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Reference intervals and physiologic alterations in hematologic and biochemical values of free-ranging desert tortoises in the Mojave Desert

Desert tortoise ( Gopherus agassizii ) populations have experienced precipitous declines resulting from the cumulative impact of habitat loss, and human and disease-related mortality. Evaluation of hematologic and biochemical responses of desert tortoises to physiologic and environmental factors can facilitate the assessment of stress and disease in tortoises and contribute to management decisions and population recovery. The goal of this study was to obtain and analyze clinical laboratory data from free-ranging desert tortoises at three sites in the Mojave Desert (California, USA) between October 1990 and October 1995, to establish reference intervals, and to develop guidelines for the interpretation of laboratory data under a variety of environmental and physiologic conditions. Body weight, carapace length, and venous blood samples for a complete blood count and clinical chemistry profile were obtained from 98 clinically healthy adult desert tortoises of both sexes at the Desert Tortoise Research Natural area (western Mojave), Goffs (eastern Mojave) and Ivanpah Valley (northeastern Mojave). Samples were obtained four times per year, in winter (February/March), spring (May/June), summer (July/August), and fall (October). Years of near-, above- and below-average rainfall were represented in the 5 yr period. Minimum, maximum and median values, and central 95 percentiles were used as reference intervals and measures of central tendency for tortoises at each site and/or season. Data were analyzed using repeated measures analysis of variance for significant ( P < 0.01) variation on the basis of sex, site, season, and interactions between these variables. Significant sex differences were observed for packed cell volume, hemoglobin concentration, aspartate transaminase activity, and cholesterol, triglyceride, calcium, and phosphorus concentrations. Marked seasonal variation was observed in most parameters in conjunction with reproductive cycle, hibernation, or seasonal rainfall. Year-to-year differences and long-term alterations primarily reflected winter rainfall amounts. Site differences were minimal, and largely reflected geographic differences in precipitation patterns, such that results from these studies can be applied to other tortoise populations in environments with known rainfall and forage availability patterns.

Journal of Wildlife Diseases↗

Cape Romain partnership for coastal protection

This final report summarizes activities, outcomes, and lessons learned from a 3-year project titled “Climate Change Adaptation for Coastal National Wildlife Refuges” with the Cape Romain National Wildlife Refuge (NWR) and local partners in the surrounding South Carolina Lowcountry. The Lowcountry is classified as the 10-county area encompassing the coastal plain of South Carolina (this report specifically focuses on Berkeley, Charleston, and Georgetown Counties). The goals of this work, sponsored by the U.S. Geological Survey’s Southeast Climate Adaptation Science Center (SECASC), were to foster active engagement with stakeholders; to develop a comprehensive definition of adaptation problems faced by agencies, organizations, and individuals near the Cape Romain NWR that accounts for global change, local values, knowledge and perceptions; and to encourage social learning and building of effective networks and trust across South Carolina Lowcountry organizations and individuals. Although project scoping began at the scale of the Atlantic seaboard, by engaging with NWRs from Massachusetts to Florida, participating refuge personnel eventually selected the Cape Romain NWR to serve as a case study for testing our goals. The Cape Romain Partnership for Coastal Conservation was established to address global change impacts at a regional level and includes representation from Federal and State resource agencies, local conservation nongovernmental organizations, and organizations representing underserved community interests. Research topics, originating from discussions with Cape Romain Partnership for Coastal Conservation members, focused on quantifying key drivers of change including localized sea-level rise (SLR) predictions, estimates of coastal hurricane inundation as amplified by SLR, and urban growth trends and forecasts. These key drivers provided a foundation to engage stakeholders in planning exercises to begin a process of collective understanding and collaborative decision making. The goal of this process was to develop collective strategies of adaptation to enhance community and ecosystem resilience in the South Carolina Lowcountry. South Carolina’s Lowcountry is experiencing rapid environmental and social transformation because of SLR rates approaching twice the global average, chronic tidal flooding and catastrophic storm surges, erosion and loss of habitats that provide essential services to wildlife and humans, and increasing social polarization fueled by aggressive low-density urban growth and other forms of land conversion. To support characterizations of plausible future scenarios, we used available or, in some cases, developed new models to project future conditions of key environmental and social-economic drivers. Because of the imprecision of mean global SLR projections, the SECASC commissioned a climatological study to account for local conditions and multiple representative concentration pathways to project a tailored distribution of future sea levels. These projections were matched to SLR scenarios provided by existing models to anticipate the range of future coastal habitat changes in the South Carolina Lowcountry. SLR scenarios were also incorporated into existing storm-surge models, which do not account for alternate baseline sea levels, to project the local effects of future hurricanes. To evaluate the extent and effects of population growth and urban expansion, we relied on an existing urban-growth model to map the spatial distribution of land-conversion probabilities, the total area of which is predicted to increase twofold to threefold over the next 60 years. In addition to this simplified model, an econometric model is in development to account for nonlinear feedback dynamics in land value, land use, and ecosystem service production. Although not yet completed, the goals of this model are to produce more-detailed projections of growth dynamics and to allow predictions of development patterns resulting from alternate land-use planning policies and incentives. Collaborative planning for an uncertain future requires more than providing decision makers with information on future physical and ecological conditions; developing effective and consensual strategies must also integrate sociological values, multiple cultural perspectives, and an understanding of human behavior. To support broad stakeholder engagement in integrative approaches to adaptation planning, emphasis was placed on the importance of considering differences in how individuals perceive their environment and create meaning. Because cultural frameworks form the basis for perceptions and, ultimately, the behaviors of individuals and institutions, we describe a model of human behavior and how it can be used to understand the effect of cultural complexity and variation in perception on choices, behavioral change, and long-term maintenance of behaviors. We consider a model commonly used in the field of behavioral health that accommodates variation in human perception when describing stages of behavior and the dynamics of behavioral change. Tailoring communication and engagement activities to targeted stakeholders is likely to benefit from increased understanding of behavioral change processes. The complex nature of this problem limited the usefulness of a traditional decision-analytic approach, we explored alternative methods for engagement, collaborative learning and decision making. Recognizing that project partners and Lowcountry stakeholders may be at different stages of preparedness and interest level for modifying behavior as a function of global change, we facilitated a scenario-planning exercise to familiarize partners with this well-established approach for communicating the opportunities and threats arising under alternative, plausible futures. We developed narratives for four alternative South Carolina Lowcountry scenarios to be used in later strategic planning that focus on quantitative trends for three primary drivers with high impact and high uncertainty: manifestations of climate change, social-political shifts at a global level, and forces of local value and power structures. This scenario-planning exercise underscored the complex relation between the temporospatial scale of the production of ecological goods and services and the institutional scale at which they are managed. We then guided the partners through an assessment of the relevant strengths and weaknesses of the Cape Romain Partnership for Coastal Protection, using the threats and opportunities characterized by each scenario to understand how the partnership might respond when attempting to meet conservation and societal objectives. The partnership identified key strengths including partnership experience, outreach and technical capacities, a substantial conservation land base, and high social cohesion in the South Carolina Lowcountry. Limited communication expertise, institutional inertia, and insufficient staffing and funding were recognized as important weaknesses across the partnership. By examining and scoring combinations of internal strengths and weaknesses and external threats and opportunities, the partnership developed sets of prioritized strategies to consider in the context of a given scenario. Although we had insufficient time to examine all scenarios in detail, the intent was to identify a portfolio of strategic actions to address threats and opportunities represented in multiple plausible futures. Top-ranking strategies encompassed a range of actions that focused on strengthening the conservation community and communicating the benefits of nature (that is, ecosystem services) to leveraging partnerships to expand land protection. This report also details the methods and preliminary results of several models developed or applied in support of this project. Two parcel-selection algorithms were used to evaluate anticipated habitat changes and patterns of urban growth to guide decisions on optimal conservation reserve design to protect habitat communities. One approach used a widely available planning software (MARXAN) to maximize conservation benefits near the Cape Romain NWR, whereas the other approach was a novel application of economic theory to account for uncertainty in future conditions and for the risks of unanticipated habitat loss. This latter model applies modern portfolio theory to estimate the risk of investing in any portfolio of land parcels (that is, candidate “reserves”) under climate-change uncertainty by quantifying the variation and spatial correlation of conservation benefits derived from each portfolio. We expanded the range of actions beyond simply whether or not to invest in a set of land parcels, an approach commonly used in spatial conservation planning, to also include consideration of divestment from currently protected lands. Such refinements allow for better accounting of system dynamics and can evaluate the benefits of flexible conservation tools such as rolling easements. Model results were conditional on a decision maker’s risk tolerance but highlighted general strategies of land conservation to increase future habitat representation beyond what is expected under the current protected land base. We built models that may help inform coastal planning by estimating salinity dynamics and the performance of oyster reef restoration efforts to predict the combined effects of global change and management of freshwater flows on coastal habitats and the processes that contribute to their resilience. These models can support restoration decisions by evaluating the expected benefits of site locations for shoreline protection and fisheries production. Lastly, we developed a spatially explicit economic model that predicts feedback dynamics among land value, land-use change, and effects on ecosystem service provision to explore zoning policies and incentives on urban growth and ecosystem services. We summarize these efforts with insights and considerations for the Cape Romain Partnership for Coastal Protection to continue to engage stakeholders in effective adaptation planning. First, notions of place attachment (referred to as sense of place), and the role of culture in social discourse are increasingly being used to understand the complex interactions between society and the environment and how societies respond and adapt to climate change. Sense of place was a unifying theme whenever the future of the South Carolina Lowcountry was discussed. The contribution of the South Carolina Lowcountry’s environmental wealth, rich cultural heritage, and quality of life to sense of place has important implications for how adaptation planning might best be pursued. More community-based governance of the commons (in other words, natural and cultural resources held in common), in which broad stakeholder participation and power sharing are key elements, is considered important. This devolution of governance is characterized by polycentric institutions and self-organizing social networks that promote a local culture of knowledge sharing, problem solving, and learning. These so-called bridging organizations (or individuals) often provide the leadership necessary to bring together potentially disparate Government agencies and institutions, private organizations, and individuals in a collective process of problem solving. Our observations also suggest that the conservation community in the South Carolina Lowcountry views its activities as integral to the broader governance of social-ecological systems, in which responses to the forces of global change are mediated through culture, economics, and politics. Rather than directly competing with other interests, the South Carolina Lowcountry conservation community seems to embrace an interpretation of conservation in which the fundamental objective is the quality of human life rather than environmental protection. Fundamental to the types of governance reforms described above is the notion of coproduction, in which experts and users collaborate to develop a shared body of knowledge. In this approach, scientists work with stakeholders to help frame questions, design research, and collect and analyze data. Such sustained collaborations are increasingly believed to be an effective way to produce useable (or actionable) science. The emphasis on social learning, leveraging strong social networks, coordinating and deliberating among diverse stakeholders, and applying principles of adaptive management is an essential contribution to adaptive capacity. The diverse and robust set of scientific approaches, methods to help stakeholders collaborate in effective and goal-driven planning processes, and decision tools resulting from this project hopefully will assist Cape Romain NWR and its partners prepare for climatic, ecological, and social changes over the coming decades.

South Carolina↗

Earthquake shaking and damage to buildings

Ground shaking close to the causative fault of an earthquake is more intense than it was previously believed to be. This raises the possibility that large numbers of buildings and other structures are not sufficiently resistant for the intense levels of shaking that can occur close to the fault. Many structures were built before earthquake codes were adopted; others were built according to codes formulated when less was known about the intensity of near-fault shaking. Although many building types are more resistant than conventional design analyses imply, the margin of safety is difficult to quantify. Many modern structures, such as freeways, have not been subjected to and tested by near-fault shaking in major earthquakes (magnitude 7 or greater). Damage patterns in recent moderate-sized earthquakes occurring in or adjacent to urbanized areas, however, indicate that many structures, including some modern ones designed to meet earthquake code requirements, cannot withstand the severe shaking that can occur close to a fault. It is necessary to review the ground motion assumed and the methods utilized in the design of important existing structures and, if necessary, to strengthen or modify the use of structures that are found to be weak. New structures situated close to active faults should be designed on the basis of ground motion estimates greater than those used in the past. The ultimate balance between risk of earthquake losses and cost for both remedial strengthening and improved earthquake-resistant construction must be decided by the public. Scientists and engineers must inform the public about earthquake shaking and its effect on structures. The exposure to damage from seismic shaking is steadily increasing because of continuing urbanization and the increasing complexity of lifeline systems, such as power, water, transportation, and communication systems. In the near future we should expect additional painful examples of the damage potential of moderate-sized earthquakes in urban areas. Over a longer time span, however, we can significantly reduce the risk to life and property from seismic shaking through better land utilization, improved building codes and construction practices, and at least the gradual replacement of poor buildings by more resistant buildings. Progress toward reducing risk from seismic shaking through better building design is slowed by deficiencies in our knowledge about the nature of damaging ground motion and the failure mechanisms in structures. For example, lacking observational data, seismologists must rely on simplified theoretical and numerical models of the earthquake process to estimate near-fault ground motion, especially for earthquakes as large as magnitude 7 and 8. Because such models have not been adequately tested against data, their reliability is unknown. Engineers lack detailed information about failure processes in structures during an earthquake. Although many structures have been instrumented to measure their response to an earthquake, few records have been obtained from buildings that actually sustained significant structural damage and few structures are properly instrumented to measure all the modes of deformation that are likely to contribute to failure. Moreover, the fact that many structures have withstood ground motion more intense than that assumed in their design indicates that conventional methods of design do not take into account important contributions to earthquake resistance by nonstructural elements and by the ability of structural elements to deform inelastically without necessarily causing failure of the structure. It is fortunate when such reserve resistance exists, but better understanding of the sources of reserve strength is needed to determine how large a margin of safety they confer and how they might be affected by changes in construction practices and materials with time. In the next few years we look forward to significant advances in knowledge and to more effective application of what is already known, largely because of substantial funding of research related to seismic engineering by the National Science Foundation . The increasing number of strong-motion seismographs operating in seismically active regions will likely provide for the first time a number of records of damaging levels of ground motion. Significant effort is being directed toward obtaining near-fault records, although many probable sites of future large earthquakes remain inadequately instrumented, especially outside the conterminous United States. New and more complete information on building response and damage mechanisms will be obtained by improved instrumentation of structures and through laboratory investigations of failure in structures and structural elements. Further developments in computer technology and in computer modeling techniques will permit more realistic simulations of the seismic response of soils and structures that take into account their inelastic behavior and their strain-dependent properties. Earthquake design codes will continually be revised to better utilize existing knowledge concerning the nature of strong ground motion and the dynamic behavior of buildings during earthquakes and to incorporate new knowledge and also experiences gained from future earthquakes. We believe that application of new knowledge, improvements in earthquake-resistant design and construction, and remedial strengthening or replacement of weak existing structures can significantly reduce our current level of exposure to earthquake hazards.

Science↗

The Midwest Stream Quality Assessment

In 2013, the U.S. Geological Survey (USGS) National Water-Quality Assessment Program (NAWQA) and USGS Columbia Environmental Research Center (CERC) will be collaborating with the U.S. Environmental Protection Agency (EPA) National Rivers and Streams Assessment (NRSA) to assess stream quality across the Midwestern United States. The sites selected for this study are a subset of the larger NRSA, implemented by the EPA, States and Tribes to sample flowing waters across the United States ( http://water.epa.gov/type/rsl/monitoring/riverssurvey/index.cfm ). The goals are to characterize water-quality stressors—contaminants, nutrients, and sediment—and ecological conditions in streams throughout the Midwest and to determine the relative effects of these stressors on aquatic organisms in the streams. Findings will contribute useful information for communities and policymakers by identifying which human and environmental factors are the most critical in controlling stream quality. This collaborative study enhances information provided to the public and policymakers and minimizes costs by leveraging and sharing data gathered under existing programs. In the spring and early summer, NAWQA will sample streams weekly for contaminants, nutrients, and sediment. During the same time period, CERC will test sediment and water samples for toxicity, deploy time-integrating samplers, and measure reproductive effects and biomarkers of contaminant exposure in fish or amphibians. NRSA will sample sites once during the summer to assess ecological and habitat conditions in the streams by collecting data on algal, macroinvertebrate, and fish communities and collecting detailed physical-habitat measurements. Study-team members from all three programs will work in collaboration with USGS Water Science Centers and State agencies on study design, execution of sampling and analysis, and reporting.

Midwest↗

Use of dynamic occupancy models to assess the response of Darters (Teleostei: Percidae) to varying hydrothermal conditions in a southeastern United States tailwater

During the past 100 years, most large rivers in North America have been altered for flood control, hydropower, navigation or water supply development. Although these activities clearly provide important human services, their associated environmental disturbances can profoundly affect stream-dwelling organisms. We used dynamic multi-species occupancy models combined with a trait-based approach to estimate the influence of site-level and species-level characteristics on patch dynamic rates for 15 darter species native to the Elk River, a large, flow-regulated Tennessee River tributary in Tennessee and Alabama. Dynamic occupancy modelling results indicated that for every 2.5 °C increase in stream temperature, darters were 3.94 times more likely to colonize previously unoccupied stream reaches. Additionally, large-bodied darter species were 3.72 times more likely to colonize stream reaches compared with small-bodied species, but crevice-spawning darter species were 5.24 times less likely to colonize previously unoccupied stream reaches. In contrast, darters were 2.21 times less likely to become locally extinct for every 2.5 °C increase in stream temperature, but high stream discharge conditions elevated the risk of local extinction. Lastly, the presence of populations in neighbouring upstream study reaches contributed to a lower risk of extinction, whereas the presence of populations in neighbouring downstream study reaches contributed to higher rates of colonization. Our study demonstrates the application of a trait-based approach combined with a metapopulation framework to assess the patch dynamics of darters in a regulated river. Results from our study will provide a baseline for evaluating the ecological consequences of alternative dam operations.

River Research and Applications↗

Seawater circulation in sediments driven by interactions between seabed topography and fluid density

Measurements of submarine groundwater discharge (SGD) in coastal areas often show that the saltwater discharge component is substantially greater than the freshwater discharge. Several mechanisms have been proposed to explain these high saltwater discharge values, including saltwater circulation driven by wave and tidal pumping, wave and tidal setup in intertidal areas, currents over bedforms, and density gradients resulting from mixing along the freshwater-saltwater interface. In this study, a new mechanism for saltwater circulation and discharge is proposed and evaluated. The process results from interaction between bedform topography and buoyancy forces, even without flow or current over the bedform. In this mechanism, an inverted salinity (and density) profile in the presence of both a bedform on the seafloor and an upward flow of fresher groundwater from depth induces a downward flow of saline pore water under the troughs and upward flow under the adjacent crest of the bedform. The magnitude and occurrence of the mechanism were tested using numerical methods. The results indicate that this mechanism could drive seawater circulation under a limited range of conditions and contribute 20%–30% of local SGD when and where the process is operative. Bedform shape, hydraulic conductivity, hydraulic head, and salinity at depth in the porous media, aquifer thickness, effective porosity, and hydrodynamic dispersion are among the factors that control the occurrence and magnitude of the circulation of seawater by this mechanism.

Water Resources Research↗

Effect of septic-tank wastes on quality of water, Ipswich and Shawsheen River basins, Massachusetts

Many housing projects in the metropolitan area of Boston are beyond the reach of municipal sewer systems. Waste water disposed of through septic-tank or cesspool systems percolates to ground-water reservoirs and eventually reaches the streams. The dissolved-solids load in the streams receiving septic-tank effluent is increased by an amount that can be predicted from the housing density. In the study area, highway deicing salts are the only materials other than septic-tank discharge that contribute to water-quality degradation. The effect of these salts on the relationship with housing density is eliminated by subtracting the specific conductance due to sodium chloride from the measured specific conductance of a water sample. The difference is called residual conductance and is proportional to the dissolved-solids content minus the concentration of sodium chloride.

Massachusetts↗

Testing ecosystem accounting in the United States: A case study for the Southeast

Ecosystem accounts, as formalized by the System of Environmental-Economic Accounting Experimental Ecosystem Accounts (SEEA EEA), have been compiled in a number of countries, yet there have been few attempts to develop them for the U.S. We explore the potential for U.S. ecosystem accounting by compiling ecosystem extent, condition, and ecosystem services supply and use accounts for a ten-state region in the Southeast. The pilot accounts address air quality, water quality, biodiversity, carbon storage, recreation, and pollination for selected years from 2001 to 2015. Results illustrate how information from ecosystem accounts can contribute to policy and decision-making. Using an example from Atlanta, we also show how ecosystem accounts can be considered alongside other SEEA accounts to give a more complete picture of a local area’s environmental-economic trends. The process by which we determined where to place metrics within the accounting framework, which was strongly informed by the National Ecosystem Services Classification System (NESCS), can provide guidance for future ecosystem accounts in the U.S. and other countries. Finally, we identify knowledge gaps that limit the inclusion of certain ecosystem services in the accounts and suggest future research that can close these gaps and improve future U.S. ecosystem accounts.

Missouri, Arkansas, Louisiana, Tennessee, Mississi↗

Dynamics of streamflow permanence in a headwater network: Insights from catchment-scale model simulations

The hillslope and channel dynamics that govern streamflow permanence in headwater systems have important implications for ecosystem functioning and downstream water quality. Recent advancements in process-based, semi-distributed hydrologic models that build upon empirical studies of streamflow permanence in well-monitored headwater catchments show promise for characterizing the dynamics of streamflow permanence in headwater systems. However, few process-based models consider the continuum of hillslope-stream network connectivity as a control on streamflow permanence in headwater systems. The objective of this study was to expand a process-based, catchment-scale hydrologic model to better understand the spatiotemporal dynamics of headwater streamflow permanence and to identify controls of streamflow expansion and contraction in a headwater network. Further, we aimed to develop an approach that enhanced the fidelity of model simulations, yet required little additional data, with the intent that the model might be later transferred to catchments with limited long-term and spatially explicit measurements. This approach facilitated network-scale estimates of the controls of streamflow expansion and contraction, albeit with higher degrees of uncertainty in individual reaches due to data constraints. Our model simulated that streamflow permanence was highly dynamic in first-order reaches with steep slopes and variable contributing areas. The simulated stream network length ranged from nearly 98±2% of the geomorphic channel extent during wet periods to nearly 50±10% during dry periods. The model identified a discharge threshold of approximately 1 mm d −1 , above which the rate of streamflow expansion decreases by nearly an order of magnitude, indicating a lack of sensitivity of streamflow expansion to hydrologic forcing during high-flow periods. Overall, we demonstrate that process-based, catchment-scale models offer important insights on the controls of streamflow permanence, despite uncertainties and limitations of the model. We encourage researchers to increase data collection efforts and develop benchmarks to better evaluate such models.

Kentucky↗

Seasonal and decadal subsurface thaw dynamics of an Aufeis feature investigated through numerical simulations

Aufeis (also known as icings) are large sheet-like masses of layered ice that form in river channels in arctic environments in the winter as groundwater discharges to the land surface and subsequently freezes. Aufeis are important sources of water for Arctic river ecosystems, bolstering late summer river discharge and providing habitat for caribou escaping insect harassment. The aim of this research is to use numerical simulations to evaluate a conceptual model of subsurface hydrogeothermal conditions that can lead to the formation of aufeis. We used a conceptual model based on geophysical data from the Kuparuk aufeis field on the North Slope of Alaska to develop a two-dimensional heterogeneous vertical profile model of groundwater flow, heat transport, and freeze/thaw dynamics. Modelling results showed that groundwater can flow to the land surface through subvertical high permeability pathways during winter months when the lower permeability soils near the land surface are frozen. The groundwater discharge can freeze on the surface, contributing to aufeis formation throughout the winter. We performed sensitivity analyses on subsurface properties and surface temperature and found that aufeis formation is most sensitive to the volume of unfrozen water available in the subsurface and the rate at which the subsurface water travels to the land surface. Although a trend of warming air temperatures will lead to a greater volume of unfrozen subsurface water, the aufeis volume can be reduced under warming conditions if the period of time for which air temperatures are below freezing is reduced.

Hydrological Processes↗

Evaluating social vulnerability indicators: Criteria and their application to the Social Vulnerability Index

As a concept, social vulnerability describes combinations of social, cultural, economic, political, and institutional processes that shape socioeconomic differentials in the experience of and recovery from hazards. Quantitative measures of social vulnerability are widely used in research and practice. In this paper, we establish criteria for the evaluation of social vulnerability indicators and apply those criteria to the most widely used measure of social vulnerability, the Social Vulnerability Index (SoVI). SoVI is a single quantitative indicator that purports to measure a place’s social vulnerability. We show that SoVI has some critical shortcomings regarding theoretical and internal consistency. Specifically, multiple SoVI-based measurements of the vulnerability of the same place, using the same data, can yield strikingly different results. We also show that the SoVI is often misaligned with theory; increases in variables that contribute to vulnerability, like the unemployment rate, often decrease vulnerability as measured by the SoVI. We caution against the use of the index in policy making or other risk-reduction efforts, and we suggest ways to more reliably assess social vulnerability in practice.

Natural Hazards↗

Hawai‘i forest review: Synthesizing the ecology, evolution, and conservation of a model system

As the most remote archipelago in the world, the Hawaiian Islands are home to a highly endemic and disharmonic biota that has fascinated biologists for centuries. Forests are the dominant terrestrial biome in Hawai‘i, spanning complex, heterogeneous climates across substrates that vary tremendously in age, soil structure, and nutrient availability. Species richness is low in Hawaiian forests compared to other tropical forests, as a consequence of dispersal limitation from continents and adaptive radiations in only some lineages, and forests are dominated by the widespread Metrosideros species complex. Low species richness provides a relatively tractable model system for studies of community assembly, local adaptation, and species interactions. Moreover, Hawaiian forests provide insights into predicted patterns of evolution on islands, revealing that while some evidence supports “island syndromes,” there are exceptions to them all. For example, Hawaiian plants are not as a whole less defended against herbivores, less dispersible, more conservative in resource use, or more slow-growing than their continental relatives. Clearly, more work is needed to understand the drivers, sources, and constraints on phenotypic variation among Hawaiian species, including both widespread and rare species, and to understand the role of this variation for ecological and evolutionary processes, which will further contribute to conservation of this unique biota. Today, Hawaiian forests are among the most threatened globally. Resource management failures – the proliferation of non-native species in particular – have led to devastating declines in native taxa and resulted in dominance by novel species assemblages. Conservation and restoration of Hawaiian forests now rely on managing threats including climate change, ongoing species introductions, novel pathogens, lost mutualists, and altered ecosystem dynamics through the use of diverse tools and strategies grounded in basic ecological, evolutionary, and biocultural principles. The future of Hawaiian forests thus depends on the synthesis of ecological and evolutionary research, which will continue to inform future conservation and restoration practices.

Hawaii↗

Factors affecting disaster preparedness, response, and recovery using the community capitals framework

Disaster research often focuses on how and why communities are affected by a discrete extreme event. We used the community capitals framework to understand how community characteristics influence their preparedness, response to, and recovery from successive or multiple disasters using the 1964 Good Friday Earthquake and the 1989 Exxon Valdez Oil Spill as case studies. This study assesses community response to these disasters by reviewing published literature on impacts to create profiles for six communities and by identifying community capitals before and during these disasters, and throughout the long-term recovery. While the presence of rich natural capitals commonly contributed resources to pre-disaster planning and long-term recovery, restriction of resource access immediately following the disasters was detrimental to many communities. Communities with strong political, social, and financial capitals tended to fare better immediately following disasters, enabling longer-term processes of transformation or recovery. However, in some communities the oil spill undermined these capitals more than the earthquake and resulting tsunami. In understanding how use and reliance on community capitals can lead to varied recovery success from different kinds of disasters, these findings can help coastal managers and planners prepare for future disasters.

Alaska↗

Fish guidance and passage at barriers

Habitat fragmentation resulting from human activities is a major factor contributing to reductions in biodiversity and species abundance worldwide. When movements are restricted, subpopulations become isolated, leading to reduced breeding opportunities, inbreeding depression, and interruption of key life stages. This problem is particularly ubiquitous in riverine ecosystems, where dams, water diversions, culverts, and other structures create barriers to movements of aquatic organisms. Fragmentation and obstacles to movement can be a natural and important part of riverine ecosystems. The challenge of fish passage is to mitigate for the effects of the barriers by providing passage routes that are both safe and effective. Fish passage technology would greatly benefit from more research on the associations between hydraulics and other environmental stimuli and rheotaxis in migratory fish. Migratory delay, poor attraction, fallback and stalling within fishways, and both immediate and delayed passage-induced mortality are common problems identified for a range of fishway types and taxa.

Book chapter↗

Probiotics beyond the farm: Benefits, costs, and considerations of using antibiotic alternatives in livestock

The increasing global expansion of antimicrobial resistant infections warrants the development of effective antibiotic alternative therapies, particularly for use in livestock production, an agricultural sector that is perceived to disproportionately contribute to the antimicrobial resistance (AMR) crisis by consuming nearly two-thirds of the global antibiotic supply. Probiotics and probiotic derived compounds are promising alternative therapies, and their successful use in disease prevention, treatment, and animal performance commands attention. However, insufficient or outdated probiotic screening techniques may unintentionally contribute to this crisis, and few longitudinal studies have been conducted to determine what role probiotics play in AMR dissemination in animal hosts and the surrounding environment. In this review, we briefly summarize the current literature regarding the efficacy, feasibility, and limitations of probiotics, including an evaluation of their impact on the animal microbiome and resistome and their potential to influence AMR in the environment. Probiotic application for livestock is often touted as an ideal alternative therapy that might reduce the need for antibiotic use in agriculture and the negative downstream impacts. However, as detailed in this review, limited research has been conducted linking probiotic usage with reductions in AMR in agricultural or natural environments. Additionally, we discuss the methods, including limitations, of current probiotic screening techniques across the globe, highlighting approaches aimed at reducing antibiotic usage and ensuring safe and effective probiotic mediated health outcomes. Based on this information, we propose economic and logistical considerations for bringing probiotic therapies to market including regulatory roadblocks, future innovations, and the significant gaps in knowledge requiring additional research to ensure probiotics are suitable long-term options for livestock producers as an antibiotic alternative therapy.

Frontiers in Antibiotics↗

Storm impact scale for barrier islands

A new scale is proposed that categorizes impacts to natural barrier islands resulting from tropical and extra-tropical storms. The proposed scale is fundamentally different than existing storm-related scales in that the coupling between forcing processes and the geometry of the coast is explicitly included. Four regimes, representing different levels of impact, are defined. Within each regime, patterns and relative magnitudes of net erosion and accretion are argued to be unique. The borders between regimes represent thresholds defining where processes and magnitudes of impacts change dramatically. Impact level 1 is the 'swash' regime describing a storm where runup is confined to the foreshore. The foreshore typically erodes during the storm and recovers following the storm; hence, there is no net change. Impact level 2 is the 'collision' regime describing a storm where the wave runup exceeds the threshold of the base of the foredune ridge. Swash impacts the dune forcing net erosion. Impact level 3 is the 'overwash' regime describing a storm where wave runup overtops the berm or, if present, the foredune ridge. The associated net landward sand transport contributes to net migration of the barrier landward. Impact level 4 is the 'inundation' regime describing a storm where the storm surge is sufficient to completely and continuously submerge the barrier island. Sand undergoes net landward transport over the barrier island; limited evidence suggests the quantities and distance of transport are much greater than what occurs during the 'overwash' regime.

Journal of Coastal Research↗

Techniques for restoring damaged Mojave and western Sonoran ecosystems, including those for threatened desert tortoises and Joshua trees

Ecological restoration has potential for contributing to conservation activities for threatened Mojave desert tortoises ( Gopherus agassizii ) and Joshua trees ( Yucca brevifolia , Y. jaegeriana ) and their broader ecosystems in the Mojave and western Sonoran deserts. To be effective, restoration actions deployed strategically need to halt and reverse habitat degradation, replenish or enhance resources used by both species (e.g., large shrubs for protection of tortoises and nurse plants facilitating recruitment of Joshua tree seedlings), and ideally foster resilience during likely future environmental changes. We synthesized restoration techniques and their effectiveness in the Mojave and western Sonoran deserts, provide estimated costs of candidate techniques, and anticipate future research needs for effective restoration in changing climates and environments. Over 50 published studies in the Mojave and western Sonoran deserts demonstrate that restoration can improve soil features (e.g., biocrusts), increase cover of native perennial and annual plants, enhance native seed retention and seed banks, and reduce risk of fires to conserve mature shrubland habitat. We placed restoration techniques into three categories: restoration of site environments, revegetation, and management actions to limit further disturbance and encourage recovery. Within these categories, 11 major restoration techniques (and their variations) were evaluated by at least one published study and range from geomorphic (e.g., reestablishing natural topographic patterns) and abiotic structural treatments (e.g., vertical mulching) to active revegetation (e.g., outplanting, seeding). For example, 16 outplanting studies assessed performance of 46 species to begin identifying top-performing species, associated treatments (e.g., protection from herbivory) required to aid outplant survival, and potential for outplants to trigger formation of self-sustaining populations. Creosote bush (Larrea tridentata), a shrub that tortoises use for cover and that serves as a nurse plant for Joshua tree recruitment, achieved at least 50% survival in five of eight studies. Estimated costs for restoring desert habitats varied primarily with the severity of the disturbance, site factors including the diversity of vegetation that was lost, logistical factors such as accessibility of sites (influencing transportation costs), and the cost-effectiveness of the restoration techniques chosen. The review highlights six major research and adaptive management needs for advancing desert habitat restoration. These needs include: 1) continued development of innovative techniques and bet-hedging approaches to provide managers with “tool boxes” of candidate treatments to deploy in dynamic environmental and management conditions, 2) identifying how to optimize spatial deployment of limited restoration resources, 3) developing practical techniques for reducing non-native annual grasses across spatial scales, 4) improving linkages between habitat enhancements and short- and long-term indicators of tortoise usage and responses and Joshua tree population sustainability, 5) mitigating multiple, interacting stressors with cumulative impacts, and 6) integrating biotic (e.g., seeding) and abiotic (e.g., fencing, shade structures) treatments to complement each other at site and landscape scales in dynamic climates and environments. It is possible that bet-hedging approaches employing multiple treatment types (or phased treatments across years) and greater incorporation of abiotic treatments, which are less sensitive to timing of precipitation compared with biotic treatments, will become increasingly important under future climates projected to be drier and more variable. Existing research suggests that restoration can be deployed effectively even under adverse climatic conditions, but success requires identifying suitable techniques tailored to dynamic environments.

Arizona, California, Nevada, Sonora↗

Rehabilitation of gypsum-mined lands in the Indian desert

The economic importance of mining in the Indian Desert is second only to agriculture. Land disturbed by mining, however, has only recently been the focus of rehabilitation efforts. This research assesses the success of rehabilitation plans used to revegetate gypsum mine spoils within the environmental constraints of the north-west Indian hot-desert ecosystem. The rehabilitation plan first examined both mined and unmined areas and established assessments of existing vegetative cover and the quality of native soils and mine spoils. Tests were made on the effect of the use, and conservation, of available water through rainwater harvesting, amendment application (for physical and chemical spoil modification), plant establishment protocols, and the selection of appropriate germ plasm. Our results show that the resulting vegetative cover is capable of perpetuating itself under natural conditions while concurrently meeting the needs of farmers. Although the mine spoils are deficient in organic matter and phosphorus, they possess adequate amounts of all other nutrients. Total boron concentrations (>5.0 mg kg-1) in both the topsail and mine spoil indicate potentially phytotoxic conditions. Electrical conductance of mine spoil is 6-10 times higher than for topsail with a near-neutral pH. Populations of spoil fungi, Azotobactor, and nitrifying bacteria are low. The soil moisture storage in rainwater harvesting plots increased by 8% over the control and 48% over the unmined area. As a result of rehabilitation efforts, mine spoils show a steady buildup in organic carbon, and P and K due to the decomposition of farmyard manure and the contribution of nitrogen fixation by the established leguminous plant species. The rehabilitation protocol used at the site appears to have been successful. Following revegetation of the area with a mixture of trees, shrubs, and grasses, native implanted species have become established. Species diversity, measured in terms of species richness, increased after one year and then gradually declined over time; the decline was the result of the loss of annual species. The study not only develops methods of gypsum mine land rehabilitation but also helps in understanding processes of rehabilitation success in arid regions and emphasizes the importance of long-term monitoring of rehabilitation success. Copyright ?? 2001 Taylor & Francis.

Arid Soil Research and Rehabilitation↗