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At least 1,081 records · Page 60Linked to original sources
USGS2017

Accurate aging of juvenile salmonids using fork lengths

Juvenile salmon life history strategies, survival, and habitat interactions may vary by age cohort. However, aging individual juvenile fish using scale reading is time consuming and can be error prone. Fork length data are routinely measured while sampling juvenile salmonids. We explore the performance of aging juvenile fish based solely on fork length data, using finite Gaussian mixture models to describe multimodal size distributions and estimate optimal age-discriminating length thresholds. Fork length-based ages are compared against a validation set of juvenile coho salmon, Oncorynchus kisutch , aged by scales. Results for juvenile coho salmon indicate greater than 95% accuracy can be achieved by aging fish using length thresholds estimated from mixture models. Highest accuracy is achieved when aged fish are compared to length thresholds generated from samples from the same drainage, time of year, and habitat type (lentic versus lotic), although relatively high aging accuracy can still be achieved when thresholds are extrapolated to fish from populations in different years or drainages. Fork length-based aging thresholds are applicable for taxa for which multiple age cohorts coexist sympatrically. Where applicable, the method of aging individual fish is relatively quick to implement and can avoid ager interpretation bias common in scale-based aging.

Fisheries Research↗
USGS2008

Short-term response of methane fluxes and methanogen activity to water table and soil warming manipulations in an Alaskan peatland

Growing season CH 4 fluxes were monitored over a two year period following the start of ecosystem-scale manipulations of water table position and surface soil temperatures in a moderate rich fen in interior Alaska. The largest CH 4 fluxes occurred in plots that received both flooding (raised water table position) and soil warming, while the lowest fluxes occurred in unwarmed plots in the lowered water table treatment. A combination of treatment and soil hydroclimate variables explained more than 70% of the variation in ln-transformed CH 4 fluxes, with mean daily water table position representing the strongest predictor. We used quantitative PCR of the α -subunit of mcr operon to explore the influence of soil climate manipulations on methanogen abundances. Methanogen abundances were greatest in warmed plots, and showed a positive relationship with mean daily CH 4 fluxes. Our results show that water table manipulations that led to soil inundation (flooding) had a stronger effect on CH 4 fluxes than water table drawdown. Seasonal CH 4 fluxes increased by 80–300% under the combined wetter and warmer soil climate treatments. Thus, while warming is expected to increase CH 4 emissions from Alaskan wetlands, higher water table positions caused by increases in precipitation or disturbances such as permafrost thaw that lead to thermokarst and flooding in wetlands will stimulate CH 4 emissions beyond the effects of soil warming alone. Consequently, we argue that modeling the effects of climate change on Alaskan wetland CH 4 emissions needs to consider the interactive effects of soil warming and water table position on CH 4 production and transport.

Alaska↗
USGS2024

Examining 22 years of ambient seismic wavefield at Mount St. Helens

An increase in seismic activity precedes most volcanic eruptions. Whereas event-based forecasting approaches have been successful, some eruptions remain unanticipated, resulting in casualties and damage. Our study leverages the recent advancements in ambient field seismology. We explore features extracted from continuous ambient fields using traditional methods, for example, peak ground velocity, peak ground acceleration, root mean square, root median square, real-time seismic amplitude measurement, and novel methods (displacement seismic amplitude ratio and spectral width). In addition, we explore unsupervised learning of higher order wavelet features using scattering networks. We find that combining all the methods was necessary to disentangle the effects of seismic sources from structural changes at Mount St. Helens. Although the ambient wavefield-based approach does not yield additional or more significant precursory signals than event-based methods at Mount St. Helens, our study demonstrates that the ambient wavefield provides supplementary information, mainly about structural changes and complements traditional methods. The ambient seismic wavefield offers additional insights into long-lasting processes. We find enhanced wave attenuation correlating with geochemical measurements. We interpret this as ongoing structural changes, such as dome growth or the evolution of the volcanic conduit system. On annual and decadal timescales, we interpret seasonal seismic attenuation in the shallow subsurface as groundwater fluctuations, corroborated by observations at the nearby Spirit Lake level. This multimethod approach at Mount St. Helens sheds light on a volcanic system’s underlying dynamics and structure.

Washington↗
USGS2024

Assessing community needs for terrestrial analog studies

Executive Summary The U.S. Geological Survey (USGS) developed and released a survey to assess the terrestrial analog needs of the planetary science community. The goal was to assess the current state of terrestrial analog studies and determine community needs related to the use of field sites for training and research, data dissemination and archiving, and sample collections. The survey was designed to gather feedback from community members who have a self-described interest in the use of terrestrial analogs. The web-based questionnaire contained a total of 33 questions and was designed to take <10 minutes to complete. The questionnaire was divided into four sections: (1) “Respondent Details,” (2) “Field Analog Use,” (3) “Data Portal Use,” and (4) “Geologic Materials Collection Use.” Comment boxes were provided for 12 of the 33 questions, which allowed respondents to provide more detailed comments to individual questions. The questionnaire received a total of 248 responses. We identified 21 notable findings which are matched with one or more recommendations to be addressed by the planetary science community. In general, the findings highlight the importance of terrestrial analog studies to the planetary science community. The findings address how and why the community uses terrestrial analogs, areas in which further support can lead to a greater return on investment, and how the community can better manage data and samples from these studies. The results from this survey identify a need for additional training opportunities and analog-focused workshops. There is a gap in formal education related to field techniques for a significant part of researchers who conduct fieldwork. There is also a subset of the community who are interested in conducting field-based studies but are, however, unaware of relevant sites and methods. Workshops would provide an opportunity for scientists at all career stages to share their results and discuss common challenges such as logistics, field safety, funding, and data and sample archiving. Trainings, workshops, and better communication may also lead to increased field-analog work at locations in closer proximity to home institutions, reducing costs associated with large field expeditions and ultimately leading to more available funding for more localized field studies. The survey also shows that the ability to archive a diverse array of field data is a major challenge for terrestrial studies and finds that existing practices are not compliant with National Aeronautics and Space Administration (NASA) data management policies. The survey points to a strong need for a central data repository, allowing for easier access to existing analog data and the archiving of new field data. The community would benefit from additional physical sample archiving, consolidated into several key institutions to promote easier access, such as NASA and USGS centers. Though scientists would still need to acquire their own samples in the field for certain studies, many studies would benefit from an archive of existing samples and associated data for widely used analog sites, reducing redundant sampling practices. This report finds that a coordinated effort to improve and standardize training, data archiving, sample curation, and communication regarding terrestrial analog studies will best serve the planetary science community in our exploration goals.

Open-File Report↗
USGS2017

Noble gas signatures in the Island of Maui, Hawaii: Characterizing groundwater sources in fractured systems

Uneven distribution of rainfall and freshwater scarcity in populated areas in the Island of Maui, Hawaii, renders water resources management a challenge in this complex and ill-defined hydrological system. A previous study in the Galapagos Islands suggests that noble gas temperatures (NGTs) record seasonality in that fractured, rapid infiltration groundwater system rather than the commonly observed mean annual air temperature (MAAT) in sedimentary systems where infiltration is slower thus, providing information on recharge sources and potential flow paths. Here we report noble gas results from the basal aquifer, springs, and rainwater in Maui to explore the potential for noble gases in characterizing this type of complex fractured hydrologic systems. Most samples display a mass-dependent depletion pattern with respect to surface conditions consistent with previous observations both in the Galapagos Islands and Michigan rainwater. Basal aquifer and rainwater noble gas patterns are similar and suggest direct, fast recharge from precipitation to the basal aquifer. In contrast, multiple springs, representative of perched aquifers, display highly variable noble gas concentrations suggesting recharge from a variety of sources. The distinct noble gas patterns for the basal aquifer and springs suggest that basal and perched aquifers are separate entities. Maui rainwater displays high apparent NGTs, incompatible with surface conditions, pointing either to an origin at high altitudes with the presence of ice or an ice-like source of undetermined origin. Overall, noble gas signatures in Maui reflect the source of recharge rather than the expected altitude/temperature relationship commonly observed in sedimentary systems.

Hawaii↗
USGS2008

Influence of perched groundwater on base flow

Analysis with a three‐dimensional variably saturated groundwater flow model provides a basic understanding of the interplay between streams and perched groundwater. A simplified, layered model of heterogeneity was used to explore these relationships. Base flow contribution from perched groundwater was evaluated with regard to varying hydrogeologic conditions, including the size and location of the fine‐sediment unit and the hydraulic conductivity of the fine‐sediment unit and surrounding coarser sediment. Simulated base flow was sustained by perched groundwater with a maximum monthly discharge in excess of 15 L/s (0.6 feet 3 /s) over the length of the 2000‐m stream reach. Generally, the rate of perched‐groundwater discharge to the stream was proportional to the hydraulic conductivity of sediment surrounding the stream, whereas the duration of discharge was proportional to the hydraulic conductivity of the fine‐sediment unit. Other aspects of the perched aquifer affected base flow, such as the depth of stream penetration and the size of the fine‐sediment unit. Greater stream penetration decreased the maximum base flow contribution but increased the duration of contribution. Perched groundwater provided water for riparian vegetation at the demand rate but reduced the duration of perched‐groundwater discharge nearly 75%.

Water Resources Research↗
USGS2012

Modeling thermal dynamics of active layer soils and near-surface permafrost using a fully coupled water and heat transport model

Thawing and freezing processes are key components in permafrost dynamics, and these processes play an important role in regulating the hydrological and carbon cycles in the northern high latitudes. In the present study, we apply a well-developed soil thermal model that fully couples heat and water transport, to simulate the thawing and freezing processes at daily time steps across multiple sites that vary with vegetation cover, disturbance history, and climate. The model performance was evaluated by comparing modeled and measured soil temperatures at different depths. We use the model to explore the influence of climate, fire disturbance, and topography (north- and south-facing slopes) on soil thermal dynamics. Modeled soil temperatures agree well with measured values for both boreal forest and tundra ecosystems at the site level. Combustion of organic-soil horizons during wildfire alters the surface energy balance and increases the downward heat flux through the soil profile, resulting in the warming and thawing of near-surface permafrost. A projection of 21st century permafrost dynamics indicates that as the climate warms, active layer thickness will likely increase to more than 3 meters in the boreal forest site and deeper than one meter in the tundra site. Results from this coupled heat-water modeling approach represent faster thaw rates than previously simulated in other studies. We conclude that the discussed soil thermal model is able to well simulate the permafrost dynamics and could be used as a tool to analyze the influence of climate change and wildfire disturbance on permafrost thawing.

Journal of Geophysical Research D: Atmospheres↗
USGS2018

A decade of remotely sensed observations highlight complex processes linked to coastal permafrost bluff erosion in the Arctic

Eroding permafrost coasts are indicators and integrators of changes in the Arctic System as they are susceptible to the combined effects of declining sea ice extent, increases in open water duration, more frequent and impactful storms, sea-level rise, and warming permafrost. However, few observation sites in the Arctic have yet to link decadal-scale erosion rates with changing environmental conditions due to temporal data gaps. This study increases the temporal fidelity of coastal permafrost bluff observations using near-annual high spatial resolution (&lt;1 m) satellite imagery acquired between 2008 and 2017 for a 9-km segment of coastline at Drew Point, Beaufort Sea coast, Alaska. Our results show that mean annual erosion for the 2007 to 2016 decade was 17.2 m yr&lt;sup&gt;-1&lt;/sup&gt;, which is 2.5 times faster than historic rates, indicating that bluff erosion at this site is likely responding to changes in the Arctic System. In spite of a sustained increase in decadal-scale mean annual erosion rates, mean open water season erosion varied from 6.7 m yr&lt;sup&gt;-1&lt;/sup&gt; in 2010 to more than 22.0 m yr&lt;sup&gt;-1&lt;/sup&gt; in 2007, 2012, and 2016. This variability provided a range of coastal responses through which we explored the different roles of potential environmental drivers. The lack of significant correlations between mean open water season erosion and the environmental variables compiled in this study indicates that we may not be adequately capturing the environmental forcing factors, that the system is conditioned by long-term transient effects or extreme weather events rather than annual variability, or that other not yet considered factors may be responsible for the increased erosion occurring at Drew Point. Our results highlight an increase in erosion at Drew Point in the 21st century as well as the complexities associated with unraveling the factors responsible for changing coastal permafrost bluffs in the Arctic.

Alaska↗
USGS2016

Deathcore, creativity, and scientific thinking

Background Major scientific breakthroughs are generally the result of materializing creative ideas, the result of an inductive process that sometimes spontaneously and unexpectedly generates a link between thoughts and/or objects that did not exist before. Creativity is the cornerstone of scientific thinking, but scientists in academia are judged by metrics of quantification that often leave little room for creative thinking. In many scientific fields, reductionist approaches are rewarded and new ideas viewed skeptically. As a result, scientific inquiry is often confined to narrow but safe disciplinary ivory towers, effectively preventing profoundly creative explorations that could yield unexpected benefits. New information This paper argues how apparently unrelated fields specifically music and belief systems can be combined in a provocative allegory to provide novel perspectives regarding patterns in nature, thereby potentially inspiring innovation in the natural, social and other sciences. The merger between basic human tensions such as those embodied by religion and music, for example the heavy metal genre of deathcore, may be perceived as controversial, challenging, and uncomfortable. However, it is an example of moving the thinking process out of unconsciously established comfort zones, through the connection of apparently unrelated entities. We argue that music, as an auditory art form, has the potential to enlighten and boost creative thinking in science. Metal, as a fast evolving and diversifying extreme form of musical art, may be particularly suitable to trigger surprising associations in scientific inquiry. This may pave the way for dealing with questions about what we don´t know that we don´t know in a fast-changing planet.

Research Ideas and Outcomes↗
USGS2019

Sampling and analysis frameworks for inference in ecology

1. Reliable statistical inference is central to ecological research, much of which seeks to estimate population attributes and their interactions. The issue of sampling design and its relationship to inference has become increasingly important due to rapid proliferation of modeling methodology (line transect modeling, capture-recapture, estimation of occurrence, model selection procedures, hierarchical modeling) and new sampling approaches (adaptive sampling, other specialized designs). It is important for ecologists using these advanced methods to be aware of how the linkages between sample selection and data analysis can potentially affect inference. 2. We examine design-based and model-based inference frameworks for ecological data collected randomly, purposively, or opportunistically. We elucidate differences in the probability structures for data arising from these frameworks, clarify the assumptions that underlie them, and demonstrate their differences. 3. Design-based inference builds on a probability structure inherited from randomized data collection, whereas model-based inference relies on an assumed stochastic model of the data. By itself, a design-based approach is of limited value for inferences about causal hypotheses. In contrast, model-based inference is dependent on a conditionality principle that can seldom be shown to be met for an ecological system. We describe the conditions under which one can safely ignore sampling design in model-based analysis, along with inferential implications if these conditions are not met. The special case of opportunistic sampling is discussed. 4. We present a combined framework that takes advantage of both approaches to inference, and provides a robust methodology that can deal with the modeling of sampling problems such as nondetection and misclassification, as well as the exploration of causal hypotheses. The combined framework can be useful for identifying optimal sampling strategies. 5. Each approach to inference has its strengths and weaknesses, and practitioners should be aware of these in order to tailor designs and analyses to specific questions. We use the approaches and their underlying rationales to provide guidelines for choosing designs and estimators for reliable inference.

Methods in Ecology and Evolution↗
USGS2015

Coevolution of bed surface patchiness and channel morphology: 2. Numerical experiments

In gravel bed rivers, bed topography and the bed surface grain size distribution evolve simultaneously, but it is not clear how feedbacks between topography and grain sorting affect channel morphology. In this, the second of a pair of papers examining interactions between bed topography and bed surface sorting in gravel bed rivers, we use a two-dimensional morphodynamic model to perform numerical experiments designed to explore the coevolution of both free and forced bars and bed surface patches. Model runs were carried out on a computational grid simulating a 200 m long, 2.75 m wide, straight, rectangular channel, with an initially flat bed at a slope of 0.0137. Over five numerical experiments, we varied (a) whether an obstruction was present, (b) whether the sediment was a gravel mixture or a single size, and (c) whether the bed surface grain size feeds back on the hydraulic roughness field. Experiments with channel obstructions developed a train of alternate bars that became stationary and were connected to the obstruction. Freely migrating alternate bars formed in the experiments without channel obstructions. Simulations incorporating roughness feedbacks between the bed surface and flow field produced flatter, broader, and longer bars than simulations using constant roughness or uniform sediment. Our findings suggest that patches are not simply a by-product of bed topography, but they interact with the evolving bed and influence morphologic evolution.

Journal of Geophysical Research F: Earth Surface↗
USGS2010

Exploring the limits of identifying sub-pixel thermal features using ASTER TIR data

Understanding the characteristics of volcanic thermal emissions and how they change with time is important for forecasting and monitoring volcanic activity and potential hazards. Satellite instruments view volcanic thermal features across the globe at various temporal and spatial resolutions. Thermal features that may be a precursor to a major eruption, or indicative of important changes in an on-going eruption can be subtle, making them challenging to reliably identify with satellite instruments. The goal of this study was to explore the limits of the types and magnitudes of thermal anomalies that could be detected using satellite thermal infrared (TIR) data. Specifically, the characterization of sub-pixel thermal features with a wide range of temperatures is considered using ASTER multispectral TIR data. First, theoretical calculations were made to define a “thermal mixing detection threshold” for ASTER, which quantifies the limits of ASTER's ability to resolve sub-pixel thermal mixing over a range of hot target temperatures and % pixel areas. Then, ASTER TIR data were used to model sub-pixel thermal features at the Yellowstone National Park geothermal area (hot spring pools with temperatures from 40 to 90 °C) and at Mount Erebus Volcano, Antarctica (an active lava lake with temperatures from 200 to 800 °C). Finally, various sources of uncertainty in sub-pixel thermal calculations were quantified for these empirical measurements, including pixel resampling, atmospheric correction, and background temperature and emissivity assumptions.

Journal of Volcanology and Geothermal Research↗
USGS2026

Ground-motion simulations for the 2024 Mw 4.8 Tewksbury, New Jersey, earthquake

Ground-motion simulations of notable earthquakes in the central and eastern United States are limited and typically assume one-dimensional (1D) Earth structure. In this study, we use a three-dimensional (3D) seismic velocity model to better constrain the depth and focal mechanism of the April 5th, 2024, moment magnitude 4.8 Tewksbury earthquake and investigate the spatial variability of earthquake ground motions and the effects of nearby sedimentary basins. We perform earthquake ground-motion simulations up to 0.5 Hz using the 3D spectral-element wave-propagation solver SPECFEM3D over a region 280-km wide by 260-km long by 77-km deep. Topography and subsurface geophysical structure are assigned using the U.S. Geological Survey National Crustal Model with a minimum shear-wave velocity of 200 m/s. We use earthquake time series from 13 broadband seismic stations in the region that have a uniform azimuthal distribution and epicentral distances ranging from 76 to 131 km to compare with synthetics and explore the effects of 1D versus 3D seismic structure on focal mechanism and depth solutions. Ground-motion intensity metrics are also presented relative to the NGA-East ground-motion models (GMMs) currently used in seismic hazard assessments for the region. We find that the 3D model, which reveals a wide spatial variability of period-dependent ground motions, yields better predictions of earthquake ground motions relative to the 1D model and the NGA-East ergodic ground-motion model, with 76 percent reduction of residual variance in observed ground motions averaged over 3-, 5-, 7-, and 10-second periods. Use of the 3D model to solve for a focal mechanism yields a shallower focal depth at 4 km and a shallower east-dipping focal plane relative to the U.S. Geological Survey regional moment tensor and Global Centroid Moment Tensor. Our study demonstrates that use of 3D seismic velocity models can improve estimates of earthquake focal mechanisms, ground motions, and seismic hazard.

New Jersey↗
USGS2022

Assembling a safe and effective toolbox for integrated flea control and plague mitigation: Fipronil experiments with prairie dogs

Background Plague, a widely distributed zoonotic disease of mammalian hosts and flea vectors, poses a significant risk to ecosystems throughout much of Earth. Conservation biologists use insecticides for flea control and plague mitigation. Here, we evaluate the use of an insecticide grain bait, laced with 0.005% fipronil (FIP) by weight, with black-tailed prairie dogs (BTPDs, Cynomys ludovicianus ). We consider safety measures, flea control, BTPD body condition, BTPD survival, efficacy of plague mitigation, and the speed of FIP grain application vs. infusing BTPD burrows with insecticide dusts. We also explore conservation implications for endangered black-footed ferrets ( Mustela nigripes ), which are specialized predators of Cynomys . Principal findings During 5- and 10-day laboratory trials in Colorado, USA, 2016–2017, FIP grain had no detectable acute toxic effect on 20 BTPDs that readily consumed the grain. During field experiments in South Dakota, USA, 2016–2020, FIP grain suppressed fleas on BTPDs for at least 12 months and up to 24 months in many cases; short-term flea control on a few sites was poor for unknown reasons. In an area of South Dakota where plague circulation appeared low or absent, FIP grain had no detectable effect, positive or negative, on BTPD survival. Experimental results suggest FIP grain may have improved BTPD body condition (mass:foot) and reproduction (juveniles:adults). During a 2019 plague epizootic in Colorado, BTPDs on 238 ha habitat were protected by FIP grain, whereas BTPDs were nearly eliminated on non-treated habitat. Applications of FIP grain were 2–4 times faster than dusting BTPD burrows. Significance Deltamethrin dust is the most commonly used insecticide for plague mitigation on Cynomys colonies. Fleas on BTPD colonies exhibit the ability to evolve resistance to deltamethrin after repeated annual treatments. Thus, more tools are needed. Accumulating data show orally-delivered FIP is safe and usually effective for flea control with BTPDs, though potential acute toxic effects cannot be ruled out. With continued study and refinement, FIP might be used in rotation with, or even replace deltamethrin, and serve an important role in Cynomys and black-footed ferret conservation. More broadly, our stepwise approach to research on FIP may function as a template or guide for evaluations of insecticides in the context of wildlife conservation.

South Dakota↗
USGS2008

Relative importance of natural disturbances and habitat degradation on snail kite population dynamics

Natural disturbances and habitat degradation are major factors influencing the dynamics and persistence of many wildlife populations, yet few large-scale studies have explored the relative influence of these factors on the dynamics and persistence of animal populations. We used longterm demographic data and matrix population models to examine the potential effects of habitat degradation and natural disturbances on the dynamics of the endangered snail kite Rostrhamus sociabilis in Florida, USA. We found that estimates of stochastic population growth rate were low (0.90). Population growth rate (??) during the first half or our study period (1992 to 1998) was substantially greater than during the second half (1999 to 2005). These 2 periods were characterized by contrasting hydrological conditions. Although ?? was most sensitive to changes in adult survival, the analysis of life table response experiments revealed that a reduction in fertility of kites accounted for >80% of the observed decline in population growth rate. We examined the possibility that the reduction in ?? was caused by (1) habitat degradation due to management, (2) an increase in frequency of moderate drying events in recent years, and (3) both habitat degradation and an increase in frequency of moderate drying events. Our results suggest that both factors could potentially contribute to a large decrease in population growth rate. Our study highlights the importance of simultaneously considering short- and long-term effects of disturbances when modeling population dynamics. Indeed, focusing exclusively on one type of effect may be misleading to both our understanding of the ecological dynamics of the system and to management. The relevance of our results to management is heightened because the snail kite has been selected as a key performance measure of one of the most ambitious ecosystem restoration projects ever undertaken. ?? Inter-Research 2008.

Endangered Species Research↗
USGS2020

Coordinated river infrastructure decisions improve net social-ecological benefits

We explore the social, ecological, economic, and technical dimensions of sustainable river infrastructure development and the potential benefits of coordinating decisions such as dam removal and stream crossing improvement. Dam removal is common practice for restoring river habitat connectivity and ecosystem health. However, stream crossings such as culverts are often 15 times more abundant than dams and may pose similar ecological impacts. Using multi-objective optimization for a model system of 6100 dams and culverts in Maine, USA, we demonstrate substantial benefit-cost improvements provided by coordinating habitat connectivity decisions. Benefit-cost efficiency improves by two orders of magnitude when coordinating more decisions across wider areas, but this approach may cause inequitable resource distribution. Culvert upgrades improve roadway safety and habitat connectivity, creating cost-effective opportunities for coordinating and cost-sharing projects between conservationists and safety managers. Benefit-cost trends indicate significant overlaps in habitat and safety goals, encouraging flexible stakeholder collaborations and cost-sharing strategies.

Maine↗
USGS2020

Using thermal infrared cameras to detect avian chicks at various distances and vegetative coverages

Population monitoring of nesting waterbirds often involves frequent entries into the colony, but alternative methods such as local remotely sensed thermal imaging may help reduce disturbance while providing a cost-effective way to survey breeding populations. Such an approach can have high initial costs, however, which may have reduced the number of studies investigating functionality of paired thermal infrared camera and small unmanned aerial systems. Here, we take the first step of exploring the ability of two thermal infrared cameras to detect an avian chick under varying vegetative cover and distances, preceding field-mounting applications on a small unmanned aerial system. We created seven “bioboxes” to simulate a range of natural vegetation types and densities for a globally important colonial ground-nesting waterbird species, the common tern Sterna hirundo . We placed a juvenile chicken Gallus gallus (surrogate for the locally endangered common tern) in each box, and we tested two market-accessible infrared cameras (produced by FLIR Systems and Infrared Cameras, Inc.) at five elevations using a stationary boom (maximum height = 12 m). We applied computer-based digital thresholding to collected images, identifying pixels meeting one of seven threshold values. The chick was visible from at least one threshold value in 19 and 31 of 35 processed by the FLIR Systems and Infrared Cameras, respectively. Percentage of the chick identified across thresholds was generally highest at lower threshold values and elevations and decreased as elevation and threshold increased; however, the relative importance of each variable changed dramatically across bioboxes and camera types. Ability to detect a chick from processed images generally decreased with increasing elevation, and although we made no quantitative comparisons among boxes, detectability appeared greatest in images from both cameras when little or no vegetation was present. Interestingly, no single threshold value was best for all bioboxes. We observed notable differences between cameras including visual resolution of detected temperature differentials and image processing speed. Results of this controlled study show promise for the use of thermal infrared systems for detecting cryptic species in vegetation. Future research should work to combine thermal infrared and visual sensors with small unmanned aerial systems to test applicability in a mobile field application.

Journal of Fish and Wildlife Management↗
USGS2000

Map of Distribution of Bottom Sediments on the Continental Shelf, Gulf of Alaska

Introduction The U.S. Geological Survey has a long history of exploring marine geology in the Gulf of Alaska. As part of a cooperative program with other federal and state agencies, the USGS is investigating the relations between ocean-floor geology and benthic marine biohabitats. This bottom sediment map, compiled from published literature will help marine biologists develop an understanding of sea-floor geology in relation to various biological habitats. The pattern of sea-floor sedimentation and bottom morphology in the Gulf of Alaska reflects a complex interplay of regional tectonism, glacial advances and retreats, oceanic and tidal currents, waves, storms, eustatic change, and gravity-driven processes. This map, based on numerous cruises during the period of 1970-1996, shows distribution of bottom sediments in areas of study on the continental shelf. The samples were collected with piston, box, and gravity corers, and grab samplers. The interpretations of sediment distribution are the products of sediment size analyses combined with interpretations of high-resolution seismic reflection profiles. The sea floor was separated into several areas as follows: Cook Inlet -- Hazards studies in this embayment emphasized sediment distribution, sediment dynamics, bedforms, shallow faults, and seafloor stability. Migrating mega-sandwaves, driven by strong tidal currents, influence seabed habitats and stability of the seafloor, especially near pipelines and drilling platforms. The coarseness of the bottom sediment reinforces the influence of the strong tidal currents on the seafloor habitats. Kodiak Shelf -- Tectonic framework studies demonstrate the development of an accretionary wedge as the Pacific Plate underthrusts the Alaskan landmass. Seismic data across the accretionary wedge reveal anomalies indicative of fluid/gas vent sites in this segment of the continental margin. Geologic hazards research shows that movement along numerous shallow faults poses a risk to sea floor structures. Sea-floor sediment on shallow banks is eroded by seasonal wave-generated currents. The winnowing action of the large storm waves results in concentrations of gravel over broad segments of the Kodiak shelf. Northeastern Gulf of Alaska -- Tectonic framework studies demonstrate that rocks of distant origin (Yakutat terrane) are currently attached to and moving with the Pacific Plate, as it collides with and is subducted beneath southern Alaska. This collision process has led to pronounced structural deformation of the continental margin and adjacent southern Alaska. Consequences include rapidly rising mountains and high fluvial and glacial sedimentation rates on the adjacent margin and ocean floor. The northeastern Gulf of Alaska shelf also has concentrations of winnowed (lag) gravel on Tarr Bank and on the outer shelf southeast of Yakutat Bay. Between Kayak Island and Yakutat Bay the outer shelf consists of pebbly mud (diamict). This diamict is a product of glacial marine sedimentation during the Pleistocene and is present today as a relict sediment. A prograding wedge of Holocene sediment consisting of nearshore sand grading seaward into clayey silt and silty clay covers the relict pebbly mud to mid-shelf and beyond. Shelf and slope channel systems transport glacially derived sediment across the continental margin into Surveyor Channel, an abyssal fan and channel system that reaches over 1,000 km to the Aleutian Trench.

Miscellaneous Field Studies Map↗