internal waves generated during sustained wind events can temporarily mix the elevated CH3Hg concentrations in the DBL with the more biologically active upper brine layer (UBL). Brine shrimp collected during the summer/fall time periods contained elevated Hg concentrations (median concentration = 0.34 mg/kg, dry weight (dw)) relative to samples collected during the spring (median concentration < 0.2 mg/kg, dw). Higher Hg in brine shrimp during the summer and fall may reflect the higher proportion of adult brine shrimp during this time period, resulting in an increased time for bioaccumulation of Hg. Eared grebes (Podiceps nigricollis) consume brine shrimp from GSL during the fall molting period. Median Hg concentrations in eared grebe livers increased by almost three times during the 3-5 month fall molting period. Selected duck species utilizing GSL have consistently exceeded the US Environmental Protection Agency (USEPA) screening level for Hg (0.3 mg/kg Hg wet weight), resulting in the issuance of warnings against unlimited human consumption of breast muscle tissue.

Applied Geochemistry↗

USGS2024

River suspended-sand flux computation with uncertainty estimation using water samples and high-resolution ADCP measurements

Measuring suspended-sand fluxes in rivers remains a scientific challenge due to their high spatial and temporal variability. To capture the vertical and lateral gradients of concentration in the cross-section, measurements with point samples are performed. However, the uncertainty related to these measurements is rarely evaluated, as few studies of the major sources of error exist. Therefore, the aim of this study is to develop a method to determine the cross-sectional sand flux and estimate its uncertainty. This SDC (for sand discharge computing) method combines suspended-sand concentrations from point samples with ADCP (acoustic Doppler current profiler) high-resolution depth and velocity measurements. The MAP (for multitransect averaged profile) method allows obtaining an average of several ADCP transects on a regular grid, including the unmeasured areas. The suspended-sand concentrations are integrated vertically by fitting a theoretical exponential suspended-sand profile to the data using Bayesian modeling. The lateral integration is based on the water depth as a proxy for the local bed shear stress to evaluate the bed concentration and sediment diffusion along the river cross-section. The estimation of uncertainty combines ISO standards and semi-empirical methods with a Bayesian approach to estimate the uncertainty due to the vertical integration. The new method is applied to data collected in four rivers under various hydro-sedimentary conditions: the Colorado, Rhône, Isère, and Amazon rivers, with computed flux uncertainties ranging between 18 % and 32 %. The relative difference between the suspended-sand flux in 21 cases calculated with the proposed SDC method compared to the International Organization for Standardization (ISO) 4363 standard method ranges between − 40 % and + 23 %. This method that comes with a flexible, open-source code is the first to propose an applicable uncertainty estimation that could be adapted to other flux computation methods.

Earth Surface Dynamics↗

USGS2013

The effect of coal bed dewatering and partial oxidation on biogenic methane potential

Coal formation dewatering at a site in the Powder River Basin was associated with enhanced potential for secondary biogenic methane determined by using a bioassay. We hypothesized that dewatering can stimulate microbial activity and increase the bioavailability of coal. We analyzed one dewatered and two water-saturated coals to examine possible ways in which dewatering influences coal bed natural gas biogenesis by looking at differences with respect to the native coal microbial community, coal-methane organic intermediates, and residual coal oxidation potential. Microbial biomass did not increase in response to dewatering. Small Subunit rRNA sequences retrieved from all coals sampled represented members from genera known to be aerobic, anaerobic and facultatively anaerobic. A Bray Curtis similarity analysis indicated that the microbial communities in water-saturated coals were more similar to each other than to the dewatered coal, suggesting an effect of dewatering. There was a higher incidence of long chain and volatile fatty acid intermediates in incubations of the dewatered coal compared to the water-saturated coals, and this could either be due to differences in microbial enzymatic activities or to chemical oxidation of the coal associated with O 2 exposure. Dilute H 2 O 2 treatment of two fractions of structural coal (kerogen and bitumen + kerogen) was used as a proxy for chemical oxidation by O 2 . The dewatered coal had a low residual oxidation potential compared to the water-saturated coals. Oxidation with 5% H 2 O 2 did increase the bioavailability of structural coal, and the increase in residual oxidation potential in the water saturated coals was approximately equivalent to the higher methanogenic potential measured in the dewatered coal. Evidence from this study supports the idea that coal bed dewatering could stimulate biogenic methanogenesis through partial oxidation of the structural organics in coal once anaerobic conditions are restored.

Montana;Wyoming↗

USGS2018

Using mercury injection pressure analyses to estimate sealing capacity of the Tuscaloosa marine shale in Mississippi, USA: Implications for carbon dioxide sequestration

This work used mercury injection capillary pressure (MICP) analyses of the Tuscaloosa Group in Mississippi, including the Tuscaloosa marine shale (TMS), to assess their efficacy and sealing capacity for geologic carbon dioxide (CO 2 ) sequestration. Tuscaloosa Group porosity and permeability from MICP were evaluated to calculate CO 2 column height retention. TMS and Lower Tuscaloosa shale samples have, respectively, Swanson permeability values less than 0.003 md and 0.00245 md; porosity from 3.86% to 9.86% and 1.34% to 7.96%; median pore throat sizes from 0.00342 to 0.0111 μm and 0.00311 to 0.017 μm; and pore radii from 0.0130 to 0.152 μm and 0.0132 to 0.149 μm. Mercury entry pressures for the TMS and Lower Tuscaloosa range from 4.9 to 57.1 MPa and 5.0 to 56.3 MPa, respectively. Calculated CO 2 column heights that the TMS sample set can retain in the reservoir range from 23 to 255 m when the TMS is near 100% water saturation. Potential top seal leakage is more likely to be influenced by the numerous well penetrations through the confining system of the TMS rather than capillary failure. Results of this study demonstrate desirable sealing capacity of the TMS for geologic CO 2 sequestration in reservoir sandstones of the Lower Tuscaloosa and could provide an analogue to other potential CO 2 sequestration top seals.

Louisiana, Mississippi↗

USGS2022

Bathymetry retrieval from CubeSat image sequences with short time lags

The rapid expansion of CubeSat constellations could revolutionize the way inland and nearshore coastal waters are monitored from space. This potential stems from the ability of CubeSats to provide daily imagery with global coverage at meter-scale spatial resolution. In this study, we explore the unique opportunity to improve the retrieval of bathymetry offered by CubeSats, specifically those of the PlanetScope constellation. The orbital design of the PlanetScope constellation enables the acquisition of image sequences with short time lags (from seconds to hours). This characteristic allows multiple images to be captured during a short period of steady bathymetric conditions, especially in dynamic environments like rivers. We hypothesize that taking the ensemble mean of a CubeSat image sequence can enhance bathymetry retrieval compared to standard single-image analysis. Along with the existing optimal band ratio analysis (OBRA) algorithm, we also use a new neural network-based depth retrieval (NNDR) technique to infer bathymetry from both individual and time-averaged images. The two methodologies are evaluated using field data from five different river reaches with depths up to 15 m and both top-of-atmosphere (TOA) radiance and bottom-of-atmosphere (BOA) surface reflectance PlanetScope data products. Despite low spectral resolution and concerns about the radiometric quality of CubeSat imagery, accuracy assessment based on in-situ comparisons indicates the potential (0.52 < R 2 < 0.7 for the NNDR method) of PlanetScope imagery to retrieve depths up to ∼ 10 m in clear water conditions. The proposed image averaging consistently improves bathymetry retrieval over single image analysis. The NNDR technique was found to outperform OBRA, illustrating the importance of leveraging all spectral bands through machine learning approaches. TOA data provided more robust bathymetry results than BOA data for the OBRA technique, but the NNDR technique was minimally impacted by the type of data product.

International Journal of Applied Earth Observation↗

USGS1993

Analysis of summer phosphorus fluxes within the pelagic zone of Eau Galle Reservoir, Wisconsin

Major phosphorus (P) fluxes to and from the pelagic zone (i.e., open water region including epilimnion, metalimnion, and hypolimnion) were estimated from data collected over a 6 year period during the summer in Eau Galle Reservoir, Wisconsin. P inputs to the pelagic zone included profundal sediments, the watershed, groundwater, and transport of P from the littoral zone. P outputs from the pelagic zone included discharge from the reservoir, deposition, and transport of P to the littoral zone. Nighttime convective circulation was assumed to be the dominant mechanism of P exchange between the littoral and pelagic zones. Littoral P inputs, often neglected from budgetary analyses, accounted for 15% of the total measured P input and 25% of the internal P input to the pelagic zone. External P inputs were greatest, accounting for 42% of the total measured P input to the pelagic zone. These results emphasize the need for control of various sources of P inputs in the development of lake and reservoir management strategies.

Lake and Reservoir Management↗

USGS1978

Recognition of oxidized sulfide minerals as an exploration guide for uranium

The difference in color between tan to red oxidized sandstone and gray reduced sandstone on either side of the reduction-oxidation (redox) interface, which is- the locus of uranium concentration in roll-type deposits, has been noted and used locally as an exploration guide within known uranium districts. Reduced sandstone is characterized in many deposits by the presence of iron sulflde minerals (particularly marcasite and pyrite) that occur as replacements of and overgrowths on iron-titanium oxide minerals and plant debris and as cement of detrital grains. Oxidation of the sulfldes by oxygenated ground water forms yellow to red ferric oxide and ferric hydroxide phases ("limonite") that replace the FeS 2 minerals. Processes other than the oxidation of sulfldes, however, can cause reddening of clastic sediments without the creation of a redox boundary, and so color alone is not a sufficient condition by which to judge the potential for uranium ore in frontier areas. Ferric oxides that form by the oxidation of iron sulflde minerals can be distinguished from other forms of ferric oxide by reflection microscopic examination of polished grain mounts- and polished thin sections'. Diagnostic features of oxidized sulfldes are limonite pseudomorphs of sulfldes and limonite containing internal textures that mimic characteristic textures of previously sulfldized detrital phases. Recognition of oxidized sulfides by reflection microscopy, then, can distinguish oxidized sandstones, which might have a redox boundary downdip and which would therefore be favorable hosts for uranium concentration, from those without such potential.

Journal of Research of the U.S. Geological Survey↗

USGSDate not supplied

Effect on evaporation of releases from reservoirs on Salt River, Arizona

By means of the energy-budget method, measurements of evaporation losses from four reservoirs on Salt River , Ariz., were determined to range from 57.5 to 69.9 inches for the 12-month period April 1958 to March 1959. Water is withdrawn from Roosevelt Lake at considerable depth and released through three run-of-the- river reservoirs . Because the water released from Roosevelt Lake is cold, evaporation losses from the downstream reservoirs are considerably lower than those from Roosevelt Lake. Evaporation pan coefficients computed for the various reservoirs ranged from 0.53 to 0.65. A base evaporation rate was computed for each reservoir as the evaporation rate that would have occurred had there been no change in energy storage and the net advected energy equalled zero during the year.

Arizona↗

USGS1999

USGS international activities in coal resources

During the last 30 years the U.S. Geological Survey (USGS) has been engaged in coal exploration and characterization in more that 30 foreign countries, including India, Pakistan, China, Turkey, several Eastern European countries, Russia, and other former Soviet Union countries. Through this work, the USGS has developed an internationally recognized capability for assessing coal resources and defining their geochemical and physical characteristics. More recently, these data have been incorporated into digital databases and Geographic Information System (GIS) digital map products. The USGS has developed a high level of expertise in assessing the technological, economic, environmental, and human health impacts of coal occurrences and utilization based on comprehensive characterization of representative coal samples.

Fact Sheet↗

USGS2019

Understanding tidal marsh trajectories: Evaluation of multiple indicators of marsh persistence

Robust assessments of ecosystem stability are critical for informing conservation and management decisions. Tidal marsh ecosystems provide vital services, yet are globally threatened by anthropogenic alterations to physical and biological processes. A variety of monitoring and modeling approaches have been undertaken to determine which tidal marshes are likely to persist into the future. Here, we conduct the most robust comparison of marsh metrics to date, building on two foundational studies that had previously and independently developed metrics for marsh condition. We characterized pairs of marshes with contrasting trajectories (of marsh cover ) across six regions of the United States, using a combination of remote-sensing and field-based metrics. We also quantified decadal trends in marsh conversion to mudflat/open water at these twelve marshes. Our results suggest that metrics quantifying the distribution of vegetation across an elevational gradient represent the best indicators of marsh trajectories. The unvegetated to vegetated ratio and flood-ebb sediment differential also served as valuable indicators. No single metric universally predicted marsh trajectories, and therefore a more robust approach includes a suite of spatially integrated, landscape-scale metrics that are mostly obtainable from remote sensing. Data from surface elevation tables and marker horizons revealed that degrading marshes can have higher rates of vertical accretion and elevation gain than more intact counterparts, likely due to longer inundation times potentially combined with internal recycling of material. A high rate of elevation gain relative to local sea-level rise has been considered critical to marsh persistence, but our results suggest that it also may serve as a signature of degradation in marshes that have already begun to deteriorate. This investigation, with rigorous comparison and integration of metrics initially developed independently, tested at a broad geographic scale, provides a model for collaborative science to develop management tools for improving conservation outcomes.

Environmental Research Letters↗

USGS2024

Discovery and genomic characterization of a novel hepadnavirus from asymptomatic anadromous alewife (Alosa pseudoharengus)

The alewife ( Alosa pseudoharengus) is an anadromous herring that inhabits waters of northeastern North America. This prey species is a critical forage for piscivorous birds, mammals, and fishes in estuarine and oceanic ecosystems. During a discovery project tailored to identify potentially emerging pathogens of this species, we obtained the full genome of a novel hepadnavirus (ApHBV) from clinically normal alewives collected from the Maurice River, Great Egg Harbor River, and Delaware River in New Jersey, USA during 2015–2018. This previously undescribed hepadnavirus contained a circular DNA genome of 3146 nucleotides. Phylogenetic analysis of the polymerase protein placed this virus in the clade of metahepadnaviruses (family: Hepadnaviridae ; genus: Metahepadnavirus ). There was no evidence of pathology in the internal organs of infected fish and virions were not observed in liver tissues by electron microscopy. We developed a Taqman-based quantitative (qPCR) assay and screened 182 individuals collected between 2015 and 2018 and detected additional qPCR positives (n = 6). An additional complete genome was obtained in 2018 and it has 99.4% genome nucleotide identity to the first virus. Single-nucleotide polymorphisms were observed between the two genomes, including 7/9 and 12/8 synonymous vs nonsynonymous mutations across the polymerase and surface proteins, respectively. While there was no evidence that this virus was associated with disease in this species, alewives are migratory interjurisdictional fishes of management concern. Identification of microbial agents using de novo sequencing and other advanced technologies is a critical aspect of understanding disease ecology for informed population management.

New Jersey↗