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Hydrology, vegetation, and soils of riverine and tidal floodplain forests of the lower Suwannee River, Florida, and potential impacts of flow reductions

A study relating hydrologic conditions, soils, and vegetation of floodplain forests to river flow was conducted in the lower Suwannee River, Florida, from 1996 to 2000. The study was done by the U.S. Geological Survey in cooperation with the Suwannee River Water Management District to help determine the minimum flows and levels required for wetlands protection. The study area included forests within the 10-year floodplain of the Suwannee River from its confluence with the Santa Fe River to the tree line (lower limit of forests) near the Gulf of Mexico, and covered 18,600 hectares (ha) of forests, 75 percent of which were wetlands and 25 percent uplands. The floodplain was divided into three reaches, riverine, upper tidal, and lower tidal, based on changes in hydrology, vegetation, and soils with proximity to the coast. The Suwannee River is the second largest river in Florida in terms of average discharge. Median flow at the confluence of the Suwannee and Santa Fe Rivers is approximately 181 cubic meters per second (m3/s) or 6,480 cubic feet per second (ft3/s) (1933-99). At the upper end of the riverine reach, river stages are unaffected by tides and have a typical annual range of 4.1 meters (m). Tides affect river stages at low and medium flows in the upper tidal reach, and at all flows in the lower tidal reach. Median tidal range at the mouth of the Suwannee River is about 1 m. Salinity of river water in the lower tidal reach increases with decreasing flow and proximity to the Gulf of Mexico. Vertically averaged salinity in the river near the tree line is typically about 5 parts per thousand at medium flow. Land-surface elevation and topographic relief in the floodplain decrease with proximity to the coast. Elevations range from 4.1 to 7.3 m above sea level at the most upstream riverine transect and from 0.3 to 1.3 m above sea level on lower tidal transects. Surface soils in the riverine reach are predominantly mineral and dry soon after floods recede except in swamps. Surface soils in upper and lower tidal reaches are predominantly organic, saturated mucks. In the downstream part of the lower tidal reach, conductivities of surface soils are high enough (greater than 4 milli-mhos per centimeter) to exclude many tree species that are intolerant of salinity. Species richness of canopy and subcanopy plants in wetland forests in the lower Suwannee River is high compared to other river floodplains in North America. A total of 77 tree, shrub, and woody vine species were identified in the canopy and subcanopy of floodplain wetland forests (n = 8,376). Fourteen specific forest types were mapped using digitized aerial photographs, defined from vegetative sampling, and described in terms of plant species composition. For discussion purposes, some specific wetland types were combined, resulting in three general wetland forest types for each reach. Riverine high bottomland hardwoods have higher canopy species richness than all other forest types (40-42 species), with Quercus virginiana the most important canopy tree by basal area. The canopy composition of riverine low bottomland hardwoods is dominated by five species with Quercus laurifolia the most important by basal area. Riverine swamps occur in the lowest and wettest areas with Taxodium distichum the most important canopy species by basal area. Upper tidal bottomland hardwoods are differentiated from riverine forests by the presence of Sabal palmetto in the canopy. Upper tidal mixed forests and swamps are differentiated from riverine forests, in part, by the presence of Fraxinus profunda in the canopy. Nyssa aquatica, the most important canopy species by basal area in upper tidal swamps, is absent from most forests in the lower tidal reach where its distribution is probably restricted by salinity. Hydric hammocks, a wetland type that is rare outside of Florida, are found in the lower tidal reach and are flooded every 1-2 years by either storm surge or river floods. Lower tidal mixed forests and swamps have continuously saturated muck soils and are differentiated from upper tidal forests, in part, by the presence of Magnolia virginiana in the canopy. Lower tidal swamps have the highest density of canopy trees (about 1,200 trees per hectare) of all floodplain forest types, with Nyssa biflora the most important canopy species by basal area. Water use in the Suwannee River basin in Florida and Georgia is expected to increase over time because of anticipated growth and development in the region and adjacent areas. If increased water consumption reduced river flow, river stage would decrease and salinity would increase, resulting in a variety of impacts on forest composition, wetland biogeochemical processes, and fish and wildlife habitat. Forest composition in the floodplain is primarily determined by duration of inundation and saturation, depth and frequency of floods, and salinity. Long-term flow reductions would result in shallower flood depths, allowing drier and more tidal species to invade wetland forests of the riverine and upper tidal reaches. If flows were reduced 2.8-56 m3/s (100-2,000 ft3/s), an estimated 52-1,140 ha, respectively, would change to a drier forest type, and 36-788 ha, respectively, would change to a more tidal forest type. The greatest impacts would occur in swamps, where important swamp species such as Taxodium distichum and Nyssa aquatica could have increased competition not only from drier or more tidal species, but also from opportunistic bottomland hardwoods or invasive exotic species. Reduced flows could also result in a conversion of some wetland forests to uplands, increasing vulnerability to human disturbance, and decreasing tree basal area, species richness, and diversity of wildlife habitat. Salt-intolerant species would move upstream if flow reductions increased salinity in the lower tidal reach. If flows were reduced 2.8-56 m3/s (100-2,000 ft3/s), the area of forests along the tree line that would convert to marshes is estimated to be 72-618 ha, respectively. Loss of forests at the tree line would result in a loss of complex vertical structural diversity and woody micro-habitats that are used by many animals. These changes are already occurring due to sea level rise, but changes would occur more quickly if salinities increased as a result of flow reductions. The amount of inundated and saturated area in the floodplain forest of the riverine reach would decrease if flows were reduced. The greatest impacts would result from flow reductions that occurred at low flows, when inundated and saturated areas in the floodplain are limited. Drier conditions would result in oxidation of organic matter in swamp soils, which would reduce the soil's water-holding capacity and ability to retain water during droughts. Drier soils would increase vulnerability of the floodplain to fire and could also reduce the ability of riverine forests to remove nitrates and other pollutants from river water. Loss of inundated areas resulting from flow reductions at low flow would eliminate aquatic habitats that are critical to the survival of floodplain fishes and aquatic invertebrates, and are important to many other animals that use the floodplain. If flow reductions occurred during high flows, main channel fishes could decrease in diversity and abundance because they are seasonally dependent on flooded forests for food, shelter, and reproduction. In addition, aquatic organisms in the river and estuary could be adversely affected because they depend on particulate organic detritus and other floodplain exports as food sources.

Florida↗

Water use and availability in the Woonasquatucket and Moshassuck River basins, north-central Rhode Island

The Woonasquatucket River Basin includes 51.0 square miles, and the Moshassuck River Basin includes 23.8 square miles in north-central Rhode Island. The study area comprises these two basins. The two basins border each other with the Moshassuck River Basin to the northeast of the Woonasquatucket River Basin. Seven towns are in the Woonasquatucket River Basin, and six towns are in the Moshassuck River Basin. To determine the water use and availability in the study area, water supply and discharge data were collected for these river basins for the 1995–99 period, and compared to estimated long-term water available. The study area is unique in the State of Rhode Island, because no withdrawals from major public suppliers were made during the study period. Withdrawals were, therefore, limited to self-supplied domestic use, two minor suppliers, and one self-supplied industrial user. Because no metered data were available, the summer water withdrawals were assumed to be the same as the estimates for the rest of the year. Seven major water suppliers distribute an average of 17.564 million gallons per day for use in the study area from sources outside of the study area. The withdrawals from minor water suppliers were 0.017 million gallons per day in the study area, all in the town of Smithfield in the Woonasquatucket River Basin. The remaining withdrawals in the study area were estimated to be 0.731 million gallons per day by self-supplied domestic, commercial, industrial, and agricultural users. Return flows in the study area included self-disposed water and disposal from permitted dischargers, including the Smithfield Sewage Treatment Plant. Return flows accounted for 4.116 million gallons per day in the study area. Most public-disposed water (15.195 million gallons per day) is collected by the Narragansett Bay Commission and is disposed outside of the basin in Narragansett Bay. The PART program, a computerized hydrograph-separation application, was used at one index stream-gaging station to determine water availability based on the 75th, 50th, and 25th percentiles of the total base flow, the base flow minus the 7-day, 10-year flow criteria, and the base flow minus the Aquatic Base Flow criteria. The index station selected was the Branch River at Forestdale, which is close to the study area and has a similar percentage of sand and gravel area. Water availability was estimated on the basis of baseflow contributions from sand and gravel deposits and till deposits at the index station. Flows were computed for June, July, August, and September 1957–2000, and a percentage of the total flow was determined to come from either sand and gravel deposits, or till, by using a regression equation. The base-flow contributions were converted to a flow per unit area at the station for the till and for the sand and gravel deposits and then applied to the deposits in the study area basins. These values were used to estimate the gross yield of base flow, as well as to subtract the two low flows (7-day, 10-year flow, and Aquatic Base Flow criteria). The results from the Branch River stream-gaging station were lowest in August at the 75th, 50th, and 25th percentile for total flow with either flow criteria subtracted. The estimated August gross yield at the 50th percentile from the Woonasquatucket River Basin was 12.94 million gallons per day, and 5.91 million gallons per day from the Moshassuck River Basin. A ratio was calculated that is equal to total withdrawals divided by water availability. Water-availability flow scenarios at the 75th, 50th, and 25th percentiles for the basins, which are based on total water available from base-flow contributions from till and sand and gravel deposits in the basins, were assessed. The ratios were the highest in July for the 50th percentile estimated gross yield minus Aquatic Base Flow (ABF) flow criteria, where withdrawals are close to the available water. Ratios are not presented if the available water is less than the flow criteria. The ratio of withdrawals to the July gross yield at the 50th percentile minus Aquatic Base Flow was 0.796 for the Woonasquatucket and 0.275 for the Moshassuck River Basin. A long-term hydrologic budget was calculated for the period of 1956–2000 for the Woonasquatucket River Basin and the period of 1964–2000 for the Moshassuck River Basin. The water withdrawals and return flows used in the budget were from 1995 through 1999. For the hydrologic budget, inflow was assumed to equal outflow and was about 120 million gallons per day in the Woonasquatucket River Basin and 56 million gallons per day in the Moshassuck River Basin. The estimated inflows from precipitation and water return flow were 97.3 and 2.7 percent, respectively, in the Woonasquatucket River Basin, and 98.3 and 1.7 percent, respectively, in the Moshassuck River Basin. The estimated outflows from evapotranspiration, streamflow, and water withdrawals were 43.4, 56.1, and 0.5 percent, respectively, in the Woonasquatucket River Basin, and 49.8, 50, and 0.2 percent, respectively, in the Moshassuck River Basin.

Rhode Island↗

Simulation of conservative-constituent transport in the Red River of the North Basin, North Dakota and Minnesota, 2003-04

Population growth along with possible future droughts in the Red River of the North (Red River) Basin will create an increasing need for reliable water supplies. Therefore, as a result of the Dakota Water Resources Act of 2000, the Bureau of Reclamation identified eight water-supply alternatives (including a no-action alternative) to meet future water needs in the basin. Because of concerns about the possible effects of the alternatives on water quality in the Red River and the Sheyenne River and in Lake Winnipeg, Manitoba, the Bureau of Reclamation needs to prepare an environmental impact statement that describes the specific environmental effects of each alternative. To provide information for the environmental impact statement, the U.S. Geological Survey, in cooperation with the Bureau of Reclamation, conducted a study to develop and apply a water-quality model, hereinafter referred to as the Red River water-quality model, to part of the Red River and the Sheyenne River to simulate conservative-constituent transport in the Red River Basin. The Red River water-quality model is a one-dimensional, steady-state flow and transport model for selected constituents in the Red River and the Sheyenne River. The model simulates the flow and transport of total dissolved solids, sulfate, and chloride during steady-state conditions. The physical model domain includes the Red River from the confluence of the Bois de Sioux and Otter Tail Rivers to the Red River at Emerson, Manitoba, and the Sheyenne River from above Harvey, N. Dak., to the confluence with the Red River. The Red River water-quality model was calibrated and tested using data collected at 34 sites from September 15 through 16, 2003, and from May 10 through 13, 2004. Water-quality samples were collected during low, steady-flow conditions from September 15 through 16, 2003, and during medium, unsteady-flow conditions from May 10 through 13, 2004. The simulated total dissolved-solids, sulfate, and chloride concentrations generally were within 5 percent of the measured concentrations. The Red River water-quality model was used to simulate conservative-constituent transport in the Red River and the Sheyenne River for the eight water-supply alternatives identified by the Bureau of Reclamation. For the first set of eight simulations, September 2003 streamflows were used with projected 2050 return flows and withdrawals. For the second set of eight simulations, the September 2003 streamflows were reduced by 25 percent. The simulated concentrations for three of the alternatives generally were lower than for the no-action alternative. Of those alternatives, one would result in a decrease in concentrations for two constituents, one would result in a decrease in concentrations for all three constituents, and one would result in a decrease in concentrations for one constituent and an increase in concentrations for another constituent. For four of the alternatives, the differences between the mean simulated concentrations were less than calibration errors, indicating the effects of those alternatives on water quality in the rivers is uncertain. The effects of reduced streamflow on simulated total dissolved-solids, sulfate, and chloride concentrations were greatest for alternative 2. Reduced streamflow probably has an effect on simulated total dissolved-solids concentrations for alternatives 2, 3, 5, and 7 and on simulated sulfate concentrations for alternatives 2 and 5. Except for alternative 2, reduced streamflow had little effect on simulated chloride concentrations.

Scientific Investigations Report↗

Water quality of the St. Clair River, Lake St. Clair, and their U.S. tributaries, 1946-2005

The St. Clair River/Lake St. Clair waterway forms an international boundary between the United States and Canada. The waters of the area are an important part of the cultural heritage of the area and serves as an important water-supply and power-generating resource; the waterway also supports an economy based largely on recreation, agriculture, and manufacturing. This report was undertaken as part of the Lake St. Clair Regional Monitoring Project for the purpose of providing a comprehensive assessment of the hydrological, chemical, and physical state of the surface water of Lake St. Clair and its tributaries. The data varied in focus and density over the period of compilation which in many cases this variation prevented the completion of statistical analyses because data did not meet minimum comparability or quality requirements for those tests. Comparison of water quality of the Belle, Black, Clinton, and Pine River Basins, as well as basins of minor rivers in the study area, showed that water quality in many of the tributaries, particularly the Clinton River and some of the minor rivers, was degraded compared to the water quality of the St. Clair River/Lake St. Clair waterway. Data analyses included comparison of nutrients, chloride, specific conductance, turbidity, biochemical oxygen demand (BOD), and pesticides among the basins and the St. Clair River. Median concentrations of total nitrate were well below the recommended USEPA total nitrogen ambient water-quality criterion of 0.54 mg/L as N for nutrient ecoregion VII for all study-area streams except the Clinton River. More than 93 percent of the phosphorus concentrations for the Belle, Black, Pine and minor river basins and 84 percent of the phosphorus concentrations for the Clinton River Basin are greater than the USEPA recommended ambient total phosphorus criterion of 0.033 mg/L for rivers and streams. Nine chloride concentrations exceeded the USEPA criterion maximum concentration (CMC) for chloride set at 860 mg/L for all study-area streams, with the six largest being in the Belle River Basin. Higher chloride concentrations were increasingly common from 2002 to 2005. The urban minor river basins had the highest median specific conductance, whereas the agricultural Pine River Basin had the lowest median specific conductance. The median values of BOD for the five basins in the study area ranged from 2.4 mg/L for the Pine River Basin to 3.2 mg/L for the Black and Clinton River Basins, whereas the median for the St. Clair River was 0.5 mg/L. In 1985, the highest concentrations of pesticides were found in samples from the mouth of the Clinton River; however, in 1996–98, the majority of high pesticide concentrations were found in samples from the Black River. Changing land-use patterns, specifically conversion of agricultural lands to urban/residential lands in the Clinton River Basin, may explain this difference. Trend analysis was done for four stream sites where adequate data were available. These analyses identified no significant water-quality changes at a stream site on the Black River, where land-use patterns have changed little in the past few decades. This stands in marked contrast to trend analysis for three stream sites in the Clinton River Basin, which has undergone significant land-use change. The changes at the Clinton River stream sites, ranging from 5 to 13 significant trends, were generally decreases in nutrients and increases in total dissolved solids (TDS) and chloride. The greater flow volume of the St. Clair River/Lake St. Clair waterway is able to assimilate incoming dissolved and suspended constituents from tributaries with little effect upon its overall water quality, although incomplete mixing may result in localized water-quality impairment downstream from tributary confluences. Mixing effects on Lake St. Clair water quality was also demonstrated in analysis of Escherichia coli ( E. coli ) data collected at paired nearshore/offshore sites, which reflected similarity in water quality among many paired sites.

Michigan↗

Ground water redox zonation near La Pine, Oregon: Relation to river position within the aquifer–riparian zone continuum

Increasing residential development since in the 1960s has lead to increases in nitrate concentrations in shallow ground water in parts of the 247 square mile study area near La Pine, Oregon. Denitrification is the dominant nitrate-removal process that occurs in suboxic ground water, and suboxic ground water serves as a barrier to transport of most nitrate in the aquifer. Oxic ground water, on the other hand, represents a potential pathway for nitrate transport from terrestrial recharge areas to the Deschutes and Little Deschutes Rivers. The effects of present and potential future discharge of ground-water nitrate into the nitrogen-limited Deschutes and Little Deschutes Rivers are not known. However, additions of nitrogen to nitrogen-limited rivers can lead to increases in primary productivity which, in turn, can increase the magnitudes of dissolved oxygen and pH swings in river water. An understanding of the distribution of oxic ground water in the near-river environment could facilitate understanding the vulnerability of these rivers and could be a useful tool for management of these rivers. In this study, transects of temporary wells were installed in sub-river sediments beneath the Deschutes and Little Deschutes Rivers near La Pine to characterize near-river reduction/oxidation (redox) conditions near the ends of ground-water flow paths. Samples from transects installed near the center of the riparian zone or flood plain were consistently suboxic. Where transects were near edges of riparian zones, most ground-water samples also were suboxic. Oxic ground water (other than hyporheic water) was uncommon, and was only detected near the outside edge of some meander bends. This pattern of occurrence likely reflects geochemical controls throughout the aquifer as well as geochemical processes in the microbiologically active riparian zone near the end of ground-water flow paths. Younger, typically less reduced ground water generally enters near-river environments through peripheral zones, whereas older, typically more reduced ground water tends to discharge closer to the center of the river corridor. Such distributions of redox state reflect ground-water movement and geochemical evolution at the aquifer-scale. Redox state of ground water undergoes additional modification as ground water nears discharge points in or adjacent to rivers, where riparian zone processes can be important. Lateral erosion of river systems away from the center of the flood plain can decrease or even eliminate interactions between ground water and reducing riparian zone sediments. Thus, ground water redox patterns in near-river sediments appear to reflect the position of a river within the riparian zone/aquifer continuum. Spatial heterogeneity of redox conditions near the river/aquifer boundary (that is, near the riverbed) makes it difficult to extrapolate transect-scale findings to a precise delineation of the oxic-suboxic boundary in the near-river environment of the entire study area. However, the understanding of relations between near-river redox state and proximity to riparian zone edges provides a basis for applying these results to the study-area scale, and could help guide management efforts such as nitrogen-reduction actions or establishment of Total Maximum Daily Load criteria. Coupling the ground-water redox-based understanding of river vulnerability with ground-water particle-tracking-based characterization of connections between upgradient recharge areas and receiving rivers demonstrates one means of linking effects of potential nitrate loads at the beginning of ground-water flow paths with river vulnerability.

Oregon↗

Guide to Surficial Geology and River-Bluff Exposures, Noatak National Preserve, Northwestern Alaska

From its origin in rugged granitic highlands of the central Brooks Range, the Noatak River flows westward between the De Long Mountains and the Baird Mountains before turning south to enter Kotzebue Sound. Glaciers of middle and late Pleistocene age entered the Noatak River valley from the east, north, and south. Glaciers flowed down the upper Noatak River valley from the rugged peaks at its head, merging with tributary glaciers that issued from cirque-headed valleys along its south flank. Farther downvalley, small glaciers flowed northward from the Baird Mountains and much larger glaciers issued from the De Long Mountains. The De Long Mountains glaciers expanded southward to cover parts of the Noatak valley floor; they dammed the Noatak River during successive advances, creating a series of glacial lakes. The more extensive glacial advances dammed huge lakes that filled the Aniuk Lowland to overflowing. At various times, overflow waters spilled northward through Howard Pass, southward via Hunt River into the Kobuk River system, and westward down a series of channelways that skirted south of the glacier margins. Prominent bluffs along the Noatak River and its principal tributaries reveal glacial, glaciolacustrine, fluvial, and eolian sediments. More than 120 measured bluff exposures are described and illustrated in this report. These are dated by 92 radiocarbon age determinations and by the presence of the old Crow tephra, which was deposited about 130,000-140,000 years ago. Six geologic base maps, which cover sections of the Noatak River valley from east to west, show the locations of the river bluffs in relation to the glacial, glaciolacustrine, and fluvial deposits that cover the valley floor. The upper Noatak River valley is dominated by a bulky end moraine near Douglas Creek that was deposited during the last glacial maximum about 25,000-15,000 14C yr BP (termed the Itkillik II phase in the central Brooks Range glacial succession). Bluffs along this section of the Noatak River reveal thick till that underlies the moraine and interfingers downvalley with outwash and upvalley with moraine-dammed lake deposits. Remnants of older river gravels that underlie the set of glacial deposits contain wood fragments that are dated at about 35,000-30,000 14C yr BP. The Aniuk River area, which includes much of the eastern Aniuk Lowland, contains older moraines derived from headwaters of the Noatak valley that lie downvalley from the Douglas Creek moraine. These older moraines are assigned to the Itkillik IA and IB advances of the central Brooks Range glacial succession. Their deposits are seldom visible in river bluffs, but associated outwash and glaciolacustrine sediments are commonly exposed. More ancient end moraines farther downvalley are buried beneath lake deposits of the Aniuk Lowland, but are traceable as subdued arcuate drainage divides and as boulder concentrations in river bluffs or along their bases. The Cutler River area was occupied by glacial lakes assignable to three separate glacial phases. The oldest of these was probably dammed by the Cutler moraine, which crosses the Noatak valley floor near the mouth of Cutler River. The younger two are correlated with Itkillik-age deposits in the Aniuk Lowland. Glaciers of Itkillik age also flowed northwestward down the Cutler and Imelyak valley systems from cirques along the Noatak-Kobuk divide, but they did not reach the Noatak valley floor. The western Aniuk Lowland, which extends westward from the Cutler River mouth to the lower course of Nimiuktuk River, is dominated by a series of large end moraines deposited by glaciers from the De Long Mountains and that flowed southeastward down the Nimiuktuk valley system and then up the Noatak River valley. The Cutler moraine is the most extensive of these deposits. Following the Cutler glaciation, less extensive glacial advances built end moraines near the present-day mouths of Makpik Creek and Anisak River during in

Scientific Investigations Report↗

Groundwater and surface-water interaction within the upper Smith River Watershed, Montana 2006-2010

The 125-mile long Smith River, a tributary of the Missouri River, is highly valued as an agricultural resource and for its many recreational uses. During a drought starting in about 1999, streamflow was insufficient to meet all of the irrigation demands, much less maintain streamflow needed for boating and viable fish habitat. In 2006, the U.S. Geological Survey, in cooperation with the Meagher County Conservation District, initiated a multi-year hydrologic investigation of the Smith River watershed. This investigation was designed to increase understanding of the water resources of the upper Smith River watershed and develop a detailed description of groundwater and surface-water interactions. A combination of methods, including miscellaneous and continuous groundwater-level, stream-stage, water-temperature, and streamflow monitoring was used to assess the hydrologic system and the spatial and temporal variability of groundwater and surface-water interactions. Collectively, data are in agreement and show: (1) the hydraulic connectedness of groundwater and surface water, (2) the presence of both losing and gaining stream reaches, (3) dynamic changes in direction and magnitude of water flow between the stream and groundwater with time, (4) the effects of local flood irrigation on groundwater levels and gradients in the watershed, and (5) evidence and timing of irrigation return flows to area streams. Groundwater flow within the alluvium and older (Tertiary) basin-fill sediments generally followed land-surface topography from the uplands to the axis of alluvial valleys of the Smith River and its tributaries. Groundwater levels were typically highest in the monitoring wells located within and adjacent to streams in late spring or early summer, likely affected by recharge from snowmelt and local precipitation, leakage from losing streams and canals, and recharge from local flood irrigation. The effects of flood irrigation resulted in increased hydraulic gradients (increased groundwater levels relative to stream stage) or even reversed gradient direction at several monitoring sites coincident with the onset of nearby flood irrigation. Groundwater-level declines in mid-summer were due to groundwater withdrawals and reduced recharge from decreased precipitation, increased evapotranspiration, and reduced leakage in some area streams during periods of low flow. Groundwater levels typically rebounded in late summer, a result of decreased evapotranspiration, decreased groundwater use for irrigation, increased flow in losing streams, and the onset of late-season flood irrigation at some sites. The effect of groundwater and surface-water interactions is most apparent along the North and South Forks of the Smith River where the magnitude of streamflow losses and gains can be greater than the magnitude of flow within the stream. Net gains consistently occurred over the lower 15 miles of the South Fork Smith River. A monitoring site near the mouth of the South Fork Smith River gained (flow from the groundwater to the stream) during all seasons, with head gradients towards the stream. Two upstream sites on the South Fork Smith River exhibited variable conditions that ranged from gaining during the spring, losing (flowing from the stream to the groundwater) during most of the summer as groundwater levels declined, and then approached or returned to gaining conditions in late summer. Parts of the South Fork Smith River became dry during periods of losing conditions, thus classifying this tributary as intermittent. The North Fork Smith River is highly managed at times through reservoir releases. The North Fork Smith River was perennial throughout the study period although irrigation diversions removed a large percentage of streamflow at times and losing conditions persisted along a lower reach. The lowermost reach of the North Fork Smith River near its mouth transitioned from a losing reach to a gaining reach throughout the study period. Groundwater and surface-water interactions occur downstream from the confluence of the North and South Fork Smith Rivers, but are less discernible compared to the overall magnitude of the main-stem streamflow. The Smith River was perennial throughout the study. Monitoring sites along the Smith River generally displayed small head gradients between the stream and the groundwater, while one site consistently showed strongly gaining conditions. Synoptic streamflow measurements during periods of limited irrigation diversion in 2007 and 2008 consistently showed gains over the upper 41.4 river miles of the main stem Smith River where net gains ranged from 13.0 to 28.9 cubic feet per second. Continuous streamflow data indicated net groundwater discharge and small-scale tributary inflow contributions of around 25 cubic feet per second along the upper 10-mile reach of the Smith River for most of the 2010 record. A period of intense irrigation withdrawal during the last two weeks in May was followed by a period (early June 2010 to mid-July 2010) with the largest net increase (an average of 71.1 cubic feet per second) in streamflow along this reach of the Smith River. This observation is likely due to increased groundwater discharge to the Smith River resulting from irrigation return flow. By late July, the apparent effects of return flows receded, and the net increase in streamflow returned to about 25 cubic feet per second. Two-dimensional heat and solute transport VS2DH models representing selected stream cross sections were used to constrain the hydraulic properties of the Quaternary alluvium and estimate temporal water-flux values through model boundaries. Hydraulic conductivity of the Quaternary alluvium of the modeled sections ranged from 3x10-6 to 4x10-5 feet per second. The models showed reasonable approximations of the streambed and shallow aquifer environment, and the dynamic changes in water flux between the stream and the groundwater through different model boundaries.

Montana↗

Continuous water-quality monitoring and regression analysis to estimate constituent concentrations and loads in the Red River of the North at Fargo and Grand Forks, North Dakota, 2003-12

The Red River of the North (hereafter referred to as “Red River”) Basin is an important hydrologic region where water is a valuable resource for the region’s economy. Continuous water-quality monitors have been operated by the U.S. Geological Survey, in cooperation with the North Dakota Department of Health, Minnesota Pollution Control Agency, City of Fargo, City of Moorhead, City of Grand Forks, and City of East Grand Forks at the Red River at Fargo, North Dakota, from 2003 through 2012 and at Grand Forks, N.Dak., from 2007 through 2012. The purpose of the monitoring was to provide a better understanding of the water-quality dynamics of the Red River and provide a way to track changes in water quality. Regression equations were developed that can be used to estimate concentrations and loads for dissolved solids, sulfate, chloride, nitrate plus nitrite, total phosphorus, and suspended sediment using explanatory variables such as streamflow, specific conductance, and turbidity. Specific conductance was determined to be a significant explanatory variable for estimating dissolved solids concentrations at the Red River at Fargo and Grand Forks. The regression equations provided good relations between dissolved solid concentrations and specific conductance for the Red River at Fargo and at Grand Forks, with adjusted coefficients of determination of 0.99 and 0.98, respectively. Specific conductance, log-transformed streamflow, and a seasonal component were statistically significant explanatory variables for estimating sulfate in the Red River at Fargo and Grand Forks. Regression equations provided good relations between sulfate concentrations and the explanatory variables, with adjusted coefficients of determination of 0.94 and 0.89, respectively. For the Red River at Fargo and Grand Forks, specific conductance, streamflow, and a seasonal component were statistically significant explanatory variables for estimating chloride. For the Red River at Grand Forks, a time component also was a statistically significant explanatory variable for estimating chloride. The regression equations for chloride at the Red River at Fargo provided a fair relation between chloride concentrations and the explanatory variables, with an adjusted coefficient of determination of 0.66 and the equation for the Red River at Grand Forks provided a relatively good relation between chloride concentrations and the explanatory variables, with an adjusted coefficient of determination of 0.77. Turbidity and streamflow were statistically significant explanatory variables for estimating nitrate plus nitrite concentrations at the Red River at Fargo and turbidity was the only statistically significant explanatory variable for estimating nitrate plus nitrite concentrations at Grand Forks. The regression equation for the Red River at Fargo provided a relatively poor relation between nitrate plus nitrite concentrations, turbidity, and streamflow, with an adjusted coefficient of determination of 0.46. The regression equation for the Red River at Grand Forks provided a fair relation between nitrate plus nitrite concentrations and turbidity, with an adjusted coefficient of determination of 0.73. Some of the variability that was not explained by the equations might be attributed to different sources contributing nitrates to the stream at different times. Turbidity, streamflow, and a seasonal component were statistically significant explanatory variables for estimating total phosphorus at the Red River at Fargo and Grand Forks. The regression equation for the Red River at Fargo provided a relatively fair relation between total phosphorus concentrations, turbidity, streamflow, and season, with an adjusted coefficient of determination of 0.74. The regression equation for the Red River at Grand Forks provided a good relation between total phosphorus concentrations, turbidity, streamflow, and season, with an adjusted coefficient of determination of 0.87. For the Red River at Fargo, turbidity and streamflow were statistically significant explanatory variables for estimating suspended-sediment concentrations. For the Red River at Grand Forks, turbidity was the only statistically significant explanatory variable for estimating suspended-sediment concentration. The regression equation at the Red River at Fargo provided a good relation between suspended-sediment concentration, turbidity, and streamflow, with an adjusted coefficient of determination of 0.95. The regression equation for the Red River at Grand Forks provided a good relation between suspended-sediment concentration and turbidity, with an adjusted coefficient of determination of 0.96.

North Dakota↗

Flow characteristics and salinity patterns of tidal rivers within the northern Ten Thousand Islands, southwest Florida, water years 2007–14

Freshwater flow to the Ten Thousand Islands estuary has been altered by the construction of the Tamiami Trail and the Southern Golden Gate Estates. The Picayune Strand Restoration Project, which is associated with the Comprehensive Everglades Restoration Plan, has been implemented to improve freshwater delivery to the Ten Thousand Islands estuary by removing hundreds of miles of roads, emplacing hundreds of canal plugs, removing exotic vegetation, and constructing three pump stations. Quantifying the tributary flows and salinity patterns prior to, during, and after the restoration is essential to assessing the effectiveness of upstream restoration efforts. Tributary flow and salinity patterns during preliminary restoration efforts and prior to the installation of pump stations were analyzed to provide baseline data and preliminary analysis of changes due to restoration efforts. The study assessed streamflow and salinity data for water years 1 2007–2014 for the Faka Union River (canal flow included), East River, Little Wood River, Pumpkin River, and Blackwater River. Salinity data from the Palm River and Faka Union Boundary water-quality stations were also assessed. Faka Union River was the dominant contributor of freshwater during water years 2007–14 to the Ten Thousand Islands estuary, followed by Little Wood and East Rivers. Pumpkin River and Blackwater River were the least substantial contributors of freshwater flow. The lowest annual flow volumes, the highest annual mean salinities, and the highest percentage of salinity values greater than 35 parts per thousand (ppt) occurred in water year 2011 at all sites with available data, corresponding with the lowest annual rainfall during the study. The highest annual flow volumes and the lowest percentage of salinities greater than 35 ppt occurred in water year 2013 for all sites with available data, corresponding with the highest rainfall during the study. In water year 2014, the percentage of monitored annual flow contributed by East River increased and the percentage of flow contributed by Faka Union River decreased, compared to the earlier years. No changes in annual flow occurred at any sites west of Faka Union River. No changes in the relative flow contributions were observed during the wet season; however, the relative amounts of streamflow increased during the dry season at East River in 2014. East River had only 1 month of negative flow in 2014 compared to 6 months in 2011 and 7 months in 2008. Higher dry season flows in East River may be in response to restoration efforts. The sites to the west of Faka Union River had higher salinities on average than Faka Union River and East River. Faka Union River had the highest range in salinities, and Faka Union Boundary had the lowest range in salinities. Pumpkin River was the tributary with the lowest range in salinities. 1 Water year is defined as the 12-month period from October 1, for any given year, through September 30 of the following year.

Florida↗

Preliminary synthesis and assessment of environmental flows in the middle Verde River watershed, Arizona

A 3-year study was undertaken to evaluate the suitability of the available modeling tools for characterizing environmental flows in the middle Verde River watershed of central Arizona, describe riparian vegetation throughout the watershed, and estimate sediment mobilization in the river. Existing data on fish and macroinvertebrates were analyzed in relation to basin characteristics, flow regimes, and microhabitat, and a pilot study was conducted that sampled fish and macroinvertebrates and the microhabitats in which they were found. The sampling for the pilot study took place at five different locations in the middle Verde River watershed. This report presents the results of this 3-year study. The Northern Arizona Groundwater Flow Model (NARGFM) was found to be capable of predicting long-term changes caused by alteration of regional recharge (such as may result from climate variability) and groundwater pumping in gaining, losing, and dry reaches of the major streams in the middle Verde River watershed. Over the period 1910 to 2006, the model simulated an increase in dry reaches, a small increase in reaches losing discharge to the groundwater aquifer, and a concurrent decrease in reaches gaining discharge from groundwater. Although evaluations of the suitability of using the NARGFM and Basin Characteristic Model to characterize various streamflow intervals showed that smallerscale basin monthly runoff could be estimated adequately at locations of interest, monthly stream-flow estimates were found unsatisfactory for determining environmental flows. Orthoimagery and Moderate Resolution Imaging Spectroradiometer data were used to quantify stream and riparian vegetation properties related to biotic habitat. The relative abundance of riparian vegetation varied along the main channel of the Verde River. As would be expected, more upland plant species and fewer lowland species were found in the upper-middle section compared to the lower-middle section, and vice-versa. Vegetation changes within the upper-middle and lower-middle reaches are related to differences in climate and hydrology. In general, the riparian vegetation of the middle Verde River watershed is that of a healthy ecosystem’s mixed age, mixed patch structure, likely a result of the mostly unaltered disturbance regime. The frequency of in-river hydrogeomorphic features (pool, riffle, run) varied along the middle Verde River channel. There was a greater abundance of riffle habitat in the upper-middle reach; the lower-middle reach included more pool habitat. The Oak Creek tributary was more homogenous in geomorphic stream habitat composition than West Clear Creek, where runs dominated the upper reaches and pools dominated many of the lower reaches. On the basis of the period of record and discharges recorded at 15-minute intervals, five flows were found to reach the gravel-transport threshold. Sediment mobilization computed with flows averaged over daily time steps yielded just three flows that reached the gravel-transport threshold, and monthly averaged flows yielded none. In the middle Verde River watershed, 15-minute data should be used when possible to evaluate sediment transport in the river system. Data from more than 300 fish surveys conducted from 1992 to 2011 were analyzed using two schemes, one that divided the river into five reaches based on basin characteristics, and a second that divided the river into five reaches based on degree of flow alteration (specifically, diversions). Fish community metrics and assemblage data were used to analyze patterns of species composition and abundance in the two approaches. Overall, native and non-native species were regularly interacting and probably competing for similar resources. Fish abundances were also analyzed in response to floods and other flow metrics. Although the data are limited, native fish abundances increased more rapidly than non-native fish abundances in response to large floods. The basin-characteristic reach analysis showed native fish in greater abundance in the upper-middle reaches of the Verde River watershed and generally decreasing with downstream distance. The median relative abundance of native fish decreased by 50 percent from reach 1 to reach 5. Using the reach scheme based on degree of flow alteration, nondiverted reaches were found to have a greater abundance of native fish than diverted reaches. In heavily diverted reaches, non-native species outnumbered native species. Fish metrics and stream-flow metrics for the 30, 90, and 365-day periods before collection were computed and the results analyzed statistically. Only abundance of all fish species was associated with the 30-day flow metrics. The 90-day flow metrics were generally positively associated with fish metrics, whereas the 365-day flow metrics had more negative correlations. In particular, significant relations were found between fish metrics and the magnitude and frequency of high flows, including maximum monthly flow, median annual number of high-flow events, and median annual maximum streamflow. Native sucker (Catostomidae) populations tended to decrease in periods of extended base flow, and fish in the non-native sunfish family (Centrarchidae) decreased in periods of flashy, high magnitude flows. A pilot study surveyed fish at five locations in the upper part of the middle Verde River watershed as a means to measure microhabitat availability and quantify native and non-native fish use of that available microhabitat. Results indicated that native and non-native species exhibit some clear differences in microhabitat use. Although at least some native and non-native fish were found in each velocity, depth, and substrate category, preferential microhabitat use was common. On a percentage basis, non-native species had a strong preference for slow-moving and deeper water with silt and sand substrate, with a secondary preference for faster moving and very shallow water and a coarse gravel substrate. Native species showed a general preference for somewhat faster, moderate depth water over coarse gravel and had no clear secondary preference. Macroinvertebrate-variables index period, high-flow year, and collection location (upper-middle Verde River, lowermiddle Verde River, or Verde River tributaries) were found to be important explanatory variables in differentiating among community metrics. Overall richness (number of unique taxa), Shannon’s diversity index, and the percent of the most dominant taxa were all highly correlated, but their response to each macroinvertebrate variable was different. The percentage of mayfly (order Ephemeroptera) taxa was significantly higher in Oak Creek and the upper-middle and lower-middle Verde River reaches, locations which have higher flows and more urbanization than other reaches. When community metrics were related to hydrologic metrics, caddisfly (order Trichoptera) populations appeared to increase and mayfly populations to decrease in response to less flashy and more stable streamflows. Conversely, caddisfly populations appeared to decrease and mayfly populations to increase in response to greater flow variability. Six locations along the Verde River were sampled for macroinvertebrates as part of a pilot study associated with this report—(1) below Granite Creek, (2) near Campbell Ranch, (3) at the U.S. Geological Survey Paulden gage, (4) at the Perkinsville Bridge, (5) at the USGS Clarkdale gage, and (6) near the Reitz Ranch property. A nonmetric multidimensional scaling ordination of macroinvertebrate assemblages showed that the Verde River below Granite Creek site was different from the five other sites and that the Perkinsville Bridge and near Reitz Ranch samples had similar community structure. The near Campbell Ranch and Paulden gage locations had similar microhabitat characteristics, with the exception of riparian cover, yet the assemblage structure was very different. The different community composition at Verde River below Granite Creek was likely due to it having the smallest substrate sizes, lowest velocities, shallowest depths, and most riparian cover of the six sites.

Arizona↗

Simulation of ground-water flow in the Mojave River basin, California

The proximity of the Mojave River ground-water basin to the highly urbanized Los Angeles region has led to rapid growth in population and, consequently, to an increase in the demand for water. The Mojave River, the primary source of surface water for the region, normally is dry-except for a small stretch of perennial flow and periods of flow after intense storms. Thus, the region relies almost entirely on ground water to meet its agricultural and municipal needs. Ground-water withdrawal since the late 1800's has resulted in discharge, primarily from pumping wells, that exceeds natural recharge. To better understand the relation between the regional and the floodplain aquifer systems and to develop a management tool that could be used to estimate the effects that future stresses may have on the ground-water system, a numerical ground-water flow model of the Mojave River ground-water basin was developed, in part, on the basis of a previously developed analog model. The ground-water flow model has two horizontal layers; the top layer (layer 1) corresponds to the floodplain aquifer and the bottom layer (layer 2) corresponds to the regional aquifer. There are 161 rows and 200 columns with a horizontal grid spacing of 2,000 by 2,000 feet. Two stress periods (wet and dry) per year are used where the duration of each stress period is a function of the occurrence, quantity of discharge, and length of stormflow from the headwaters each year. A steady-state model provided initial conditions for the transient-state simulation. The model was calibrated to transient-state conditions (1931-94) using a trial-and-error approach. The transient-state simulation results are in good agreement with measured data. Under transient-state conditions, the simulated floodplain aquifer and regional aquifer hydrographs matched the general trends observed for the measured water levels. The simulated streamflow hydrographs matched wet stress period average flow rates and times of no flow at the Barstow and Afton Canyon gages. Steady-state particle-tracking was used to estimate travel times for mountain-front and streamflow recharge. The simulated travel times for mountain-front recharge to reach the area west of Victorville were about 5,000 to 6,000 years; this result is in reasonable agreement with published results. Steady-state particle-tracking results for streamflow recharge indicate that in most subareas along the river, the particles quickly leave and reenter the river. The complaint that resulted in the adjudication of the Mojave River ground-water basin alleged that the cumulative water production upstream of the city of Barstow had overdrafted the ground-water basin. In order to ascertain the effect of pumping on ground-water and surface-water relations along the Mojave River, two pumping simulations were compared with the 1931-90 transient-state simulation (base case). The first simulation assumed 1931-90 pumping in the upper region (Este, Oeste, Alto, and Transition zone model subareas) but with no pumping in the remainder of the basin, and the second assumed 1931-90 pumping in the lower region (Centro, Harper Lake, Baja, Coyote Lake, and Afton Canyon model subareas) but with no pumping in remainder of the basin. In the upper region, assuming pumping only in the upper region, there was no change in storage, recharge from the Mojave River, ground-water discharge to the Mojave River, or evapotranspiration when compared with the base case. In the lower region, assuming pumping only in the upper region, there was storage accretion, decreased recharge from the Mojave River, increased ground-water discharge to the Mojave River, and increased evapotranspiration when compared with the base case. In the upper region, assuming pumping only in the lower region, there was storage accretion, decreased recharge from the Mojave River, increased ground-water discharge to the Mojave River, and increased evapotranspiration when compared with the base case. In the lower region, assuming pumping only in the lower region, there was less storage depletion, increased recharge from the Mojave River, increased ground-water discharge to the Mojave River, and increased evapotranspiration when compared with the base case. Overall, pumping in the lower region does not negatively affect the upper region; however, pumping in the upper region negatively affects the lower region by decreasing recharge from the Mojave River. Streamflow, pumpage, and water-level data from calendar years 1995-99 were used to validate the calibrated ground-water flow model, that is, to test that the ground-water flow model will duplicate measured data for a noncalibration period without modification of the model parameters. In general, the simulated results are in good agreement with the measured data, and the simulated hydrographs for wells in the floodplain and regional aquifers follow the measured water-level trends. Simulated streamflow data for the 1995-99 wet and dry stress periods at the Lower Narrows, Barstow, and Afton Canyon were compared with the measured data for average streamflow for the same periods; in general, the model reflects 1995-99 streamflow conditions. The simulation results also indicate that the streambed conductance values calibrated to the 1931-94 conditions reasonably simulate the 1995-99 conditions and therefore can be used for predictive purposes. To visualize the magnitude, spatial distribution, and timing of water-level changes in the basin through time, simulated hydraulic heads for 1932-99 were compared with simulated hydraulic heads for 1931. Greater than average annual inflows to the Mojave River from the headwaters during the late 1930's and throughout much of the 1940's resulted in simulated hydraulic heads that were higher than the 1931 hydraulic heads along the Mojave River in most model subareas. Parts of the Baja and Harper Lake model subareas had declines in the simulated hydraulic head because of the increase in agricultural pumpage. By 1960, the simulated hydraulic heads were lower than the simulated hydraulic heads for 1931 in all model subareas of the floodplain and the regional aquifers because of pumpage. After 1960, the size and the magnitude of the areas of the regional aquifer for which simulated hydraulic heads were lower than those for 1931 continued to increase until the end of the simulation (1999). Along the Mojave River, hydraulic heads fluctuated in the floodplain aquifer in response to recharge during years with large inflows with little apparent effect on the simulated hydraulic heads in the regional aquifer. Three water-management alternatives were evaluated to determine their effect on ground-water resources using the calibrated ground-water flow model. The water-management alternatives consider the artificial recharge of imported water allocated to the Mojave Water Agency (MWA): the first assumes that zero percent of the MWA allocation is available (alternative 1), the second assumes that 50 percent of the MWA allocation is available (alternative 2), and the third assumes that 100 percent of the MWA allocation is available (alternative 3). Each of the three water-management alternatives were evaluated for a 20-year drought. Streamflow conditions were simulated using the 20-year drought of 1945-64 with associated calibrated stream parameters. Management alternative 1 results in a reduction in ground-water recharge from the Mojave River compared with average recharge for 1995-99; this reduction is reflected in simulated hydraulic-head declines between 1999 and 2019 of as much as 45 feet. Management alternatives 2 and 3 result in no change in recharge from the Mojave River for management alternative 2 and a small increase for management alternative 3 when compared with recharge for management alternative 1. The artificial recharge of imported water causes increases in simulated hydraulic head for both management alternatives at each of the artificial-recharge sites. Some of the increases are related to water that recharges into areas of low transmissivity which implies that the recharge operations may benefit from being distributed over a larger area.

California↗

Flow and salinity characteristics of the upper Suwannee River Estuary, Florida

Continuous stage and salinity data were recorded from August 1995 to December 1997 at four gages located in the upper Suwannee River Estuary. Continuous velocity data were recorded at two of the four gages and continuous discharge data were computed for these two gages. Additional salinity data were collected at 15 monitoring sites from November 1992 to October 1997. Wind-speed data collected at Cedar Key, Florida, during the study period were utilized in the regression analysis. Correlations were developed to describe the longitudinal extent of the saltwater/freshwater interface (defined as 0.5 parts per thousand (ppt) salinity) and salinity distribution in the upper Suwannee River Estuary. On East Pass, the median of difference between daily maximum and daily minimum stage ranged from 2.92 feet for a gage at river mile 3.8 to 3.33 feet for a gage at river mile 1.2. Velocities tended to be unidirectional with some instances of bilateral flow. Reversal in flow direction was common and coincided with rising tides. Monthly mean discharges for the Suwannee River near Wilcox, Florida, during the study period typically were lower than the average for the period of record (1931.97). Discharge near Wilcox averaged 4,000 cubic feet per second (ft3/s) lower than the long-term average from June to September 1996. An El Ni�o event induced precipitation that was responsible for higher than average monthly mean discharge measured near Wilcox during November and December 1997. The maximum observed salinity concentrations for the study period ranged from 28.20 ppt at river mile 3.8 to 31.00 ppt at river mile 1.9. Median daily fluctuations of salinity at river miles 3.8 and 1.2 were 0.12 and 11.31 ppt, respectively. The maximum daily upstream extent of the saltwater/freshwater interface was at or upstream from river mile 4.0 for about 50 percent of the study period. The interface was at or upstream from river mile 3.8 and river mile 2.8 40 and 57 percent of the time. The interface was downstream from river mile 1.2 and river mile 1.9 11 and 21 percent of the time, respectively. The median daily maximum salinity for the four gages ranged from 0.22 ppt at river mile 3.8 to 11.50 ppt at river mile 1.2. Multiple linear-regression models were developed to determine the isohaline location for 0.5, 2, 5, 10, 15, and 20 ppt salinity, and to predict the maximum daily salinity concentrations at gages as a function of stage, river discharge, and wind. The salinity at a location was inversely proportional to the daily mean discharge at the Suwannee River near Wilcox. Under extreme low-flow conditions (3,500 ft3/s), the regression models predicted that the interface would occur at river mile 7.2, upstream from the Gopher River confluence with the Suwannee River. Wind speed did not have a substantial influence on model predictions. The period of record for the Suwannee River at Wilcox was applied to appropriate regression models to produce a synthetic record of historical salinity distributions. Two withdrawal scenarios, a 10-percent diversion and a 1,000 ft3/s diversion, were evaluated relative to high-, medium-, and low-flow conditions and compared to actual salinity distributions. The 10-percent and 1,000 ft3/s withdrawals scenarios resulted in the isohaline of 0.5 ppt migrating 0.6 and 1.58 miles upstream from the actual isohaline location for a low-flow condition of 4,500 ft3/s, and migrating 0.14 and 0.65 miles upstream from the actual isohaline location for a high-flow conditions of 20,300 ft3/s for Wadley Pass.

Florida↗

Pesticide concentrations in water and in suspended and bottom sediments in the New and Alamo rivers, Salton Sea Watershed, California, April 2003

This report contains pesticide concentration data for water, and suspended and bed sediment samples collected in April 2003 from twelve sites along the New and Alamo Rivers in the Salton Sea watershed, in southeastern California. The study was done in collaboration with the California State Regional Water Quality Control Board, Colorado River Region, to assess inputs of current-use pesticides associated with water and sediment into the New and Alamo Rivers. Five sites along the New River and seven sites along the Alamo River, downstream of major agricultural drains, were selected and covered the lengths of the rivers from the international boundary to approximately 1.5 km from the river mouths. Sampling from bridges occurred at seven of the twelve sites. At these sites, streamflow measurements were taken. These same sites were also characterized for cross-stream homogeneity by measuring dissolved oxygen, pH, specific conductance, temperature, and suspended solids concentration at several vertical (depths) and horizontal (cross-stream) points across the river. Large volume water samples (200?300 L) were collected for isolation of suspended sediments by flow-through centrifugation. Water from the outflow of the flow-through centrifuge was sampled for the determination of aqueous pesticide concentrations. In addition, bottom sediments were sampled at each site. Current-use pesticides and legacy organochlorine compounds (p,p'-DDT, p,p'-DDE and p,p'-DDD) were extracted from sediments and measured via gas chromatography/mass spectrometry (GC/MS). Organic carbon and percentage of fines were also determined for suspended and bottom sediments. Cross-stream transects of dissolved constituents and suspended sediments showed that the rivers were fairly homogeneous at the sites sampled. Streamflow was higher at the outlet sites, with the Alamo River having higher flow (1,240 cfs) than the New River (798 cfs). Twelve current-use pesticides, one legacy organochlorine compound (p,p'-DDE), and the additive piperonyl butoxide were detected in water samples. Trifluralin was found in the highest concentration of all detected compounds (68.5?599 ng/L) at all sites in both rivers, except for the international boundary sites. Atrazine was also detected in high concentration (51.0?285 ng/L) at several sites. The outlet sites had among the highest numbers of pesticides detected and the international boundary sites had the lowest numbers of pesticides detected for both rivers. The numbers of pesticides detected were greater for the Alamo River than for the New River. Six current-use pesticides and two legacy organochlorines (p,p'-DDE and p,p'-DDD) were found associated with suspended and bed sediments. The DDT metabolite p,p'-DDE was detected in all suspended and bed sediments from the Alamo River, but only at two sites in the New River. Dacthal, chlorpyrifos, pendimethalin, and trifluralin were the most commonly detected current-use pesticides. Trifluralin was the compound found in the highest concentrations in suspended (14.5?120 ng/g) and bed (1.9?9.0 ng/g) sediments. The sites along the Alamo River had more frequent detections of pesticides in suspended and bed sediments when compared with the New River sites. The greatest number of pesticides that were detected in suspended sediments (seven) were in the samples from the Sinclair Road and Harris Road sites. For bottom sediments, the Alamo River outlet site had the greatest number of pesticide detections (eight).

Data Series↗

Behavior and movement of adult summer steelhead following collection and release, lower Cowlitz River, Washington, 2012--2013

Executive Summary Historically, adult summer steelhead Oncorhynchus mykiss returning to hatcheries on the lower Cowlitz River were sometimes transported and released in the river (recycled) to provide additional angling opportunity for the popular sport fishery in the basin. However, this practice has not been used in recent years because of concerns associated with interactions between hatchery fish and wild fish. Fishery managers were interested in resuming recycling but lacked information regarding effects of this practice on wild steelhead so we conducted a study during 2012–2013 to: (1) enumerate recycled steelhead that returned to the hatchery or were removed by anglers; and (2) determine if steelhead that were not removed from the river remained in the system where they could interact with wild fish. During June–August 2012, a total of 549 summer steelhead were captured at the Cowlitz Salmon Hatchery, tagged, and released downstream near the Interstate 5 Bridge. All recycled steelhead were tagged with a white Floy ® tag and opercle-punched; 109 (20 percent) of these fish also were radio-tagged. All adult steelhead that return to the hatchery were handled by hatchery staff so recycled steelhead that returned to the hatchery were enumerated daily. A creel survey and voluntary angler reports were used to determine the number of recycled steelhead that were caught by anglers. We established three fixed telemetry monitoring sites on the mainstem Cowlitz River and eight additional sites were deployed on tributaries to the lower Cowlitz River where wild winter steelhead are known to spawn. We also conducted mobile tracking from a boat during October 2012, November 2012, and January 2013 to locate radio-tagged fish. A total of 10,722 summer steelhead were captured at the Cowlitz Salmon Hatchery in 2012, which was the largest return since 2008. River flows during much of the study period were similar to 2008–2011 average flows, however, high-flow periods in July and November 2012 were nearly twice as high as the 2008–2011 average flows. We determined that 50 percent (273 fish) of the recycled steelhead returned to the hatchery and 18 percent (102 fish) of the recycled steelhead were caught by anglers. Most (243 fish; 89 percent) of the recycled steelhead that returned to the hatchery were recollected during July–August. The average elapsed time from release to recapture at the hatchery was 9 days (d) and 72 percent (182 fish) of the fish returned to the hatchery within 14 d of release. These trends were similar for recycled steelhead that were caught by anglers. Most fish were caught during July–August and the median time from release to capture was 10 d. We determined that 65 percent (70 fish) of the angler-caught fish returned to the hatchery within 14 d of release. River flows appeared to affect both hatchery returns and angler catch. The daily number of recycled steelhead that were recollected at the hatchery were low during periods when river flows were decreasing and high during periods when river flows were increasing. Conversely, daily angler catch of recycled steelhead generally was low when flows were increasing and high when flows were decreasing. We determined that 32 percent of the recycled steelhead (174 fish) were not removed from the lower Cowlitz River, based on observations from hatchery returns and angler reports, but results from the radio-tagged fish were insightful for understanding what may have happened to these fish. By comparison, we determined that 24 percent of the radio-tagged fish were not known to have been removed from the river. We determined that 12 percent of these fish were actively moving in the lower Cowlitz River during October 2012–January 2013. None of the radio-tagged fish were detected in tributaries during the study period except for a single fish that spent approximately 7 d in the Toutle River during early September. During October 2012–January 2013, 10 percent of the radio-tags from recycled steelhead were detected near popular fishing areas, and 2 percent of the radio-tagged steelhead were never detected during the study period. We suspect that a large proportion of these fish may have been harvested and not reported, or died. Detection patterns of radio-tagged steelhead showed that most fish (82 percent) moved upstream from the release site and were detected at the Trout Hatchery and the Barrier Dam sites. The median time from release to detection at these sites was 3.7 d and many of these fish made multiple trips between the two sites. Nearly one-third (29 percent) of the recycled steelhead that were detected at the Trout Hatchery and the Barrier Dam made at least two trips between the sites and some fish made as many as six trips. Radio-tagged fish that remained in the lower Cowlitz River during the spawning period (December 2012–January 2013) were observed in the river reach between the mouth of Ostrander Creek (river mile 10) and the Trout Hatchery (river mile 44). During this study, we collected data on opercle punch regrowth rates to understand the temporal effectiveness of this marking technique. We took opercle measurements for a total of 190 fish during the study. Fresh opercle punches were measured for 63 fish at the time of marking, and the remaining 127 fish were measured when fish returned to the hatchery. We determined that opercle punches remained open for about 30 d. The holes appeared to regrow slowly in the first 20 d after marking, but regrowth accelerated during the 20–30 d post-marking period. After 30 d, all opercle punches that we observed had completely closed due to tissue regrowth. Our study showed that a large proportion (68 percent) of the recycled steelhead were removed from the lower Cowlitz River. These fish primarily entered the hatchery or were caught by anglers within 14 d of release, which suggests that they present minimal risk to wild fish in the system. However, the remaining fish (32 percent) could not be accounted for, which may complicate fisheries management decisions associated with recycling summer steelhead. Findings from the radiotelemetry study suggest that unreported harvest or mortality could explain a large proportion of those fish that were not reported as having been removed from the river. Furthermore, intensive monitoring of the key spawning tributaries failed to detect a single fish during the spawning period. These findings were supported by observations from weir traps operated by the Washington Department of Fish and Wildlife. Our findings indicate that additional research may be warranted to further examine the effects of recycling hatchery summer steelhead in the lower Cowlitz River.

Washington↗

Behavior patterns and fates of adult steelhead, Chinook salmon, and coho salmon released into the upper Cowlitz River Basin, 2005–09 and 2012, Washington

A multiyear radiotelemetry evaluation was conducted to monitor adult steelhead ( Oncorhynchus mykiss ), Chinook salmon ( O. tshawytscha ), and coho salmon ( O. kisutch ) behavior and movement patterns in the upper Cowlitz River Basin. Volitional passage to this area was eliminated by dam construction in the mid-1960s, and a reintroduction program began in the mid-1990s. Fish are transported around the dams using a trap-and-haul program, and adult release sites are located in Lake Scanewa, the uppermost reservoir in the system, and in the Cowlitz and Cispus Rivers. Our goal was to estimate the proportion of tagged fish that fell back downstream of Cowlitz Falls Dam before the spawning period and to determine the proportion that were present in the Cowlitz and Cispus Rivers during the spawning period. Fallback is important because Cowlitz Falls Dam does not have upstream fish passage, so fish that pass the dam are unable to move back upstream and spawn. A total of 2,051 steelhead and salmon were tagged for the study, which was conducted during 2005–09 and 2012, and 173 (8.4 percent) of these regurgitated their transmitter prior to, or shortly after release. Once these fish were removed from the dataset, the final number of fish that was monitored totaled 1,878 fish, including 647 steelhead, 770 Chinook salmon, and 461 coho salmon. Hatchery-origin (HOR) and natural-origin (NOR) steelhead, Chinook salmon, and coho salmon behaved differently following release into Lake Scanewa. Detection records showed that the percentage of HOR fish that moved upstream and entered the Cowlitz River or Cispus River after release was relatively low (steelhead = 38 percent; Chinook salmon = 67 percent; coho salmon = 41 percent) compared to NOR fish (steelhead = 84 percent; Chinook salmon = 82 percent; coho salmon = 76 percent). The elapsed time from release to river entry was significantly lower for NOR fish than for HOR fish for all three species. Tagged fish entered the Cowlitz River in greater proportions than the Cispus River, regardless of origin. We found that 23–47 percent of the HOR fish entered the Cowlitz River and 12–38 percent entered the Cispus River. Similarly, 67–70 percent of the NOR fish entered the Cowlitz River and 38–66 percent entered the Cispus River. These behavioral differences translated into similar differences in fates during the spawning periods as higher percentages of tagged fish were assigned Cowlitz River fates than Cispus River fates. Fallback rates were affected by fish origin and release site. Overall, 12 percent of steelhead, 19 percent of Chinook salmon, and 8 percent of coho salmon fell back downstream of Cowlitz Falls Dam prior to spawning. Fallback rates were lower for fish that were released in the Cowlitz River or the Cispus River than for reservoir-released fish, but statistical comparisons were not robust because of small sample sizes at the river release sites. Fallback rates for fish released at the river release sites were 10 percent lower for steelhead, 4 percent lower for Chinook salmon, and 9 percent lower for coho salmon than for reservoir-released fish. However, fallback rates also were different between HOR and NOR fish. Fallback rates were significantly higher for HOR reservoir-released fish than for NOR reservoir-released fish. This study provided data that were insightful for understanding behavior and movement patterns in the upper Cowlitz River Basin and yielded estimates of fallback rates and fish fates that may be useful for fishery managers in the years to come. Studies from other systems have shown that factors such as prespawn mortality and fallback have resulted in substantial losses to spawning populations where trap-and-haul programs are being used as a restoration tool. Future research in the upper Cowlitz River Basin may use additional telemetry studies, genetic analyses, and spawning ground surveys to provide answers for new questions and to continue to monitor the progress of the reintroduction effort.

Washington↗

Hydrologic and water-quality characteristics for Bear Creek near Silver Hill, Arkansas, and selected Buffalo River sites, 1999-2004

The purpose of this report is to describe and compare the hydrologic and water-quality characteristics of Bear Creek near Silver Hill, Arkansas, to two sites on the Buffalo River upstream from the confluence of Bear Creek, to a site on Calf Creek, a smaller tributary to the Buffalo River, to selected undeveloped sites across the Nation, and to a developed site in Arkansas. A better understanding of the hydrology and water quality of Bear Creek is of interest to many, including the National Park Service, which administers the Buffalo National River, to evaluate its effects on the hydrology and water quality of the Buffalo River. The streamflow at Bear Creek near Silver Hill varied seasonally and annually from January 1999 to March 2004. The mean annual streamflow at Bear Creek for calendar years 1999 to 2003 was 86.0 cubic feet per second. The highest annual mean streamflow occurred in 2002 (158 cubic feet per second) and the lowest annual mean streamflow occurred in 1999 (56.4 cubic feet per second). The mean annual streamflow for calendar years 1999 to 2003 at the Buffalo River near Boxley and Buffalo River near St. Joe was 102 and 881 cubic feet per second, respectively. Concentrations of nitrogen measured for Bear Creek generally were greater than concentrations measured at the two Buffalo River sites and were similar to concentrations measured at Calf Creek. Concentrations of phosphorus measured at Bear Creek generally were greater than concentrations measured at the two Buffalo River sites and were similar to concentrations measured at Calf Creek. Fecal indicator bacteria concentrations generally were greater at Bear Creek than concentrations measured at the Buffalo River and similar to concentrations at Calf Creek. Bear Creek had significantly greater suspended-sediment concentrations than the Buffalo River near Boxley and the Buffalo River near St. Joe and similar concentrations to Calf Creek. Nutrients, dissolved organic carbon, and suspended-sediment loads at Bear Creek and two Buffalo River sites varied because of differences in land use and contributing drainage area for each site. In general, the Buffalo River near St. Joe had the greatest annual loads of nutrients, dissolved organic carbon, and suspended sediment. The Buffalo River near Boxley had the least annual nutrient and suspended-sediment loads amongthe three sites. Buffalo River near Boxley had lesser annual loads than the other two sites probably because of the higher percentage of forested land in the basin and smaller contributing drainage area. Mean annual nutrient, dissolved organic carbon, and suspended- sediment yields computed for Bear Creek were greater than yields computed for both of the Buffalo River sites. Bear Creek had greater median annual nutrient yields than selected undeveloped basins across the Nation and less median annual nutrient yields than the Illinois River south of Siloam Springs, Arkansas, which is representative of a developed basin. Bear Creek had greater median annual flow-weighted nutrient concentrations than the Buffalo River near St. Joe, the Buffalo River near Boxley, and selected undeveloped sites across the Nation. Bear Creek had less median flow-weighted nutrient concentrations than the Illinois River.

Scientific Investigations Report↗

Biomonitoring of Environmental Status and Trends (BEST) Program: Environmental contaminants, health indicators, and reproductive biomarkers in fish from the Colorado River basin

Seven fish species were collected from 14 sites on rivers in the Colorado River Basin (CDRB) from August to October 2003. Spatial trends in the concentrations of accumulative contaminants were documented and contaminant effects on the fish were assessed. Sites were located on the mainstem of the Colorado River and on the Yampa, Green, Gunnison, San Juan, and Gila Rivers. Common carp (Cyprinus carpio), black bass (Micropterus sp.), and channel catfish (Ictalurus punctatus) were the targeted species. Fish were field-examined for external and internal anomalies, selected organs were weighed to compute somatic indices, and tissue and fluid samples were preserved for fish health and reproductive biomarker analyses. Composite samples of whole fish, grouped by species and gender, from each site were analyzed for organochlorine and elemental contaminants using performance-based and instrumental methods. 2,3,7,8-tetrachlorodibenzo-p-dioxin-like activity (TCDD-EQ) was measured using the H4IIE rat hepatoma cell bioassay. Selenium (Se) and mercury (Hg) concentrations were elevated throughout the CDRB, and pesticides concentrations were greatest in fish from agricultural areas in the Lower Colorado River and Gila River. Selenium concentrations exceeded toxicity thresholds for fish (>1.0 ?g/g ww) at all sites except from the Gila River at Hayden, Arizona. Mercury concentrations were elevated (>0.1 ?g/g ww) in fish from the Yampa River at Lay, Colorado; the Green River at Ouray National Wildlife Refuge (NWR), Utah and San Rafael, Utah; the San Juan River at Hogback Diversion, New Mexico; and the Colorado River at Gold Bar Canyon, Utah, Needles, California, and Imperial Dam, Arizona. Concentrations of p,p'-DDE were relatively high in fish from Arlington, Arizona (>1.0 ?g/g ww) and Phoenix, Arizona (>0.5 ?g/g ww). Concentrations of other banned pesticides including toxaphene, total chlordanes, and dieldrin were also greatest at these two sites but did not exceed toxicity thresholds. Current-use or unlisted pesticides such as dacthal, endosulfan, '-HCH, and methoxychlor were also greatest in fish from Gila River. Total polychlorinated biphenyls (PCBs; >0.11 ?g/g ww) and TCDD-EQs (>5 pg/g ww) exceeded wildlife guidelines in fish from the Gila River at Phoenix, Arizona. Hepatic ethoxyresorufin O-deethylase (EROD) activity was also relatively high in carp from the Gila River at Phoenix, Arizona and in bass from the Green River at Ouray NWR, Utah. Altered biomarkers were noted in fish throughout the CDRB. Fish from some stations responded to chronic contaminant exposure as indicated by fish health and reproductive biomarker results. Multiple fish health indicators including altered body and organ weights and high health assessment index scores may be associated with elevated Se concentrations in fish from the Colorado River at Loma, Colorado and Needles, California. Although grossly visible external or internal lesions were found on most fish from some sites, histopathological analysis determined many of these to be inflammatory responses associated with parasites. Edema, exophthalmos, and cataracts were noted in fish from sites with elevated Se concentrations. Reproductive biomarkers including gonad development and maturation, vitellogenin concentrations, and steroid hormone concentrations were anomalous in fish from the Gila River at Hayden and Phoenix, Arizona. In addition, intersex fish were found at seven of 14 sites. The intersex condition was identified in smallmouth bass (M. dolomieu), largemouth bass (M. salmoides), channel catfish, and carp and may indicate exposure to endocrine disrupting compounds. Seven of ten male smallmouth bass from the Yampa River at Lay, Colorado were intersex. Male carp, bass, and channel catfish with low concentrations of vitellogenin were common in the CDRB. Comparatively high vitellogenin concentrations (>0.2 mg/mL) were measured in male fish from the Green River at Ouray NWR, Utah and the Colorado River at Im

Scientific Investigations Report↗

Surface-water salinity in the Gunnison River Basin, Colorado, water years 1989 through 2007

Elevated levels of dissolved solids in water (salinity) can result in numerous and costly issues for agricultural, industrial, and municipal water users. The Colorado River Basin Salinity Control Act of 1974 (Public Law 93-320) authorized planning and construction of salinity-control projects in the Colorado River Basin. One of the first projects was the Lower Gunnison Unit, a project to mitigate salinity in the Lower Gunnison and Uncompahgre River Basins. In cooperation with the Bureau of Reclamation (USBR), the U.S. Geological Survey conducted a study to quantify changes in salinity in the Gunnison River Basin. Trends in salinity concentration and load during the period water years (WY) 1989 through 2004 (1989-2004) were determined for 15 selected streamflow-gaging stations in the Gunnison River Basin. Additionally, trends in salinity concentration and load during the period WY1989 through 2007 (1989-2007) were determined for 5 of the 15 sites for which sufficient data were available. Trend results also were used to identify regions in the Lower Gunnison River Basin (downstream from the Gunnison Tunnel) where the largest changes in salinity loads occur. Additional sources of salinity, including residential development (urbanization), changes in land cover, and natural sources, were estimated within the context of the trend results. The trend results and salinity loads estimated from trends testing also were compared to USBR and Natural Resources Conservation Service (NRCS) estimates of off-farm and on-farm salinity reduction from salinity-control projects in the basin. Finally, salinity from six additional sites in basins that are not affected by irrigated agriculture or urbanization was monitored from WY 2008 to 2010 to quantify what portion of salinity may be from nonagricultural or natural sources. In the Upper Gunnison area, which refers to Gunnison River Basin above the site located on the Gunnison River below the Gunnison Tunnel, estimated mean annual salinity load was 110,000 tons during WY 1989-2004. Analysis of both study periods (WY 1989-2004 and WY 1989-2007) showed an initial decrease in salinity load with a minimum in 1997. The net change over either study period was only significant during WY 1989-2007. Salinity load significantly decreased at the Gunnison River near Delta by 179,000 tons during WY 1989-2004. Just downstream, the Uncompahgre River enters the Gunnison River where there also was a highly significant decrease in salinity load of 55,500 tons. The site that is located at the mouth of the study area is the Gunnison River near Grand Junction where the decrease was the largest. Salinity loads decreased by 247,000 tons during WY 1989-2004 at this site though the decrease attenuated by 2007 and the net change was a decrease of 207,000 tons. The trend results presented in this study indicate that the effect of urbanization on salinity loads is difficult to discern from the effects of irrigated agriculture and that natural sources contribute a fraction of the total salinity load for the entire basin. Based on the calculated yields and geology, 23-63 percent of the estimated annual salinity load was from natural sources at the Gunnison River near Grand Junction during WY 1989-2007. The largest changes in salinity load occurred at the Gunnison River near Grand Junction as well as the two sites located in Delta: the Gunnison River at Delta and the Uncompahgre River at Delta. Those three sites, especially the two sites at Delta, were the most affected by irrigated agriculture, which was observed in the estimated mean annual loads. Irrigated acreage, especially acreage underlain by Mancos Shale, is the target of salinity-control projects intended to decrease salinity loads. The NRCS and the USBR have done the majority of salinity control work in the Lower Gunnison area of the Gunnison River Basin, and the focus has been in the Uncompahgre River Basin and in portions of the Lower Gunnison River Basin (downstream from the Gunnison Tunnel). According to the estimates from the USBR and NRCS, salinity-control projects may be responsible for a reduction of 117,300 tons of salinity as of 2004 and 142,000 tons as of 2007 at the Gunnison River near Grand Junction, Colo. (streamflow-gaging station 09152500). USBR and NRCS estimates account for all but 130,000 tons in 2004 and 65,000 tons in 2007 of salinity load reduction. The additional reduction could be a reduction in natural salt loading to the streams because of land-cover changes during the study period. It is possible also that the USBR and NRCS have underestimated changes in salinity loads as a result of the implementation of salinity-control projects.

Colorado↗