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Transboundary fisheries science: Meeting the challenges of inland fisheries management in the 21st century

Managing inland fisheries in the 21st century presents several obstacles, including the need to view fisheries from multiple spatial and temporal scales, which usually involves populations and resources spanning sociopolitical boundaries. Though collaboration is not new to fisheries science, inland aquatic systems have historically been managed at local scales and present different challenges than in marine or large freshwater systems like the Laurentian Great Lakes. Therefore, we outline a flexible strategy that highlights organization, cooperation, analytics, and implementation as building blocks toward effectively addressing transboundary fisheries issues. Additionally, we discuss the use of Bayesian hierarchical models (within the analytical stage), due to their flexibility in dealing with the variability present in data from multiple scales. With growing recognition of both ecological drivers that span spatial and temporal scales and the subsequent need for collaboration to effectively manage heterogeneous resources, we expect implementation of transboundary approaches to become increasingly critical for effective inland fisheries management.

Fisheries

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2021

Greater sage-grouse ( Centrocercus urophasianus ) are at the center of state and national land use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide current management and conservation plans aimed at benefitting sage-grouse populations. This analysis relied on previously published population trend modeling methodology from Coates and others (2021) and includes the addition of three analytical updates: (1) identification of population nadirs (lowest points within cycles) at the lek (breeding ground) and neighborhood cluster (group of leks) spatial scales, (2) truncation of prior distributions on rate of change in apparent abundance values to more realistic boundaries for leks with missing data, and (3) addition of 2 years of population lek count data (2020 and 2021) to the current dataset (1953–2021). Bayesian state-space models estimated 2.9 percent average annual decline in sage-grouse populations across their geographical range, which varied among subpopulations at the largest scale of analysis, termed climate clusters (2.2–4.6). Cumulative declines were 42.5, 65.6, and 80.1 percent range-wide across short (19 years), medium (35 years), and long (55 years) temporal periods, respectively. These results indicate that range-wide populations continued to decline during 2020 and 2021, although two climate clusters (eastern area and Bi-State area) have shown growth in population abundance in recent years, indicating they have surpassed a recent population abundance nadir.

Data Report

Application of decision science to resilience management in Jamaica Bay

This book highlights the growing interest in management interventions designed to enhance the resilience of the Jamaica Bay socio-ecological system. Effective management, whether the focus is on managing biological processes or human behavior or (most likely) both, requires decision makers to anticipate how the managed system will respond to interventions (i.e., via predictions or projections). In systems characterized by many interacting components and high uncertainty, making probabilistic predictions is often difficult and requires careful thinking not only about system dynamics, but also about how management objectives are specified and the analytic method used to select the preferred action(s). Developing a clear statement of the problem(s) and articulation of management objectives is often best achieved by including input from managers, scientists and other stakeholders affected by the decision through a process of joint problem framing (Marcot and others 2012; Keeney and others 1990). Using a deliberate, coherent and transparent framework for deciding among management alternatives to best meet these objectives then ensures a greater likelihood for successful intervention. Decision science provides the theoretical and practical basis for developing this framework and applying decision analysis methods for making complex decisions under uncertainty and risk.

Book chapter

Aquatic concentrations of chemical analytes compared to ecotoxicity estimates

We describe screening level estimates of potential aquatic toxicity posed by 227 chemical analytes that were measured in 25 ambient water samples collected as part of a joint USGS/USEPA drinking water plant study. Measured concentrations were compared to biological effect concentration (EC) estimates, including USEPA aquatic life criteria, effective plasma concentrations of pharmaceuticals, published toxicity data summarized in the USEPA ECOTOX database, and chemical structure-based predictions. Potential dietary exposures were estimated using a generic 3-tiered food web accumulation scenario. For many analytes, few or no measured effect data were found, and for some analytes, reporting limits exceeded EC estimates, limiting the scope of conclusions. Results suggest occasional occurrence above ECs for copper, aluminum, strontium, lead, uranium, and nitrate. Sparse effect data for manganese, antimony, and vanadium suggest that these analytes may occur above ECs, but additional effect data would be desirable to corroborate EC estimates. These conclusions were not affected by bioaccumulation estimates. No organic analyte concentrations were found to exceed EC estimates, but ten analytes had concentrations in excess of 1/10th of their respective EC: triclocarban, norverapamil, progesterone, atrazine, metolachlor, triclosan, para-nonylphenol, ibuprofen, venlafaxine, and amitriptyline, suggesting more detailed characterization of these analytes.

Science of the Total Environment

Determination of Fe(III) and Fe(II) in oxalate extracts of sediment

A method was developed to determine the concentrations of oxalate-extractable Fe(III) and Fe(II) in sediments. Sediment was extracted in acid ammonium oxalate under N 2 . Iron(II) in the extract was determined with ferrozine. Iron(III) in the extract was reduced with hydroxylamine-hydrochloride, and total Fe in the extract was determined with ferrozine. Oxalate-extractable Fe(III) was calculated as the difference between Fe(II) and total Fe in the extract. Iron(II) was not oxidized, and Fe(III) was not reduced during the extraction. For an accurate estimate of oxalate-extractable Fe(III), fresh samples had to be analyzed, because air-drying or freeze-drying the samples oxidized Fe(II) to oxalate-extractable Fe(III). With a minimal increase in analytical effort, the method yields far more information on Fe geochemistry than the standard aerobic oxalate extraction method.

Soil Science Society of America Journal

The Partners in Flight handbook on species assessment Version 2017

Partners in Flight (PIF) is a cooperative venture of federal, state, provincial, and territorial agencies, industry, non-governmental organizations, researchers, and many others whose common goal is the conservation of North American birds (www.partnersinflight.org). While PIF has focused primarily on landbirds, it works in conjunction with other bird partners to promote coordinated conservation of all birds. PIF follows an iterative, adaptive planning approach that develops a sound scientific basis for decision-making and a logical process for setting, implementing, and evaluating conservation objectives (Pashley et al. 2000, Rich et al. 2004, Berlanga et al. 2010). The steps include: 1. Assessing conservation vulnerability of all bird species; 2. Identifying species most in need of conservation attention at continental and regional scales; 3. Setting of numerical population objectives for species of continental and regional importance; 4. Identifying conservation needs and recommended actions for species and habitats of importance; 5. Implementing strategies for meeting species and habitat objectives at continental and regional scales; 6. Evaluating success, making revisions, and setting new objectives for the future. The 2017 PIF Handbook on Species Assessment (2017 PIF Handbook) documents assessment rules and scores used in the Partners in Flight Landbird Conservation Plan: 2016 Revision for Canada and Continental United States (Rosenberg et al. 2016) and The State of North America’s Birds 2016 (NABCI 2016). It updates previous versions of the handbook (Panjabi et al. 2012, 2005, 2001) developed to accompany other PIF applications including Saving Our Shared Birds: Partners in Flight Tri-National Vision for Landbird Conservation (Berlanga et al. 2010) and the North American Landbird Conservation Plan (Rich et al. 2004). All current and past scores, data sources, and other related information are contained in databases hosted by the Bird Conservancy of the Rockies. Scores can be viewed online and downloaded as excel files, including archived versions (http://pif.birdconservancy.org/acad). The current accompanying Avian Conservation Assessment Database (ACAD) holds assessment scores and data for all 1585 native and 18 well-established non-native bird species found in mainland North America south to Panama plus adjacent islands and oceans. The taxonomy follows the American Ornithological Society’s 7th Edition Checklist of North and Middle American Birds, including updates though the 57th supplement, published in 2016 (http://checklist.aou.org/). The ACAD builds on archived PIF databases that hosted only data on the 882 landbirds native to Canada, USA and Mexico. This handbook is presented in two principal sections. Part I details the factors and scoring used by PIF to assess the vulnerability of species at continental and regional scales (i.e. step 1 of the planning approach above). Each assessment factor is based on biological criteria that evaluate distinct components of vulnerability throughout the life cycle of each species across its range. Part II describes the process of how the factors and the corresponding scores can be combined to highlight conservation needs (i.e. step 2 of the planning approach above). Both the scores and the process have evolved over time (Hunter et al. 1992, Carter et al. 2000, Panjabi et al. 2001, 2005, 2012) and continue to be updated in response to external review (Beissinger et al. 2000), broad partner expertise, and the emergence of new data and analytical tools.

Report

Assessing contaminants of emerging concern in the Great Lakes Ecosystem: A decade of method development and practical application

Assessing the ecological risk of contaminants in the field typically involves consideration of a complex mixture of compounds which may or may not be detected via instrumental analyses. Further, there are insufficient data to predict the potential biological effects of many detected compounds, leading to their being characterized as contaminants of emerging concern (CECs). Over the past several years, advances in chemistry, toxicology, and bioinformatics have resulted in a variety of concepts and tools that can enhance the pragmatic assessment of the ecological risk of CECs. The present Focus article describes a 10+- year multiagency effort supported through the U.S. Great Lakes Restoration Initiative to assess the occurrence and implications of CECs in the North American Great Lakes. State-of-the-science methods and models were used to evaluate more than 700 sites in about approximately 200 tributaries across lakes Ontario, Erie, Huron, Michigan, and Superior, sometimes on multiple occasions. Studies featured measurement of up to 500 different target analytes in different environmental matrices, coupled with evaluation of biological effects in resident species, animals from in situ and laboratory exposures, and in vitro systems. Experimental taxa included birds, fish, and a variety of invertebrates, and measured endpoints ranged from molecular to apical responses. Data were integrated and evaluated using a diversity of curated knowledgebases and models with the goal of producing actionable insights for risk assessors and managers charged with evaluating and mitigating the effects of CECs in the Great Lakes. This overview is based on research and data captured in approximately about 90 peer-reviewed journal articles and reports, including approximately about 30 appearing in a virtual issue comprised of highlighted papers published in Environmental Toxicology and Chemistry or Integrated Environmental Assessment and Management . Environ Toxicol Chem 2023;42:2506–2518. © 2023 SETAC. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.

Environmental Toxicology and Chemistry

Agriculture-related trends in groundwater quality of the glacial deposits aquifer, central Wisconsin

Measuring and understanding trends in groundwater quality is necessary for determining whether changes in land-management practices have an effect on groundwater quality. This paper describes an approach that was used to measure and understand trends using data from two groundwater studies conducted in central Wisconsin as part of the USGS NAWQA program. One of the key components of this approach, determining the age of sampled groundwater, gave a temporal component to the snapshots of water quality that were obtained through synoptic-sampling efforts. This approach can be used at other locations where groundwater quality data are collected, groundwater age can be determined, and associated temporal data are available. Results of these studies indicate measured concentrations of nitrate and atrazine plus deethylatrazine were correlated to historical patterns of fertilizer and atrazine use. Concentrations of nitrate in groundwater have increased over time; concentrations of atrazine plus deethylatrazine increased and then decreased. Concentrations of nitrate also were correlated to screen depth below the water level and concentrations of dissolved O2; concentrations of atrazine plus deethylatrazine were correlated to dissolved O2 and annual precipitation. To measure trends in concentrations of atrazine plus deethylatrazine, the data, collected over a near-decadal period, were adjusted to account for changes in laboratory-reporting levels and analytical recoveries. Only after accounting for these changes was it apparent that the median concentrations of atrazine plus deethylatrazine decreased over the near-decadal interval between sampling efforts. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Conference Paper

Quality-assurance plan for the analysis of fluvial sediment by the U.S. Geological Survey Kentucky Water Science Center Sediment Laboratory

This report describes laboratory procedures used by the U.S. Geological Survey Kentucky Water Science Center Sediment Laboratory for the processing and analysis of fluvial-sediment samples for concentration of sand and finer material. The report details the processing of a sediment sample through the laboratory from receiving the sediment sample, through the analytical process, to compiling results of the requested analysis. Procedures for preserving sample integrity, calibrating and maintaining of laboratory and field instruments and equipment, analyzing samples, internal quality assurance and quality control, and validity of the sediment-analysis results also are described. The report includes a list of references cited and a glossary of sediment and quality-assurance terms.

Open-File Report

Quality-assurance plan for the analysis of fluvial sediment by the U.S. Geological Survey New Mexico Water Science Center Sediment Laboratory

This report describes laboratory procedures used by the U.S. Geological Survey New Mexico Water Science Center Sediment Laboratory for the processing and analysis of fluvial-sediment samples for concentration of sand and finer material. The report details the processing of a sediment sample through the laboratory from receiving the sediment sample, through the analytical process, to compiling results of the requested analysis. Procedures for preserving sample integrity, calibrating and maintaining of laboratory and field instruments and equipment used to analyze samples, internal quality assurance and quality control, and validity of the sediment-analysis results also are described. The report includes a list of references cited and a glossary of sediment and quality-assurance terms.

Open-File Report

The importance of quality control in validating concentrationsof contaminants of emerging concern in source and treateddrinking water samples

A national-scale survey of 247 contaminants of emerging concern (CECs), including organic and inorganic chemical compounds, andmicrobial contaminants, was conducted in source and treated drinkingwater samples from 25 treatment plants across the United States.Multiplemethodswere used to determine these CECs, including six analytical methods tomeasure 174 pharmaceuticals, personal care products, and pesticides. A three-component quality assurance/quality control (QA/QC) programwas designed for the subset of 174 CECswhich allowed us to assess and compare performances of themethods used. The three components included: 1) a common field QA/ QC protocol and sample design, 2) individual investigator-developed method-specific QA/QC protocols, and 3) a suite of 46method comparison analytes thatwere determined in two or more analytical methods. Overallmethod performance for the 174 organic chemical CECs was assessed by comparing spiked recoveries in reagent, source, and treated water over a two-year period. In addition to the 247 CECs reported in the larger drinking water study, another 48 pharmaceutical compoundsmeasured did not consistentlymeet predetermined quality standards. Methodologies that did not seem suitable for these analytes are overviewed. The need to exclude analytes based on method performance demonstrates the importance of additional QA/QC protocols.

Science of the Total Environment

Discrete sample introduction module for quantitative and isotopic analysis of methane and other gases by cavity ring-down spectroscopy

Carbon dioxide (CO 2 ) and methane (CH 4 ) are natural and anthropogenic products that play a central role in the global carbon cycle and regulating Earth’s climate. Applications utilizing laser absorption spectroscopy, which continuously measure concentrations and stable isotope ratios of these greenhouse gases, are routinely employed to measure the source and magnitude of atmospheric inputs. We developed a discrete sample introduction module (DSIM) to enable measurements of methane and CO 2 concentrations and δ 13 C values from limited volume (5–100 mL) gas samples when interfaced with a commercially available cavity ring-down spectroscopy (CRDS) analyzer. The analysis has a dynamic range that spans six orders of magnitude from 100% analyte to the lower limit of instrument detection (2 ppm). We demonstrate system performance for methane by comparing concentrations and δ 13 C results from the DSIM-CRDS system and traditional methods for a variety of sample types, including low concentration (nanomolar CH 4 ) seawater and high concentration (>90% CH 4 ) natural gas. The expansive concentration range of the field-portable DSIM-CRDS system can measure enhances analytical performance for investigating methane and CO 2 dynamics and, potentially, other gases measured by laser absorption spectroscopy.

Environmental Science & Technology

Response to comment on "Pharmaceuticals, hormones, and other organic wastewater contaminants in U.S. streams, 1999-2000: A national reconnaissance"

We thank Ericson et al. (1) for their careful review and thoughtful comments on the synthetic hormone data presented in our recent publication summarizing the results from the USGS nationwide reconnaissance for pharmaceuticals and other organic wastewater contaminants (2). Their efforts have helped raise the awareness of the difficulties in accurately measuring these compounds at the low concentrations that occur in the environment and reinforce the need for continued research in the area of analytical methods development for synthetic hormones

Environmental Science & Technology

United States Geological Survey Yearbook, fiscal year 1979

In March 1979, the U.S. Geological Survey celebrated its 100th year of service to the Nation and 10 decades of stewardship of the land and its resources. During this year, as in the previous 99, the Survey discharged its national trust by collecting, analyzing, and disseminating earth science information and by continuing its somewhat more recent responsibilities of supervising the development of energy and mineral resources on Federal lands. The basic mission of the Survey has changed over the years, and the scope of its activities and the power of analytic tools have also increased by several orders of magnitude from the early surveys of then "remote" western areas of the United States to surveying and mapping the mountains of the Moon and the polar caps of Mars and from the use of surveyor's transits, picks, the travelling chemistry kits to interpretation of Earth imagery. These representative advances illustrate important and continuing trends for at no previous time have our earth resources been so precious or our consciousness of their finiteness so acute. The Yearbook reports a broad range of the Survey's accomplishments during the past fiscal year and offers an overview of its future. Many of the topics touched on below will continue to be important resource issues in the coming decade.

Yearbook

Geostatistical estimation of the bottom altitude and thickness of the Mississippi River Valley alluvial aquifer

The Mississippi River Valley alluvial aquifer (MRVA) caps a shallow system of aquifers and confining units in the Mississippi Alluvial Plain (MAP) that extends across 45,000 square miles of the midwestern and southern United States from Illinois to Louisiana. Irrigation water from the MRVA is required to sustain extensive crop production, which has resulted in groundwater-level declines since the late 1920s equal to nearly half of its thickness and in reduced baseflow of streams. Increased groundwater withdrawal for irrigation is expected to continue and threatens complete and irreversible aquifer dewatering (depletion). The exact amount of dewatering in the MRVA is uncertain because its vertical extent is poorly defined and the effects of groundwater withdrawal on the aquifer are not well understood. To provide stakeholders and managers with information and tools that promote understanding of the hydrogeologic framework of the MAP extent and its role in water-resource management, the U.S. Geological Survey (USGS) Water Availability and Use Science Program has funded a 5-year effort to assess groundwater availability and project future sustainability of water resources. Part of this study involves mapping the bottom altitude and thickness of the aquifer by using compilations of hydrogeologic data and applications of geostatistical analytics. Results of this mapping effort, presented here, are intended to enhance characterization of the shallow hydrogeologic framework and direct future airborne, ground-based, and waterborne geophysical surveys. Data used in support of the findings presented in this report are available as a USGS data release ( https://doi.org/10.5066/P9D9XR5F ).

Scientific Investigations Map

Coastal ecosystem decision‐support GIS: Functions and methodology

To solve coastal resource and environmental issues and handle complex spatial data and information effectively and efficiently, a coastal ecosystem decision‐support geographic information system (GIS) is being developed at the Southern Science Center of the U.S. National Biological Service. With three subsystems, natural resource management, environmental impact assessment, and data and information handling, respectively, the multifunctional system is designed to provide decision makers with tools to integrate and organize various environmental data and information for analytical modeling, spatial query, and graphic visualization. The multiple integration approach was employed in this system's development based on a commercial GIS, which includes subsystems integration, environmental data integration, decision‐support functions integration, and analytical model integration.

Marine Geodesy

Management of ground water and evolving hydrogeologic studies in New Jersey : a heavily urbanized and industrialized state in the northeastern United States

New Jersey is the most densely populated and one of the most industrialized states in the United States. An abundance of freshwater and proximity to major northeastern metropolitan centers has facilitated this development. Pumpage of freshwater from all aquifers in the State in 1980 was 730 million gallons per day (2.76 million cubic meters per day). Management and efficient development of the ground-water resources of the State are the responsibility of the New Jersey Department of Environmental Protection. Laws have been enacted and updated by the State legislature to manage water allocation and to control the disposal of hazardous wastes. Present resource management is guided by the New Jersey Water-Supply Master Plan of 1981. Funding for management activities is partially derived from the sale of state-approved bonds. Effective planning and regional management require accurate and up-to-date hydrologic information and analyses. The U.S. Geological Survey, in cooperation with the New Jersey Geological Survey, is conducting three intensive ground-water studies involving the collection and interpretation of hydrologic data to meet the urgent water-management needs of New Jersey. These studies are part of a long-term cooperative program and are funded through the Water-Supply Bond Act of 1981. They began in 1983 and are scheduled to be completed in 1988. The project areas are situated in the New Jersey part of the Atlantic Coastal Plain in and near Atlantic City, Camden, and South River. They range in size from 400 to 1,200 mil (1,040 to 3,120 km2). The studies are designed to define the geology, hydrology, and geochemistry of the local ground-water systems. The results of these studies will enable the State to address more effectively major problems in these areas such as declining water levels, overpumping, saltwater intrusion, and ground-water contamination resulting from the improper disposal of hazardous wastes. Specific objectives of these studies by the U.S. Geological Survey are to (1) develop an accurate and up-to-date hydrogeologic data base, (2) design and implement a data-collection program and establish a computerized information management system, (3) refine the conceptualization of the ground-water flow system, and (4) define the geochemistry of the aquifer system by conducting a water-quality appraisal. The objectives are accomplished by standard hydrogeologic methods. Information concerning hydrogeologic framework, ground-water levels, water use, hydraulic characteristics, and water quality in the study areas is compiled from all available sources. Additional data needed are collected through well inventories, surface geophysical surveys, water-quality samplings, water-level measurements, and a well-drilling program. Interpretation of the flow system is based on the use of standard analytical techniques and digital flow modeling. Calibrated flow models will provide ground-water managers with a mechanism to develop and test regional water-supply strategies. Definition of the geochemistry of the aquifer system is accomplished through a variety of methods which depend on the problems and available data in the particular study area. The approach includes statistical analysis of water-quality data, reaction-path modeling, and determination of the movement of chemical constituents using analytical and numerical modeling techniques. A combined staff of 25 to 30 professionals and technicians from the New Jersey District office of the U.S. Geological Survey is committed to the three studies. The staff has specialists in geohydrology, numerical modeling, geochemistry, geophysics, and computer science. The findings of these studies will be published in data reports, interpretive reports, instructional manuals and journal articles.

New Jersey