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Cadmium toxicity among wildlife in the Colorado Rocky Mountains

Cadmium is known to be both extremely toxic and ubiquitous in natural environments. It occurs in almost all soils, surface waters and plants, and it is readily mobilized by human activities such as mining. As a result, cadmium has been named as a potential health threat to wildlife species; however, because it exists most commonly in the environment as a trace constituent, reported incidences of cadmium toxicity are rare. Here we have measured trace metals in the food web and tissues of white-tailed ptarmigan (Lagopus leucurus) in Colorado. Our results suggest that cadmium toxicity may be more common among natural populations of vertebrates than has been appreciated to date and that cadmium toxicity may often go undetected or unrecognized. In addition, our research shows that ingestion of even trace quantities of cadmium can influence not only the physiology and health of individual organisms, but also the demographics and the distribution of species.

Nature↗

A spatial individual-based model predicting a great impact of copious sugar sources and resting sites on survival of Anopheles gambiae and malaria parasite transmission

Background Agent-based modelling (ABM) has been used to simulate mosquito life cycles and to evaluate vector control applications. However, most models lack sugar-feeding and resting behaviours or are based on mathematical equations lacking individual level randomness and spatial components of mosquito life. Here, a spatial individual-based model (IBM) incorporating sugar-feeding and resting behaviours of the malaria vector Anopheles gambiae was developed to estimate the impact of environmental sugar sources and resting sites on survival and biting behaviour. Methods A spatial IBM containing An. gambiae mosquitoes and humans, as well as the village environment of houses, sugar sources, resting sites and larval habitat sites was developed. Anopheles gambiae behaviour rules were attributed at each step of the IBM: resting, host seeking, sugar feeding and breeding. Each step represented one second of time, and each simulation was set to run for 60 days and repeated 50 times. Scenarios of different densities and spatial distributions of sugar sources and outdoor resting sites were simulated and compared. Results When the number of natural sugar sources was increased from 0 to 100 while the number of resting sites was held constant, mean daily survival rate increased from 2.5% to 85.1% for males and from 2.5% to 94.5% for females, mean human biting rate increased from 0 to 0.94 bites per human per day, and mean daily abundance increased from 1 to 477 for males and from 1 to 1,428 for females. When the number of outdoor resting sites was increased from 0 to 50 while the number of sugar sources was held constant, mean daily survival rate increased from 77.3% to 84.3% for males and from 86.7% to 93.9% for females, mean human biting rate increased from 0 to 0.52 bites per human per day, and mean daily abundance increased from 62 to 349 for males and from 257 to 1120 for females. All increases were significant (P < 0.01). Survival was greater when sugar sources were randomly distributed in the whole village compared to clustering around outdoor resting sites or houses. Conclusions Increases in densities of sugar sources or outdoor resting sites significantly increase the survival and human biting rates of An. gambiae mosquitoes. Survival of An. gambiae is more supported by random distribution of sugar sources than clustering of sugar sources around resting sites or houses. Density and spatial distribution of natural sugar sources and outdoor resting sites modulate vector populations and human biting rates, and thus malaria parasite transmission.

Malaria Journal↗

Human activities and weather drive contact rates of wintering elk

Wildlife aggregation patterns can influence disease transmission. However, limited research evaluates the influence of anthropogenic and natural factors on aggregation. Many managers would like to reduce wildlife contact rates, driven by aggregation, to limit disease transmission. We develop a novel analytical framework to quantify how management activities such as supplemental feeding and hunting versus weather drive contact rates while accounting for correlated contacts. We apply the framework to the National Elk Refuge (NER), Wyoming, USA, where the probable arrival of chronic wasting disease (CWD) has magnified concerns. We used a daily proximity index to measure contact rates among 68 global positioning system collared elk from 2016 to 2019. We modelled contact rates as a function of abiotic weather‐related effects, anthropogenic effects and aggregation from the prior day. The winter of 2017–2018 had greater natural forage availability and little snow, which led to a rare non‐feeding year on the NER and provided a unique opportunity to evaluate the effect of feeding on contact rates relative to other conditions. Supplemental feeding was the strongest predictor of aggregation, and contact rates were 2.6 times larger while feeding occurred compared to the baseline rate (0.34 and 0.13, respectively). Snow‐covered area was the second strongest predictor of contact rates highlighting the importance of abiotic factors to elk aggregation, but this effect had half the strength of feeding. These results are the first to show, even in animals that congregate naturally, how greatly supplemental feeding amplifies aggregation. Contact rates were also 23% lower during times when elk hunting was active (0.10) compared to the baseline. Synthesis and applications . Supplemental feeding increased contacts between elk well above the natural effects of weather, even after accounting for correlated movement expected in wintering ungulates. Similarly, differences in hunting season timing with adjacent areas led to an increase in contacts, suggesting an additional management option for reducing aggregation. The analytical framework presented supports the evaluation of temporally varying management actions that influence aggregation broadly and can be easily implemented whether the interest in changing aggregation is related to reduction of disease transmission, human–wildlife conflict or inter‐species competition.

Wyoming↗

The US federal framework for research on endocrine disrupters and an analysis of research programs supported during fiscal year 1996

The potential health and ecological effects of endocrine disrupting chemicals has become a high visibility environmental issue. The 1990s have witnessed a growing concern, both on the part of the scientific community and the public, that environmental chemicals may be causing widespread effects in humans and in a variety of fish and wildlife species. This growing concern led the Committee on the Environment and Natural Resources (CENR) of the National Science and Technology Council to identify the endocrine disruptor issue as a major research initiative in early 1995 and subsequently establish an ad hoc Working Group on Endocrine Disruptors. The objectives of the working group are to 1) develop a planning framework for federal research related to human and ecological health effects of endocrine disrupting chemicals; 2) conduct an inventory of ongoing federal research programs; and 3) identify research gaps and develop a coordinated interagency plan to address priority research needs. This communication summarizes the activities of the federal government in defining a common framework for planning an endocrine disruptor research program and in assessing the status of the current effort. After developing the research framework and compiling an inventory of active research projects supported by the federal government in fiscal year 1996, the CENR working group evaluated the current federal effort by comparing the ongoing activities with the research needs identified in the framework. The analysis showed that the federal government supports considerable research on human health effects, ecological effects, and exposure assessment, with a predominance of activity occurring under human health effects. The analysis also indicates that studies on reproductive development and carcinogenesis are more prevalent than studies on neurotoxicity and immunotoxicity, that mammals (mostly laboratory animals) are the main species under study, and that chlorinated dibenzodioxins and polychlorinated biphenyls are the most commonly studied chemical classes. Comparison of the inventory with the research needs should allow identification of underrepresented research areas in need of attention.

Environmental Health Perspectives↗

Human-in-the-Loop segmentation of earth surface imagery

Segmentation, or the classification of pixels (grid cells) in imagery, is ubiquitously applied in the natural sciences. Manual methods are often prohibitively time-consuming, especially those images consisting of small objects and/or significant spatial heterogeneity of colors or textures. Labeling complicated regions of transition that in Earth surface imagery are represented by collections of mixed-pixels, -textures, and -spectral signatures, can be especially error-prone because it is difficult to reliably unmix, identify and delineate consistently. However, the success of supervised machine learning (ML) approaches is entirely dependent on good label data. We describe a fast, semi-automated, method for interactive segmentation of N-dimensional (x, y, N) images into two-dimensional (x, y) label images. It uses human-in-the-loop ML to achieve consensus between the labeler and a model in an iterative workflow. The technique is reproducible; the sequence of decisions made by human labeler and ML algorithms can be encoded to file, so the entire process can be played back and new outputs generated with alternative decisions and/or algorithms. We illustrate the scientific potential of segmentation of imagery of diverse settings and image types using six case studies from river, estuarine, and open coast environments. These photographic and non-photographic imagery consist of 1- and 3-bands on regular and irregular grids ranging from centimeters to tens of meters. We demonstrate high levels of agreement in label images generated by several labelers on the same imagery, and make suggestions to achieve consensus and measure uncertainty, ideal for widespread application in training supervised ML for image segmentation.

Earth and Space Science↗

Land cover and land use change

Climate can affect and be affected by changes in land cover (the physical features that cover the land such as trees or pavement) and land use (human management and activities on land, such as mining or recreation). A forest, for instance, would likely include tree cover but could also include areas of recent tree removals currently covered by open grass areas. Land cover and use are inherently coupled: changes in land-use practices can change land cover, and land cover enables specific land uses. Understanding how land cover, use, condition, and management vary in space and time is challenging. Changes in land cover can occur in response to both human and climate drivers. For example, demand for new settlements often results in the permanent loss of natural and working lands, which can result in localized changes in weather patterns, temperature, and precipitation. Aggregated over large areas, these changes have the potential to influence Earth’s climate by altering regional and global circulation patterns, changing the albedo (reflectivity) of Earth’s surface, and changing the amount of carbon dioxide (CO 2 ) in the atmosphere. Conversely, climate change can also influence land cover, resulting in a loss of forest cover from climate-related increases in disturbances, the expansion of woody vegetation into grasslands, and the loss of beaches due to coastal erosion amplified by rises in sea level. Land use is also changed by both human and climate drivers. Land-use decisions are traditionally based on short-term economic factors. Land-use changes are increasingly being influenced by distant forces due to the globalization of many markets. Land use can also change due to local, state, and national policies, such as programs designed to remove cultivation from highly erodible land to mitigate degradation, legislation to address sea level rise in local comprehensive plans, or policies that reduce the rate of timber harvest on federal lands. Technological innovation has also influenced land-use change, with the expansion of cultivated lands from the development of irrigation technologies and, more recently, decreases in demand for agricultural land due to increases in crop productivity. The recent expansion of oil and gas extraction activities throughout large areas of the United States demonstrates how policy, economics, and technology can collectively influence and change land use and land cover. Decisions about land use, cover, and management can help determine society’s ability to mitigate and adapt to climate change.

Report↗

Nutrient pollution of coastal rivers, bays, and seas

Over the past 40 years, antipollution laws have greatly reduced discharges of toxic substances into our coastal waters. This effort, however, has focused largely on point-source pollution of industrial and municipal effluent. No comparable effort has been made to restrict the input of nitrogen (N) from municipal effluent, nor to control the flows of N and phosphorus (P) that enter waterways from dispersed or nonpoint sources such as agricultural and urban runoff or as airborne pollutants. As a result, inputs of nonpoint pollutants, particularly N, have increased dramatically. Nonpoint pollution from N and P now represents the largest pollution problem facing the vital coastal waters of the United States. Nutrient pollution is the common thread that links an array of problems along the nation’s coastline, including eutrophication, harmful algal blooms, ”dead zones,” fish kills, some shellfish poisonings, loss of seagrass and kelp beds, some coral reef destruction, and even some marine mammal and seabird deaths. More than 60 percent of our coastal rivers and bays in every coastal state of the continental United States are moderately to severely degraded by nutrient pollution. This degradation is particularly severe in the mid Atlantic states, in the southeast, and in the Gulf of Mexico. A recent report from the National Research Council entitled “Clean Coastal Waters: Understanding and Reduc- ing the Effects of Nutrient Pollution” concludes that: Nutrient over-enrichment of coastal ecosystems generally triggers ecological changes that decrease the biologi- cal diversity of bays and estuaries. While moderate N enrichment of some coastal waters may increase fish production, over-enrichment generally degrades the marine food web that supports commercially valuable fish. The marked increase in nutrient pollution of coastal waters has been accompanied by an increase in harmful algal blooms, and in at least some cases, pollution has triggered these blooms. High nutrient levels and the changes they cause in water quality and the makeup of the algal community are detrimental to the health of coral reefs and the diversity of animal life supported by seagrass and kelp communi- ties. Research during the past decade confirms that N is the chief culprit in eutrophication and other impacts of nutrient over-enrichment in temperate coastal waters, while P is most problematic in eutrophication of freshwa- ter lakes. Human conversion of atmospheric N into biologically useable forms, principally synthetic inorganic fertilizers, now matches the natural rate of biological N fixation from all the land surfaces of the earth. Both agriculture and the burning of fossil fuels contribute significantly to nonpoint flows of N to coastal waters, either as direct runoff or airborne pollutants. N from animal wastes that leaks directly to surface waters or is volatilized to the atmosphere as ammonia may be the largest single source of N that moves from agricultural operations into coastal waters. The National Research Council report recommended that, as a minimum goal, the nation should work to reverse nutrient should be taken to assure that the 40 percent of coastal areas now ranked as healthy do not develop symptoms of nutrient pollution in 10 percent of its degraded coastal systems by 2010 and 25 percent of them by 2020. Also, action should be taken to assure that the 40 percent of coastal areas now ranked as healthy do not develop symptoms of nutrient pollution. Meeting these goals will require an array of strategies and approaches tailored to specific regions and coastal ecosystems. There is an urgent need for development and testing of techniques that can reliably pinpoint the sources of N pollutants to an estuary. For some coastal systems, N removal during treatment of human sewage may be sufficient to reverse nutrient pollution. For most coastal systems, however, the solutions will be more complex and may involve controls on N compounds emitted during fossil fuel combustion as well as incentives to reduce over-fertilization of agricul- tural fields and nutrient pollution from animal wastes in livestock feedlot operations.

Alabama, California, Connecticut, Delaware, Florid↗

Tambora and the mackerel year: Phenology and fisheries during an extreme climate event

Global warming has increased the frequency of extreme climate events, yet responses of biological and human communities are poorly understood, particularly for aquatic ecosystems and fisheries. Retrospective analysis of known outcomes may provide insights into the nature of adaptations and trajectory of subsequent conditions. We consider the 1815 eruption of the Indonesian volcano Tambora and its impact on Gulf of Maine (GoM) coastal and riparian fisheries in 1816. Applying complex adaptive systems theory with historical methods, we analyzed fish export data and contemporary climate records to disclose human and piscine responses to Tambora’s extreme weather at different spatial and temporal scales while also considering sociopolitical influences. Results identified a tipping point in GoM fisheries induced by concatenating social and biological responses to extreme weather. Abnormal daily temperatures selectively affected targeted fish species—alewives, shad, herring, and mackerel—according to their migration and spawning phenologies and temperature tolerances. First to arrive, alewives suffered the worst. Crop failure and incipient famine intensified fishing pressure, especially in heavily settled regions where dams already compromised watersheds. Insufficient alewife runs led fishers to target mackerel, the next species appearing in abundance along the coast; thus, 1816 became the “mackerel year.” Critically, the shift from riparian to marine fisheries persisted and expanded after temperatures moderated and alewives recovered. We conclude that contingent human adaptations to extraordinary weather permanently altered this complex system. Understanding how adaptive responses to extreme events can trigger unintended consequences may advance long-term planning for resilience in an uncertain future.

Maine, Massachusetts↗

The boundary model: A geographical analysis of design and conservation of nature reserves

It is widely recognised that nearly all parks and reserves are too small to protect their biological diversity. In response to this problem, we have been developing a multidisciplinary ‘boundary model’ that focuses upon the processes of exchange across the administrative edges of nature reserves. The model incorporates known dynamics from various disciplines and describes the interactions of these forces across the boundary. These disciplines include biogeography, ecology, and human effects, influences and attitudes in an understanding of reserve boundary vulnerability and effectiveness. The boundary model recognises the development of edges in association with the establishment of the administrative boundary. However, it discerns between ‘natural’ and ‘generated’ edges that are based upon the differing stimuli for their development and change. Segmentation of the boundary is recognised as a manifestation of environmental heterogeneity. The boundary model suggests that exposure of the reserve is a major determinate of potential vulnerability. Effectiveness of reserve protection is hypothesised to be more dependent upon what crosses the boundary than upon any internal processes alone.

Biological Conservation↗

Caddisflies (Insecta: Trichoptera) of fringing wetlands of the Laurentian Great Lakes

Fringing wetlands of the Laurentian Great Lakes are subject to natural processes, such as water-level fluctuation and wave-induced erosion, and to human alterations. In order to evaluate the quality of these wetlands over space and time, biological communities are often examined. This paper reports on the use of adult caddisflies to evaluate fringing wetlands of Lake Huron, Lake Michigan, and Lake Superior.

Illinois, Indiana, Michigan, Minnesota, Ontario, W↗

Using remote sensing and imagery exploitation to monitor the dynamics of East Timbalier Island, LA: 2000-2010

In 1999, the National Oceanic and Atmospheric Administration-National Marine Fisheries Service and the State of Louisiana jointly undertook the restoration of East Timbalier, a barrier island along a sediment-starved portion of the Gulf of Mexico coast of Louisiana. High-resolution overhead imagery was used to monitor the course of this restoration effort. This article describes the changes in area and movement of East Timbalier Island and compares these changes with the previous measurements. Between 2000 and 2010, East Timbalier Island lost 52&ndash;66% of its area and moved northwards 12&ndash;105 m/year. The area of East Timbalier Island is less today than at any time since 1887. Understanding of the physical processes in nature that control the size, shape and movement of the island, as well as the human impacts that have hastened its degradation, is critical for accomplishing any future restoration.

Louisiana↗

The future of imaging spectroscopy - Prospective technologies and applications

Spectroscopy has existed for more than three centuries now. Nonetheless, significant scientific advances have been achieved. We discuss the history of spectroscopy in relation to emerging technologies and applications. Advanced focal plane arrays, optical design, and intelligent on-board logic are prime prospective technologies. Scalable approaches in pre-processing of imaging spectrometer data will receive additional focus. Finally, we focus on new applications monitoring transitional ecological zones, where human impact and disturbance have highest impact as well as in monitoring changes in our natural resources and environment We conclude that imaging spectroscopy enables mapping of biophysical and biochemical variables of the Earth's surface and atmospheric composition with unprecedented accuracy.

Conference Paper↗

Quantifying urban intensity in drainage basins for assessing stream ecological conditions

Three investigations are underway, as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program, to study the relation between varying levels of urban intensity in drainage basins and in-stream water quality, measured by physical, chemical, and biological factors. These studies are being conducted in the vicinities of Boston (Massachusetts), Salt Lake City (Utah), and Birmingham (Alabama), areas where rapid urbanization is occurring. For each study, water quality will be sampled in approximately 30 drainage basins that represent a gradient of urban intensity. This paper focuses on the methods used to characterize and select the basins used in the studies. It presents a methodology for limiting the variability of natural landscape characteristics in the potential study drainage basins and for ranking the magnitude of human influence, or urbanization, based on land cover, infrastructure, and socioeconomic data in potential study basins. Basin characterization efforts associated with the Boston study are described for illustrative purposes.

Alabama, Massachusetts, Utah↗

Effects of land use on summer thermal regimes in critical salmonid habitats of the Pacific Northwest

The effect of climate change on stream temperature regimes is of significant concern to natural resource managers focused on protecting cold-water-dependent species. Nevertheless, understanding of how human land-use activities may act to exacerbate the effects of climate change on stream temperature regimes is limited. Using extensive stream temperature data with high-resolution climate and habitat data, we quantified how land management activities are related to summer stream temperatures across the Pacific Northwest, USA. We then described the distribution of land management practices influencing summer thermal regimes relative to the distribution of salmonid fish species of conservation concern. After accounting for climatic and geophysical variation, we detected a strong relationship between livestock grazing and summer thermal regimes. Maximum, average, and diel variation in water temperature was greater where livestock grazing was present. Livestock grazing was widespread, occurring in 43%–100% of sites supporting salmonid species of conservation concern. Thus, current land management practices may be intensifying the effects of ongoing climate change in freshwater habitats, acting to further threaten cold-water fishes of conservation concern.

Washington, Oregon, Idaho, Montana↗

The southern megalopolis: using the past to predict the future of urban sprawl in the Southeast U.S.

The future health of ecosystems is arguably as dependent on urban sprawl as it is on human-caused climatic warming. Urban sprawl strongly impacts the urban ecosystems it creates and the natural and agro-ecosystems that it displaces and fragments. Here, we project urban sprawl changes for the next 50 years for the fast-growing Southeast U.S. Previous studies have focused on modeling population density, but the urban extent is arguably as important as population density per se in terms of its ecological and conservation impacts. We develop simulations using the SLEUTH urban growth model that complement population-driven models but focus on spatial pattern and extent. To better capture the reach of low-density suburban development, we extend the capabilities of SLEUTH by incorporating street-network information. Our simulations point to a future in which the extent of urbanization in the Southeast is projected to increase by 101% to 192%. Our results highlight areas where ecosystem fragmentation is likely, and serve as a benchmark to explore the challenging tradeoffs between ecosystem health, economic growth and cultural desires.

PLoS ONE↗

Population size, trends, and conservation problems of the Double-Crested Cormorant on the Pacific Coast of North America

Population size, trends and conservation problems of the Double-crested Cormorant ( Phalacrocorax auritus ) were collated for the Pacific coast of North America using available data up to 1992. About 54,942 birds currently breed there, including roughly 5,848 (5,622 at 90 coastal colonies and at least 226 at 5 interior colonies) and 49,094 (43,358 at 126 coastal colonies and at least 5,736 at 22 interior colonies) for subspecies P. a. cincinatus in Alaska and P. a. albociliatus , from British Columbia to Sinaloa (Mexico), respectively. In addition, 51 and 22 inactive colonies have been documented in coastal and interior regions, respectively. Major historical declines (in the 1800s and early 1900s) occurred in much of Alaska, California, and Mexico, followed by increases in British Columbia, Washington, Oregon and California from the 1920s to 1980s. Recent declines are occurring in British Columbia, Washington, and Baja California. Trends are affected by apparent movements of nesting birds during El Niño oceanographic conditions and due to habitat loss at interior colonies, as well as recent use of artificial nesting habitats in some areas. Conservation problems have included various forms of human disturbance and persecution, marine pollutants, and high levels of predation owing to introduced and natural predators.

Alaska, California, Oregon, Washington↗

Sea-ice conditions predict polar bear land use around military installations in Alaska

Polar bears ( Ursus maritimus ) are threatened by sea-ice loss due to climate change, which is concurrently opening the Arctic to natural resource extraction and a broader scope of national security responsibilities. Mitigating the risk of human–bear conflicts is an emerging challenge as many polar bears spend longer ice-free summers on land where they have limited access to food and come into more frequent contact with people. We investigated a suite of physical and ecological variables that influence the timing of polar bear arrival on, and departure from, land using remote-sensing data on sea-ice extent and satellite telemetry data from 72 radio-collared adult female polar bears from 1986 to 2015. Analyses encompassed the coastline of the Southern Beaufort Sea north of Alaska, USA, and focused on zones within a 35-km radius (mean daily travel distance of a polar bear) of 5 military installations. Sea ice in the Southern Beaufort Sea retreated approximately 1 month earlier in spring, and reformed 1 month later in fall, in 2015 compared to 1979. In generalized linear mixed models, the most important predictors of polar bear arrival and departure were the dates of sea-ice breakup and formation, respectively, in localized marine areas surrounding each military zone. Region-wide sea-ice conditions also influenced land use, although to a lesser extent. We found that polar bears spent longer periods on land in the military zones compared to outside the zones, which may reflect increased land use in areas with human activity and potential attractants (noting that some military installations were in proximity to other human settlements). Our results demonstrate that the timing of polar bear land use in northern Alaska is influenced by sea-ice conditions on multiple spatial scales. This information can be used to predict and manage the presence of polar bears around military installations and other places of interest.

Alaska↗

Evaluating the variability of sediment and nutrient loading from riverine systems into Texas estuaries and bays

The water quality in estuaries and bays and the health of these coastal ecosystems are affected by sediment and nutrient loads transported by streams. Large sediment loads delivered to an estuary or bay can degrade water quality. Concentrations of suspended sediment are affected by natural conditions (such as soil erosion and streambed resuspension) and can also be affected by human activities (such as development, timber harvesting, certain agricultural practices, and hydraulic alteration). An increased sediment load delivered to an estuary or bay can reduce water clarity and light penetration (Senus and others, 2005) in the water column. Senus and others (2005, p. 1) also note that nutrients are needed to sustain life, but excess nutrient loads from human activities may cause unbalanced and unhealthy changes in water quality that are harmful to aquatic organisms. Nitrogen and phosphorus are two known nutrients of concern. Poor water quality caused by an abundance of these nutrients can stimulate the excessive growth of phytoplankton, promote algal blooms, reduce dissolved oxygen levels, and cause fish kills.

Texas↗