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USGS2021

A novel framework to predict relative habitat selection in aquatic systems: Applying machine learning and resource selection functions to acoustic telemetry data from multiple shark species

Resource selection functions (RSFs) have been widely applied to animal tracking data to examine relative habitat selection and to help guide management and conservation strategies. While readily used in terrestrial ecology, RSFs have yet to be extensively used within marine systems. As acoustic telemetry continues to be a pervasive approach within marine environments, incorporation of RSFs can provide new insights to help prioritize habitat protection and restoration to meet conservation goals. To overcome statistical hurdles and achieve high prediction accuracy, machine learning algorithms could be paired with RSFs to predict relative habitat selection for a species within and even outside the monitoring range of acoustic receiver arrays, making this a valuable tool for marine ecologists and resource managers. Here, we apply RSFs using machine learning to an acoustic telemetry dataset of four shark species to explore and predict species-specific habitat selection within a marine protected area. In addition, we also apply this RSF-machine learning approach to investigate predator-prey relationships by comparing and averaging tiger shark relative selection values with the relative selection values derived for eight potential prey-species. We provide methodological considerations along with a framework and flexible approach to apply RSFs with machine learning algorithms to acoustic telemetry data and suggest marine ecologists and resource managers consider adopting such tools to help guide both conservation and management strategies.

Buck Island Reef National Monument, St Croix↗

USGS2023

One byte at a time: Gathering best practices, guidelines, and resources for data standards to support ocean exploration and characterization

Initiated through Presidential direction and now codified, the National Ocean Mapping, Exploration, and Characterization (NOMEC) Council comprises leaders from U.S. federal agencies with a shared goal of mapping all waters of the United States and exploring and characterizing priority areas. The NOMEC Council’s two Interagency Working Groups, Ocean and Coastal Mapping (IWG-OCM) and Ocean Exploration and Characterization (IWG-OEC), both achieved major milestones recently with the 2023 release of the Draft Standard Ocean Mapping Protocols (SOMP) and the 2022 publication of the National Priorities for Ocean Exploration and Characterization. Building on this groundwork, the IWG-OEC is now looking to define and share best practices, guidelines, and resources for ocean exploration and characterization with the long-term goal of increasing community wide standardization to help achieve consistent common practices. First, the IWG-OEC plans to compile federal agency resources and share them in a newly developed online resource repository. The next phase is for the IWG-OEC to create opportunities for non-federal sectors to provide input on developing and populating this repository with additional content (existing standards and protocols, best practice and guidelines documents, etc.). After experts representing multiple sectors are identified, a series of results-oriented workshops are planned to provide input on all aspects of the data, products, and services from exploration and characterization. Finally, the IWG-OEC plans to widely share the online repository of best practices and standard operating procedures. A systematic, transparent, and collaborative process to share standards and protocols can help to enhance the interoperability of data and inform new lines of inquiry, discovery, research, and innovation.

Frontiers in Marine Science↗

USGS2012

Effects of resource chemistry on the composition and function of stream hyporheic biofilms.

Fluvial ecosystems process large quantities of dissolved organic matter as it moves from the headwater streams to the sea. In particular, hyporheic sediments are centers of high biogeochemical reactivity due to their elevated residence time and high microbial biomass and activity. However, the interaction between organic matter and microbial dynamics in the hyporheic zone remains poorly understood. We evaluated how variance in resource chemistry affected the microbial community and its associated activity in experimentally grown hyporheic biofilms. To do this we fed beech leaf leachates that differed in chemical composition to a series of bioreactors filled with sediment from a sub-alpine stream. Differences in resource chemistry resulted in differences in diversity and phylogenetic origin of microbial proteins, enzyme activity, and microbial biomass stoichiometry. Specifically, increased lignin, phenolics, and manganese in a single leachate resulted in increased phenoloxidase and peroxidase activity, elevated microbial biomass carbon:nitrogen ratio, and a greater proportion of proteins of Betaproteobacteria origin. We used this model system to attempt to link microbial form (community composition and metaproteome) with function (enzyme activity) in order to better understand the mechanisms that link resource heterogeneity to ecosystem function in stream ecosystems.

Frontiers in Microbiology↗

USGS2026

Multiscale resource selection for a reintroduced elk population

Patterns of resource selection are driven by the decision-making processes of animals occurring at multiple scales from where to establish a home range (i.e., second order selection) to which resource patches to use within the home range (i.e., third order selection). Elk ( Cervus canadensis ) were reintroduced to southwestern Virginia, USA, from 2012 to 2014 following successful translocations onto reclaimed surface coal mines in the region. We sought to understand how elk have acclimated following their translocation using location data from GPS-collared adult female elk ( n = 33) collected from 2019 to 2022 along with remotely sensed terrain and land cover data. We utilized continuous-time movement models paired with generalized linear mixed-effects modeling to describe seasonal resource selection at second and third orders. At both scales of selection and throughout the year, female elk selected reclaimed surface mines, conifer forests, ridgetops, and areas with lower terrain roughness, while avoiding mixed hardwood and oak ( Quercus spp.) forests. Unmined open land was only selected at the third order during periods of forage scarcity (i.e., winter) and increased metabolic requirements (i.e., late gestation). Although surface coal mining leaves legacy environmental impacts on the landscape, management of these sites provides benefits to elk and maintains open habitat that is otherwise limited.

Virginia↗

USGS2022

Development and description of a composite hydrogeologic framework for inclusion in a geoenvironmental assessment of undiscovered uranium resources in Pliocene- to Pleistocene-age geologic units of the Texas Coastal Plain

A previously completed mineral resources assessment of the Texas Coastal Plain indicated the potential for the future discovery of uranium resources. Geoenvironmental assessments that include the hydrogeologic framework can be used as a tool to understand the potential effects of mining operations. The hydrogeologic framework for this study focused on the composite hydrogeologic unit of the tract permissive for the occurrence of uranium consisting of the upper part of the Miocene-age Fleming Formation/Lagarto Clay, Pliocene-age Goliad and Pleistocene-age Willis Sands, Pleistocene-age Lissie and Beaumont Formations, and Holocene-age alluvial sediments (fluvial alluvium and eolian sand deposits). This composite hydrogeologic unit, which contains the Chicot and Evangeline aquifers of the Gulf Coast aquifer system, is intended for inclusion in a regional-scale geoenvironmental assessment of as yet undiscovered uranium resources. This article provides (1) a brief literature review describing the geologic and hydrogeologic settings, (2) the methodology used to develop a composite hydrogeologic framework, and (3) descriptions and maps of the land-surface altitude, composite hydrogeologic unit base and midpoint depth, water-level altitude, depth of water, unsaturated and saturated zone thickness, and transmissivity and hydraulic conductivity. A composite hydrogeologic unit, created by combining geologic and hydrogeologic data and maps for individual geologic and hydrogeologic units, is intended for use as a tool in a geoenvironmental assessment to evaluate potential contaminant migration through various avenues. Potential applications include using the hydrogeologic framework as an input into a geoenvironmental assessment to help estimate the potential for (1) runoff of contaminants into surface water, (2) infiltration of contaminants into the groundwater (aquifers), or (3) movement of contaminants from the mining area through wind, groundwater-flow, or streamflow in a given permissive tract. The procedures outlined in this paper also provide a method for developing hydrogeologic frameworks that can be applied in other areas where mining may occur.

Texas↗

USGS2023

Integration of distributed streamflow measurement metadata for improved water resource decision-making

Streamflow data are critical for monitoring and managing water resources, yet there are significant spatial gaps in our federal monitoring networks with biases toward large perennial rivers. In some cases, streamflow monitoring exists in these spatial gaps, but information about these monitoring locations is challenging to obtain. Here, we present a streamflow catalog for the United States Pacific Northwest that includes current and historical streamflow monitoring location information obtained from 32 organizations (other than the U.S. Geological Survey), which includes 2661 continuous streamflow gaging locations (22% are currently active) and 30,557 discrete streamflow measurements. A stakeholder advisory board with representatives from organizations that operate streamflow monitoring networks identified metadata requirements and provided feedback on the Streamflow Data Catalog user interface. Engagement with the water resources community through this effort highlighted challenges that water professionals face in collecting and managing streamflow data so that data are findable, accessible, interoperable, and reusable (FAIR). Over 60% of the streamflow monitoring locations in the Streamflow Data Catalog are not available online and are thus not findable through web search engines. Providing organizations technical assistance with standard measurement procedures, metadata collection, and web accessibility could substantially increase the availability and utility of streamflow information to water resources communities.

Water↗

USGS2021

Mid-latitude ice on Mars: A science target for planetary climate histories and an exploration target for in situ resources

In the last decade, aided by the high-resolution data and long-term monitoring by NASA’s Mars Reconnaissance Orbiter (MRO) and other spacecraft, extensive evidence has emerged supporting the presence of abundant H2O ground ice throughout much of the mid-latitudes of Mars. Growing evidence indicates that much of this ice is relatively pure, exists within a few meters of the surface, and reaches lower latitudes than previously thought, potentially providing an accessible record of the recent climate and a large in situ resource for future human exploration of Mars. We are reaching the limits of currently available datasets, however, just as we are starting to unlock the climate record and determine the water resources contained within the Martian mid-latitudes. A comprehensive understanding of the nature of this ice would significantly enhance our understanding of Mars’ climate history and total water budget, as well as the effects of orbital/axial forcing on volatiles. In this regard, Mars is a testbed for comparative planetary climate studies, including for exoplanets; these studies are particularly valuable because Mars has many similarities to Earth but lacks the complicating effects of oceans and a biosphere, such that orbital/axial forcing dominates climate variability. Quantifying the volumes, distribution, and properties of the water ice are crucial for addressing two overarching questions in the next decade: 1. What climate record is preserved in mid-latitude ice deposits on Mars? 2. How accessible is the ice as a resource for future exploration? New missions will enable us to capitalize on the major discoveries of the last decade and take the next giant leap in the upcoming decade to address these questions.

Bulletin of the AAS↗

USGS2015

Land-use impacts on water resources and protected areas: applications of state-and-transition simulation modeling of future scenarios

Human land use will increasingly contribute to habitat loss and water shortages in California, given future population projections and associated land-use demand. Understanding how land-use change may impact future water use and where existing protected areas may be threatened by land-use conversion will be important if effective, sustainable management approaches are to be implemented. We used a state-and-transition simulation modeling (STSM) framework to simulate spatially-explicit (1 km 2 ) historical (1992-2010) and future (2011-2060) land-use change for 52 California counties within Mediterranean California ecoregions. Historical land use and land cover (LULC) change estimates were derived from the Farmland Mapping and Monitoring Program dataset and attributed with county-level agricultural water-use data from the California Department of Water Resources. Five future alternative land-use scenarios were developed and modeled using the historical land-use change estimates and land-use projections based on the Intergovernmental Panel on Climate Change's Special Report on Emission Scenarios A2 and B1 scenarios. Spatial land-use transition outputs across scenarios were combined to reveal scenario agreement and a land conversion threat index was developed to evaluate vulnerability of existing protected areas to proximal land conversion. By 2060, highest LULC conversion threats were projected to impact nearly 10,500 km 2 of land area within 10 km of a protected area boundary and over 18,000 km 2 of land area within essential habitat connectivity areas. Agricultural water use declined across all scenarios perpetuating historical drought-related land use from 2008-2010 and trends of annual cropland conversion into perennial woody crops. STSM is useful in analyzing land-use related impacts on water resource use as well as potential threats to existing protected land. Exploring a range of alternative, yet plausible, LULC change impacts will help to better inform resource management and mitigation strategies.

California↗

USGS2020

Book review: Rare earth element resources: Indian context

Rare Earth Element Resources: Indian Context. Yamuna Singh. 2020. ISBN 978-3-030-41353-8. Society of Earth Scientists Series, Springer, Cham, Switzerland, 269 Pp. Hardcover and eBook. €93.08 Rare Earth Element Resources: Indian Context by Yamuna Singh provides an excellent review of rare earth element (REE) deposits and occurrences in India with an emphasis on placer deposits, India’s most notable REE resource. This 269-page, 10-chapter book not only describes REE occurrences but also provides introductory material on REE geochemistry and discusses other potential industrial sources including recycling, fly ash, and mine waste products. The book concludes with a chapter on the state of the REE industry in India and discusses possible future trends and needs. Anyone interested in exploring for REEs in India will find this book from Springer’s Society of Earth Scientists series a useful reference.

Economic Geology↗

USGS2020

Vulnerability of resource-users in Louisiana’s oyster fishery to environmental hazards

Knowledge of vulnerability provides the foundation for developing actions that minimize impacts on people while maximizing the sustainability of ecosystem goods and services. As a result, it is becoming increasingly important to determine how resource-dependent people are vulnerable to environmental hazards. This is particularly true in coastal Louisiana where the current era of rapid land loss has the potential to undermine oyster fisheries. Yet, little is known about how such environmental change might differentially impact resource-users and stakeholders. We examined social components of vulnerability to environmental hazards using indicators of susceptibility and adaptive capacity within the oyster fishery of Terrebonne Parish, Louisiana. Specifically, we used structured interviews to compare three resource-user roles: oyster fishers, oyster fishers/lease owners, and oyster lease owners only. Results indicated that oyster fishers/lease owners were highly dependent and thus susceptible to changes in the fishery due to high levels of occupational identity. The same people, however, were the most adaptable to change, which was reflected in their willingness to learn about new practices and evolve over time; higher susceptibility in this group was offset by an increased ability to adapt, cope, and respond to changes in the environment. In contrast to these findings, oyster fishers that did not own any portion of a lease or business in which they operated were bad at coping with change and frequently held negative or fatalistic views on financial planning. These attributes made them the most vulnerable to environmental hazards. Overall, the most vulnerable participants in the Terrebonne Parish oyster fishery were those with low to moderate levels of personal and financial buffers and trust, coupled with high occupational identity and a low motivation to change. Local policy actions that target these attributes are likely to be the best entry points to reducing vulnerability of stakeholders to hazards.

Louisianna↗

USGS2011

Nesting success and resource selection of greater sage grouse in South Dakota: Chapter 8

Declines of Greater Sage-Grouse ( Centrocercus urophasianus ) in South Dakota are a concern because further population declines may lead to isolation from populations in Wyoming and Montana. Furthermore, little information exists about reproductive ecology and resource selection of sage grouse on the eastern edge of their distribution. We investigated Greater Sage-Grouse nesting success and resource selection in South Dakota during 2006-2007. Radiomarked females were tracked to estimate nesting rates, nest success, and habitat resources selected for nesting. Nest initiation was 98.0%, with a maximum likelihood estimate of nest success of 45.6 ± 5.3%. Females selected nest sites that had greater sagebrush canopy cover and visual obstruction of the nest bowl compared to random sites. Nest survival models indicated that taller grass surrounding nests increased nest survival. Tall grass may supplement the low sagebrush cover in this area in providing suitable nest sites for Greater Sage-Grouse. Land managers on the eastern edge of Greater Sage-Grouse range could focus on increasing sagebrush density while maintaining tall grass by developing range management practices that accomplish this goal. To achieve nest survival rates similar to other populations, predictions from our models suggest 26 cm grass height would result in approximately 50% nest survival. Optimal conditions could be accomplished by adjusting livestock grazing systems and stocking rates.

South Dakota↗

USGS1991

Techniques and strategies for data integration in mineral resource assessment

The Geologic and the National Mapping divisions of the U.S. Geological Survey have been involved formally in cooperative research and development of computer-based geographic information systems (GISs) applied to mineral-resource assessment objectives since 1982. Experience in the Conterminous United States Mineral Assessment Program (CUSMAP) projects including the Rolla, Missouri; Dillon, Montana; Butte, Montana; and Tonopah, Nevada 1?? ?? 2?? quadrangles, has resulted in the definition of processing requirements for geographically and mineral-resource data that are common to these studies. The diverse formats of data sets collected and compiled for regional mineral-resource assessments necessitate capabilities for digitally encoding and entering data into appropriate tabular, vector, and raster subsystems of the GIS. Although many of the required data sets are either available or can be provided in a digital format suitable for direct entry, their utility is largely dependent on the original intent and consequent preprocessing of the data. In this respect, special care must be taken to ensure the digital data type, encoding, and format will meet assessment objectives. Data processing within the GIS is directed primarily toward the development and application of models that can be used to describe spatially geological, geophysical, and geochemical environments either known or inferred to be associated with specific types of mineral deposits. Consequently, capabilities to analyze spatially, aggregate, and display relations between data sets are principal processing requirements. To facilitate the development of these models within the GIS, interfaces must be developed among vector-, raster-, and tabular-based processing subsystems to reformat resident data sets for comparative analyses and multivariate display of relations.

Conference Paper↗

USGS1993

Geologic assessments and characterization of marine sand resources - Gulf of Mexico region

The U.S. Geological Survey conducts geologic surveys and research in marine areas of the United States and its territories and possessions. An objective in some of the investigations is locating and evaluating marine sand and gravel resources and interpretation of the origins of the sand body deposits. Results from such studies over the past 30 years show that many extremely large deposits are located close to expanding metropolitan areas, which have a need for aggregate materials for construction, and near-developed coastal areas, where beach replenishment may be used to mitigate coastal erosion. The Gulf of Mexico continental shelf from the Florida Peninsula to the Mexico border is an enormous area, but little attention has been directed on sand and gravel resources. Based on limited surveys, the total sand and gravel resources for the entire Gulf of Mexico is estimated to be 269 billion cubic meters. However, the sand tends to be fine-grained and is often mixed with mud; gravel deposits, except for shell, are mostly nonexistent.

Conference Paper↗

USGS1998

Oyster resource zones of the Barataria and Terrebonne estuaries of Louisiana

A 1:100,000 scale map delineating the subtidal oyster resource zones within the Barataria and Terrebonne estuaries was developed. Strategies to accomplish the task included interviews with Louisiana oystermen and state biologists to develop a draft map, field sampling to document oyster (Crassostrea virginica), Dermo (Perkinsus marinus), and oyster drill (Stramonita haemastoma) abundances, use of historical salinity data to aid in map verification, and public meetings to allow comment on a draft before final map preparation. Four oyster resource zones were delineated on the final map: a dry zone where subtidal oysters may be found when salinities increase, a wet zone where subtidal oysters may be found when salinities are suppressed, a wet-dry zone where subtidal oysters may be consistently found due to favorable salinities, and a high-salinity zone where natural oyster populations are predominantly found in intertidal and shallow waters. The dry zone is largely coincident with the brackish-marsh habitat, with some intermediate-type marsh. The wet-dry zone is found at the interface of the brackish and saline marshes, but extends further seaward than up-estuary. The wet zone and the high salinity zones are areas of mostly open water fringed by salt marshes. The dry zone encompasses 91,775 hectares, of which 48,788 hectares are water (53%). The wet zone encompasses 83,525 hectares, of which 66,958 hectares are water (80%). The wet-dry zone encompasses 171,893 hectares, of which 104,733 hectares are water (61%). The high salinity zone encompasses 125,705 hectares, of which 113,369 hectares are water (90%). There is a clear trend of increasing water habitat in the four zones over the past 30 years, and oysters are now cultivated on bottoms that were once marsh. The map should be useful in managing the effects upon oysters of freshwater diversions into the estuaries. It provides a pre-diversion record of the location of oyster resource zones and should prove helpful in the seaward relocation of oysters leases.

Journal of Shellfish Research↗

USGS2003

U.S. Geological Survey resource assessment of selected Tertiary coal zones in Wyoming, Montana and North Dakota

In 1999, 1 Gt (1.1 billion st) of coal was produced in the United States. Of this total, 37% was produced in Wyoming, Montana and North Dakota. Coals of Tertiary age from these states typically have low ash contents. Most of these coals have sulfur contents that are in compliance with Clean Air Act standards and most have low concentrations of the trace elements that are of environmental concern. The U.S. Geological Survey (USGS) National Coal Resource Assessment for these states includes geologic, stratigraphic, palynologic and geochemical studies and resource calculations for major Tertiary coal zones in the Powder River, Williston, Greater Green River, Hanna and Carbon Basins. Calculated resources are 595 Gt (655 billion st). Results of the study are available in a USGS Professional Paper and a USGS Open-File Report, both in CD-ROM format.

Mining Engineering↗

USGS2006

Afghan resource assessment fed positive outlook for exploration

Crude oil, natural gas and natural gas liquids/condensate resources are important for the redevelopment of Afghanistan's infrastructure. Improved living and economic conditions in Afghanistan require increasing the availability of energy particularly by exploitation of Afghanistan's petroleum resources. The four total petroleum systems are subdivided into units with homogeneous geologic traits and exploration efforts that include sufficiently homogeneous field-size populations for resource assessment. The greatest volume of undiscovered crude oil is estimated to be in the Afghanistan Eastern Suprasalt Thrusts and Folds Assessment Unit. The greatest volume of undiscovered natural gas is estimated to be in the Afghanistan Jurassic Evaporite Basin Subsalt Carbonates Assessment Unit.

Oil & Gas Journal↗

USGS2005

USGS assessment of oil and gas resource potential of the San Joaquin Basin, California

The assessment of oil and gas resource potential of the San Joaquin Basin, California, by the U.S. Geological Survey, is discussed. Two categories of future additions to reserves were evaluated, first was resource in undiscovered accumulations and second was growth of reserves in already discovered accumulations. The mean estimate of undiscovered oil resources is 393 barrels. The greatest potential for oil accumulations larger than 10 million barrels is probably in Miocene and Eocene reservoirs of the westside of the basin and in deep basin south of the Bakersfield Arch.

Conference Paper↗

USGS2007

The USGS national geothermal resource assessment: An update

The U. S. Geological Survey (USGS) is working with the Department of Energy's (DOE) Geothermal Technologies Program and other geothermal organizations on a three-year effort to produce an updated assessment of available geothermal resources. The new assessment will introduce significant changes in the models for geothermal energy recovery factors, estimates of reservoir volumes, and limits to temperatures and depths for electric power production. It will also include the potential impact of evolving Enhanced Geothermal Systems (EGS) technology. An important focus in the assessment project is on the development of geothermal resource models consistent with the production histories and observed characteristics of exploited geothermal fields. New models for the recovery of heat from heterogeneous, fractured reservoirs provide a physically realistic basis for evaluating the production potential of both natural geothermal reservoirs and reservoirs that may be created through the application of EGS technology. Project investigators have also made substantial progress studying geothermal systems and the factors responsible for their formation through studies in the Great Basin-Modoc Plateau region, Coso, Long Valley, the Imperial Valley and central Alaska, Project personnel are also entering the supporting data and resulting analyses into geospatial databases that will be produced as part of the resource assessment.

Conference Paper↗