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Using a novel micro-sampling technique to monitor the effects of methylmercury on the eggs of wild birds

Methylmercury is the predominant chemical form of mercury reported in the eggs of wild birds. The embryo is the life stage at which birds are most sensitive to methylmercury. Protective guidelines have been based largely on captive-breeding studies done with chickens (Gallus domesticus), mallards (Anas platyrhynchos), and ring-necked pheasants (Phasianus colchicus). Typically these studies are cost and time prohibitive. In the past, researchers have used either egg injections or the ?sample egg? technique to determine contaminant effects on bird eggs. Both techniques have their limitations. As an alternative to the above methods and because most of the methylmercury is found in the albumen we have developed a novel, less invasive technique, to micro-sample the albumen of eggs in the field. An albumen sample would be analyzed and then compared to the hatching success of that egg. Using the micro-sampling procedure, the egg is oriented with the blunt end up and the pointed end down. A vent hole is drilled at the top to relieve pressure. Approximately one third up from the bottom, a withdrawal site is drilled just until the inner shell membrane is exposed. A syringe with a 21 or 18 gauge needle is gently inserted just into the egg and approximately 200?300?l of albumen is removed. Almost concurrently this site and then the vent are sealed. Thus far we have experimented with both chicken and mallard eggs in the laboratory. We sampled chicken eggs at days 0 and 3 of incubation with a hatching success of 76% and 70%, respectively. Neither group was significantly different from control eggs (P=0.52, 0.54). Field studies are in progress using this technique in which birds are allowed to incubate their own eggs. We envision micro-sampling to be a tool that researchers and managers could use in the field to determine the effects of mercury or other contaminants in bird populations. Micro-sampling would reduce the impact on the sampled population and could be used to monitor sensitive species without impacting reproduction and recruitment.

Proceedings of the Annual Conference of the Southe

Progress toward a National Water Census

Increasing demand and competition for limited regional water resources make it difficult to ensure adequate water availability for both human and ecological needs now and into the future. Recognizing the need to improve the tools and information that are available to effectively evaluate water-resource availability, the U.S. Geological Survey (USGS) identified a National Water Census (NWC) as one of its six core science directions for the decade 2007–17. In 2009, the SECURE Water Act (Public Law 111–11) authorized the USGS to develop a national water availability and use assessment program that would update the most recent national assessment of the status of water resources in the United States as well as develop the science to improve forecasts of water availability and quality for future needs. By evaluating large-scale effects of changes in land use and land cover, water use, and climate on occurrence and distribution of water, water quality, and human and aquatic-ecosystem health, the NWC will also help to inform a broader initiative by the Department of the Interior, WaterSMART (Sustain and Manage America's Resources for Tomorrow), which provides multiagency funding to pursue a sustainable water supply for the Nation as directed under the SECURE Water Act. Through the NWC, the USGS actively engages Federal, regional, and local stakeholders to identify research priorities and leverages current studies and program activities to provide information that is relevant at both the national and regional scales.

Fact Sheet

Electrochemical stabilization as a means of preventing ground failure in railroads

Laboratory and field data on electrochemical stabilization of clays, by three Russian authors, are here presented in translation. Abstracts of the Russian papers were published in May 1947 issue of the Engineering News Record (pp. 100-101). There exists also a small body of literature, in German and English, dealing with the electrochemical stabilization and related subjects. Elements of the electrochemical process were patented by Casagrande in Germany, shortly before the last war. Results of the Russians and of others, including the German patent, appear to be sound and interesting accordingly. Mechanism of the electrochemical stabilization, however, appears to be surmised rather than established. Unless the mechanism of such stabilization is understood in detail, little progress may be expected in field applications of the electrochemical method. Electroosmosis, a poorly reversible coagulation of the soil colloids, and introduction of exchangeable aluminum into the clay complex have been given credit for the ground-stabilizing effects of direct electrical current. Much remains to be done, as the reader may see, in developing further the theory of the method. A critical study is indicated, in this connection, by agencies or individuals qualified and equipped for basic research in soil physics. Optimum schedules for field treatments need be ascertained with particular care, to suit any given kind of material and environment. A wide range of variation in such schedules, is most certainly to be encountered in dealing with materials as diverse in their composition and properties as are clays. Any generalization on relationships between soil, electrolytes, moisture, and current could be premature if based on the Russian work alone. Stabilization of ground is a major engineering geologic problem of national interest. Needless to say, perhaps, that failures are to be expected, in laboratory and in the field, in this as well as in any other kind of research. To minimize probabilities of such failures, it may be recommended that investigators develop the electrochemical stabilization problem not merely against the relatively narrow background of soil mechanics, but with a certain feeling for geology, mineralogy, pedology, soil physics, and soil chemistry.

Open-File Report

A within-season approach for detecting early crop stage of corn and soybean using high temporal and spatial resolution imagery

Crop emergence is a critical stage for crop development and crop growth modeling. Mapping crop emergence using remote sensing data is challenging. Previous remote sensing phenology algorithms showed that crop stages could be detected around the V3-V4 (3 to 4 established leaves) vegetative stage. Traditional approaches have a strong assumption regarding the temporal evolution of plant growth and normally require a complete growth period of observations to define seasonal changes. Most approaches were not designed for the within-season mapping in the early growing season. In the current paper, we developed a new within-season emergence (WISE) approach to mapping crop green-up date using satellite observations during early growth stages. The approach was first optimized using high spatiotemporal resolution (10 m, 2 day revisit) imagery from the Vegetation and Environment monitoring New MicroSatellite (VENµS) research mission, and assessed using ground observations of early crop growth stages (emergence VE and one leaf V1 stages for corn, and emergence VE and unifoliolate VC stages for soybeans) collected over the Beltsville Agricultural Research Center (BARC) experimental fields in Beltsville, MD during the 2019 growing season. Results show that early crop growth stages can be reliably detected at sub-field scale about two weeks after crop emergence. The remote sensing green-up dates were about 4-5 days after crop emergence on average. Coefficients of determination (R2) between green-up dates and the mid-point dates of the early growth stages were above 0.90. The mean absolute differences, standard deviations, and root mean square errors comparing to the early growth stage mid-point dates were within six days. The maximum differences were within ±10 days across all fields. The WISE approach was assessed using operational Sentinel-2 data (10 m, 5 day revisit) in BARC. The detected green-up dates from Sentinel-2 were found close to VENµS results. Some fields were not detected due to the lack of observations during emergence dates. For independent evaluation, the WISE approach was applied over an agricultural watershed on the Maryland Eastern Shore using both VENµS and the harmonized Landsat and Sentinel-2 (HLS) data (30 m, 3-4 day revisit). The green-up dates were compared with crop progress reports of crop emergence dates from the National Agricultural Statistics Service (NASS) at the state-level. The WISE -detected green-up dates at the regional scale are within VE stage ranges but slightly earlier than NASS crop progress reports at the state-level. The WISE approach uses remote sensing observations during the early crop growth stages and has potential for operational application within the season using Sentinel-2 and HLS data.

Maryland

United States Geological Survey Yearbook, fiscal year 1978

Fiscal year 1978 saw the U.S. Geological Survey continuing to perform its basic historical missions of collecting, analyzing, and disseminating information about the Earth, its processes, and its water and mineral resources. Classifying Federal lands and supervising lessee mineral extraction operations on those lands were also major Survey concerns during the year. In addition, substantial progress was made in the exploration and assessment of the petroleum potential of the National Petroleum Reserve in Alaska, a recently assigned mission. These basic missions found expression in a wide range of program activities and interests as diverse as the sands of Mars and the volcanoes of Hawaii. Programs included assessment of numerous potential energy and mineral resources, study of earthquakes and other geologic hazards, appraisal of the magnitude and quality of the Nation's water resources, and supervision of lease operations on Federal lands. The Survey also was involved in developing data on land use and producing topographic, geologic, and hydrologic maps for public and private use. In cooperation with other Federal agencies, the Survey participated in studies under the U.S. Climate Program and continued its analysis of data received from the two Viking landers on the surface of Mars. On April 3, 1978, Dr. H. William Menard became the 10th Director of the U.S. Geological Survey. Dr. Menard, who, until his appointment, was Professor of Geology at the Scripps Institution of Oceanography, San Diego, Calif., brings to the Director's post the experience gained in a long and successful career as a marine geologist and oceanographer. He succeeds Dr. Vincent E. McKelvey, who continues with the Survey as a senior research scientist.

Yearbook

Regional chloride distribution in the Northern Atlantic Coastal Plain aquifer system from Long Island, New York, to North Carolina

The aquifers of the Northern Atlantic Coastal Plain are the principal source of water supply for the region’s nearly 20 million residents. Water quality and water levels in the aquifers, and maintenance of streamflow, are of concern because of the use of this natural resource for water supply and because of the possible effects of climate change and changes in land use on groundwater. The long-term sustainability of this natural resource is a concern at the local community scale, as well as at a regional scale, across state boundaries. In 2010, the U.S. Geological Survey (USGS) began a regional assessment of the Northern Atlantic Coastal Plain aquifers. An important part of this assessment is a regional interpretation of the extent of saltwater and the proximity of saltwater to fresh-groundwater resources and includes samples and published interpretations of chloride concentrations newly available since the last regional chloride assessment in 1989. This updated assessment also includes consideration of chloride samples and refined interpretations that stem from the 1994 discovery of the buried 35 million year old Chesapeake Bay impact structure that has substantially altered the understanding of the hydrogeologic framework and saltwater distribution in eastern Virginia. In this study, the regional area of concern for the chloride samples and interpretations extends from the Fall Line in the west to the outer edge of the Continental Shelf in the east and from the eastern tip of Long Island in the north to about halfway down the North Carolina coast in the south. Discussions of chloride distribution are presented for each of the 10 regional aquifer layers of the Northern Atlantic Coastal Plain, including the offshore extents. Maps of interpreted lines of equal concentration or isochlors were manually prepared for nine of the regional aquifers; a map was not prepared for the surficial regional aquifer. The isochlor interpretations include the offshore extent of the nine regional aquifers and are presented on a 1:2,000,000 scale base map. Vertically, the chloride samples and interpretations range from deepest (oldest) to shallowest (youngest)—Potomac-Patuxent, Potomac-Patapsco, Magothy, Matawan, Monmouth-Mount Laurel, Aquia, Piney Point, Lower Chesapeake, and Upper Chesapeake regional aquifers. The approach of this study maximizes the overall density of chloride information and data by assessing relevant published interpretations, all USGS chloride samples, and all relevant offshore samples in one comprehensive interpretation. Published isochlors, where they were interpreted by regional aquifer, were used as much as possible for this regional isochlor assessment. Publication dates for the isochlors used range from 1982 to 2015, and the scales for the isochlors range from local (county or municipality) to state (sub-regional) to regional. The USGS National Water Information System database provided well sample data for the parts of aquifers that are mainly beneath the land areas and yielded 37,517 water-quality records for 1903 through 2011. Published data reports from four phases of research-related offshore coring (1976, 1993, 1997, 2009) were the main source of water-quality data for the parts of aquifers from the shoreline to the outer edge of the Continental Shelf and yielded samples from multiple depths of each of 13 cores. This study also used interpretations and offshore core data from the last regional chloride assessment (1989) which, in addition to 7 offshore cores, included water-quality data from about 500 wells, and borehole geophysics interpretations from a subset of 11 wells. All published information and data that were used in this study were considered time independent and did not assess the published interpretations or data for temporal trends. The approach used here examined only published interpretations and available chloride data, and did not directly use supplemental techniques that can provide insight into the distribution of saltwater, such as geochemical characterization, borehole geophysical information, and geochronology. Isochlor maps for this study are limited to manual interpretations of the 250-milligram per liter (mg/L) and 10,000-mg/L boundaries developed for 9 of the 10 regional aquifers that constitute the regional hydrogeologic framework of the Northern Atlantic Coastal Plain. For a given aquifer, the approach was to initially consider published isochlor interpretations, where available, then to modify the published interpretations, if necessary, to the extent indicated by the well and core samples. The final step was to interpolate isochlors to the full extent of each aquifer layer in areas with sufficient samples or cited interpretations, or to extrapolate isochlors in areas with no samples or where samples were sparse. The principal limitation of this study is that, because of its regional extent, data and information density can vary greatly, and thus confidence in interpretations can vary widely for onshore and offshore areas across the study area. In areas of sparse data, some samples of elevated chloride could be misinterpreted as being part of a regional elevated chloride trend, and in other cases, an elevated concentration could be misinterpreted as being of only local importance. The interpretive work of this study was applied to a 1:2,000,000 scale base map. Locations of isochlors, wells, cores, political boundaries, and shorelines are meant to be considered approximate. The isochlors presented in this study were manually interpreted for each aquifer unit as a conceptual representation of an equal concentration line approximately in the middle of an aquifer’s thickness. Differences in chloride concentration lines between the top and bottom of an aquifer could be substantial, especially for the thick parts of aquifers, but that information is not presented in this regional assessment. Although additional offshore chloride data are available compared to 27 years ago (1989), the offshore information remains sparse, resulting in less confidence in the offshore interpretations than in the onshore interpretations. Regionally, the 250- and 10,000-mg/L isochlors tend to map progressively eastward from the deepest to the shallowest aquifers across the Northern Atlantic Coastal Plain aquifer system but with some exceptions. The additional data, conceptual understanding, and interpretations in the vicinity of the buried Chesapeake Bay impact structure in eastern Virginia resulted in substantial refinement of isochlors in that area. Overall, the interpretations in this study are updates of the previous regional study from 1989 but do not comprise major differences in interpretation and do not indicate regional movement of the freshwater-saltwater interface since then.

Delaware, Maryland, New Jersey, New York, North Ca

Changes in ground-water quality in the Canal Creek Aquifer between 1995 and 2000-2001, West Branch Canal Creek area, Aberdeen Proving Ground, Maryland

Since 1917, Aberdeen Proving Ground, Maryland has been the primary chemical-warfare research and development center for the U.S. Army. Ground-water contamination has been documented in the Canal Creek aquifer because of past disposal of chemical and ordnance manufacturing waste. Comprehensive sampling for volatile organic compounds in ground water by the U.S. Geological Survey in the West Branch Canal Creek area was done in June?October 1995 and June?August 2000. The purpose of this report is (1) to compare volatile organic compound concentrations and determine changes in the ground-water contaminant plumes along two cross sections between 1995 and 2000, and (2) to incorporate data from new piezometers sampled in spring 2001 into the plume descriptions. Along the southern cross section, total concentrations of volatile organic compounds in 1995 were determined to be highest in the landfill area east of the wetland (5,200 micrograms per liter), and concentrations were next highest deep in the aquifer near the center of the wetland (3,300 micrograms per liter at 35 feet below land surface). When new piezometers were sampled in 2001, higher carbon tetrachloride and chloroform concentrations (2,000 and 2,900 micrograms per liter) were detected deep in the aquifer 38 feet below land surface, west of the 1995 sampling. A deep area in the aquifer close to the eastern edge of the wetland and a shallow area just east of the creek channel showed declines in total volatile organic compound concentrations of more than 25 percent, whereas between those two areas, con-centrations generally showed an increase of greater than 25 percent between 1995 and 2000. Along the northern cross section, total concentrations of volatile organic compounds in ground water in both 1995 and 2000 were determined to be highest (greater than 2,000 micrograms per liter) in piezometers located on the east side of the section, farthest from the creek channel, and concentrations were progressively lower at piezometer locations closer to the creek channel. Total volatile organic compound concentrations increased more than 25 percent in some areas in the middle depths of the aquifer; however, it could not be determined if a defined plume was moving farther downgradient along ground-water flow paths toward the creek channel, or vertically downward because of density differences within the aquifer.

Water-Resources Investigations Report

Population dynamics and interagency management of the bloater (Coregonus hoyi) in Lake Michigan, 1967-1982

This paper examines the population dynamics of the bloater (Coregonus hoyi) in Lake Michigan during a progressive decline in abundance from about the mid1960s through the mid1970s, and during a subsequent recovery that is still underway. The study focused on developing a data base and methodology for projecting fishable surpluses, in cooperation with a chub technical committee sponsored by the Great Lakes Fishery Commission. The Technical Committee was formed in 1974 because of depletion of bloaters and other deepwater ciscoes or 'chubs,' as they are known by Great Lakes fishermen. Subsequently the Technical Committee recommended a lakewide ban on chub fishing that was fully enacted by the states of Illinois, Michigan, and Wisconsin in 1976. With the Committee's help, commercial fishery statistics and stock assessment data were obtained from state and federal research files and used with various indirect analytical techniques to estimate relevant population parameters. The lakewide fishable stock in fall 1973, before the fishery was affected by several incomplete closures and then by the lakewide ban, was estimated as 48 to 73 million bloaters weighing 20 to 29 million pounds. Exploitation of the estimated stock varied considerably among 11 statistical districts in the several jurisdictions. Yield to the fishery exceeded production by the stock in some districts. Theoretical yields of bloaters totaling 3.59 to 3.72 million pounds were projected from 1979 for all waters combined. These projected yields were intended as guidelines for experimental quotas that the states might establish, because the population had stabilized and the potential for recruitment had improved in most areas.

Technical Report

Contemporary environmental assessment using a viability analysis in a large river system to inform restoration and adaptive management decisions

As large-scale restoration plans for degraded aquatic habitats evolve, it is essential that multiorganizational collaborations have a common vision to achieve consensus on restoration goals. Development of restoration targets and postrestoration monitoring strategies can be focused using a viability analysis framework that supports an adaptive management process. Viability analysis is a robust and accommodating framework, adaptable to any restoration monitoring program and, through the determination of common desired endpoints, can aid consensus building and collaboration across jurisdictional boundaries. In the St. Clair-Detroit River System, which is the Great Lakes connecting channel between southern Lake Huron and western Lake Erie, a viability analysis framework was used to evaluate environmental parameters associated with fisheries and aquatic restoration efforts and to gauge the overall health of the aquatic environment. Steps to derive the viability analysis were as follows: (1) establishing meaningful baseline metrics, (2) identifying information deficiencies, and (3) placing the context of current conditions into a usable format for managers and practitioners. Most geographic segments were designated in overall fair condition, and the conservation targets were designated in either good or fair condition, based on available assessed indicators. Many indicators were unable to be assessed or assigned condition status, which identified research and monitoring data gaps. Metrics associated with native migratory fishes, Lake St. Clair, and islands are generally in better condition than metrics associated with the coastal terrestrial systems, aerial migrants, and coastal wetlands. These results were not unexpected given the highly urbanized landscape of the St. Clair-Detroit River System. Resource managers in the corridor can use these results to identify knowledge gaps, research and restoration priorities, and to assess progress towards meeting restoration goals.

Michigan, Ontario

Geochemical data for samples collected in 2007 near the concealed pebble porphyry Cu-Au-Mo deposit, southwest Alaska

In the summer of 2007, the U.S. Geological Survey (USGS) began an exploration geochemical research study over the Pebble porphyry copper-gold-molydenum (Cu-Au-Mo) deposit in southwest Alaska. The Pebble deposit is extremely large and is almost entirely concealed by tundra, glacial deposits, and post-Cretaceous volcanic and volcaniclastic rocks. The deposit is presently being explored by Northern Dynasty Minerals, Ltd., and Anglo-American LLC. The USGS undertakes unbiased, broad-scale mineral resource assessments of government lands to provide Congress and citizens with information on national mineral endowment. Research on known deposits is also done to refine and better constrain methods and deposit models for the mineral resource assessments. The Pebble deposit was chosen for this study because it is concealed by surficial cover rocks, it is relatively undisturbed (except for exploration company drill holes), it is a large mineral system, and it is fairly well constrained at depth by the drill hole geology and geochemistry. The goals of the USGS study are (1) to determine whether the concealed deposit can be detected with surface samples, (2) to better understand the processes of metal migration from the deposit to the surface, and (3) to test and develop methods for assessing mineral resources in similar concealed terrains. This report presents analytical results for geochemical samples collected in 2007 from the Pebble deposit and surrounding environs. The analytical data are presented digitally both as an integrated Microsoft 2003 Access? database and as Microsoft 2003 Excel? files. The Pebble deposit is located in southwestern Alaska on state lands about 30 km (18 mi) northwest of the village of Illiamna and 320 km (200 mi) southwest of Anchorage (fig. 1). Elevations in the Pebble area range from 287 m (940 ft) at Frying Pan Lake just south of the deposit to 1146 m (3760 ft) on Kaskanak Mountain about 5 km (5 mi) to the west. The deposit is in an area of relatively subdued topographic relief with an elevation of around 300 m (1000 ft). This portion of Alaska is part of the subarctic regime mountains division, Yukon intermontane plateaus-tayga-meadow province ecoregion, as defined by Bailey (U.S. Forest Service, 2007). Between June 28th and July 12th, 2007, scientists from the USGS collected soil, water, stream sediment, vegetation, heavy-mineral concentrate, till, and rock samples from the deposit area. This report contains analytical results for soil, water, stream sediment, and vegetation samples. Analyses for the heavy-mineral concentrate, till, and rock samples are still in progress. The sampling was undertaken during relatively dry and stable weather conditions. Only minor scattered rain showers occurred during the sampling period, so surface conditions were largely unaffected by weather. The predominant sample media collected were soils and surface waters. Soil and water (mostly from ponds and springs, some from small creeks) samples were collected along a single 7.8 km-long (4.8 mi) east-west traverse across the Pebble East and Pebble West zones and from more distal background areas around Koktuli and Kaskanak Mountains. Sample sites are shown on figure 2 and plate 1, and locality coordinates are provided in the accompanying Access and Excel files named FieldSite. Water samples were analyzed by USGS laboratories with one subset analyzed by Activation Laboratories (Actlabs), as indicated below. Soils and stream sediments were analyzed for their total content by SGS Minerals Services under a contract with the USGS. Soil samples were also leached by selected partial-extraction leaching procedures and then analyzed by several commercial laboratories, as described below. Vegetation samples were analyzed as indicated below.

Alaska

USGS research on energy resources, 1986; program and abstracts

The extended abstracts in this volume are summaries of the papers presented orally and as posters in the second V. E. McKelvey Forum on Mineral and Energy Resources, entitled "USGS Research on Energy Resources-1986." The Forum has been established to improve communication between the USGS and the earth science community by presenting the results of current USGS research on nonrenewable resources in a timely fashion and by providing an opportunity for individuals from other organizations to meet informally with USGS scientists and managers. It is our hope that the McKelvey Forum will help to make USGS programs more responsive to the needs of the earth science community, particularly the mining and petroleum industries, and Win foster closer cooperation between organizations and individuals. The Forum was named after former Director Vincent E. McKelvey in recognition of his lifelong contributions to research, development, and administration in mineral and energy resources, as a scientist, as Chief Geologist, and as Director of the U.S. Geological Survey. The Forum will be an annual event, and its subject matter will alternate between mineral and energy resources. We expect that the format will change somewhat from year to year as various approaches are tried, but its primary purpose will remain the same: to encourage direct communication between USGS scientists and the representatives of other earth-science related organizations. Energy programs of the USGS include oil and gas, coal, geothermal, uranium-thorium, and oil shale; work in these programs spans the national domain, including surveys of the offshore Exclusive Economic Zone. The topics selected for presentation at this McKelvey Forum represent an overview of the scientific breadth of USGS research on energy resources. They include aspects of petroleum occurrence in Eastern United States rift basins, the origin of magnetic anomalies over oil fields, accreted terranes and energy-resource implications, coal quality, geothermal energy sources, integrated geology and chemistry in uranium-deposit studies, and interpretations of sea-floor geology seen in reconnaissance-scale sidescan-sonar mosaics of the Gulf of Mexico and west coast Exclusive Economic Zone. Data are presented that are being used in building models of geothermal energy settings, basin histories, and the occurrence of energy resources. In addition to the technical sessions presenting the results of USGS research, each congressionally mandated USGS Mineral Resource Program has a display outlining plans and progress. We are all excited about this continuing opportunity to disseminate and discuss our research with our colleagues in industry and academia, and we welcome your suggestions on improving this series of Forums.

Circular

Marine heatwaves affect breeding, diet and population size but not body condition of a range-edge little penguin colony

Significant marine heatwaves (MHWs) developed along the Western Australian coast in 1999 and 2011. Despite ecosystem losses and the southwards occurrence of many tropical fish species during and after the extreme MHW in 2011, there have been few studies on the effects of this MHW on seabirds, and no biological impacts related to the 1999 MHW have been reported. Using data from 1986-2019, we investigated the impacts of these events on breeding outcomes, body condition, diet composition, population size and mortality of little penguins on Penguin Island, in the temperate waters off Western Australia. Breeding outcomes were negatively impacted by the MHWs but body condition was not. Diet composition changed after the MHW, with sandy sprat Hyperlophus vittatus , the penguins’ typical major prey component, replaced by scaly mackerel Sardinella lemuru , a tropical fish species. Using an open robust design analysis that accounts for imperfect capture probabilities and staggered annual arrival and departure dates, we found that the population decreased by 80% following the 2011 MHW. Finally, more penguins died from starvation or from novel protozoal parasitic infections in 2011 and 2012 that were potentially introduced with the changed diet. This research highlights that the temporal and spatial influence of MHWs on seabirds depends on several factors. Furthermore, the magnitude and direction of a prey species’ response can be very localised and have significant impacts on avian predators. There are no obvious ways to mediate climate effects, but perhaps measures taken to reduce any synergistic impacts on prey abundance, particularly during MHW events, could be effective.

Penguin Island

Metallogeny of the Great Basin: Crustal evolution, fluid flow, and ore deposits

The Great Basin physiographic province in the Western United States contains a diverse assortment of world-class ore deposits. It currently (2006) is the world’s second leading producer of gold, contains large silver and base metal (Cu, Zn, Pb, Mo, W) deposits, a variety of other important metallic (Fe, Ni, Be, REE’s, Hg, PGE) and industrial mineral (diatomite, barite, perlite, kaolinite, gallium) resources, as well as petroleum and geothermal energy resources. Ore deposits are most numerous and largest in size in linear mineral belts with complex geology. U.S. Geological Survey (USGS) scientists are in the final year of a research project initiated in the fall of 2001 to increase understanding of relations between crustal evolution, fluid flow, and ore deposits in the Great Basin. Because of its substantial past and current mineral production, this region has been the focus of numerous investigations over the past century and is the site of ongoing research by industry, academia, and state agencies. A variety of geoinformatic tools was used to organize, reinterpret, and display, in space and time, the large amounts of geologic, geophysical, geochemical, and hydrologic information deemed pertinent to this problem. This information, in combination with concentrated research on (1) critical aspects of the geologic history, (2) an area in northern Nevada that encompasses the major mineral belts, and (3) important mining districts and deposits, is producing new insights about the interplay between key tectonic events, hydrothermal fluid flow, and ore genesis in mineral belts. The results suggest that the Archean to Holocene history of the Great Basin was punctuated by several tectonic events that caused fluids of different origins (sea water, basinal brine, meteoric water, metamorphic water, magmatic water) to move through the crust. Basement faults reactivated during these events localized deformation, sedimentation, magmatism, and hydrothermal fluid flow in overlying rocks to form mineral belts that contain ore deposits of different types and ages that are locally superimposed (demonstrating inheritance). Fluid flow in these systems also was influenced by the distribution of permeable lithologies and paleotopographic highs and lows. Hydrothermal fluids evolved from their initial chemistries towards compositions that reflect the ƒ O 2 and ƒ S 2 buffering capacity of, and the ligands and metals present in, the rocks (±older mineralization) through which they moved. In northern Nevada, where gold deposits are relatively common, carbonaceous, pyritic strata buffered fluids of diverse origins to H 2 S-rich compositions so they could transport gold repeatedly over Paleozoic-Cenozoic time (convergent evolution). Ore formed where metal-laden fluids encountered effective physicochemical traps. Maps of Neogene basin fill and erosion surfaces identify areas where preexisting ore deposits have been progressively exposed or concealed. Comparisons with analogous terrains and deposit types in other parts of the world provide global context. The initial findings and some of the databases, geologic maps, sections, reconstructions, hydrogeologic models, topical syntheses, regional overviews, short courses, field guides, and deposit comparisons produced by project staff and associated managers, contractors, and collaborators have been presented in numerous abstracts, symposia, USGS publications, and professional journals over the last 5 years (see the extensive bibliography). Notable among these was the 2005 Geological Society of Nevada symposium in Reno, Nevada, and the 2005 Geological Society of America annual meeting in Salt Lake City, Utah, where project results were presented to audiences from around the nation and world. The final results of the project will be submitted for publication in 2007 to appropriate USGS and professional journals. A special issue of GEOSPHERE, scheduled for publication in 2007, will be devoted to the results of this project and related work. This special issue will reach an international audience and be available worldwide on the internet. Much of the research for this project has concentrated on areas that will receive the focused attention of the mining industry in the future. As such, the data and interpretations generated by this project have direct use for land-use managers in Federal, State, and local agencies. Improved hydrogeologic models developed by this project will considerably enhance ongoing and future water resource investigations in the region. The increased understanding of when, where, and how hydrothermal systems produce significant economic deposits has direct uses for mineral exploration and for future USGS mineral resource assessments in the Great Basin and other parts of the world.

Great Basin

Seasonal and long-term clarity trend assessment of Lake Tahoe, California–Nevada

The clarity of Lake Tahoe, observed using a Secchi disk on a regular basis since the late 1960s, continues to be a sentinel metric of lake health. Water clarity is influenced by physical and biological processes and has declined in the five decades of monitoring, revealing differences between summer (June–September) and winter (December–March). This document summarizes key findings of a study of Lake Tahoe water clarity, including long-term variability and the relative importance of several influencing variables and processes. This study, prepared in cooperation with the Nevada Division of Environmental Protection, focused on (1) an apparent divergence in clarity trends between summer and winter periods, (2) observed changes in in-lake physical and ecological variables that may influence or control seasonal and annual clarity trends, and (3) five research hypotheses regarding lake clarity that were developed by Lake Tahoe management agencies. Previously collected data were used to complete this study. Trend analysis confirmed that winter clarity stabilized (that is, there is no longer a statistically significant trend up or down) during the last 20 years. Evaluation of clarity for selected months in the 50-year Secchi disk clarity dataset showed that only two summer months, July and August, had statistically significant decreases in clarity from 2000–19. Different subsets of available data were analyzed to reveal the presence or absences of trends for each season, decade, and month. Five hypotheses related to lake clarity were part of the study described by this report. Hypothesis 1 stated that clarity is controlled predominantly by the distribution and volumetric density of fine particles in suspension. This hypothesis was studied using available data describing in-lake fine (0–20 micrometers) particles from 2008–19. Water clarity was negatively correlated with in-lake particle abundance, with particles in the 1.0-4.6 μm range having the greatest effect, consistent with light-scattering theory. Estimated abundances of diatoms of the genus Cyclotella also were found to be negatively correlated with clarity. Data limitations precluded a complete investigation of hypothesis 2, which stated that the observed improvements in winter water clarity are a response to decreasing fine suspended-sediment concentrations in the lake resulting from load reductions from upland sources in and near urbanized areas. Data describing fine-sediment loading from urban areas to the lake were only available since 2014, and only once or twice per month. A slight, statistically significant, negative correlation was identified between urban fine-particle loading and monthly lake clarity with a 4-month lag. Particle abundance in monitored streams is highly correlated with simultaneous particle abundance in the lake. Hypothesis 3 stated that changing hydrodynamic conditions in the lake are increasing thermal stability and resistance to mixing. Trend analyses performed on stability index and buoyancy frequency time series computed from long-term observations of lake temperatures support the hypothesis that hydrodynamic conditions have evolved since 1969 to increase the lake’s resistance to mixing. The date of maximum mixing in winter has become progressively earlier in the year. Lake density stratification, defined using the stability index, is commencing earlier in the year and extending a month longer than in the early years of the monitoring program. Hypothesis 4 stated that the trend of decreasing summer clarity is a result of earlier, prolonged, and more intense stratification. Statistically significant correlations were found between summer clarity and (1) date of onset of stratification, (2) duration of stratification, and (3) buoyancy frequency. Hypothesis 5 stated that ecological (food web) interactions are causing changes in the trends of seasonal or annual clarity; data supporting hypothesis 5 were limited to examples from other systems and to intermittent monitoring of Lake Tahoe and Emerald Bay. The resulting narrative assessment was motivated by a 6-year study of Mysis shrimp disappearance and return in Emerald Bay. The available data and a large body of published literature are consistent with the inference that Mysis shrimp-induced food web changes are causing changes in the trends of seasonal or annual clarity. This food-web study focused on the relations between introduced Mysis shrimp, the native cladocerans ( Daphnia and Bosmina ) that were largely eliminated following Mysis introduction, and the effect on fine particles within the lake. The records of Mysis and other zooplankton data for Lake Tahoe are episodic and have large gaps. Consequently, statistical analyses could not be conducted to compare zooplankton data with other variables. The long-term record, however, indicates that the key effect was a change to the phytoplankton assemblage, where larger diatoms disappeared, likely due to Mysis grazing, only to be replaced by Cyclotella that are an order-of-magnitude smaller and have increased the abundance and volumetric density of total fine particles in suspension (biotic and abiotic).

California

Geology and coastal hazards in the northern Monterey Bay, California: Field trip guidebook, November 4, 2000

The purpose of this field trip is to explore the relationships between local geology, coastal hazards, and human influences in the northern Monterey Bay, which is a tectonically active high wave energy coastal environment. Seacliffs, shore platforms, pocket beaches and a headland/embayment morphology characterize this rocky coastline. Many studies of the onshore and offshore geology and geophysics, the local wave climate, and the effects of large storm events and earthquakes on the coastline have been conducted in this region (see Related Reading section). This field trip summarizes many of the findings of these research investigations, and also considers the relationship between the rates and styles of seacliff erosion and the variations in the local geology. The field trip stops allow the participant to examine seacliff sites of different geological lithologies, geographic orientations, and varying protection from wave attack, and consider how these variables affect not only the rate or magnitude of seacliff retreat but also the styles of retreat. In general the two primary forcing factors in the retreat of seacliffs are marine and terrestrial processes. At the various field trip stops, the relative importance of these processes in shaping the coastline at that particular location will be explored. Where beaches have developed, whether naturally or by emplacement of man-made structures, field trip stops are designed to look at the occurrence of the beaches (why they exist where they do) and to understand the response of the beaches to large storm events. Finally, this trip focuses on the various coastline protection structures that have been built in the area, and their effectiveness in protecting development on the beaches or at the tops of the seacliffs. The first stop of the trip is the Long Marine Lab facility where the seacliffs are composed of the most resistant geological unit in the area, the Miocene Santa Cruz Mudstone. This stop also includes discussion of some of the interesting geological features associated with this part of the Bay, including the arches at Natural Bridges State Beach. The field trip stops are progressively east and south, moving into the inner Monterey Bay, as well as into the less resistant lithologies of the late Miocene to Pliocene Purisima Formation, and finally the Pleistocene Aromas Sand. The route will follow the coast wherever possible so participants can get a full perspective of the northern Monterey Bay coastline, even where stops have not been planned.

California

U.S. Geological Survey spatial data access

The U.S. Geological Survey (USGS) has done a progress review on improving access to its spatial data holdings over the Web. The USGS EROS Data Center has created three major Web-based interfaces to deliver spatial data to the general public; they are Earth Explorer, the Seamless Data Distribution System (SDDS), and the USGS Web Mapping Portal. Lessons were learned in developing these systems, and various resources were needed for their implementation. The USGS serves as a fact-finding agency in the U.S. Government that collects, monitors, analyzes, and provides scientific information about natural resource conditions and issues. To carry out its mission, the USGS has created and managed spatial data since its inception. Originally relying on paper maps, the USGS now uses advanced technology to produce digital representations of the Earth’s features. The spatial products of the USGS include both source and derivative data. Derivative datasets include Digital Orthophoto Quadrangles (DOQ), Digital Elevation Models, Digital Line Graphs, land-cover Digital Raster Graphics, and the seamless National Elevation Dataset. These products, created with automated processes, use aerial photographs, satellite images, or other cartographic information such as scanned paper maps as source data. With Earth Explorer, users can search multiple inventories through metadata queries and can browse satellite and DOQ imagery. They can place orders and make payment through secure credit card transactions. Some USGS spatial data can be accessed with SDDS. The SDDS uses an ArcIMS map service interface to identify the user’s areas of interest and determine the output format; it allows the user to either download the actual spatial data directly for small areas or place orders for larger areas to be delivered on media. The USGS Web Mapping Portal provides views of national and international datasets through an ArcIMS map service interface. In addition, the map portal posts news about new map services available from the USGS, many simultaneously published on the Environmental Systems Research Institute Geography Network. These three information systems use new software tools and expanded hardware to meet the requirements of the users. The systems are designed to handle the required workload and are relatively easy to enhance and maintain. The software tools give users a high level of functionality and help the system conform to industry standards. The hardware and software architecture is designed to handle the large amounts of spatial data and Internet traffic required by the information systems. Last, customer support was needed to answer questions, monitor e-mail, and report customer problems.

Journal of Geospatial Engineering

Design concepts for a Global Telemetered Seismograph Network

This study represents a first step in developing an integrated, real-time global seismic data acquisition system a Global Telemetered Seismograph Network (GTSN). The principal objective of the GTSN will be to acquire reliable, high-quality, real-time seismic data for rapid location and analysis of seismic events. A secondary, but important, objective of the GTSN is to augment the existing off-line seismic data base available for research. The deployment of the GTSN will involve a variety of interrelated activities development of the data acquisition and receiving equipment, establishment of satellite and terrestrial communication links, site selection and preparation, training of station personnel, equipment installation, and establishment of support facilities. It is a complex program and the development of a sound management plan will be essential. The purpose of this study is not to fix design goals or dictate avenues of approach but to develop working concepts that may be used as a framework for program planning. The international exchange of seismic data has been an important factor in the progress that has been made during the past two decades in our understanding of earthquakes and global tectonics. The seismic data base available for analysis and research is derived principally from the Global Seismograph Network (GSN), which is funded and managed by the U.S. Geological Survey (USGS). The GSN comprises some 120 seismograph stations located in more than 60 countries of the world. Established during the 1960 s with the installation of the World-Wide Standardized Seismograph Network (WWSSN) , the GSN has been augmented in recent years by the installation of more advanced data systems, such as the Seismic Research Observatories (SRO), the modified High-Gain LongPeriod (ASRO) seismographs, and the digital WWSSN (DWWSSN). The SRO, ASRO, and DWWSSN stations have the common, distinctive feature of digital data recording, so they are known collectively as the Global Digital Seismograph Network (GDSN). The fundamental objective in operating the GSN is to create and update a seismic data base that is accessible without restrictions to organizations and research scientists throughout the world. The USGS provides cooperating stations with instrumentation, training, and continuing support, including supplies and on-site maintenance. In return, the host organization operates the equipment and sends the recorded data to the USGS. Analog data (seismograms) are microfilmed and about four million copies are requested annually by researchers. Digital data, which are recorded on magnetic tape, are organized by the USGS Albuquerque Seismological Laboratory (ASL) into networkday tapes and copies of the day tapes are furnished to data users through national and regional data centers. After copying, original data are returned to the stations and used for local research. Most of the stations in the GSN also provide the USGS with seismic readings « phase arrival times and amplitudes scaled from the seismograms. These readings are transmitted on a daily or biweekly basis via commercial or diplomatic communication channels. They are used by the USGS National Earthquake Information Service (NEIS) to determine the location and magnitude of earthquakes occurring throughout the world. The results are published monthly in bulletins that are distributed to the participating stations and virtually all scientific organizations that are involved in seismological studies. It is a much-valued service that provides a current, updated catalog of seismic activity on a global scale. The NEIS also has the responsibility for rapid reporting of large and potentially destructive earthquakes. The NEIS issues news bulletins as soon as possible after the occurrence of magnitude 6.5 or greater earthquakes (magnitude 5 or greater in the conterminous United States). The news bulletins are sent to disaster relief, public safety, and other interested organizations. Tsunami warnings issued to countries bordering the Pacific Ocean are based initially on earthquake location and magnitude data. Rapid reporting of earthquakes requires real-time waveform data or readings. Currently, signals are being telemetered from more than thirty stations in the United States to the NEIS, which is located in Golden, Colorado. An extension of the telemetry network to other countries will provide the seismological community with a significantly improved means of monitoring earthquake activity in real time; it will lower the response time for determining the location and magnitude of potentially destructive or tsunamigenic earthquakes and it will provide more timely information that may be needed by governments to respond promptly.

Open-File Report

Ecological requirements for pallid sturgeon reproduction and recruitment in the Missouri River—A synthesis of science, 2005 to 2012

This report is intended to synthesize the state of the scientific understanding of pallid sturgeon ecological requirements to provide recommendations for future science directions and context for Missouri River restoration and management decisions. Recruitment of pallid sturgeon has been low to non-existent throughout its range. Emerging understanding of the genetic structure of pallid sturgeon populations sets a broad framework for species and river management decisions, including decisions about managing the future genetic diversity of the species, but also decisions about where and what type of river restoration actions will be effective for subpopulations of this highly migratory species. Adult pallid sturgeon may migrate hundreds of kilometers (km) to spawn and their progeny may disperse even greater distances downstream as drifting free embryos. As a result of their complex life history pallid sturgeon naturally exploit a wide range of habitats during their life cycles. The construction of dams and reservoirs has fragmented habitats and may have shifted Missouri River subpopulations downstream. Research has not identified one primary biological or ecological constraint that appears to limit populations of the pallid sturgeon. With the present (2013) state of knowledge many life stages and life-stage transitions cannot be ruled out as contributing to recruitment failure. Biological opinions in 2000 (and amended in 2003) presented the dominant hypotheses for recruitment failure that existed at that time. Emphasis was on the role of the flow regime, specifically spring flow pulses (“spring rises”), to condition spawning substrate and cue reproductive aggregations and migrations, and on low flows and additional slow, shallow-water area to serve as rearing habitat for age-0 to juvenile pallid sturgeon. Studies on spawning habitat dynamics have documented that habitat patches selected for spawning by fish in the Lower Missouri River (Missouri River downstream from Gavins Point Dam to the confluence with the Mississippi River) are dominantly on outside, revetted bends in the deepest, fastest, and most turbulent water. Studies in more natural habitat on the Yellowstone River have documented spawning in convergent flow in the middle of the channel on discrete patches of gravel within a sand-dominated channel, an arrangement that may be more effective in attracting aggregations of reproductive fish compared to the nearly continuous revetment on the Lower Missouri River. Pallid sturgeon spawn in the spring and early summer during periods of increasing day length. Water temperature consistently exerts a threshold effect for spawning at 16–18 °C. In addition, the role of water temperature is indicated by pauses and reversals in upstream migrations that have been associated with cold weather fronts that create a transient decrease in water temperature. From 2005 to 2012 on the Lower Missouri River, no obvious relations between flow pulses and fish movements and spawning behaviors have been apparent. However, pallid sturgeon tracking at the Upper Missouri–Yellowstone confluence indicates that in most years, most telemetered pallid sturgeon migrate out of the Missouri River and into the Yellowstone River in the June–July timeframe in association with the spring pulse. This pattern was disrupted in 2011 when a high flow pulse with warm temperatures and high turbidity emanated from the Milk River, followed by record releases from Fort Peck Dam, and 36–39 percent of the telemetered population migrated up the Upper Missouri. This result supports the hypothesis that sufficiently large flow pulses may trigger migration and aggregation but it is not clear that functional pulses are within reservoir management authorities. Notably, a pallid sturgeon free embryo was captured on the Upper Missouri River in 2011 and another single, genetically confirmed embryo was captured on the Yellowstone River in 2012. Research on free-embryo drift has indicated the potential for hundreds of miles of downstream dispersal. Lack of distance to accommodate the extended downstream dispersal period of free embryos on the Upper Missouri and Yellowstone Rivers is the predominant hypothesis for recruitment failure in the upper basin. Long drift distances in the Lower Missouri River may be responsible for shifting Lower Missouri River sub-populations further into the Middle Mississippi River. Physical understanding of drift processes indicates that mean velocities could be slowed through decreased discharges or increased channel hydraulic radius (width and topographic diversity) to reduce free-embryo dispersal distances. In addition, the probability that free embryos are transported into and retained in channel-margin habitats is theoretically amenable to channel re-engineering that would increase cross-channel secondary currents in bends or channel expansions. Considerable uncertainty persists, however, about whether extended drift of Lower Missouri River larvae is responsible for recruitment failure. If drift distance is limiting, it is important to discern whether it would be advisable to retain larvae within the Missouri River, and where along the river restoration projects should be placed to optimize survival and growth of age-0 and juvenile sturgeon. Longitudinal differences in female pallid sturgeon fecundity lend support to the hypothesis that recruitment failure may be due, in part, to fish having insufficient nutrition to produce the numbers of gametes needed for the population to grow, perhaps because of simultaneous declines in prey-fish populations and their habitats. Establishing a chain of causality from habitat decline, to prey-fish populations, to sturgeon diets, to sturgeon fecundity, and to pallid sturgeon population growth presents a considerable scientific challenge. In addition to the dominant hypotheses relating pallid sturgeon populations to changes in flow regime and channel morphology, other factors have been identified that might be sources of stress and contribute to recruitment failure. Among these are water quality and contaminants. Ambient water-quality monitoring on the Missouri River has demonstrated summer episodes when dissolved oxygen dips below 5 milligrams per liter, a threshold that may be stressful especially to age-0 and juvenile sturgeon. Documented cases of intersex in shovelnose and pallid sturgeon indicate that agricultural and municipal sources of endocrine disrupting chemicals also may have a role in pallid sturgeon recruitment failure. Scientific understanding of the ecological requirements of pallid sturgeon has increased almost exponentially in the last two decades, and efforts are now turning from understanding fundamental biology of the species to quantifying how population dynamics relate to potential management actions. Progress in developing the science needed to inform management actions on the Missouri River may benefit from continuation of monitoring of reproductive cycles, reproductive movements, growth, and survival of telemetry tagged adults, increased emphasis on focused, complementary field and laboratory studies of factors influencing early life history, implementation of studies to resolve the role of food limitations in growth, survival, and reproductive condition, and implementation of studies designed specifically to parameterize models linking management to populations.

Missouri River