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USGS2022

The ~400 yr B.P. eruption of Half Cone, a post-caldera composite cone within Aniakchak caldera, Alaska Peninsula

Aniakchak volcano is a historically active caldera located on the central Alaska Peninsula. The largest eruption from Aniakchak since the ~3,400 yr B.P. caldera-forming eruption occurred ~400 yr B.P. from Half Cone volcano, an intracaldera composite cone on the northwest floor of the Aniakchak caldera that was largely destroyed by the eruption. The ~400 yr B.P. eruption produced a widely dispersed pumice fall deposit known as the Pink and Brown Pumice. Following small phreatomagmatic explosions, a buoyant Plinian eruption column combined with southwesterly winds dispersed ~1.3 km3 of crystal-poor dacite (66.1–67.1% SiO2) Pink Pumice at least 70 km to the northeast from Half Cone (~0.05 km3 dense rock equivalent; DRE). Fluctuations in the diameters of pyroclasts and accidental lithics in the Pink Pumice indicate at least two cycles of waxing and waning mass flux at the Half Cone vent. This vent produced an eruption column that twice expanded and gained altitudes of ~15–20 km before weakening to lower altitudes. Brown Pumice scoria (58.2– 66.9% SiO2) as well as compositionally banded pyroclasts at the top of the Pink Pumice indicate that both dacite magma and an increasing amount of low-SiO2 (58.2–60.5% SiO2) andesite magma were erupted simultaneously during the transition to the Brown Pumice phase of the eruption. The reversely graded Brown Pumice fall deposit records an escalating Plinian column dominated by low-SiO2 Brown Pumice scoria that reached altitudes of ~20–24 km and led to the emplacement of least ~3.5 km3 of fall deposits up to at least 230 km to the northeast (~1 km3 DRE). Over time, the Brown Pumice eruption column repeatedly experienced partial collapse that ultimately produced thick pyroclastic density current deposits, most of which were confined to within the caldera. Lithic-rich agglutinate and spatter exposed in 60-m-thick deposits atop the severed flanks of Half Cone and within ~2 km of Half Cone were emplaced at the end of the Brown Pumice phase. Agglutinate deposits range from 58.6 to.64.8% SiO2, which generally falls in the compositional range between Brown and Pink Pumice compositional endmembers. Most of the Half Cone edifice was destroyed by the end of the Brown Pumice phase. The ~0.1 km3 crystal-rich dacitic Cobweb lava flow (64.8–65.8% SiO2) filled a basin left behind by the destruction of Half Cone as a series of radiating lobes. Subsequently, a small andesitic tuff cone (62.2–62.8% SiO2) formed over the Cobweb lava flow vent. In all, we estimate that at least ~5.4 km3 of tephra and ~0.1 km3 of lava erupted during the ~400 yr B.P. eruption, yielding a total magmatic volume (DRE) of ~1.3 km3. Titanomagnetite-ilmenite pairs in Pink and Brown Pumice samples record similar equilibrium temperature ranges (944–997 °C and 959–985 °C, respectively) but different fO2 conditions—Pink Pumice pairs plot between NNO and NNO +0.5, Brown Pumice pairs plot below the NNO buffer. Titanomagnetite-ilmenite pairs in Brown Pumice agglutinate record a wider range of temperatures than either Pink or Brown Pumice samples (899–1018 °C) but also show two populations of fO2—one that overlaps the Pink Pumice array at higher fO2 and one that overlaps the Brown Pumice array at lower fO2. Titanomagnetite-ilmenite pairs from the Cobweb lava flow have the largest fO2 range (NNO -0.5 to NNO +0.5), although most pairs overlap Brown Pumice samples at lower fO2 conditions near NNO -0.5. Pairs in Cobweb lava samples record temperatures from 837 to 1054 °C, which is the largest temperature range recorded in deposits emplaced during any phase of the ~400 yr B.P. eruption. Geothermometry results of titanomagnetite-ilmenite pairs in ≤3,400 yr B.P. samples erupted from Aniakchak volcano record a similar temperature range and the presence of two fO2 arrays as the ~400 yr B.P. samples, which implies the existence of two magma regions of the mush column; each the product of slightly different evolution. In addition, results from in situ compositional analyses of plagioclase suggest that the ~400 yr B.P. eruption may have been initiated, at least in part, by intrusion of basaltic magma, which ascended from the lower crust into the shallow subvolcanic magma mush column prior to and during eruption. The bimodal distribution of whole-rock compositions and the two plagioclase populations in the low-SiO2 Brown Pumice—one defined by An40–An60 cores and one defined by An79–An95 cores—is consistent with an abbreviated period of mixing between intruding basalt and resident dacite mush prior to eruption. Progressive mixing between mafic and felsic magmas during and after the eruption likely produced the subsequently erupted Cobweb lava flow, which has an intermediate composition with abundant mineral disequilibria. Aniakchak volcano continues to show episodic signs of unrest, suggesting that eruptions will occur in the future.

Alaska↗

USGS2015

Preliminary interpretation of industry two-dimensional seismic data from Susitna Basin, south-central Alaska

Located approximately 80 kilometers northwest of Anchorage, Alaska, the Susitna Basin is a complex sedimentary basin whose tectonic history has been poorly understood. Recent interpretation of two-dimensional seismic reflection data integrated with well, aeromagnetic, and gravity data provides new insights into the structural and stratigraphic nature of the basin. This report presents an interpretation of 41 two-dimensional seismic reflection lines, acquired by industry from the 1960s to the 1980s. Our interpretation of the seismic data focused mainly on picking two Eocene stratigraphic units and a presumed base of Tertiary horizon. Based on our interpretation of the seismic data, the structural features in the basin appear to be generally contractional, as evidenced by the presence of many reverse faults, thrust faults, and folds, with the contraction mainly oriented east-west. This result is contrary to prior inferences of most previous geologic studies that showed normal faults. Several regional reverse faults have been identified in the seismic data and appear to divide the basin into three regions or “sides”: east, west, and south. The eastern seismic lines show evidence of numerous short-wavelength antiforms that appear to correspond to a series of northeast-trending lineations observed in aeromagnetic data, which have been interpreted as being due to folding of Paleogene volcanic strata. The eastern side of the basin is also cut by a number of reverse faults and thrust faults, the majority of which strike north-south. The western side of the Susitna Basin is cut by a series of regional reverse faults and is characterized by synformal structures in two fault blocks between the Kahiltna River and Skwentna faults. These synforms are progressively deeper to the west in the footwalls of the east-vergent Skwentna and northeast-vergent Beluga Mountain reverse faults. Although the seismic data are limited to the south, we interpret a potential regional south-southeast-directed reverse fault striking east-northeast on the east side of the basin that may cross the entire southern portion of the basin.

Alaska↗

USGS2022

Biology: Integrating core to essential variables (Bio-ICE) task team report for hard corals

The Interagency Ocean Observation Committee (IOOC) is chartered by the White House Office of Science and Technology Policy (OSTP) Subcommittee on Ocean Science and Technology (SOST). The purpose of the IOOC is to advise, assist, and make recommendations to the SOST on matters related to ocean observations via task teams such as the Biology - Integrating Core to Essential Variables (Bio-ICE) task team. The goal of the Bio-ICE task team is to advance the integration of biological observations from local, regional, and federal sources using best practices to inform national needs and ultimately feed seamlessly into the Global Ocean Observing System (GOOS), as appropriate. To accomplish this goal, and for the first time at the U.S. federal government level, a subgroup of the Bio-ICE task team focused on tropical, shallow-water (0-30 m) hard corals to identify commonalities between the U.S. Integrated Ocean Observing System (IOOS) core biological variable1 of “coral species and abundance,” the GOOS Essential Ocean Variable2 (EOV) “hard coral cover and composition,” the Group on Earth Observations Biological Observation Network (GEO BON) Essential Biodiversity Variables3 (EBVs), and the Global Climate Observing System (GCOS) Essential Climate Variables4 (ECVs) (Figure 1). The EOV data allows production of EBVs such as time series of maps of genetic composition, species populations, etc. Recognizing the complementarity of the different essential variable frameworks helps to promote best practices in observing and information management to facilitate data interoperability (Figure 1). The task team was charged with identifying where there are synergies in terms of spatial and temporal observing requirements and existing observation infrastructure and data delivery, including best practices and standard operating procedures. The task team also made suggestions to improve pathways for data flow for observations of these variables from Regional Associations of the U.S. IOOS, other nonfederal partners, and federal sources. The focus of the task team was on identifying and implementing best practices surrounding standardized data collection and data delivery to make continued progress toward adhering to the Findability, Accessibility, Interoperability, and Reuse (FAIR) and Collective benefit, Authority to control, Responsibility, and Ethics (CARE) data principles.

Task Team Report↗

USGS2007

New vitrinite reflectance data for the Bighorn Basin, north-central Wyoming and south-central Montana

The Bighorn Basin is a large Laramide (Late Cretaceous through Eocene) structural and sedimentary basin that encompasses about 10,400 mi2 in north-central Wyoming and south-central Montana (fig. 1). Important conventional oil and gas resources have been discovered and produced from reservoirs ranging in age from Cambrian through Tertiary (Fox and Dolton, 1989, 1996a, b; De Bruin, 1993). In addition, a potential unconventional basin-centered gas accumulation may be present in Cretaceous reservoirs (Johnson and Finn, 1998; Johnson and others, 1999). The purpose of this report is to present new vitrinite reflectance data to be used in support of the U.S Geological Survey’s assessment of undiscovered oil and gas resources of the Bighorn Basin. These new data supplement previously published data by Nuccio and Finn (1998), and Yin (1997), and lead to a better understanding and characterization of the thermal maturation and burial history of potential source rocks. Eighty-nine samples of Cretaceous and Tertiary strata (fig. 2) were collected and analyzed—15 samples were from outcrops around the margins of the basin and 74 samples were well cuttings (fig. 1). Forty-one of the samples were shale, two were carbonaceous shale, and the remainder from coal. All samples were analyzed by vitrinite reflectance to determine levels of thermal maturation. Preparation of samples for reflectance analysis required (1) crushing the larger pieces into 0.25-to 1-mm pieces, (2) casting the pieces with epoxy in pre-cut and drilled plugs, and (3) curing the samples overnight. Subsequently, a four-step grinding and polishing process was implemented that included sanding with progressively finer sandpaper (60 and 600 grit) followed with a two-step polishing process (0.3 and 0.05 micron). Vitrinite reflectance measurements were determined at 500 X magnification using plane-polarized incident white light and a 546-nm monochromatic filter in immersion oil. For samples containing sufficiently high quality vitrinite, at least 25 measurements were recorded. For samples of poorer quality, either due to a poor polish or to the presence of mineral or other inorganic material, fewer measurements were recorded. Analytical results are given in tables 1 and 2.

Open-File Report↗

USGS2019

Spatial integration of biological and social objectives to identify priority landscapes for waterfowl habitat conservation

Waterfowl population management and habitat conservation compose one of the oldest and most successful adaptive management frameworks in the world. Since its inception, the North American Waterfowl Management Plan (NAWMP) has emphasized strategically targeted conservation investments in regions that most affect waterfowl population dynamics. By 2012, regional conservation had progressively become more science-based and strategic: many migratory bird partnerships had initiated or completed projects on mapping and modeling waterfowl distribution and abundances using geospatial techniques. However, when developing a map depicting and titled “Areas of Greatest Continental Significance to North American Ducks, Geese, and Swans” for the 2012 NAWMP Revision, waterfowl professionals articulated the need for improved decision frameworks and use of consistent datasets for refining large-scale spatial products depicting priority areas for waterfowl and people. This report describes a framework for developing a spatial value model to support the identification of North American geographies of importance to waterfowl during the breeding and non-breeding periods and to resource users who could potentially support (financially and (or) politically) waterfowl habitat conservation. Objectives used to identify priority geographies were determined through a collaborative process of the NAWMP Science Support Team, Priority Landscapes Committee (PLC), and other experts in the fields of waterfowl biology and ecology, environmental science, and human dimensions. ArcGIS Desktop was used as the platform for managing, analyzing, combining and displaying the spatial data as well as producing new data through spatial analysis functions. Thirty-eight spatial layers were developed, and several composite spatially explicit products (maps of North America) were produced based on PLC recommendations. The composite products have extensive similarities to the 2012 NAWMP map depicting areas of greatest continental significance to North American waterfowl. There are also some differences, especially in regions of the high Arctic and in Mexico. These differences between spatial value model maps and the 2012 NAWMP output likely arose from inclusion of social objectives, reduced dependence on expert opinion to generate abundance estimates, lack of population surveys in some regions and availability of expanded survey data in other regions, and use of model-based waterfowl population estimates for some unsurveyed areas. The structured decision-making framework application in this study is discussed, and the appropriate use of the products and their limitations are outlined. Additionally, options for future improvements are presented by identifying gaps in data collection, waterfowl-habitat association assumptions, and uncertainties related to social objectives. These spatial products are intended for use by national, regional, and province/state level wildlife professionals to aid their decisions in targeting waterfowl habitat conservation.

Open-File Report↗

USGS1996

Effects of coal-mine discharges on the quality of the Stonycreek River and its tributaries, Somerset and Cambria counties, Pennsylvania

This report describes the results of a study by the U.S. Geological Survey, done in cooperation with the Somerset Conservation District, to locate and sample abandoned coal-mine discharges in the Stonycreek River Basin, to prioritize the mine discharges for remediation, and to determine the effects of the mine discharges on water quality of the Stonycreek River and its major tributaries. From October 1991 through November 1994, 270 abandoned coal-mine discharges were located and sampled. Discharges from 193 mines exceeded U.S. Environmental Protection Agency effluent standards for pH, discharges from 122 mines exceeded effluent standards for total-iron concentration, and discharges from 141 mines exceeded effluent standards for total-manganese concentration. Discharges from 94 mines exceeded effluent standards for all three constituents. Only 40 mine discharges met effluent standards for pH and concentrations of total iron and total manganese. A prioritization index (PI) was developed to rank the mine discharges with respect to their loading capacity on the receiving stream. The PI lists the most severe mine discharges in a descending order for the Stonycreek River Basin and for subbasins that include the Shade Creek, Paint Creek, Wells Creek, Quemahoning Creek, Oven Run, and Pokeytown Run Basins. Passive-treatment systems that include aerobic wetlands, compost wetlands, and anoxic limestone drains (ALD's) are planned to remediate the abandoned mine discharges. The successive alkalinity-producing-system treatment combines ALD technology with the sulfate reduction mechanism of the compost wetland to effectively remediate mine discharge. The water quality and flow of each mine discharge will determine which treatment system or combination of treatment systems would be necessary for remediation. A network of 37 surface-water sampling sites was established to determine stream-water quality during base flow. A series of illustrations show how water quality in the mainstem deteriorates downstream because of inflows from tributaries affected by acidic mine discharges. From the upstream mainstem site (site 801) to the outflow mainstem site (site 805), pH decreased from 6.8 to 4.2, alkalinity was completely depleted by inflow acidities, and total-iron discharges increased from 30 to 684 pounds per day. Total-manganese and total-sulfate discharges increased because neither constituent precipitates readily. Also, discharges of manganese and sulfate entering the mainstem from tributary streams have a cumulative effect. Oven Run and Pokeytown Run are two small tributary streams significantly affected by acidic mine drainage (AMD) that flow into the Stonycreek River near the town of Hooversville. The Pokeytown Run inflow is about 0.5 mile downstream from the Oven Run inflow. These two streams are the first major source of AMD flowing into the Stonycreek River. Data collected on the Stonycreek River above the Oven Run inflow and below the Pokeytown Run inflow show a decrease in pH from 7.6 to 5.1, a decrease in alkalinity concentration from 42 to 2 milligrams per liter, an increase in total sulfate discharge from 18 to 41 tons per day, and an increase in total iron discharge from 29 to 1,770 pounds per day. Data collected at three mainstem sites on the Stonycreek River below Oven Run and Pokeytown Run show a progressive deterioration in river water quality from AMD. Shade Creek and Paint Creek are other tributary streams to the Stonycreek River that have a significant negative effect on water quality of the Stonycreek River. One third of the abandoned-mine discharges sampled were in the Shade Creek and Paint Creek Basins.

Pennsylvania↗

USGS2019

Geochronologic, isotopic, and geochemical data from igneous rocks in the Lane Mountain area, San Bernardino County, California

We present new geochronologic, isotopic, and geochemical data for selected igneous rocks in the Lane Mountain area, California. We determined SHRIMP-RG U-Pb zircon ages for the following units: (1) Larrea complex (~253 Ma and ~149–146 Ma); (2) Daisy granodiorite (~151 Ma); (3) Jack Spring quartz monzonite (~85–82 Ma); (4) unnamed porphyritic dikes and stocks (~80–73 Ma); and (5) Lane Mountain volcanics (~22 Ma). These results confirm and refine previous age determinations for the Larrea complex, Jack Spring quartz monzonite, and Lane Mountain volcanics, and provide the first reliable ages for the Daisy granodiorite and the unnamed porphyritic rocks. Sri of the plutonic rocks increases from ~0.704 to ~0.705–0.706 to ~0.708–0.709 for samples dated as ~250, ~150, and ~85–70 Ma, respectively, which indicates progressively greater involvement of Precambrian continental lithosphere in magma generation through time. The Sri and geochemical data suggest that the most significant change in magmatic source occurred between ~150 and 85 Ma.

California↗

USGS1977

Limnological studies of the major streams in Chester County, Pennsylvania

The major streams in Chester County, Pennsylvania were studied to determine their environmental state, and to relate this condition to land- use patterns. A biological numerical rating system on a scale of 1 to 10 was developed to classify stream conditions. One indicates extremely toxic conditions and 10 balanced biological conditions. The majority of the streams studied had ratings between 4 and 8, indicating they were experiencing varying degrees of enrichment and/or sediment deposition. The streams with high numerical ratings were generally found in rural and agricultural areas. Streams with low numerical rating were found mostly in areas near waste treatment facilities or industry. Large changes in the numerical rating of a stream were related to changes in land-use patterns. Relationships were developed between dissolved solids concentrations and the biological numerical ratings of the streams. Streams with ratings from 6 to 10 had dissolved solids concentrations of approximately 100 mg/L. At ratings of 5 to 1, the dissolved solids concentrations increased progressively from 122 to 310 mg/L. Chemical data for the streams were related to the dominant orders of benthic invertebrates. The stoneflies were found to be the most sensitive to high levels of chemical constituents. The trueflies, mayflies, and caddis flies showed a wide tolerance to various chemical constituents.

Pennsylvania↗

USGS2009

Multiscale sagebrush rangeland habitat modeling in southwest Wyoming

Sagebrush-steppe ecosystems in North America have experienced dramatic elimination and degradation since European settlement. As a result, sagebrush-steppe dependent species have experienced drastic range contractions and population declines. Coordinated ecosystem-wide research, integrated with monitoring and management activities, would improve the ability to maintain existing sagebrush habitats. However, current data only identify resource availability locally, with rigorous spatial tools and models that accurately model and map sagebrush habitats over large areas still unavailable. Here we report on an effort to produce a rigorous large-area sagebrush-habitat classification and inventory with statistically validated products and estimates of precision in the State of Wyoming. This research employs a combination of significant new tools, including (1) modeling sagebrush rangeland as a series of independent continuous field components that can be combined and customized by any user at multiple spatial scales; (2) collecting ground-measured plot data on 2.4-meter imagery in the same season the satellite imagery is acquired; (3) effective modeling of ground-measured data on 2.4-meter imagery to maximize subsequent extrapolation; (4) acquiring multiple seasons (spring, summer, and fall) of an additional two spatial scales of imagery (30 meter and 56 meter) for optimal large-area modeling; (5) using regression tree classification technology that optimizes data mining of multiple image dates, ratios, and bands with ancillary data to extrapolate ground training data to coarser resolution sensors; and (6) employing rigorous accuracy assessment of model predictions to enable users to understand the inherent uncertainties. First-phase results modeled eight rangeland components (four primary targets and four secondary targets) as continuous field predictions. The primary targets included percent bare ground, percent herbaceousness, percent shrub, and percent litter. The four secondary targets included percent sagebrush (Artemisia spp.), percent big sagebrush (Artemisia tridentata), percent Wyoming sagebrush (Artemisia tridentata wyomingensis), and sagebrush height (centimeters). Results were validated by an independent accuracy assessment with root mean square error (RMSE) values ranging from 6.38 percent for bare ground to 2.99 percent for sagebrush at the QuickBird scale and RMSE values ranging from 12.07 percent for bare ground to 6.34 percent for sagebrush at the full Landsat scale. Subsequent project phases are now in progress, with plans to deliver products that improve accuracies of existing components, model new components, complete models over larger areas, track changes over time (from 1988 to 2007), and ultimately model wildlife population trends against these changes. We believe these results offer significant improvement in sagebrush rangeland quantification at multiple scales and offer users products that have been rigorously validated.

Wyoming↗

USGS1969

Environmental impact of oil development in northern Alaska

It is reported that in the spring of 1969 a high official of one of the oil companies was flying over the area of oil development in the vicinity of Prudhoe Bay. He is quoted as saying "If the American people could see what we are doing to their land here, they would want to abolish the use of the reciprocating engine." The last really large area of wilderness in the United States is the' Brooks Range and the Arctic Coastal Plain which stretches from that range to the Arctic Ocean. The proving of the exploratory oil wells which have been drilled on the coastal plain in the vicinity of Prudhoe Bay makes it virtually certain that this heretofore mostly unknown country will rapidly and vigorously be exposed to a variety of changes caused by the influx of men and their equipment. Even within the first four months of 1969 the whole aspect of the central part of the region has been importantly changed by the drilling programs of several large oil companies. So suddenly was this change brought about that no long-range plans have been developed either to soften the effect of such development on the natural environment or even to record the progress of these effects. Yet the absence of a plan provides an inadvertent potential advantage in that there has' been no history of increasingly firm Federal policy which, in other places, has often made it difficult to take newly conceived action in line with the increasing societal interest in environmental preservation. The lack of firm Federal policy provides here a unique opportunity for the application of new rules and investigative techniques aimed at minimizing the adverse effects on the environment while5.at the same time, not unduly hindering the development of the natural resources. But the speed with which the changes are being wrought makes it imperative that the principles applicable here to environmental protection or preservation, be enunciated immediately and that from these principles flow farsighted regulations which reflect the new interest in combining resource development with environmental protection. The present report constitutes a brief summary of the conditions existing in northern Alaska in the spring of 1969, presenting some inferences on the environmental changes which can be expected in the future and offering some specific steps which, if taken immediately and positively, could greatly ameliorate the adverse effects of rapid development in the absence of positive steps for environmental protection. In that regard, then, this report is ephemeral in character because the conditions in northern Alaska will surely change with great rapidity. Considering the"fragility and sensitivity of the ecosystems existing there, the changes can be both harsh and permanent. Therefore, whatever value lies in the recommendations made here., the results of their application will depend on the promptness of their consideration, amendment, and application. Whatever form the actions might take for minimizing the harm to the environment, the urgency of the matter can hardly be overestimated.

Alaska↗

USGS1986

Review of the intensive culture of walleye fry

Efficient intensive culture of larval walleyes (Stizostedion vitreum) may soon be realized due to results of research on larval development, culture environment, preferred food organisms, and feeding techniques. Larval behavior and morphology (developmental state) can be used as indicators for appropriate handling and feeding techniques. Certain environmental conditions such as a rearing unit color that contrasts with food organisms, water temperatures of 18‐22°C, uniform lighting, and a stocking density of no more than 35,000 fish/m 3 reportedly contribute to increased growth and survival. Successful culture requires that suitable food such as cladocerans, copepods, and brine shrimp be continuously available at a high density (0.1 organism/mL). Cannibalism among walleye larvae has not been prevented but has been reduced through the use of suitable fish and food densities.

Progressive Fish-Culturist↗

USGS1987

Feed conversion indices: Controversy or convention?

Various methods of calculating and reporting the efficiency of food use in fish husbandry are examined. The effects of moisture content of feed and fish flesh, supplemental feeds augmented with natural feed items, differences in energy content due to feed formulations, and the usefulness of the various feed efficiency indices to aquaculturists and fish husbandry researchers are discussed.

Progressive Fish-Culturist↗

USGS1985

Abundance fluctuations among benthic invertebrates in two pacific estuaries

Long-term studies were used to examine (1) contrasting time scales and mechanisms of structural variations within two benthic communities and (2) the usefulness of long data sets for evaluating human impact. A 10-year study of a San Francisco Bay mudflat, the details of which are reported elsewhere, has revealed large short-term (on the order of months) variations in species abundances within a community composed predominantly of opportunistic species. The study site, located in a highly urbanized estuary, is subject to the influence of a nearby sewage-treatment facility. However, rapid changes in population size of the common species, in part due to periodic natural habitat disturbance, impedes the detection of anthropogenic influences on community composition. Only a very long-term data set may provide evidence of progressive change. Data collected for a 20-year period on the benthic community at 200 m depth in the main basin of Puget Sound, an environment subject to little apparent habitat disturbance show that numerical abundance of the common species can also change markedly. Here, however, numerical dominance shifts from one species to another at irregular, multiyear intervals. Recent increases in two heretofore rare species, and a significant increase in total numbers of individuals suggest that long-term changes may be occurring in this community. These two long-term data sets demonstrate the importance of measuring both the amplitude and the periodicity of fluctuations in population size of aquatic species as well as long-term fluctuations and patterns in environmental factors before attempting to demonstrate the effect of anthropogenic influences on aquatic communities. The results of these studies also demonstrate the usefulness of long-term data sets for revealing the potential importance of interactions among species in determining abundance patterns in the soft-bottom benthos.

Estuaries↗

USGS1896

Hydrographic surveys

This circular is intended to answer questions asked by correspondents regarding the progress and character of the work of the "Irrigation Survey" and of related investigations being carried on by the Division of Hydrography of the United States Geological Survey. It also gives a review of the legislation authorizing this work, together with a list of publications of the Geological Survey showing the results accomplished.

Division of Hydrography Circular↗

USGS2021

Supporting the development and use of native plant materials for restoration on the Colorado Plateau (Fiscal Year 2020 Report)

A primary focus of the Colorado Plateau Native Plant Program (CPNPP) is to identify and develop appropriate native plant materials (NPMs) for current and future restoration projects. Multiple efforts have characterized the myriad challenges inherent in providing appropriate seed resources to enable effective, widespread restoration and have identified a broad suite of research activities to provide the information necessary to overcome those challenges (e.g., Plant Conservation Alliance 2015; Breed et al. 2018; Winkler et al. 2018). Many of the most complex information needs relate to identifying the appropriate sources of plant species that can successfully establish in dryland environments, like the Colorado Plateau, where precipitation is generally low and highly variable. Providing this information requires synergistic research efforts that build upon insight gained from earlier investigations. The U.S. Geological Survey (USGS) Southwest Biological Science Center’s (SBSC’s) research activities that supported CPNPP in FY20 followed the FY20 Statement of Work to support a research framework that is continually adapting based on the needs of the restoration community and results from previous investigations; the long-term research framework is outlined in the 2019-2023 5-Year Research Strategy (hereafter referred to as the 5-year plan). This research framework provides support for the National Seed Strategy for Rehabilitation and Restoration (Plant Conservation Alliance, 2015), Department of Interior Secretarial Order #3347 ( Conservation Stewardship and Outdoor Recreation ), and Bureau of Land Management Leadership Priority #1 ( Create a conservation stewardship legacy second only to Teddy Roosevelt ). Research activities in FY20 centered on landscape genomics, implementing a common garden experiment near Vernal, UT, conducting experimental treatments using the GRID (Germination for Restoration Information and Decision-making) framework, and collecting seeds and leaf tissues in the field in preparation for future experiments. These activities were supported by five biological science technicians. The SARS-CoV-2 pandemic delayed some aspects of the FY20 workplan, especially for contract laboratory services and the construction of the GRID garden in Flagstaff, AZ. However, goals were largely met, and the overall progress of research remains on track with respect to the 5-year plan. While Dr. Rob Massatti was the only scientist supported by the SBSC-CPNPP agreement in FY20, other scientists, including Drs. John Bradford, Seth Munson, Mike Duniway, Sasha Reed, Matt Jones, and Daniel Winkler, spent a considerable amount of time providing expertise and support for individual projects. Work activities performed in support of each goal are discussed in turn.

Arizona, Colorado, New Mexico, Utah↗

USGS2019

Regional protocol framework for the inventory and monitoring of breeding Atlantic Coast Piping Plovers

This regional protocol provides a framework for quantifying the number of breeding pairs and productivity of Atlantic Coast piping plover (Charadrius melodus) populations during the breeding season. A primary purpose of this protocol is to standardize piping plover monitoring during the breeding season. The survey techniques described herein involve repeated visual counts of adults, nests, eggs, and chicks within a defined survey site (i.e., beach) as well as visual identification of potential threats to survival and productivity. Resulting data can be compiled and analyzed across multiple geographic units (i.e., sites, states, and recovery units) to assess progress toward recovery goals, inform local management decisions, assess management effectiveness, and improve monitoring efforts. This protocol framework was developed as part of the United States Fish and Wildlife Service (USFWS) National Wildlife Refuge System (NWRS) Inventory and Monitoring (I&M) Initiative in coordination with Ecological Services (ES) and state coordinators within the Southeast and Northeast Regions (4 and 5, respectively). Although this protocol framework is to be used primarily by NWRS to inform recovery goals, assist with local management decision-making, and meet State reporting requirements, the approach strives to assist monitoring efforts of nonNWRS partners, such as other federal agencies (e.g. National Park Service), State wildlife agencies, non-governmental organizations, and private landowners. This protocol framework and associated data management system (PIPLweb) aims to interface with existing data management and analysis tools (i.e., PIPLODES, NestStory, and PiperEx) to ensure that data collection is efficient and comparable across scales, and supports management decisions across partners. The content and structure of the protocol framework follows standards set forth in the USFWS’s How to Develop Survey Protocols: A Handbook (Version 1.0; 2013). The eight elements addressed include: introduction, sampling design, field methods, data management and analysis, reporting, personnel requirements and training, operational requirements, and references. A series of standard operating procedures (SOPs) provides greater detail on recommended methods and technical aspects of this protocol. Data entry, archival, and multi-scale analysis are handled through a secure web application (Plover Inventory and Productivity Library; PIPLweb) developed by the United States Geological Survey (USGS). When management activities and survey objectives are similar across management units, partners (Refuges, other federal agencies, State, NGOs, private) are encouraged to use this protocol framework to develop stepped-down site-specific survey protocols that include guidance for conducting on-the-ground monitoring and management plans.

Regional Protocol Framework↗

USGS1999

Influence of bacterial kidney disease on smoltification in salmonids: Is it a case of double jeopardy?

We investigated the effects of a chronic, progressive infection with Renibacterium salmoninarum (Rs), the causative agent of bacterial kidney disease (BKD), on selected aspects of smoltification in yearling juvenile spring chinook salmon (Oncorhynchus tshawytscha). After experimentally infecting fish with Rs using an immersion challenge, we sampled them every two weeks to monitor changes in gill Na+, K+-ATPase (ATPase), cortisol, infection level, mortality, growth, and other stress-related physiological factors during the normal time of parr-smolt transformation in fresh water (i.e., from winter to spring). A progressively worsening infection with Rs did not alter the normal changes in gill ATPase and condition factor associated with smoltification in juvenile chinook salmon. The infection did, however, lead to elevated levels of plasma cortisol and lactate and depressed levels of plasma glucose, indicating that the disease is stressful during the later stages. A dramatic proliferation of BKD was associated with maximal responses of indicators of smoltification, suggesting that the process of smoltification itself can trigger outbreaks of disease. Our results suggest mechanisms that probably influence the reported inability of Rs-infected fish to successfully adapt to sea water.

Aquaculture↗

USGS1991

Towable cage for studies of smoltification in Atlantic salmon

The floating towable cage described in this report was used successfully to hold and transport Atlantic salmon ( Salmo salar ) in estuarine waters. These rugged and versatile cages, constructed from readily available, inexpensive materials, were tied singly and in clusters to floating docks in fresh and brackish water, where they withstood strong currents, winds, floods, and tides for 2.5 months without visible damage.

Progressive Fish-Culturist↗