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Passage and behavior of adult American shad in an experimental louver bypass system

We tested 436 adult American shad Alosa sapidissima in an experimental louver bypass system, which was similar to a system operating at Holyoke Dam, Massachusetts, to determine guidance and passage efficiency and to study fish response to stimuli from physical structures, light intensity, and water velocity. Groups of 5–29 fish were exposed to combinations of two bypass exits (wide-shallow and vertical-slot sharp-crested weirs) and two louver arrays (7.6- and 15.2-cm slat spacing) oriented 20° to water flow direction. Underwater video observations showed fish responded to louvers as a physical barrier during the day, when they stayed 30–55 cm (1.3 cm/5 klx) away from and oriented parallel to louvers, and as a behavioral barrier at night, when they moved closer to louvers and oriented into the current. Both louver arrays guided fish effectively, (i.e., prevented fish from passing through the slats) 100% for narrow spacing and 97% for wide spacing. Adults avoided moving closer than 0.5 m to either exit type; instead, fish remained 0.8–1.4 bodylengths upstream, depending on light intensity (farther upstream during daytime, similar to behavior at louvers). At exits, water velocity increased from 0.4 m/s to 0.8 m/s or more in a distance of 0.9 m (rate of velocity increase, 0.44 m/s per meter). This rapid velocity increase elicited an avoidance response by fish that resulted in few fish (5%) passing. Our results provide behavioral explanations for the efficient guidance of adult American shad by louvers and for the fishes' avoidance of the exit at the Holyoke Dam. From this, we provide suggestions on how to prevent fish avoidance of exits.

Massachusetts↗

Habitat associations of small fishes around islands in the upper Mississippi River

In large rivers, islands provide a variety of habitat types and increase habitat heterogeneity. Creating or modifying islands with dredged sediments from channel maintenance operations provides an opportunity to enhance habitat features that might promote certain fish communities or general fish abundance. To determine associations between fish species and habitat features of islands, we sampled fish by seining at 62 sites around 20 islands in the upper Mississippi River from Winona, Minnesota, to Prairie du Chien, Wisconsin (180 km). Habitat characteristics were divided into macrohabitat features associated with islands, such as island shape, location, or maximum depth around the island, and mesohabitat features of sites, such as depth, sediment type, and vegetation abundance. Cluster analysis of islands based on macrohabitat features identified four clusters distinguished primarily by water depth and distance from the main channel. Mean fish density did not differ among island clusters. Cluster analysis of sites based on mesohabitat features produced four clusters distinguished primarily by vegetation abundance. Mean densities of most fish taxa were highest in clusters with moderate or dense vegetation and lowest in the cluster with no vegetation. For the eight most abundant fish species, multiple-regression analysis of density on mesohabitat features across all sites indicated that all species were positively correlated with vegetation abundance, which explained 7-49% of variation in density. Our results suggest that mesohabitat features of sites were more important than macrohabitat features of islands in determining density of small fishes and that modifications that increase the abundance of vegetation around islands are most likely to increase fish density.

Minnesota, Wisconsin↗

Radio tag retention and tag-related mortality among adult sockeye salmon

Tag retention and tag-related mortality are concerns for any tagging study but are rarely estimated. We assessed retention and mortality rates for esophageal radio tag implants in adult sockeye salmon Oncorhynchus nerka . Migrating sockeye salmon captured at the outlet of Lake Clark, Alaska, were implanted with one of four different radio tags (14.5 × 43 mm (diameter × length), 14.5 × 49 mm, 16 × 46 mm, and 19 × 51 mm). Fish were observed for 15 to 35 d after tagging to determine retention and mortality rates. The overall tag retention rate was high (0.98; 95% confidence interval (CI), 0.92-1.00; minimum, 33 d), with one loss of a 19-mm × 51- mm tag. Mortality of tagged sockeye salmon (0.02; 95% CI, 0-0.08) was similar to that of untagged controls (0.03 (0-0.15)). Sockeye salmon with body lengths (mid-eye to tail fork) of 585-649 mm retained tags as large as 19 × 51 mm and those with body lengths of 499-628 mm retained tags as small as 14.5 × 43 mm for a minimum of 33 d with no increase in mortality. The tags used in this study represent a suite of radio tags that vary in size, operational life, and cost but that are effective in tracking adult anadromous salmon with little tag loss or increase in fish mortality.

Alaska↗

Precision and accuracy of age estimates obtained from anal fin spines, dorsal fin spines, and sagittal otoliths for known-age largemouth bass

Sagittal otoliths are the preferred aging structure for Micropterus spp. (black basses) in North America because of the accurate and precise results produced. Typically, fisheries managers are hesitant to use lethal aging techniques (e.g., otoliths) to age rare species, trophy-size fish, or when sampling in small impoundments where populations are small. Therefore, we sought to evaluate the precision and accuracy of 2 non-lethal aging structures (i.e., anal fin spines, dorsal fin spines) in comparison to that of sagittal otoliths from known-age Micropterus salmoides (Largemouth Bass; n = 87) collected from the Ocmulgee Public Fishing Area, GA. Sagittal otoliths exhibited the highest concordance with true ages of all structures evaluated (coefficient of variation = 1.2; percent agreement = 91.9). Similarly, the low coefficient of variation (0.0) and high between-reader agreement (100%) indicate that age estimates obtained from sagittal otoliths were the most precise. Relatively high agreement between readers for anal fin spines (84%) and dorsal fin spines (81%) suggested the structures were relatively precise. However, age estimates from anal fin spines and dorsal fin spines exhibited low concordance with true ages. Although use of sagittal otoliths is a lethal technique, this method will likely remain the standard for aging Largemouth Bass and other similar black bass species.

Southeastern Naturalist↗

Real-time piscicide tracking using Rhodamine WT dye for support of application, transport, and deactivation strategies in riverine environments

Piscicide applications in riverine environments are complicated by the advection and dispersion of the piscicide by the flowing water. Proper deactivation of the fish toxin is required outside of the treatment reach to ensure that there is minimal collateral damage to fisheries downstream or in connecting and adjacent water bodies. In urban settings and highly managed waterways, further complications arise from the influence of industrial intakes and outfalls, stormwater outfalls, lock and dam operations, and general unsteady flow conditions. These complications affect the local hydrodynamics and ultimately the transport and fate of the piscicide. This report presents two techniques using Rhodamine WT dye for real-time tracking of a piscicide plume—or any passive contaminant—in rivers and waterways in natural and urban settings. Passive contaminants are those that are present in such low concentration that there is no effect (such as buoyancy) on the fluid dynamics of the receiving water body. These methods, when combined with data logging and archiving, allow for visualization and documentation of the application and deactivation process. Real-time tracking and documentation of rotenone applications in rivers and urban waterways was accomplished by encasing the rotenone plume in a plume of Rhodamine WT dye and using vessel-mounted submersible fluorometers together with acoustic Doppler current profilers (ADCP) and global positioning system (GPS) receivers to track the dye and map the water currents responsible for advection and dispersion. In this study, two methods were used to track rotenone plumes: (1) simultaneous injection of dye with rotenone and (2) delineation of the upstream and downstream boundaries of the treatment zone with dye. All data were logged and displayed on a shipboard laptop computer, so that survey personnel provided real-time feedback about the extent of the rotenone plume to rotenone application and deactivation personnel. Further, these strategies facilitate adjustment of rotenone application and deactivation strategies in real time if necessary based on the observed advection and dispersion of the rotenone plume. Two large-scale and complex applications of rotenone in the Chicago Area Waterway System (CAWS) in 2009 and 2010 to combat invasive Asian carp are documented in this report. The application in Chicago Sanitary and Ship Canal (CSSC) in December 2009 involved more than 1,800 gallons of rotenone injected at multiple stations through a 6.2-mile reach of the canal near Lockport, Illinois. The rotenone plume was encased in Rhodamine WT dye so that two survey boats provided real-time feedback to shore personnel regarding the plume extent as it advected downstream. Real-time tracking of the rotenone was essential in this large-scale application because of the multistage injection strategy and the numerous deactivation points required to minimize collateral damage to fisheries in surrounding and receiving water bodies. All timing of application and deactivation operations relied on dye tracking. A second application of rotenone in May 2010 to the Little Calumet River near O’Brien Lock and Dam (Illinois) provided another opportunity for dye-tracking support operations; however, application and deactivation strategies were designed considering zero-flow conditions within the reach of interest. Therefore, dye was injected at the upstream and downstream boundaries of the rotenone application reach and was used to track movement of water in and out of a treatment reach, allowing proper deactivation to occur and avoiding unnecessary damage to fisheries downstream. The data collected during the real-time tracking operations for both applications allowed full documentation of the rotenone treatment for archival purposes and provided information for future applications. The methods presented in this report for real-time tracking and documentation of piscicide applications in riverine environments worked exceptionally well and allowed the multiagency Asian Carp Rapid Response Workgroup to carry out large-scale rotenone applications in urban waterways in an environmentally responsible manner with minimal collateral damage to fisheries outside the treatment reach. Traveltime information extracted from the boat-mounted and fixed-position fluorometers agrees well with empirical predictions from a preliminary dye study (mock rotenone injection) on this system completed in November 2009 on the CSSC and with previously published methods for estimating traveltimes of the peak, leading edge, and trailing edge of the plume. Although the rotenone application strategy called for zero-flow conditions on the Little Calumet River in 2010, downstream advection of treated water did occur, and dye tracing combined with velocity mapping allowed this advection to be documented and exposed the unique hydrodynamics and mixing within this reach. The large volumes of data collected during the operations allow documentation and visualization of the rotenone applications, thus providing feedback to planners and archival of the treatments for future reference. The methods developed in this report are directly transferrable to piscicide applications in water bodies in other locations, including rivers, ponds, or lakes, and can be used for real-time tracking of any passive contaminant that may enter a water body.

Illinois↗

Epizootiology of viral hemorrhagic septicemia virus in Pacific herring from the spawn-on-kelp fishery in Prince William Sound, Alaska, USA

Both the prevalence and tissue titer of viral hemorrhagic septicemia virus (VHSV) increased in Pacific herring Clupea pallasi following their introduction into net pens (pounds) used in the closed pound spawn-on-kelp (SOK) fishery in Prince William Sound, Alaska. VHSV was also found in water samples from inside and outside the SOK pounds after herring had been confined for several days; however, water samples taken near wild free-ranging, spawning herring either failed to test positive or tested weakly positive for virus. Little or no virus was found in tissue samples from free-ranging, spawning herring captured from the vicinity of the pounds, nor did the prevalence of VHSV increase following spawning as it did in impounded herring. The data indicated that increased prevalences of VHSV were correlated with confinement of herring for the closed pound SOK fishery and that infection was spread within the pounds through waterborne exposure to virus particles originating from impounded fish. In addition, pounds containing predominantly young fish had higher prevalences of VHSV, suggesting that older fish may be partially immune, perhaps as a result of previous infection with the virus. Operation of SOK pounds during spawning seasons in which young herring predominate may amplify the disease and possibly exacerbate the population fluctuations observed in wild herring stocks.

Diseases of Aquatic Organisms↗

Mechanical suppression of northern pike (Esox lucius) populations in small Arizona reservoirs

Introduced populations of northern pike Esox lucius have provided angling opportunities in the western United States (McMahon and Bennett 1996). However, the northern pike is a voracious piscivore and its large size, high fecundity, and broad physiological tolerance make it capable of drastically altering ecosystems it invades (Marchetti et al. 2004). Indeed, predation by northern pike has been shown to significantly alter fish community structure and put native fishes at a higher extinction risk (He and Kitchell 1990, Findlay et al. 2000). Predation by northern pike is viewed as a significant threat to native stocks of salmonids in Washington, British Columbia, and California (McMahon and Bennett 1996, California Department of Fish and Game [CDFG] 2003).

Arizona↗

Variation in movement patterns of red drum (Sciaenops ocellatus) inferred from conventional tagging and ultrasonic telemetry

We used 25 years of conventional tagging data (n=6173 recoveries) and 3 years of ultrasonic telemetry data (n=105 transmitters deployed) to examine movement rates and directional preferences of four age classes of red drum (Sciaenops ocellatus) in estuarine and coastal waters of North Carolina. Movement rates of conventionally tagged red drum were dependent on the age, region, and season of tagging. Age-1 and age-2 red drum tagged along the coast generally moved along the coast, whereas fish tagged in oligohaline waters far from the coast were primarily recovered in coastal regions in fall months. Adult (age-4+) red drum moved from overwintering grounds on the continental shelf through inlets into Pamlico Sound in spring and summer months and departed in fall. Few tagged red drum were recovered in adjacent states (0.6% of all recoveries); however, some adult red drum migrated seasonally from overwintering grounds in coastal North Carolina northward to Virginia in spring, returning in fall. Age-2 transmittertracked red drum displayed seasonal emigration from a small tributary, but upstream and downstream movements within the tributary were correlated with fluctuating salinity regimes and not season. Large-scale conventional tagging and ultrasonic telemetry programs can provide valuable insights into the complex movement patterns of estuarine fish.

North Carolina↗

A national plan for assisting states, federal agencies, and tribes in managing white-nose syndrome in bats

White-nose syndrome (WNS) is a disease responsible for unprecedented mortality in hibernating bats in the northeastern U.S. This previously unrecognized disease has spread very rapidly since its discovery in January 2007, and poses a considerable threat to hibernating bats throughout North America. As WNS spreads, the challenges for understanding and managing the disease continue to increase. Given the escalating complexity of these challenges, a highly coordinated effort is required for State, Federal, and Tribal wildlife agencies, and private partners to respond effectively to WNS and conserve species of bats. The plan proposed herein details the elements that are critical to the investigation and management of WNS, identifies key action items to address stated goals, and outlines the role(s) of agencies and entities involved in this continental effort.

Report↗

Elwha River dam removal: A major opportunity for salmon and steelhead recolonization

In this in-depth paper, authors George R. Pess, Gary A. Winans and Timothy J. Beechie of the NOAA Fisheries, Northwest Fisheries Science Center in Seattle, Samuel J. Brenkman of the National Park Service, Olympic National Park, Michael L. McHenry of the Lower Elwha Klallam Tribe and Jeffrey J. Duda of the U.S. Geological Survey, Western Fisheries Research Center in Seattle, provide an historical overview of the Elwha River system, and its native anadromous fish runs and the prospect of their recolonization after the Elwha and Glines Canyon dams are removed.

Washington↗

Pacific halibut in Glacier Bay National Park, Alaska

The Pacific halibut is a large (up to 3 meters long) predatory fish in the flatfish family. Glacier Bay National Park is the site of extensive and controversial commercial halibut fisheries that began before the park was established in 1925. These fisheries continue despite prohibitive regulations, including the Wilderness Act and National Park Service regulations. Today, more than 70 commercial boats (1991 and 1992 data) harvest between 136,200 and 181,600 kilograms of Pacific halibut per year within the park

Alaska↗

The influence of logjams on largemouth bass ( Micropterus salmoides ) concentrations on the lower Roanoke River, a large sand-bed river

This study examines the relation between logjams and largemouth bass (Micropterus salmoides) on the alluvial sand-bed lower Roanoke River. Disparate data sets from previous bank erosion, fisheries, and large wood studies were used to compare the distribution of largemouth bass with logjam frequency. Logjams are related to the frequency of bank mass wasting increasing from near an upstream dam to the middle reach of the study segment and then decreasing as the river approaches sea level. The highest concentration of largemouth bass and logjams was in the middle reach (110 fish per hour and 21 jams per km). Another measure of largemouth bass distribution, fish biomass density (g h1 ), had a similar trend with logjams and was a better predictor of fish distribution versus logjams (R2= 0.6 and 0.8 and p = 0.08 and 0.02 for fish per hour and g h1 versus logjam, respectively). We theorize that the preference for adult bass to congregate near logjams indicates the use of the jams as feeding areas. The results of a principal component analysis indicate that fish biomass concentration is much more related to logjam frequency than channel geometry (width, depth, and bank height), bed grain size, bank erosion, or turbidity. The results of this research support recent studies on in-channel wood and fisheries: Logjams appear to be important for maintaining, or increasing, both largemouth bass numbers and total biomass of fish in large eastern North American rivers. Persistent logjams, important as habitat, exist where relatively undisturbed river reaches allow for bank erosion inputs of wood and available anchoring locations. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

North Carolina↗

Fishery population and habitat assessment in Puerto Rico streams: Phase 2 final report

This document serves as the Final Report for research on Puerto Rico stream fishes and their habitat funded by the Puerto Rico Department of Natural and Environmental Resources, in the form of a grant to the North Carolina Cooperative Fish and Wildlife Research Unit. This research was also conducted to meet the thesis requirement for a Master of Science degree granted to Elissa Buttermore (Chapters 3–4) and the dissertation requirement for a Doctor of Philospophy degree granted to William Smith (Chapters 5–8). Formatting differs among chapters, as each was developed to target a specific scientific journal and to conform to journal style.

Puerto Rico↗