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At least 109 records · Page 6Linked to original sources
USGS2006

Water-quality, bed-sediment, and biological data (October 2004 through September 2005) and statistical summaries of data for streams in the Upper Clark Fork Basin, Montana

Water, bed sediment, and biota were sampled in streams from Butte to below Missoula as part of a long-term monitoring program, conducted in cooperation with the U.S. Environmental Protection Agency, to characterize aquatic resources in the upper Clark Fork basin of western Montana. Sampling sites were located on the Clark Fork, six major tributaries, and three smaller tributaries. Water-quality samples were collected periodically at 18 sites during October 2004 through September 2005 (water year 2005). Bed-sediment and biological samples were collected once in August 2005. The primary constituents analyzed were trace elements associated with tailings from historical mining and smelting activities. This report summarizes the results of water-quality, bed-sediment, and biota samples col-lected in water year 2005 and provides statistical summaries of data collected since 1985. Water-quality data for samples collected periodically from streams include concentrations of selected major ions, trace ele-ments, and suspended sediment. Daily values of suspended-sed-iment concentration and suspended-sediment discharge were determined for three sites. Bed-sediment data include trace-ele-ment concentrations in the fine-grained fraction. Bio-logical data include trace-element concentrations in whole-body tissue of aquatic benthic insects. Quality-assurance data are reported for analytical results of water, bed sediment, and biota. Statistical summaries of water-quality, bed-sediment, and biological data are provided for the period of record since 1985 for each site.

Montana↗
USGS2019

Life history, genetics, range expansion and new frontiers of the lionfish (Pterois volitans, Perciformes: Pteroidae) in Latin America

Pterois volitans (lionfish) is a midsize predatory fish commonly found in waters of the western Pacific and Indian Ocean. The species was first documented in Dania Beach, Florida (northwestern Caribbean) in 1985. Since that time the species has expanded its range rapidly to the Northwestern Atlantic Ocean, Gulf of Mexico, and Caribbean Sea. Since its introduction P. volitans has changed community structure and biodiversity of Caribbean reef communities and other coastal tropical ecosystems. Continuous introductions (accidental or intentional), limited natural predators, naïve-range prey behavior, high predation rates on competitors, continuous reproduction, and an extended period of larval dispersal have been the keys for successful invasion and rapid range extension of P. volitans . This invasion has become so severe that it has been recognized as one of the world’s top conservation issues. Here, we review the life history, behavior, and historical and contemporary genetic patterns that facilitate expansion and the colonization process. A greater understanding of lionfish biology, ecology, and the changes related to its present condition as a super-invader could improve current and future management strategies and new detection and response methodologies. We also examine new invasion frontiers that this species has the potential to colonize such as the eastern Pacific. This information will provide managers, the scientific community, and the civil society better tools for eradication, control and management of future invasions of this and other invasive species.

Caribbean Sea, Latin America↗
USGS2013

Quagga and zebra mussels: biology, impacts, and control

Quagga and Zebra Mussels: Biology, Impacts, and Control , Second Edition provides a broad view of the zebra/quagga mussel issue, offering a historic perspective and up-to-date information on mussel research. Comprising 48 chapters, this second edition includes reviews of mussel morphology, physiology, and behavior. It details mussel distribution and spread in Europe and across North America, and examines policy and regulatory responses, management strategies, and mitigation efforts. In addition, this book provides extensive coverage of the impact of invasive mussel species on freshwater ecosystems, including effects on water clarity, phytoplankton, water quality, food web changes, and consequences to other aquatic fauna. It also reviews and offers new insights on how zebra and quagga mussels respond and adapt to varying environmental conditions. This new edition includes seven video clips that complement chapter text and, through visual documentation, provide a greater understanding of mussel behavior and distribution.

Book↗
USGS2015

Resilience and risk: a demographic model to inform conservation planning for polar bears

Climate change is having widespread ecological effects, including loss of Arctic sea ice. This has led to listing of the polar bear ( Ursus maritimus ) and other ice-dependent marine mammals under the U.S. Endangered Species Act (ESA). Methods are needed to evaluate the effects of climate change on population persistence to inform recovery planning for listed species. For polar bears, this includes understanding interactions between climate and secondary factors, such as subsistence harvest, which provide economic, nutritional, or cultural value to humans. We developed a matrix-based demographic model for polar bears that can be used for population viability analysis and to evaluate the effects of human-caused removals. This model includes density-dependence (the potential for a declining environmental carrying capacity), density-independent limitation, and sex- and age-specific harvest vulnerabilities. We estimated values of adult female survival (0.93–0.96), recruitment (number of yearling cubs per adult female; 0.1–0.3), and carrying capacity (>250 animals) that must be maintained for a hypothetical population to achieve a 90-percent probability of persistence over 100 years. We also developed a state-dependent management framework, based on harvest theory and the potential biological removal method, by linking the demographic model to simulated population assessments. This framework can be used to estimate the maximum sustainable rate of human-caused removals, including subsistence harvest, which maintains a population at its maximum net productivity level. The framework also can be used to calculate a recommended sustainable harvest rate, which generally is lower than the maximum sustainable rate and depends on management objectives, the precision and frequency of population data, and risk tolerance. The historical standard 4.5-percent harvest rate for polar bears, at a 2:1 male-to-female ratio, is reasonable under many biological and management conditions, although lower or higher rates may be appropriate in some cases. Our modeling results suggest that harvest of polar bears is unlikely to accelerate population declines that result from declining carrying capacity caused by sea-ice loss, provided that several conditions are met: (1) the sustainable harvest rate reflects the population’s intrinsic growth rate, and the corresponding harvest level is obtained by applying this rate to an estimate of population size; (2) the sustainable harvest rate reflects the quality of population data (e.g., lower harvest when data are poor); and (3) the level of human-caused removals can be adjusted. Finally, our results suggest that stopgap measures (e.g., further reduction or cessation of harvest when the population size is less than a critical threshold) may be necessary to minimize the incremental risk associated with harvest, if environmental conditions are deteriorating rapidly. We suggest that the demographic model and approaches presented here can serve as a template for conservation planning for polar bears and other species facing similar challenges.

Open-File Report↗
USGS1991

H4IIE rat hepatoma cell bioassay-derived 2,3,7,8-tetrachlorodibenzo-p-dioxin equivalents in colonial fish-eating waterbird eggs from the Great Lakes

Fish-eating waterbirds from the Great Lakes of North America have shown symptoms of poisoning similar to those observed in laboratory exposures of various avian species to planar halogenated hydrocarbons (PHHs). PHHs, include among others, polychlorinated biphenyls (PCBs), polychlorinated dibenzo- p -dioxins (PCDDs), and polychlorinated dibenzofurans (PCDFs) and have been implicated in some of the reproductive problems of Great Lakes waterbirds. The objectives of this study were to assess the overall potencies of PCB-containing extracts from colonial water-bird eggs taken from the Great Lakes and to compare the potencies with the location and spatial distribution of the colonies. The potencies of the extracts were assessed by their ability to induce cytochrome P450IA1-associated ethoxyresorufin O-deethylase (EROD) activity in H4IIE rat hepatoma cells as compared to the standard, 2,3,7,8-tetrachlorodibenzo- p -dioxin (TCDD). The H4IIE bioassay-derived TCDD-equivalents (TCCD-EQs) in the waterbird eggs concur with residue analyses and biological data from other studies. The greatest concentrations of TCDD-EQs were found in waterbird eggs from historically polluted, industrialized or urbanized areas in which the reproductive impairment of colonial waterbirds was most severe. However, significant concentrations of TCDD-EQs were detected at all sites tested; with a range of 49 to 415 pg TCDD-EQ/g egg, uncorrected for extraction efficiencies. The H4IIE bioassay proved to be a useful biomonitoring tool to assess the overall potency of complex PHH mixtures in environmental samples.

Beaver Island Group, Green Bay, Lake Erie, Lake Hu↗
USGS2003

Pathogenic human viruses in coastal waters

This review addresses both historical and recent investigations into viral contamination of marine waters. With the relatively recent emergence of molecular biology-based assays, a number of investigations have shown that pathogenic viruses are prevalent in marine waters being impacted by sewage. Research has shown that this group of fecal-oral viral pathogens (enteroviruses, hepatitis A viruses, Norwalk viruses, reoviruses, adenoviruses, rotaviruses, etc.) can cause a broad range of asymptomatic to severe gastrointestinal, respiratory, and eye, nose, ear, and skin infections in people exposed through recreational use of the water. The viruses and the nucleic acid signature survive for an extended period in the marine environment. One of the primary concerns of public health officials is the relationship between the presence of pathogens and the recreational risk to human health in polluted marine environments. While a number of studies have attempted to address this issue, the relationship is still poorly understood. A contributing factor to our lack of progress in the field has been the lack of sensitive methods to detect the broad range of both bacterial and viral pathogens. The application of new and advanced molecular methods will continue to contribute to our current state of knowledge in this emerging and

Clinical Microbiology Reviews↗
USGS2016

Global assessment of schistosomiasis control over the past century shows targeting the snail intermediate host works best

Background Despite control efforts, human schistosomiasis remains prevalent throughout Africa, Asia, and South America. The global schistosomiasis burden has changed little since the new anthelmintic drug, praziquantel, promised widespread control. Methodology We evaluated large-scale schistosomiasis control attempts over the past century and across the globe by identifying factors that predict control program success: snail control (e.g., molluscicides or biological control), mass drug administrations (MDA) with praziquantel, or a combined strategy using both. For data, we compiled historical information on control tactics and their quantitative outcomes for all 83 countries and territories in which: (i) schistosomiasis was allegedly endemic during the 20 th century, and (ii) schistosomiasis remains endemic, or (iii) schistosomiasis has been "eliminated," or is "no longer endemic," or transmission has been interrupted. Principal Findings Widespread snail control reduced prevalence by 92 ± 5% (N = 19) vs. 37 ± 7% (N = 29) for programs using little or no snail control. In addition, ecological, economic, and political factors contributed to schistosomiasis elimination. For instance, snail control was most common and widespread in wealthier countries and when control began earlier in the 20 th century. Conclusions/Significance Snail control has been the most effective way to reduce schistosomiasis prevalence. Despite evidence that snail control leads to long-term disease reduction and elimination, most current schistosomiasis control efforts emphasize MDA using praziquantel over snail control. Combining drug-based control programs with affordable snail control seems the best strategy for eliminating schistosomiasis.

PLoS Neglected Tropical Diseases↗
USGS2007

Initial Everglades Depth Estimation Network (EDEN) digital elevation model research and development

The Everglades Depth Estimation Network (EDEN) offers a consistent and documented dataset that can be used to guide large-scale field operations, to integrate hydrologic and ecological responses, and to support biological and ecological assessments that measure ecosystem responses to the Comprehensive Everglades Restoration Plan (Telis, 2006). To produce historic and near-real time maps of water depths, the EDEN requires a system-wide digital elevation model (DEM) of the ground surface. Accurate Everglades wetland ground surface elevation data were non-existent before the U.S. Geological Survey (USGS) undertook the collection of highly accurate surface elevations at the regional scale. These form the foundation for EDEN DEM development. This development process is iterative as additional high accuracy elevation data (HAED) are collected, water surfacing algorithms improve, and additional ground-based ancillary data become available. Models are tested using withheld HAED and independently measured water depth data, and by using DEM data in EDEN adaptive management applications. Here the collection of HAED is briefly described before the approach to DEM development and the current EDEN DEM are detailed. Finally future research directions for continued model development, testing, and refinement are provided.

Florida↗
USGS2014

Water-quality and biological conditions in selected tributaries of the Lower Boise River, southwestern Idaho, water years 2009-12

Water-quality conditions were studied in selected tributaries of the lower Boise River during water years 2009–12, including Fivemile and Tenmile Creeks in 2009, Indian Creek in 2010, and Mason Creek in 2011 and 2012. Biological samples, including periphyton biomass and chlorophyll-a, benthic macroinvertebrates, and fish were collected in Mason Creek in October 2011. Synoptic water-quality sampling events were timed to coincide with the beginning and middle of the irrigation season as well as the non-irrigation season, and showed that land uses and irrigation practices affect water quality in the selected tributaries. Large increases in nutrient and sediment concentrations and loads occurred over relatively short stream reaches and affected nutrient and sediment concentrations downstream of those reaches. Escherichia coli (E. coli) values increased in study reaches adjacent to pastured lands or wastewater treatment plants, but increased E. coli values at upstream locations did not necessarily affect E. coli values at downstream locations. A spatial loading analysis identified source areas for nutrients, sediment, and E. coli , and might be useful in selecting locations for water-quality improvement projects. Effluent from wastewater treatment plants increased nutrient loads in specific reaches in Fivemile and Indian Creeks. Increased suspended-sediment loads were associated with increased discharge from irrigation returns in each of the studied tributaries. Samples collected during or shortly after storms showed that surface runoff, particularly during the winter, may be an important source of nutrients in tributary watersheds with substantial agricultural land use. Concentrations of total phosphorus, suspended sediment, and E. coli exceeded regulatory water-quality targets or trigger levels at one or more monitoring sites in each tributary studied, and exceedences occurred during irrigation season more often than during non-irrigation season. As with water-quality sampling results, bottom-sediment samples analyzed for contaminants of emerging concern indicated that adjacent land uses can affect in-stream conditions. Contaminants of emerging concern were detected in four categories: urban compounds, industrial compounds, fecal steroids, and personal care products. Compounds in one or more of the four contaminant categories were detected at higher concentrations in upstream sites than in downstream sites in the tributaries and in the lower Boise River. High concentrations of compounds in upstream locations indicated that adjacent land use might be an important factor in contributing contaminants of emerging concern to the lower Boise River watershed. Expanded monitoring at Mason Creek near the mouth included a streamgage, a continuous water-quality monitor, and monthly water-quality sample collection. Data collected during expanded monitoring efforts at Mason Creek near the mouth provided information to develop and compare water-quality models. Regression models were developed using turbidity, discharge, and seasonality as surrogates to estimate concentrations of water-quality constituents. Daily streamflow also was used in a load model to estimate daily loads of water-quality constituents. Surrogate regression models may be useful for long-term monitoring and generally performed better than other models to estimate concentrations and loads of total phosphorus, total nitrogen, and suspended sediment in Mason Creek. Biological sampling results from Mason Creek showed low periphyton biomass and chlorophyll-a concentrations compared to those historically measured in the Boise River near Parma, Idaho, during October and November. The most abundant invertebrate found in Mason Creek was the highly tolerant and invasive New Zealand mudsnail ( Potamopyrgus antipodarum ). The presence of small rainbow trout (90 millimeters) may indicate salmonid spawning in Mason Creek. The rangeland-fish-index score of 58 for Mason Creek is comparable to rangeland-fish-index scores calculated for the Boise River near Middleton, indicating intermediate biotic condition.

Idaho↗
USGS2017

Microhabitat and biology of Sphaerium striatinum in a central New York stream

In many lotic systems, drastic declines in freshwater bivalve populations, including fingernail clams (Sphaeriidae), have created concerns about biodiversity and future ecosystem services. We examined the local occurrence of the historically common fingernail clam, Sphaerium striatinum , in a central New York stream. We sampled the density of sphaeriids and measured the associated habitat variables (substrate, depth, water flow) to test within-stream multivariate benthic microhabitat association. Size distribution, density, and diel feeding periodicity were measured as focal aspects of fingernail clam biology and ecology. S. striatinum tended to be found in microhabitats that had harder substrates and faster flow. The Labrador Creek fingernail clam local population had positive indicators (size distribution, density). There was significant diel periodicity in feeding behavior. The clams fed most actively during the 0400–0800 h periods. This kind of behavioral periodicity can indicate a significant ecological interaction between predators and bivalve prey. Increased understanding of the behavioral ecology of small native freshwater bivalves in an unimpacted headwater stream is a fundamental building block for development of overall ecological conservation goals for freshwater bivalves and their lotic habitats.

New York↗
USGS2021

Investigating the morphological and genetic divergence of arctic char (Salvelinus alpinus) populations in lakes of arctic Alaska

Polymorphism facilitates coexistence of divergent morphs (e.g., phenotypes) of the same species by minimizing intraspecific competition, especially when resources are limiting. Arctic char ( Salvelinus sp.) are a Holarctic fish often forming morphologically, and sometimes genetically, divergent morphs. In this study, we assessed the morphological and genetic diversity and divergence of 263 individuals from seven populations of arctic char with varying length-frequency distributions across two distinct groups of lakes in northern Alaska. Despite close geographic proximity, each lake group occurs on landscapes with different glacial ages and surface water connectivity, and thus was likely colonized by fishes at different times. Across lakes, a continuum of physical (e.g., lake area, maximum depth) and biological characteristics (e.g., primary productivity, fish density) exists, likely contributing to characteristics of present-day char populations. Although some lakes exhibit bimodal size distributions, using model-based clustering of morphometric traits corrected for allometry, we did not detect morphological differences within and across char populations. Genomic analyses using 15,934 SNPs obtained from genotyping by sequencing demonstrated differences among lake groups related to historical biogeography, but within lake groups and within individual lakes, genetic differentiation was not related to total body length. We used PERMANOVA to identify environmental and biological factors related to observed char size structure. Significant predictors included water transparency (i.e., a primary productivity proxy), char density (fish·ha -1 ), and lake group. Larger char occurred in lakes with greater primary production and lower char densities, suggesting less intraspecific competition and resource limitation. Thus, char populations in more productive and connected lakes may prove more stable to environmental changes, relative to food-limited and closed lakes, if lake productivity increases concomitantly. Our findings provide some of the first descriptions of genomic characteristics of char populations in arctic Alaska, and offer important consideration for the persistence of these populations for subsistence and conservation.

Alaska↗
USGS2009

Coastal Circulation and Sediment Dynamics in War-in-the-Pacific National Historical Park, Guam; measurements of waves, currents, temperature, salinity, and turbidity, June 2007-January 2008

Flow in and around coral reefs affects a number of physical, chemical and biologic processes that influence the health and sustainability of coral reef ecosystems. These range from the residence time of sediment and contaminants to nutrient uptake and larval retention and dispersal. As currents approach a coast they diverge to flow around reef structures, causing high horizontal and vertical shear. This can result in either the rapid advection of material in localized jets, or the retention of material in eddies that form in the lee of bathymetric features. The high complexity and diversity both within and between reefs, in conjunction with past technical restrictions, has limited our understanding of the nature of flow and the resulting flux of physical, chemical, and biologic material in these fragile ecosystems. Sediment, nutrients, and other pollutants from a variety of land-based activities adversely impact many coral reef ecosystems in the U.S. and around the world. These pollutants are transported in surface water runoff, groundwater seepage, and atmospheric fallout into coastal waters, and there is compelling evidence that the sources have increased globally as a result of human-induced changes to watersheds. In Guam, and elsewhere on U.S. high islands in the Pacific and Caribbean, significant changes in the drainage basins due to agriculture, feral grazing, fires, and urbanization have in turn altered the character and volume of land-based pollution released to coral reefs. Terrigenous sediment run-off (and the associated nutrients and contaminants often absorbed to it) and deposition on coral reefs are recognized to potentially have significant impact on coral health by blocking light and inhibiting photosynthesis, directly smothering and abrading coral, and triggering increases in macro algae. Studies that combine information on watershed, surface water- and groundwater-flow, transport and fate of sediment and other pollutants in the reef environment, and their impact on reef health and ecology are essential for effective reef management. Two of the main anthropogenic activities along west-central Guam's coastline that may impact the region's coral reef ecosystems include pollution and coastal land use/development, as discussed in the review by Porter and others (2005). The pollution threats include point-sources, such as municipal wastewater (Northern District, Hagatna, Naval Station Guam, and Agat-Santa Rita Waster Water Treatment Plants), cooling water (Tanguisson Steam and Cabras Power Plants), and numerous storm water, ballast water, and tank bottom draw outfalls; nonpoint sources include septic systems, urban runoff, illegal dumping, and groundwater discharges. Poor land-use practices include development without the use of runoff management measures, increased areal extent of impervious surfaces and decreased extent of vegetative barriers, and recreational off-road vehicle use. Furthermore, feral ungulates and illegal wildfires remove protective vegetative cover and generally result in increased soil erosion. While anthropogenic point-sources have been reduced in many areas due to better management practices, nonpoint sources have either stayed constant or increased. Between 1975 and 1999, it is estimated that Guam lost more than a quarter of its tree cover, and more than 750 wildfires each year have resulted in a greater proportion of badlands and other erosion-prone land surfaces with high erosion rates (Forestry and Soil Resources Division, 1999). Approximately 1.8 square kilometers (km2) of Asan Bay, west-central Guam, lies within the National Park Service's (NPS) War-in-the-Pacific National Historical Park's (WAPA) Asan Unit; the bay is the sink for material coming out of the Asan watershed. Anthropogenic modifications of the watersheds adjacent to Asan Bay, which include intentionally-set wildfires, construction, and agriculture (Minton, 2005), are believed to have increased over the past 25

Open-File Report↗
USGS2026

Patterns of recent brook trout invasion in bull trout streams in relation to habitat, source connectivity, biotic resistance, and disturbance

Knowledge of which habitats are at risk of invasion by nonnative species is essential to conservation, but a changing climate often complicates assessments of where future invasions may occur. Nonnative brook trout Salvelinus fontinalis threaten cold-adapted native salmonids throughout western North America, and the extent of future invasions in coldwater streams is recognized as an area of uncertainty with important consequences. We addressed this uncertainty using spatial-stream-network (SSN) modeling to develop a species distribution model (SDM) for brook trout in Idaho, creating high-resolution prediction maps of suitable (i.e., invadable) habitat under baseline (1990–2015) and future (2080s) climate scenarios, and querying predictions within natal bull trout S. confluentus habitat patches (stream–subwatershed scale) for each scenario. Results indicated that brook trout will experience a net loss of suitable habitat in Idaho, but a large increase of suitable habitat in cold streams. The total proportion of bull trout habitat invadable by brook trout increased from 0.33 during the baseline scenario to 0.44 during the future scenario—a result of upstream expansions of brook trout habitat that were partially offset by contractions in bull trout habitat. Changes in the proportion of invadable habitat varied widely among bull trout patches. Between scenarios, the largest increases in suitable habitat occurred in small, low-gradient, unconfined streams with mean August water temperatures of 7–9 °C during the baseline period. A relatively small proportion of patches contained the majority of invadable habitat in both scenarios, particularly patches in “U-shaped” glacial valleys. A changing climate will broadly increase the threat that brook trout pose to bull trout, but the degree of change experienced by individual populations will vary with local context. The high-resolution prediction maps created by our SSN model will help conservation planners identify and prioritize control efforts on the small proportion of brook trout populations that most threaten bull trout.

Idaho↗
USGS2017

Seven recommendations to make your invasive alien species data more useful

Science-based strategies to tackle biological invasions depend on recent, accurate, well-documented, standardized and openly accessible information on alien species. Currently and historically, biodiversity data are scattered in numerous disconnected data silos that lack interoperability. The situation is no different for alien species data, and this obstructs efficient retrieval, combination, and use of these kinds of information for research and policy-making. Standardization and interoperability are particularly important as many alien species related research and policy activities require pooling data. We describe seven ways that data on alien species can be made more accessible and useful, based on the results of a European Cooperation in Science and Technology (COST) workshop: (1) Create data management plans; (2) Increase interoperability of information sources; (3) Document data through metadata; (4) Format data using existing standards; (5) Adopt controlled vocabularies; (6) Increase data availability; and (7) Ensure long-term data preservation. We identify four properties specific and integral to alien species data (species status, introduction pathway, degree of establishment, and impact mechanism) that are either missing from existing data standards or lack a recommended controlled vocabulary. Improved access to accurate, real-time and historical data will repay the long-term investment in data management infrastructure, by providing more accurate, timely and realistic assessments and analyses. If we improve core biodiversity data standards by developing their relevance to alien species, it will allow the automation of common activities regarding data processing in support of environmental policy. Furthermore, we call for considerable effort to maintain, update, standardize, archive, and aggregate datasets, to ensure proper valorization of alien species data and information before they become obsolete or lost.

Frontiers in Applied Mathematics and Statistics↗
USGS2020

Seasonality of biological and physical systems as indicators of climatic variation and change

Evidence-based responses to climate change by society require operational and sustained information including biophysical indicator systems that provide up-to-date measures of trends and patterns against historical baselines. Two key components linking anthropogenic climate change to impacts on socio-ecological systems are the periodic inter- and intra-annual variations in physical climate systems (seasonality) and in plant and animal life cycles (phenology). We describe a set of national indicators that reflect sub-seasonal to seasonal drivers and responses of terrestrial physical and biological systems to climate change and variability at the national scale. Proposed indicators and metrics include seasonality of surface climate conditions (e.g., frost and freeze dates and durations), seasonality of freeze/thaw in freshwater systems (e.g., timing of stream runoff and durations of lake/river ice), seasonality in ecosystem disturbances (e.g., wildfire season timing and duration), seasonality in vegetated land surfaces (e.g., green-up and brown-down of landscapes), and seasonality of organismal life-history stages (e.g., timings of bird migration). Recommended indicators have strong linkages to variable and changing climates, include abiotic and biotic responses and feedback mechanisms, and are sufficiently simple to facilitate communication to broad audiences and stakeholders interested in understanding and adapting to climate change.

Climatic Change↗
USGS2011

Coastal and lower Elwha River, Washington, prior to dam removal--history, status, and defining characteristics: Chapter 1 in Coastal habitats of the Elwha River, Washington--biological and physical patterns and processes prior to dam removal

Characterizing the physical and biological characteristics of the lower Elwha River, its estuary, and adjacent nearshore habitats prior to dam removal is essential to monitor changes to these areas during and following the historic dam-removal project set to begin in September 2011. Based on the size of the two hydroelectric projects and the amount of sediment that will be released, the Elwha River in Washington State will be home to the largest river restoration through dam removal attempted in the United States. Built in 1912 and 1927, respectively, the Elwha and Glines Canyon Dams have altered key physical and biological characteristics of the Elwha River. Once abundant salmon populations, consisting of all five species of Pacific salmon, are restricted to the lower 7.8 river kilometers downstream of Elwha Dam and are currently in low numbers. Dam removal will reopen access to more than 140 km of mainstem, flood plain, and tributary habitat, most of which is protected within Olympic National Park. The high capture rate of river-borne sediments by the two reservoirs has changed the geomorphology of the riverbed downstream of the dams. Mobilization and downstream transport of these accumulated reservoir sediments during and following dam removal will significantly change downstream river reaches, the estuary complex, and the nearshore environment. To introduce the more detailed studies that follow in this report, we summarize many of the key aspects of the Elwha River ecosystem including a regional and historical context for this unprecedented project.

Washington↗
USGS2011

Sedimentation and occurrence and trends of selected nutrients, other chemical constituents, and cyanobacteria in bottom sediment, Clinton Lake, northeast Kansas, 1977-2009

A combination of available bathymetric-survey information and bottom-sediment coring was used to investigate sedimentation and the occurrence of selected nutrients (total nitrogen and total phosphorus), organic and total carbon, 25 trace elements, cyanobacterial akinetes, and the radionuclide cesium-137 in the bottom sediment of Clinton Lake, northeast Kansas. The total estimated volume and mass of bottom sediment deposited from 1977 through 2009 in the conservation (multi-purpose) pool of the reservoir was 438 million cubic feet and 18 billion pounds, respectively. The estimated sediment volume occupied about 8 percent of the conservation-pool, water-storage capacity of the reservoir. Sedimentation in the conservation pool has occurred about 70 percent faster than originally projected at the time the reservoir was completed. Water-storage capacity in the conservation pool has been lost to sedimentation at a rate of about 0.25 percent annually. Mean annual net sediment deposition since 1977 in the conservation pool of the reservoir was estimated to be 563 million pounds per year. Mean annual net sediment yield from the Clinton Lake Basin was estimated to be 1.5 million pounds per square mile per year. Typically, the bottom sediment sampled in Clinton Lake was at least 99 percent silt and clay. The mean annual net loads of total nitrogen and total phosphorus deposited in the bottom sediment of Clinton Lake were estimated to be 1.29 million pounds per year and 556,000 pounds per year, respectively. The estimated mean annual net yields of total nitrogen and total phosphorus from the Clinton Lake Basin were 3,510 pounds per square mile per year and 1,510 pounds per square mile per year, respectively. Throughout the history of Clinton Lake, total nitrogen concentrations in the deposited sediment generally were uniform and indicated consistent inputs to the reservoir over time. Likewise, total phosphorus concentrations in the deposited sediment generally were uniform. Although, for two of three coring sites, a possible positive trend in phosphorus deposition was indicated. The Wakarusa River possibly was a larger contributor of nitrogen and phosphorus to Clinton Lake than was Rock Creek. As a principal limiting factor for primary production in most freshwater environments, phosphorus is of particular importance because increased inputs can contribute to accelerated reservoir eutrophication and the production of algal toxins and taste-and-odor compounds. Trace-element concentrations in the bottom sediment of Clinton Lake generally were uniform over time. As is typical for eastern Kansas reservoirs, arsenic, chromium, and nickel concentrations typically exceeded the threshold-effects guidelines, which represent the concentrations above which toxic biological effects occasionally occur. Zinc concentrations frequently exceeded the threshold-effects guideline. Trace-element concentrations did not exceed the probable-effects guidelines (available for eight trace elements), which represent the concentrations above which toxic biological effects usually or frequently occur. Cyanobacterial akinetes (cyanobacteria resting stage) in the bottom sediment of Clinton Lake, combined with historical water-quality data on chlorophyll-a and total phosphorus concentrations, indicated that the reservoir likely has been eutrophic throughout most of its history. A statistically significant increase in cyanobacterial akinetes in the bottom sediment indicated that Clinton Lake may have become more eutrophic over the life of the reservoir. The increase in cyanobacterial akinetes may, in part, be related to a possible increase in total phosphorus concentrations.

Scientific Investigations Report↗
USGS2009

Aquatic ecosystems in Central Colorado are influenced by mineral forming processes and historical mining

Stream water and sediment toxicity to aquatic insects were quantified from central Colorado catchments to distinguish the effect of geologic processes which result in high background metals concentrations from historical mining. Our sampling design targeted small catchments underlain by rocks of a single lithology, which allowed the development of biological and geochemical baselines without the complication of multiple rock types exposed in the catchment. By accounting for geologic sources of metals to the environment, we were able to distinguish between the environmental effects caused by mining and the weathering of different mineralized areas. Elevated metal concentrations in water and sediment were not restricted to mined catchments. Impairment of aquatic communities also occurred in unmined catchments influenced by hydrothermal alteration. Hydrothermal alteration style, deposit type, and mining were important determinants of water and sediment quality and aquatic community structure. Weathering of unmined porphyry Cu-Mo occurrences resulted in water (median toxic unit (TU) = 108) and sediment quality (TU = 1.9) that exceeded concentrations thought to be safe for aquatic ecosystems (TU = 1). Metalsensitive aquatic insects were virtually absent from streams draining catchments with porphyry Cu-Mo occurrences (1.1 individuals/0.1 m2 ). However, water and sediment quality (TU = 0.1, 0.5 water and sediment, respectively) and presence of metalsensitive aquatic insects (204 individuals/0.1 m2 ) for unmined polymetallic vein occurrences were indistinguishable from that for unmined and unaltered streams (TU = 0.1, 0.5 water and sediment, respectively; 201 individuals/0.1 m2 ). In catchments with mined quartz-sericite-pyrite altered polymetallic vein deposits, water (TU = 8.4) and sediment quality (TU = 3.1) were degraded and more toxic to aquatic insects (36 individuals/0.1 m2 ) than water (TU = 0.4) and sediment quality (TU = 1.7) from mined propylitically altered polymetallic vein deposits. The sampling approach taken in this study distinguishes the effects of different mineral deposits on ecosystems and can be used to more accurately quantify the effect of mining on the environment.

Conference Paper↗