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USGS2024

Physics to fish—Understanding the factors that create and sustain native fish habitat in the San Francisco Estuary

Executive Summary The Bureau of Reclamation (Reclamation) operates the Central Valley Project (CVP), one of the nation’s largest water projects. Reclamation has an ongoing need to improve the scientific basis for adaptive management of the CVP and, by extension, joint operations with California’s State Water Project. The U.S. Geological Survey (USGS) works cooperatively with the Bureau of Reclamation to provide scientific support for the management of Reclamation’s CVP project. Major habitat restoration efforts and a new water-diversion point are planned to benefit delta smelt ( Hypomesus transpacificus ) and other species of concern while ensuring the reliability of water supply. In addition, various flow actions and management activities have been identified as possible methods to increase populations of delta smelt and salmonid ( Oncorhynchus spp.) runs of concern. The overarching goal of this cooperative project was to provide Reclamation with the scientific information needed to evaluate the efficacy of ongoing and future adaptive management actions and to improve the scientific basis for more flexible CVP operations that would achieve water-supply reliability and fish protection. The research and monitoring described in this report comprises the period 2015–19 and focuses on management issues related to native fish species of concern, especially delta smelt. Conserving the delta smelt population while providing a reliable water supply is a primary management and policy issue in California. Our approach for this cooperative project is based on the “physics to fish” concept, the idea that high-quality habitat is generated and sustained by the interaction between physical processes and the landscape. These interactions create a template for chemical and biological processes that can change across a variety of spatial and temporal scales. Following this concept, this project (hereafter referred to as “the physics to fish project”) included monitoring and studies of water flows, sediments, water quality, and invertebrate and fish dynamics across a range of spatial and temporal scales and in regions relevant to resource managers tasked with managing water supplies and ecosystem health in the San Francisco Estuary. The intent of this approach was to document the habitat conditions, important processes, and interactions among them that create high-quality habitat for native fishes so that the likely effects of future management actions (for example, habitat restoration) can be objectively assessed at the local (site-specific), regional (within subregions of the estuary), and landscape (across the entire estuary and beyond) scales. Hydrodynamically, the upper estuary (landward of Carquinez Strait) is characterized by a fixed volume of tidally exchanged water (for example, tidal prism) that interacts with the existing channel network and bathymetry to create regions with differing hydrodynamics. Our results indicate that careful study of construction or reoperation of existing infrastructure to perform management actions can help (1) improve the accuracy of hydrodynamic models; (2) further understanding of ecological effects; and (3) enhance abilities to predict ecological outcomes. At the local scale, we developed a new concept called the Lagrangian to Eulerian (LE) ratio that can be used as a tool for understanding the importance of various hydrodynamic processes in specific channels or channel networks and for forecasting transport dynamics. Channels with LE ratios<1 in a channel network or in a dead-end slough are hydrodynamically able to develop an exchange zone between two parcels of water that may have different chemical and physical properties. In a dead-end channel, there is a landward region with long residence time (no-exchange zone) and a seaward region with short residence time (high-exchange zone) that are well mixed with seaward waters. At the transition (exchange zone) between the high and no-exchange regions, a gradient will form in water-quality constituents that differ in concentration between the landward and seaward waters. Turbidity affects fish habitat and has declined through time in the San Francisco Estuary. Average turbidity across the Sacramento–San Joaquin Delta (hereafter referred to as “the Delta”) is dependent on annual hydrology. In dry years, the region around Cache Slough (known regionally as the “Cache Slough Complex”) in the northern Delta is generally more turbid than Suisun Bay and the lower Sacramento River. When the Yolo By-Pass (known regionally as “Yolo Bypass”), a large flood bypass that runs parallel to the Sacramento River in the northern Delta, is not flooding and river flows are lower, sediment is usually transported into the Cache Slough Complex because flood tides dominate ebb tides, resulting in transport of suspended sediment from seaward areas of the upper estuary into the Cache Slough Complex. These hydrodynamic conditions also favor the formation of turbidity maximums (TMs) in the Cache Slough Complex. The TMs are areas of higher suspended-sediment concentration, providing higher-turbidity habitat favored by some fishes, including delta smelt, and they can also concentrate other constituents, including phytoplankton and organic carbon that can be important in food webs. Pelagic primary production by phytoplankton is the basis for Delta food webs supporting pelagic fishes such as delta smelt; however, phytoplankton abundance in the Delta has declined during recent decades. We examined how nutrients, hydrodynamics, and other factors affect phytoplankton blooms. Based on our results, we developed three new concepts of phytoplankton bloom formation in the Delta, each associated with a distinct set of hydrologic conditions. First, productivity cascades highlighted how local processes can contribute to phytoplankton blooms observed at the regional scale. Second, we observed phytoplankton blooms in the upper San Francisco Estuary that were associated with transport out of Yolo By-Pass (transport blooms). Third, we also documented a series of phytoplankton blooms that were in the confluence area at the landward edge of Suisun Bay. The conditions leading to creation of confluence phytoplankton blooms are not yet understood, but the confluence region connects the Cache Slough Complex with Suisun Marsh. Therefore, blooms in this area have the potential to spread to large areas of the Delta. At the landscape scale, the distribution of the invasive clams ( Potamocorbula amurensis and Corbicula fluminea , hereafter referred to as “ Corbicula ”) is driven by salinity. At smaller spatial scales, the distribution of either species is sensitive to multiple factors affecting survival and reproduction, complicating efforts to predict distribution and abundance without considering local-scale conditions across the area of interest. In the Cache Slough Complex, the area landward of the exchange zone in regions with LE ratio<1 were characterized by low abundances of Corbicula probably because recruits from seaward areas are not transported past the exchange zone and because there are no landward tributaries with adult Corbicula to provide an upstream source of recruits. Corbicula biomass was highest near or downstream from the exchange zone consistent with Corbicula grazing on phytoplankton produced in the exchange zone or transported from the no-exchange zone. The severity of Corbicula grazing could be reduced by manipulating the hydrodynamic characteristics of waterways; however, the beneficial and harmful effects on the organisms meant to benefit from increased phytoplankton production, including zooplankton and fish species of concern, should be thoroughly examined before manipulating hydrodynamic characteristics. The distribution of fishes at the landscape scale is generally driven by the position of the salinity field in the estuary. The physics to fish project compared distributions of fishes at Ryer Island, a tidal wetland in Suisun Bay and a region of variable salinity, with fish distributions at the Cache Slough Complex, a freshwater region. At Ryer Island, there was an absence of freshwater invasive species and an abundance of native species, such as Sacramento splittail ( Pogonichthys macrolepidotus ), tule perch ( Hysterocarpus traskii ), and Sacramento pikeminnow ( Ptychocheilus grandis ). The native species were almost exclusively captured in wetland and nearshore shallow-water habitat regardless of water-quality conditions. In the Cache Slough Complex, our regional scale objective was to elucidate how hydrodynamic-physical habitat interactions drive fish-community structure. Our studies showed that dendritic channel systems were better able to support native species, while intertidal habitats supported those species best able to exploit the transient character of the habitat. Habitats upstream from the exchange zone were especially important in supporting high numbers of native fishes relative to within or downstream from the exchange zone. Many of the native species were associated with tidal marsh in the no-exchange zone. More pelagic-oriented, mobile species, such as Striped Bass ( Morone saxatilis ), threadfin shad ( Dorosoma petenense ), and Sacramento pikeminnow, were more affected by water-quality conditions, such as turbidity. The physics to fish concept developed in this project provides a framework for designing individual projects and for considering the cumulative effects of multiple projects in a region, using the LE ratio as a guiding metric. The physics to fish concept may also provide a suitable framework for coordinating management actions. Tidal wetlands can function in several ways in the hydrodynamic framework. Relatively small tidal wetlands with short channel networks and with LE ratios>1 are not able to maintain a landward no-exchange zone or an exchange zone. This likely means that any contributions to pelagic food webs would be limited to resources derived from wetland vegetation, which can include dissolved and particulate organic matter (detritus) and populations of consumers that can increase in abundance based on those resources. The fate of the contributed production from these channels depends on the characteristics of the receiving waters seaward of the tidal wetland. If these channels join a large system such as Suisun Bay, then any contribution is likely to be rapidly dispersed in the larger volume; however, the channel junction might provide a focal point for consumers, such as fishes, to congregate and feed on material leaving the wetland on ebb tides before it is dispersed in the larger volume. Fishes might also access these resources by entering the wetland. The physics to fish project has established a foundation and several new concepts for understanding how habitat restoration can benefit native fish populations at the local and regional levels. Many of the ideas regarding habitat restoration and channel modifications outlined in this report could help guide management actions that could improve conditions for native fishes at little or no water cost beyond water already dedicated to other management actions. A complete list of products originating from this work is provided in appendix 1.

California↗

USGS2020

Assessing uranium and select trace elements associated with breccia pipe uranium deposits in the Colorado River and main tributaries in Grand Canyon, USA

Assessing chemical loading from streams in remote, difficult-to-access watersheds is challenging. The Grand Canyon area in northern Arizona, an international tourist destination and sacred place for many Native Americans, is characterized by broad plateaus divided by canyons as much as two-thousand meters deep and hosts some of the highest-grade uranium deposits in the U.S. From 2015–2018 major surface waters in Grand Canyon were monitored for select elements associated with breccia-pipe uranium deposits in the area, including uranium, arsenic, cadmium, and lead. Dissolved constituents in the Colorado River were monitored upstream (Lees Ferry), in the middle (Phantom Ranch), and downstream (Diamond Creek) of uranium mining areas. Concentrations of uranium, arsenic, cadmium, and lead at these main-stem sites varied little during the study period and were all well below human health and aquatic life benchmark criteria (30, 10, 5, and 15 μg/L maximum contaminant levels and 15, 150, 0.8, and 3.1 μg/L aquatic life criteria, respectively). Additionally, dissolved and sediment-bound constituents were monitored during a wide range of streamflow conditions at Little Colorado River, Kanab Creek, and Havasu Creek tributaries, whose watersheds have experienced different levels of uranium mining activities over time. Samples from the tributary sites contained ≤3.8 μg/L of dissolved cadmium and lead, and ≤17 μg/L of dissolved uranium. Dissolved arsenic also was mostly below human and aquatic life criteria at Little Colorado River and Kanab Creek; however, 63% of water samples from Havasu Creek were above the maximum contaminant level for arsenic. Arsenic in suspended sediment was greater than sediment quality guidelines in 9%, 35%, and 35% of samples from Little Colorado River, Kanab Creek, and Havasu Creek, respectively. At the concentrations observed during this study, tributaries contributed on average only about 0.12 μg/L of arsenic and 0.03 μg/L of uranium to the main-stem river. This study demonstrates how chemical loading from mined watersheds may be reliably assessed across a wide range of flow conditions in challenging locations.

Arizona↗

USGS2010

Groundwater quality in the Lower Hudson River Basin, New York, 2008

Water samples were collected from 32 production and domestic wells in the study area from August through November 2008 to characterize the groundwater quality. The study area, which covers 5,607 square miles, encompasses the part of the Lower Hudson River Basin that lies within New York plus the parts of the Housatonic, Hackensack, Bronx, and Saugatuck River Basins that are in New York. The study area is underlain by mainly clastic bedrock, predominantly shale, with carbonate and crystalline rock present locally. The bedrock is generally overlain by till, but surficial deposits of saturated sand and gravel are present in some areas. Of the 32 wells sampled, 16 were finished in sand and gravel deposits and 16 were finished in bedrock. The samples were collected and processed by standard U.S. Geological Survey procedures and were analyzed for 225 physiochemical properties and constituents, including major ions, nutrients, trace elements, radon-222, pesticides, and volatile organic compounds (VOCs); indicator bacteria were collected and analyzed by New York State Department of Health procedures. Water quality in the study area is generally good, but concentrations of some constituents exceeded current or proposed Federal or New York State primary or secondary drinking-water standards; the standards exceeded were color (2 samples), pH (6 samples), sodium (8 samples), fluoride (1 sample), aluminum (3 samples), arsenic (1 sample), iron (7 samples), manganese (14 samples), radon-222 (17 samples), tetrachloroethene (1 sample), and bacteria (7 samples). The pH of all samples was typically neutral or slightly basic (median 7.2); the median water temperature was 11.8 degrees C. The ions with the highest concentrations were bicarbonate [median 167 milligrams per liter (mg/L)] and calcium (median 38.2 mg/L). Groundwater in the study area ranged from very soft to very hard, but more samples were classified as very hard (181 mg/L as CaCO3 or more) than soft (60 mg/L as CaCO3 or less); the median hardness was 140 mg/L as CaCO3. The maximum concentration of nitrate plus nitrite was 2.38 mg/L as nitrogen, which did not exceed established drinking-water standards for nitrate plus nitrite (10 mg/L as nitrogen). The trace elements with the highest concentrations were strontium [median 189 micrograms per liter ((u or mu)g/L)] and barium (median 50.6 (u or mu)g/L). The highest radon-222 activities were in samples from crystalline bedrock wells [maximum 13,800 picocuries per liter (pCi/L)]. Seventeen samples had radon-222 activities that exceeded a proposed U.S. Environmental Protection Agency (USEPA) drinking-water standard of 300 pCi/L; activities in two samples exceeded a proposed alternative drinking-water standard of 4,000 pCi/L. Ten pesticides and pesticide degradates were detected among 14 samples at concentrations of 0.183 (u or mu)g/L or less; most were herbicides or their degradates. Eight VOCs were detected among six samples; these included solvents, gasoline components, and a trihalomethane. Total coliform bacteria were detected in seven samples; fecal coliform bacteria, including Escherichia coli, were detected in one sample.

Open-File Report↗

USGS2002

Biomonitoring of Environmental Status and Trends (BEST) Program: Environmental contaminants and their effects on fish in the Mississippi River Basin

We collected, examined, and analyzed 1378 fish of 22 species from 47 sites in the Mississippi River basin (MRB) during 1995 and from a reference site in 1996. The sampling sites in the MRB represented National Contaminant Biomonitoring Program (NCBP) stations situated at key points on major rivers and National Water- Quality Assessment Program (NAWQA) stations located on lower-order rivers and streams in the Eastern Iowa Basins (EIB) and Mississippi Embayment (MSE) Study Units. The reference site was the water supply system of the USGS-Leetown Science Center in rural Jefferson County, WV. Common carp (Cyprinus carpio; carp) and black basses (Micropterus spp.; bass), the targeted species, together represented 82% of the fish collected. Each fish was examined in the field for externally and internally visible gross lesions, selected organs were weighed to compute various ponderal and organo-somatic indices, and selected tissues and fluids were obtained and preserved for analysis of biomarkers. Fish health indicators included splenic macrophage aggregates, lysozyme activity, and hispathological analysis of liver, kidney, and other tissues. Reproductive biomarkers included analysis of plasma concentrations of vitellogenin (vtg) and the sex steroid hormones 17-estradiol (E2) and 11-ketotestosterone (11- kt); and the histological determination of percent oocyte atresia (in female fish) and gonadal stage. Hepatic ethoxyresorufin O-deethylase (EROD) activity was also measured. Composite samples of whole fish from each station were grouped by species and gender and analyzed for persistent organochlorine and elemental contaminants and for dioxin-like activity (TCDD-EQ) using the H4IIE rat hepatoma cell bioassay. Organochlorine and inorganic contaminant concentrations in fish were generally low relative to historical levels at most sites, but remained present at concentrations representing threats to piscivorous wildlife in some locations. Toxaphene and DDT (mostly as p,p?-DDE) concentrations remained elevated in fish from the cottongrowing regions of the lower Mississippi valley, and were generally greater in the smaller streams draining agricultural areas (that is, in the MSE Study Unit) than at large river sites. Cyclodiene pesticide concentrations were also greatest in the EIB Study Unit and elsewhere in the corn-growing regions of the mid-MRB. Former point-sources of organochlorine pesticides also remained evident, especially in the Mississippi River near Memphis, TN. Consistent with previous findings, total PCB concentrations tended to be greatest (1-3 g/g) in the industrialized and urbanized Ohio River and Upper Mississippi sub-basins and at Memphis, TN, and were generally correlated with TCDD-EQ and EROD activity. Conversely, PCB concentrations were low (<0.1 g/g) in the more agricultural parts of the MRB. Concentrations of inorganic contaminants were also relatively low and stable or declining relative to past levels at most sites. Exceptions were Hg and Se; Hg concentrations were slightly elevated (>0.3 g/g) in bass from the Mississippi River at Memphis and several other sites and in carp from one MSE site. Concentrations of Se were also great enough to constitute a hazard to piscivorous wildlife (>0.6 g/g) at several MRB sites in the western parts of the MRB and were especially high (4-5 g/g) in fish from John Martin Reservoir, CO, where elevated concentrations were reported previously. Biomarker results indicated that fish from many stations had been exposed to contaminants, but at no sites did findings indicate exposure to high concentrations of toxic chemicals. Noteworthy among biomarker findings was that 73% of the male smallmouth bass (Micropterus dolomieui) from the Mississippi River at Lake City, MN (Lake Pepin) were intersex as indicated by the histological detection of ovotestes; and the combined EROD and H4IIE results indicated that fish from several rural sites in the

Mississippi River basin↗

USGS2007

Occurrence of radium-224, radium-226 and radium-228 in water from the Vincentown and Wenonah-Mount Laurel aquifers, the Englishtown aquifer system, and the Hornerstown and Red Bank Sands, southwestern and south-central New Jersey

This investigation is the first regionally focused study of the presence of natural radioactivity in water from the Vincentown and Wenonah-Mount Laurel aquifers, Englishtown aquifer system, and the Hornerstown and Red Bank Sands. Geologic materials composing the Vincentown and Wenonah-Mount Laurel aquifers and the Hornerstown and Red Bank Sands previously have been reported to contain radioactive (uranium-enriched) phosphatic strata, which is common in deposits from some moderate-depth coastal marine environments. The decay of uranium and thorium gives rise to natural radioactivity and numerous radioactive progeny, including isotopes of radium. Naturally occurring radioactive isotopes, especially those of radium, are of concern because radium is a known human carcinogen and ingestion (especially in water used for drinking) can present appreciable health risks. A regional network in southwestern and south-central New Jersey of 39 wells completed in the Vincentown and Wenonah-Mount Laurel aquifers, the Englishtown aquifer system, and the Hornerstown and Red Bank Sands was sampled for determination of gross alpha-particle activity; concentrations of radium radionuclides, major ions, and selected trace elements; and physical properties. Concentrations of radium-224, radium-226, and radium-228 were determined for water from 28 of the 39 wells, whereas gross alpha-particle activity was determined for all 39. The alpha spectroscopic technique was used to determine concentrations of radium-224, which ranged from less than 0.5 to 2.7 pCi/L with a median concentration of less than 0.5pCi/L, and of radium-226, which ranged from less than 0.5 to 3.2 pCi/L with a median concentration of less than 0.5 pCi/L. The beta-counting technique was used to determine concentrations of radium-228. The concentration of radium-228 ranged from less than 0.5 to 4.3 pCi/L with a median of less than 0.5. Radium-228, when quantifiable, had the greatest concentration of the three radium radioisotopes in 9 of the 12 samples (75 percent). The concentration of radium-224 exceeded that of radium-226 in five of the six (83 percent) samples when both were quantifiable. The radium concentration distribution differed by aquifer, with the highest Ra-228 concentrations present in the Englishtown aquifer system and the highest Ra-226 concentrations present in the Wenonah-Mount Laurel aquifer. Radium-224 generally contributed a considerable amount of gross alpha-particle activity to water produced from all the sampled aquifers, but was not the dominant radionuclide as it is in water from the Kirkwood-Cohansey aquifer system, nor were concentrations greater than 1 pCi/L of radium-224 widespread. Gross alpha-particle activity was found to exceed the U.S Environmental Protection Agency (USEPA) Maximum Contaminant Level (MCL) of 15 pCi/L in one sample (16 pCi/L) from the Vincentown aquifer. A greater part of the gross alpha-particle activity in water from the Wenonah-Mount Laurel aquifer resulted from the decay of Ra-226 than did the gross alpha-particle activity in the other sampled aquifers; this relation is consistent with the concentration distribution of the Ra-226 itself. Concentrations of radium-224 correlate strongly with those of both radium-226 and radium-228 (Spearman correlation coefficients, r, +0.86 and +0.66, respectively). The greatest concentrations of radium-224, radium-226, and radium-228 were present in the most acidic ground water. All radium-224, radium-226, and radium-228 concentrations greater than 2.5 pCi/L were present in ground-water samples with a pH less than 5.0. The presence of combined radium-226 and radium-228 concentrations greater than 5 pCi/L in samples from the Vincentown and Wenonah-Mount Laurel aquifers and the Englishtown aquifer system was not nearly as common as in samples from the Kirkwood-Cohansey aquifer system, likely because of the slightly higher pH of water from these aquifers relative to that of Kirkwood-Cohansey aqu

New Jersey↗

USGS2011

Concentrations, loads, and sources of polychlorinated biphenyls, Neponset River and Neponset River Estuary, eastern Massachusetts

Polychlorinated biphenyls (PCBs) are known to contaminate the Neponset River, which flows through parts of Boston, Massachusetts, and empties into the Neponset River Estuary, an important fish-spawning area. The river is dammed and impassable to fish. The U.S. Geological Survey, in cooperation with the Massachusetts Department of Fish and Game, Division of Ecological Restoration, Riverways Program, collected, analyzed, and interpreted PCB data from bottom-sediment, water, and (or) fish-tissue samples in 2002, 2004-2006. Samples from the Neponset River and Neponset River Estuary were analyzed for 209 PCB congeners, PCB homologs, and Aroclors. In order to better assess the overall health quality of river-bottom sediments, sediment samples were also tested for concentrations of 31 elements. PCB concentrations measured in the top layers of bottom sediment ranged from 28 nanograms per gram (ng/g) just upstream of the Mother Brook confluence to 24,900 ng/g measured in Mother Brook. Concentrations of elements in bottom sediment were generally higher than background concentrations and higher than levels considered toxic to benthic organisms according to freshwater sediment-quality guidelines defined by the U.S. Environmental Protection Agency. Concentrations of dissolved PCBs in water samples collected from the Neponset River (May 13, 2005 to April 28, 2006) averaged about 9.2 nanograms per liter (ng/L) (annual average of monthly values); however, during the months of August (about 16.5 ng/L) and September (about 15.6 ng/L), dissolved PCB concentrations were greater than 14 ng/L, the U.S. Environmental Protection Agency's freshwater continuous chronic criterion for aquatic organisms. Concentrations of PCBs in white sucker (fillets and whole fish) were all greater than 2,000 ng/g wet wt, the U.S. Environmental Protection Agency's guideline for safe consumption of fish: PCB concentrations measured in fish-tissue samples collected from the Tileston and Hollingsworth and Walter Baker Impoundments were 3,490 and 2,450 ng/g wet wt (filleted) and 6,890 and 4,080 ng/g wet wt (whole fish). Total PCB-congener concentrations measured in the whole bodies of estuarine bait fish (common mummichog) averaged 708 ng/g wet wt. PCBs that pass from the Neponset River to the Neponset River Estuary are either dissolved or associated with particulate matter (including living and nonliving material) suspended in the water column. A small proportion of PCBs may also be transported as part of the body burden of fish and wildlife. During the period May 13, 2005 to April 28, 2006, about 5,100 g (3.8 L or 1 gal) of PCBs were transported from the Neponset River to the Neponset River Estuary. Generally, about one-half of these PCBs were dissolved in the water column and the other half were associated with particulate matter; however, the proportion that was either dissolved or particulate varied seasonally. Most PCBs transported from the river to the estuary are composed of four or fewer chlorine atoms per biphenyl molecule. The data suggest that widespread PCB contamination of the lower Neponset River originated from Mother Brook, a Neponset River tributary, starting sometime around the early 1950s or earlier. In 1955, catastrophic dam failure caused by flooding likely released PCB-contaminated sediment downstream and into the Neponset River Estuary. PCBs from this source area likely continued to be released after the flood and during subsequent rebuilding of downstream dams. Today (2007), PCBs are mostly trapped behind these dams; however, some PCBs either diffuse or are entrained back into the water column and are transported downstream by river water into the estuary or volatilize into the atmosphere. In addition to the continuing release of PCBs from historically contaminated bottom sediment, PCBs are still (2007) originating from source areas along Mother and Meadow Brook as well as other sources along the river and Boston Harbor. PCBs from the river (transported by river water) and from the harbor (transported by tidal action) appear to have contaminated parts of the Neponset River Estuary.

Massachusetts↗

USGS1997

Field screening of water quality, bottom sediment, and biota associated with irrigation drainage in the Yuma Valley, Arizona, 1995

Because of concerns expressed by the U.S. Congress and the environmental community, the Department of the Interior began a program in late 1985 to identify the nature and extent of water-quality problems induced by irrigation that might exist in the western States. Surface water, bottom sediment, and biota were collected from March through September 1995 along the lower Colorado River and in agricultural drains at nine sites in the Yuma Valley, Arizona, and analyzed for selected inorganic and organic constituents. Analyses of water, bottom sediment, and biota were completed to determine if irrigation return flow has caused, or has the potential to cause, harmful effects on human health, fish, and wildlife in the study area. Concentrations of dissolved solids in surface-water samples collected in March generally did not vary substantially from surface-water samples collected in June. Concentrations of dissolved solids ranged from 712 to 3,000 milligrams per liter and exceeded the U.S. Environmental Protection Agency secondary maximum contaminant level of 500 milligrams per liter for drinking water. Concentrations of chloride in 9 of 18 water samples and concentrations of sulfate in 16 of 18 water samples exceeded the U.S. Environmental Protection Agency secondary maximum contaminant level of 250 milligrams per liter for drinking water. Calcium and sodium were the dominant cations, and chloride and sulfate were the dominant anions. The maximum selenium concentration of 8 micrograms per liter exceeded the U.S. Environmental Protection Agency aquatic-life chronic criterion of 5 micrograms per liter. Concentrations of lead in 7 of 18 water samples and concentrations of mercury in 4 of 18 water samples exceeded the aquatic-life cronic criteria of 3.2 and 0.012 micrograms per liter, respectively. Concentrations of antimony, beryllium, cadmium, and silver in the water samples were below analytical reporting limits. Arsenic was detected in 3 of 9 bottom-sediment samples, and concentrations ranged from 11 to 16 micrograms per gram. Concentrations ofaluminum, beryllium, boron, copper, lead, and zinc were highest in samples from Main Drain at southerly international boundary near San Luis, Arizona. Selenium was detected in all bottom-sediment samples, and concentrations ranged from 0.1 to 0.7 micrograms per gram. Concentrations of cadmium, europium, homium, mercury, molybdenum, silver, tantalum, tin, and uranium were below analytical reporting limits in the bottom-sediment samples. Concentrations of trace elements in bottom-sediment samples were within the ranges found in a study of soils of the western United States and did not indicate a significant accumulation of these constituents. p,p'Dichlorodiphenyldichloroethylene (commonly referred to as p,-p'-DDE) was detected in one bottom-sediment sample at a concentration of 1.4 micrograms per gram. No other organochlorine compounds were detected in the bottom-sediment samples. DDE was present in all fish and bird samples. Almost one-half of the fish samples contained DDE residues that were two times higher than the mean calculated for a national study in 1984-85. Twenty-tree percent of the fish contained more than three times the national mean. Fish from downstream parts of the Main Drain had the highest concentrations of DDE. Although concentrations of DDE in fish and in bird carcasses and eggs were above background levels, residues generally were below thresholds associated with chronic poisoning and reproductive problems in figh and wildlife. Concentrations of 18 trace elements were detected in cattail (Typha sp.) roots, freshwater clam (Corbicula fluminea), fish, and bird samples. Selenium in most fish and in livers of red-winged (Agelaius phoeniceus) and yellow-headed (Xanthocephalus xanthocephalus) blackbirds was above background concentrations but below toxic concentrations. In contrast, selenium was present in a killdeer (Charadrium vociferus) liver sample at potentially toxic con

Water-Resources Investigations Report↗

USGS2014

Transmission of chronic wasting disease in Wisconsin white-tailed deer: Implications for disease spread and management

Few studies have evaluated the rate of infection or mode of transmission for wildlife diseases, and the implications of alternative management strategies. We used hunter harvest data from 2002 to 2013 to investigate chronic wasting disease (CWD) infection rate and transmission modes, and address how alternative management approaches affect disease dynamics in a Wisconsin white-tailed deer population. Uncertainty regarding demographic impacts of CWD on cervid populations, human and domestic animal health concerns, and potential economic consequences underscore the need for strategies to control CWD distribution and prevalence. Using maximum-likelihood methods to evaluate alternative multi-state deterministic models of CWD transmission, harvest data strongly supports a frequency-dependent transmission structure with sex-specific infection rates that are two times higher in males than females. As transmissible spongiform encephalopathies are an important and difficult-to-study class of diseases with major economic and ecological implications, our work supports the hypothesis of frequency-dependent transmission in wild deer at a broad spatial scale and indicates that effective harvest management can be implemented to control CWD prevalence. Specifically, we show that harvest focused on the greater-affected sex (males) can result in stable population dynamics and control of CWD within the next 50 years, given the constraints of the model. We also provide a quantitative estimate of geographic disease spread in southern Wisconsin, validating qualitative assessments that CWD spreads relatively slowly. Given increased discovery and distribution of CWD throughout North America, insights from our study are valuable to management agencies and to the general public concerned about the impacts of CWD on white-tailed deer populations.

Wisconsin↗

USGS2003

Morphometric and histopathological parameters of gonadal development in adult common carp from contaminated and reference sites in Lake Mead, Nevada

This study examined the hypothesis that exposure to sublethal concentrations of contaminants alters the gonadal condition of feral common carp Cyprinus carpio . Adult common carp in Lake Mead, Nevada, were collected from a contaminated site (Las Vegas Bay) that receives municipal and industrial effluent and from a reference site (Overton Arm) with a relatively low level of contamination. Fish were sampled seven times over a 1-year period extending over two separate spawning seasons. Morphometric and histopathological parameters of gonadal and germ cell development were determined. In males, the pattern of seasonal changes in the gonadosomatic index (GSI) was similar between the sites and showed no clear association with site-specific seasonal temperature profiles. However, Las Vegas Bay males had consistently lower GSI values and, on one of the sampling dates, a lower proportion of sperm relative to other germ cell stages (determined histologically). Further, Las Vegas Bay males had a higher incidence of gonadal macrophage aggregates, which are putative tissue biomarkers of contaminant exposure in fishes. In females, seasonal GSI profiles, the frequency of fish with postovulatory follicles (an index of spawning activity), and the timing of new follicle recruitment all showed differences between sites, but these differences generally matched differences in water temperature profile. Also, the peak size-frequency of full-grown follicles did not differ between sites, and estimates of fecundity for the second spawning season indicated that females from the reference site unexpectedly produced a lower number of gametes. Overall, site differences in gonadal condition were observed in carp of both sexes but they seemed to be associated with site differences in contaminant levels only in males. The apparent lack of association between contaminant level and gonadal condition in female carp from mildly mesotrophic Lake Mead may indicate a lack of contaminant effects in females or a confounding effect of the higher nutrient loads in the Las Vegas Bay environment.

Nevada↗

USGS2009

Monitoring for Pesticides in Groundwater and Surface Water in Nevada, 2008

Commercial pesticide applicators, farmers, and homeowners apply about 1 billion pounds of pesticides annually to agricultural land, non-crop land, and urban areas throughout the United States (Gilliom and others, 2006, p. 1). The U.S. Environmental Protection Agency (USEPA) defines a pesticide as any substance used to kill or control insects, weeds, plant diseases, and other pest organisms. Although there are important benefits from the proper use of pesticides, like crop protection and prevention of human disease outbreaks, there are also risks. One risk is the contamination of groundwater and surface-water resources. Data collected during 1992-2001 from 51 major hydrologic systems across the United States indicate that one or more pesticide or pesticide breakdown product was detected in more than 50 percent of 5,057 shallow (less than 20 feet below land surface) wells and in all of the 186 stream sites that were sampled in agricultural and urban areas (Gilliom and others, 2006, p. 2-4). Pesticides can contaminate surface water and groundwater from both point sources and non-point sources. Point sources are from specific locations such as spill sites, disposal sites, pesticide drift during application, and application of pesticides to control aquatic pests. Non-point sources represent the dominant source of surface water and groundwater contamination and may include agricultural and urban runoff, erosion, leaching from application sites, and precipitation that has become contaminated by upwind applications. Pesticides typically enter surface water when rainfall or irrigation exceeds the infiltration capacity of soil and resulting runoff then transports pesticides to streams, rivers, and other surface-water bodies. Contamination of groundwater may result directly from spills near poorly sealed well heads and from pesticide applications through improperly designed or malfunctioning irrigation systems that also are used to apply pesticides (chemigation; Carpenter and Johnson, 1997). Groundwater contamination also may come indirectly by the percolation of agricultural and urban irrigation water through soil layers and into groundwater and from pesticide residue in surface water, such as drainage ditches, streams, and municipal wastewater. To protect surface water and groundwater from pesticide contamination, the USEPA requires that all states establish a pesticide management plan. The Nevada Department of Agriculture (NDOA), with assistance from the USEPA, developed a management program of education (Hefner and Donaldson, 2006), regulation (Johnson and others, 2006), and monitoring (Pennington and others, 2001) to protect Nevada's water resources from pesticide contaminants. Sampling sites are located in areas where urban or agricultural pesticide use may affect groundwater, water bodies, endangered species, and other aquatic life. Information gathered from these sites is used by NDOA to help make regulatory decisions that will protect human and environmental health by reducing and eliminating the occurrence of pesticide contamination. This fact sheet describes current (2008) pesticide monitoring of groundwater and streams by the NDOA in Nevada and supersedes Pennington and others (2001).

Fact Sheet↗

USGS2015

Groundwater quality in Geauga County, Ohio: status, including detection frequency of methane in water wells, 2009, and changes during 1978-2009

Domestic wells that are not safeguarded by regular water-quality testing provide drinking water for 79 percent of the residents of Geauga County, in northeastern Ohio. Since 1978, the U.S. Geological Survey (USGS) has worked cooperatively with the Board of Commissioners and Geauga County Planning Commission to monitor the quality of groundwater in four commonly used aquifers in county—the glacial deposits, the Pottsville Formation, the Cuyahoga Group, and the Berea Sandstone. A 33-percent growth in population from 1980 to 2009 increased the potential for humans to influence groundwater resources by withdrawing more groundwater, disposing of more human waste near the land surface, treating an expanded network of township roads with deicing salt, and likely using more solvents, pesticides, and other chemicals on the land surface than were used in preceding decades. To describe the status of groundwater quality in 2009 and its suitability for drinking, USGS personnel collected samples of water prior to treatment from 16 wells (mostly domestic) during June 9–19. The samples were analyzed for 92 properties and constituents, 41 of which had human-health benchmarks to which analytical results could be compared to evaluate suitability for drinking. Four of these benchmarks were exceeded at the following frequencies: arsenic (2 of 16 wells, 12.5 percent), total coliform bacteria (2 of 16 wells, 12.5 percent), fecal coliform bacteria (1 of 14 wells, 7 percent), and sodium (6 of 16 wells, 38 percent). No domestic wells sampled in 2009 exceeded the health-based benchmark of 300 micrograms per liter (µg/L) for manganese, although 5 of 65 wells (8 percent) sampled since 1978 have. Analyses from domestic wells were augmented with water-quality data from seven public-supply well fields that were obtained from the Ohio Environmental Protection Agency. These public-supply data were typically collected between 2000 and 2010 and represent water samples that were collected prior to treatment or that were treated by a method that does not effectively remove the constituents of interest. Similar to the domestic-well data, these data indicated that some samples from public-supply wells have also exceeded health-based benchmarks for arsenic and sodium, along with occasional exceedances of health-based benchmarks for cadmium and lead. Concentrations of nitrate, pesticides, and volatile organic compounds in ground-water samples from domestic and (or) public-supply wells were either considerably less than the human-health benchmarks for these constituents or were not detected. Water-quality data collected in 2009 were also compared to aesthetically based benchmarks developed by the U.S. Environmental Protection Agency, called Secondary Maximum Contaminant Levels (SMCLs). Iron and manganese most frequently exceeded SMCLs (in samples from 10 of 16 domestic wells and in untreated water from 3 of 4 public-supply well fields). To evaluate the frequency of methane detection in water wells in the county, the USGS sampled 16 wells across the county and screened the samples for combustible gas within the headspace (the air above the water in a closed container). Water from three (19 percent) of the wells contained detectable combustible gas (0.10 to 0.40 percent by volume). All three detections were from wells tapping the Cuyahoga Group or the Berea Sandstone, and all detections were less than the lower explosive limit of 5 percent by volume—the concentration at which methane in air can be flammable if an ignition source is present. Analyses of dissolved gas composition in water from these three wells showed methane concentrations ranging from 0.007 to 1.8 milligrams per liter (mg/L). The primary effect of human activities on groundwater quality found during this study is the input of salinity, or chloride, near land surface. On the basis of ratios of chloride to bromide, the main sources of chloride are road salt and septic leachate rather than oil-field brines (either spilled at land surface or sprayed on roads for dust control). The correlation of chloride concentration to distance of well from road for 31 wells in the county sampled by the U.S. Geological Survey in 1999 suggests that road salt is the dominant source of chloride. The majority of constituents exceeding health-based and aesthetically based benchmarks in groundwater were those that are naturally present in aquifer rocks and sediments rather than constituents introduced by human activities. Concentrations of such natural contaminants are controlled by geochemical processes in the subsurface, particularly by oxidation-reduction (redox) reactions. The categorization of redox conditions based on the water quality of 116 samples collected from 65 wells in Geauga County during 1978 through 2009 indicates that most groundwater samples were strongly reducing (60 percent) or oxic (18 percent). Oxic waters were found only in the Pottsville Formation and Berea Sandstone and were generally associated with nitrate at concentrations of 0.38 to 6.0 mg/L. Strongly reducing waters occurred in all four commonly used aquifers and were associated with the following naturally occurring contaminants: (1) arsenic and manganese at concentrations exceeding the health-based benchmarks (10 µg/L and 300 µg/L, respectively) in some samples, (2) iron and manganese at concentrations exceeding the aesthetically based standards (300 µg/L and 50 µg/L, respectively) in most samples, and (3) total sulfides (consisting of hydrogen sulfide gas with its characteristic rotten-egg odor and [or] iron sulfide minerals that appear as finely disseminated particulates in water). Because of the association of redox conditions with specific contaminants, attempts were made to further document spatially where oxic and strongly reducing conditions occur so that contaminant occurrence can be better anticipated by planners and well owners. Within the Pottsville Formation, wells tapping strongly reducing groundwater tended to have a greater thickness of overlying low-permeability (recharge-inhibiting) material such as clay and shale than other wells tapping oxic or nitrate-reducing groundwater. In the Berea Sandstone, oxic conditions were found at well locations where either depth to groundwater was shallow (less than 45 feet [ft] below land surface) or the measured water level was within the open interval (uncased portion) of the well, whereas strongly reducing groundwater was found at well locations where depths to water were greater than 60 ft below land surface and measured water levels were 15 ft or more above the open interval of the well. To evaluate whether constituent concentrations consistently increased or decreased over time, the strength of the association between sampling year (time) and constituent concentration was statistically evaluated for 116 water-quality samples collected by the USGS in 1978, 1980, 1986, 1999, and 2009 from a total of 65 wells across the county (generally domestic wells or wells serving small businesses or churches). Results indicate that many of the constituents that have been analyzed for decades exhibited no consistent temporal trends at a statistically significant level (p-value less than 0.05); fluctuations in concentrations of these constituents represent natural variation in groundwater quality. Dissolved oxygen, calcium, and sulfate concentrations and chloride:bromide ratios increased over time in one or more aquifers, while pH and concentrations of bromide and dissolved organic carbon decreased over time. Detections of total coliform bacteria and nitrate did not become more frequent from 1986 to 2009, even though potential sources of these constituents, such as number of septic systems (linked to population) and percent developed land in the county, increased during this period.

Geauga County↗

USGS2012

Maps of estimated nitrate and arsenic concentrations in basin-fill aquifers of the southwestern United States

Human-health concerns and economic considerations associated with meeting drinking-water standards motivated a study of the vulnerability of basin-fill aquifers to nitrate contamination and arsenic enrichment in the southwestern United States. Statistical models were developed by using the random forest classifier algorithm to predict concentrations of nitrate and arsenic across a model grid representing about 190,600 square miles of basin-fill aquifers in parts of Arizona, California, Colorado, Nevada, New Mexico, and Utah. The statistical models, referred to as classifiers, reflect natural and human-related factors that affect aquifer vulnerability to contamination and relate nitrate and arsenic concentrations to explanatory variables representing local- and basin-scale measures of source and aquifer susceptibility conditions. Geochemical variables were not used in concentration predictions because they were not available for the entire study area. The models were calibrated to assess model accuracy on the basis of measured values. Only 2 percent of the area underlain by basin-fill aquifers in the study area was predicted to equal or exceed the U.S. Environmental Protection Agency drinking-water standard for nitrate as N (10 milligrams per liter), whereas 43 percent of the area was predicted to equal or exceed the standard for arsenic (10 micrograms per liter). Areas predicted to equal or exceed the drinking-water standard for nitrate include basins in central Arizona near Phoenix; the San Joaquin Valley, the Santa Ana Inland, and San Jacinto Basins of California; and the San Luis Valley of Colorado. Much of the area predicted to equal or exceed the drinking-water standard for arsenic is within a belt of basins along the western portion of the Basin and Range Physiographic Province that includes almost all of Nevada and parts of California and Arizona. Predicted nitrate and arsenic concentrations are substantially lower than the drinking-water standards in much of the study area-about 93 percent of the area underlain by basin-fill aquifers was less than one-half the standard for nitrate as N (5.0 milligrams per liter), and 50 percent was less than one-half the standard for arsenic (5.0 micrograms per liter). The predicted concentrations and the improved understanding of the susceptibility and vulnerability of southwestern basin-fill aquifers to nitrate contamination and arsenic enrichment can be used by water managers as a qualitative tool to assess and protect the quality of groundwater resources in the Southwest.

Arizona, California, Colorado, Idaho, Nevada, New ↗

USGS2018

Alaska

Alaska is the largest state in the Nation, almost one-fifth the size of the combined lower 48 United States, and is rich in natural capital resources. Alaska is often identified as being on the front lines of climate change since it is warming faster than any other state and faces a myriad of issues associated with a changing climate. The cost of infrastructure damage from a warming climate is projected to be very large, potentially ranging from $110 to $270 million per year, assuming timely repair and maintenance. Although climate change does and will continue to dramatically transform the climate and environment of the Arctic, proactive adaptation in Alaska has the potential to reduce costs associated with these impacts. This includes the dissemination of several tools, such as guidebooks to support adaptation planning, some of which focus on Indigenous communities. While many opportunities exist with a changing climate, economic prospects are not well captured in the literature at this time. As the climate continues to warm, there is likely to be a nearly sea ice-free Arctic during the summer by mid-century. Ocean acidification is an emerging global problem that will intensify with continued carbon dioxide (CO 2 ) emissions and negatively affects organisms. Climate change will likely affect management actions and economic drivers, including fisheries, in complex ways. The use of multiple alternative models to appropriately characterize uncertainty in future fisheries biomass trajectories and harvests could help manage these challenges. As temperature and precipitation increase across the Alaska landscape, physical and biological changes are also occurring throughout Alaska’s terrestrial ecosystems. Degradation of permafrost is expected to continue, with associated impacts to infrastructure, river and stream discharge, water quality, and fish and wildlife habitat. Longer sea ice-free seasons, higher ground temperatures, and relative sea level rise are expected to exacerbate flooding and accelerate erosion in many regions, leading to the loss of terrestrial habitat in the future and in some cases requiring entire communities or portions of communities to relocate to safer terrain. The influence of climate change on human health in Alaska can be traced to three sources: direct exposures, indirect effects, and social or psychological disruption. Each of these will have different manifestations for Alaskans when compared to residents elsewhere in the United States. Climate change exerts indirect effects on human health in Alaska through changes to water, air, and soil and through ecosystem changes affecting disease ecology and food security, especially in rural communities. Alaska’s rural communities are predominantly inhabited by Indigenous peoples who may be disproportionately vulnerable to socioeconomic and environmental change; however, they also have rich cultural traditions of resilience and adaptation. The impacts of climate change will likely affect all aspects of Alaska Native societies, from nutrition, infrastructure, economics, and health consequences to language, education, and the communities themselves. The profound and diverse climate-driven changes in Alaska’s physical environment and ecosystems generate economic impacts through their effects on environmental services. These services include positive benefits directly from ecosystems (for example, food, water, and other resources), as well as services provided directly from the physical environment (for example, temperature moderation, stable ground for supporting infrastructure, and smooth surface for overland transportation). Some of these effects are relatively assured and in some cases are already occurring. Other impacts are highly uncertain, due to their dependence on the structure of global and regional economies and future human alterations to the environment decades into the future, but they could be large. In Alaska, a range of adaptations to changing climate and related environmental conditions are underway and others have been proposed as potential actions, including measures to reduce vulnerability and risk, as well as more systemic institutional transformation.

Report↗

USGS2011

A natural experiment on the condition-dependence of achromatic plumage reflectance in black-capped chickadees

Honest advertisement models posit that only individuals in good health can produce and/or maintain ornamental traits. Even though disease has profound effects on condition, few studies have experimentally tested its effects on trait expression and even fewer have identified a mechanistic basis for these effects. Recent evidence suggests that black and white, but not grey, plumage colors of black-capped chickadees (Poecile atricapillus) are sexually selected. We therefore hypothesized that birds afflicted with avian keratin disorder, a condition that affects the beak and other keratinized tissues, would show reduced expression of black and white, but not grey, color. UV-vis spectrometry of black-capped chickadees affected and unaffected by avian keratin disorder revealed spectral differences between them consistent with this hypothesis. To elucidate the mechanistic bases of these differences, we used scanning electron microscopy (SEM), electron-dispersive x-ray spectroscopy (EDX) and a feather cleaning experiment. SEM showed extreme feather soiling in affected birds, and EDX revealed that this was most likely from external sources. Experimentally cleaning the feathers increased color expression of ornamental feathers of affected, but not unaffected, birds. These data provide strong evidence that black and white color is an honest indicator in chickadees, and that variation in feather dirtiness, likely due to differences in preening behavior is a mechanism for this association.

PLoS ONE↗

USGS2009

Pesticides in ground water in selected agricultural land-use areas and hydrogeologic settings in Pennsylvania, 2003-07

This report was prepared by the U.S. Geological Survey (USGS) in cooperation with the Pennsylvania Department of Agriculture (PDA) as part of the Pennsylvania Pesticides and Ground Water Strategy (PPGWS). Monitoring data and extensive quality-assurance data on the occurrence of pesticides in ground water during 2003–07 are presented and evaluated; decreases in the land area used for agriculture and corresponding changes in the use of pesticides also are documented. In the Pennsylvania ground waters assessed since 2003, concentrations of pesticides did not exceed any maximum contaminant or health advisory levels established by the U.S. Environmental Protection Agency; PPGWS actions are invoked by the PDA at fractions of these levels and were needed only in areas designated by the PDA for special ground-water protection. Previous investigations through 1998 of pesticides in Pennsylvania ground water identified land use, as a surrogate for pesticide use, and rock type of the aquifer combined with physiography as key hydrogeologic setting variables for understanding aquifer vulnerability to contamination and the common occurrence of atrazine and metolachlor in ground water. Of 20 major hydrogeologic settings in a framework established in 1999 for pesticide monitoring in Pennsylvania, 9 were identified as priorities for data collection in order to change the monitoring status from "inadequate" to "adequate" for the PPGWS. Agricultural and forested land-use areas are decreasing because of urban and suburban growth. In the nine hydrogeologic settings evaluated using 1992 and 2001 data, decreases of up to 12 percent for agricultural land and 10 percent for forested land corresponded to increases of up to 11 percent for urban land. Changes in agricultural pesticide use were computed from crop data. For example, from 1996 to 2004–05, atrazine use declined by about 15 percent to 1,314,000 lb/yr (pounds per year) and metolachlor use increased by about 20 percent to 895,000 lb/yr; these compounds are the two most-used agricultural pesticides statewide. In 2003–07, a baseline assessment of pesticides was conducted in five of nine hydrogeologic settings with inadequate monitoring data—the Blue Ridge crystalline and Triassic Lowland siliciclastic, Eastern Lake surficial, Devonian-Silurian carbonate, Great Valley siliciclastic, and Northeastern Glaciated surficial settings. Between 20 and 30 wells in each setting were monitored. Of the 126 wells sampled, 96 well-water samples were analyzed for at least 52 pesticide compounds at the USGS National Water Quality Laboratory (NWQL) using a method with a minimum reporting level (MRL) at or above 0.002 µg/L (micrograms per liter). Of the 96 well waters analyzed by NWQL, 43 had measureable concentrations of one or more pesticides. Atrazine and (or) deethylatrazine (CIAT), a degradation product of atrazine, were reported at or above the MRL in 39 of the 43 well waters. Neither atrazine nor CIAT were reported at concentrations exceeding 0.10 µg/L; all measured concentrations in these five settings were below PPGWS action levels. Metolachlor was present in 7 of the 43 well waters with measureable concentrations of 1 or more pesticides; however, concentrations were below the MRL. The other 30 samples (10 of 20 wells in the Blue Ridge crystalline and Triassic Lowland siliciclastic setting and all 20 wells in the Eastern Lake surficial setting) were analyzed for at least 19 pesticide compounds at the Pennsylvania Department of Environmental Protection Laboratory (PADEPL); the PADEPL reported no concentrations of pesticides at or above an MRL of 0.10 µg/L. Statistical tests using the NWQL analytical results showed correlations between pesticide occurrence and two indicators of water-quality degradation—the occurrence of total coliform bacteria and nitrate concentration. A 2 × 2 contingency-table test indicated a relation between presence or absence of atrazine or metolachlor and presence or absence of bacteria only for the 10 wells representing the Blue Ridge crystalline and Triassic Lowland siliciclastic setting. Results of Spearman’s rank test showed strong positive correlations in the Devonian-Silurian carbonate setting between 1) the number of pesticides above the MRLs and nitrate concentration, and 2) concentrations of atrazine and nitrate. Atrazine concentration and nitrate concentration also showed a statistically significant positive correlation in the Great Valley siliciclastic setting. An additional component of baseline monitoring was to evaluate changes in pesticide concentration in water from wells representing hydrogeologic settings most vulnerable to contamination from pesticides. In 2003, 16 wells originally sampled in the 1990s were resampled—4 each in the Appalachian Mountain carbonate, Triassic Lowland siliciclastic, Great Valley carbonate, and Piedmont carbonate settings. Nine of these wells, where pesticide concentrations from 1993 and 2003 were analyzed at the NWQL, were chosen for a paired-sample analysis using concentrations of atrazine and metolachlor. A statistically significant decrease in atrazine concentration was identified using the Wilcoxon signed-rank test (p = 0.004); significant temporal changes in metolachlor concentrations were not observed (p = 0.625). Monitoring in three areas of special ground-water protection, where selected pesticide concentrations in well water were at or above the PPGWS action levels, was done at wells BE 1370 (Berks County, Oley Township), BA 437 (Blair County, North Woodbury Township), and LN 1842 (Lancaster County, Earl Township). Co-occurrence of pesticide-degradation products with parent compounds was documented for the first time in ground-water samples collected from these three wells. Degradation products of atrazine, cyanazine, acetochlor, alachlor, and metolachlor were commonly at larger concentrations than the parent compound in the same water sample. Pesticide occurrence in water from wells neighboring the hot-spot wells was highly variable; however, the same sets of pesticide compounds that were present in wells BA 437, BE 1370, and LN 1842 were present to some degree in water from neighboring wells. To evaluate temporal changes in concentration, nonparametric statistical tests were used to determine overall and seasonal monotonic trends. Concentrations of alachlor, atrazine, metolachlor, and nitrate were examined using the 5-year (2003–07) and the long-term data from wells BA 437 and LN 1842 (1996–2007 and 1995–2007, respectively), and the long-term data for well BE 1370 (1998–2007); results showed either downward trends or no trends. Trends in acetochlor concentrations were tested only at well LN 1842 using the 5-year data; no trends were observed. Homogeneity of trend tests indicated statistically significant downward concentration trends in the long-term data were due to seasonal trends as follows: BA 437—alachlor and atrazine (summer); BE 1370—atrazine and metolachlor (winter) and alachlor (winter and spring); LN 1842—alachlor (summer and fall) and atrazine (spring and fall).

Pennsylvania↗

USGS2006

Strength in Numbers: Describing the Flooded Area of Isolated Wetlands

Thousands of isolated, freshwater wetlands are scattered across the karst1 landscape of central Florida. Most are small (less than 15 acres), shallow, marsh and cypress wetlands that flood and dry seasonally. Wetland health is threatened when wetland flooding patterns are altered either by human activities, such as land-use change and ground-water pumping, or by changes in climate. Yet the small sizes and vast numbers of isolated wetlands in Florida challenge our efforts to characterize them collectively as a statewide water resource. In the northern Tampa Bay area of west-central Florida alone, water levels are measured monthly in more than 400 wetlands by the Southwest Florida Water Management Distirct (SWFWMD). Many wetlands have over a decade of measurements. The usefulness of long-term monitoring of wetland water levels would greatly increase if it described not just the depth of water at a point in the wetland, but also the amount of the total wetland area that was flooded. Water levels can be used to estimate the flooded area of a wetland if the elevation contours of the wetland bottom are determined by bathymetric mapping. Despite the recognized importance of the flooded area to wetland vegetation, bathymetric maps are not available to describe the flooded areas of even a representative number of Florida's isolated wetlands. Information on the bathymetry of isolated wetlands is rare because it is labor intensive to collect the land-surface elevation data needed to create the maps. Five marshes and five cypress wetlands were studied by the U.S. Geological Survey (USGS) during 2000 to 2004 as part of a large interdisciplinary study of isolated wetlands in central Florida. The wetlands are located either in municipal well fields or on publicly owned lands (fig. 1). The 10 wetlands share similar geology and climate, but differ in their ground-water settings. All have historical water-level data and multiple vegetation surveys. A comprehensive report by Haag and others (2005) documents bathymetric mapping approaches, the frequency of flooding in different areas of the wetlands, and the relation between flooding and vegetation in these wetlands. This fact sheet describes bathymetric mapping approaches and partial results from two natural marshes (Hillsborough River State Park Marsh, and Green Swamp Marsh) and one impaired marsh (W-29 Marsh) that is located on a municipal well field and is affected by ground-water withdrawals. (fig. 1).

Fact Sheet↗

USGS2013

Assaying environmental nickel toxicity using model nematodes

Although nickel exposure results in allergic reactions, respiratory conditions, and cancer in humans and rodents, the ramifications of excess nickel in the environment for animal and human health remain largely undescribed. Nickel and other cationic metals travel through waterways and bind to soils and sediments. To evaluate the potential toxic effects of nickel at environmental contaminant levels (8.9-7,600 µg Ni/g dry weight of sediment and 50-800 µg NiCl 2 /L of water), we conducted assays using two cosmopolitan nematodes, Caenorhabditis elegans and Pristionchus pacificus . We assayed the effects of both sediment-bound and aqueous nickel upon animal growth, developmental survival, lifespan, and fecundity. Uncontaminated sediments were collected from sites in the Midwestern United States and spiked with a range of nickel concentrations. We found that nickel-spiked sediment substantially impairs both survival from larval to adult stages and adult longevity in a concentration-dependent manner. Further, while aqueous nickel showed no adverse effects on either survivorship or longevity, we observed a significant decrease in fecundity, indicating that aqueous nickel could have a negative impact on nematode physiology. Intriguingly, C. elegans and P. pacificus exhibit similar, but not identical, responses to nickel exposure. Moreover, P. pacificus could be tested successfully in sediments inhospitable to C. elegans . Our results add to a growing body of literature documenting the impact of nickel on animal physiology, and suggest that environmental toxicological studies could gain an advantage by widening their repertoire of nematode species.

PLoS ONE↗

USGS1988

Effects of zinc smelter emissions on farms and gardens at Palmerton, PA

In 1979, before the primary Zn smelter at Palmerton was closed due to excessive Zn and Cd emissions and change in the price of Zn, we were contacted by a local veterinarian regarding death of foals (young horses) on farms near the smelter. To examine whether Zn or Cd contamination of forage or soils could be providing potentially toxic levels of Zn or other elements in the diets of foals, we measured metals in forages, soils, and feces of grazing livestock on two farms near Palmerton. The farms were about 2.5 and about 10 km northeast of the East stack. Soils, forages, and feces were greatly increased in Zn and Cd. Soil, forage, and fecal Zn were near 1000 mg/kg and Cd, 10-20 mg/kg at farm A (2.5 km) compared to normal background levels of 43 mg Zn and 0.2 mg Cd/kg, respectively. Liver and kidney of cattle raised on Farm A were increased in Zn and Cd, indicating that at least part of the Zn and Cd in smelter contaminated forages was bioavailable. During the farm sampling, we obtained soil from one garden in Palmerton within 200 m of the primary (West) smelter. The Borough surrounds the smelter facility in a valley. Because soil Cd was near 100 mg/kg, we sampled garden soils and vegetables from over 40 gardens in 6 randomly selected blocks and in rural areas at different distances from the smelter during September, 1980. All homes were contacted on each sampled block. Nearly all homes had some garden, while at least 2 appeared to grow over 50% of their annual vegetable and potato consumption. Palmerton garden soils averaged 76 mg Cd/kg and 5830 mg Zn/kg. Gardeners had been taught to add limestone and organic fertilizers to counteract yield reduction and chlorosis due to the excessive soil Zn. Gardens with over 5000 mg Zn/kg were nearly allover pH 7, and many were calcareous. Because the smelter had not yet ceased operations in 1980, crops could have been polluted by aerosol Zn and Cd emitted by the smelter. Crop Zn and Cd were extremely high, about 100 times normal Cd levels. In more distant gardens, soil metals were not so high, and gardeners had not added as much limestone. Bean rotated with the potatoes and leafy vegetables often suffered chlorosis and visible yield reduction. Potatoes contained up to 6 mg Cd/kg dry wt. compared to backgrournd 0.20 mg/kg DW. An estimate of potential Zn and Cd intakes due to the contaminated crops was made using the teen-aged male diet model, and average Cd intakes would be 250 ug/day if diets contained 100% locally grown leafy and root vegetables and potatoes. Gardeners were warned to restrict consumption of garden grown leafy and root vegetables and potatoes, and to apply 22 T/A of limestone to restrict Cd uptake. Use of improved adult diet models, and increased understanding of the effect of Zn on Cd bioavailability indicate that little Cd risk may result from consuming garden vegetables grown at Palmerton. Individuals appear to be protected because Zn accompanied crop Cd, they grew only small amounts of vegetables in most cases, and aerosol pollution of crops has ceased. Reduced Zn emissions, and Cu supplementation have prevented further health effects on foals or cattle. Detailed examination of these risks is needed to develop remedial measures for both farms and gardens in the Zn + Cd polluted soils near Zn smelters at many locations in the United States and other countries. Remedial actions are necessarary to prevent chronic Zn toxicity to crops and livestock, and minimize the risk of chronic Cd toxicity to humans who consume locally grown garden crops.

Pennsylvania↗