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At least 1,009 records · Page 56Linked to original sources
USGS2023

White-Nose Syndrome Diagnostic Laboratory Network handbook

When responding to a wildlife disease outbreak, managers depend on consistent and clear data to make decisions. However, diagnostic methods for detecting pathogens of wildlife often lack the level of procedural and interpretational standardization that occurs in the investigation of human and domestic animal diseases. This lack of standardization can hamper diagnostic reliability in two ways. First is the inappropriate application of tests to new species or in situations that are outside of the original (in other words, validated) purpose. Second is the use of laboratory-specific modifications or analytical parameters without thorough investigation of how those changes affect result comparisons across institutions or the ability to make broader conclusions about pathogen or disease. White-nose syndrome (WNS) is a disease caused by the fungal pathogen Pseudogymnoascus destructans ( Pd ), which has spread rapidly and is causing population-level declines in some species of North American bats. During the last decade, quantitative polymerase chain reaction (qPCR) has become the most common method of testing for Pd because of qPCR’s speed, accuracy, and simplicity across a wide range of invasive and noninvasive sample types. Its widespread use by many State, Federal, Provincial, and academic institutions has inevitably led to variations in methodology and interpretation among laboratories. The progressive geographic spread of fungus and disease has also led to sampling contexts and strategies that differ from those for which the qPCR assay was originally developed and validated. These factors have resulted in inconsistencies among results tested in different laboratories and, subsequently, confusion for managers and decision makers. To address these challenges, the WNS National Response Team Diagnostic Working Group launched a project congruent with increased calls for the harmonization of wildlife disease diagnostic results, and reporting standards across disparate methodologies and laboratories. Beginning in 2019, interlaboratory testing was done to better understand how variations to Pd qPCR methodology affect diagnostic consistency and to reassess the assay’s fit for purpose in new testing contexts. This information led to expanded conversations within the Diagnostic Working Group related to best practices in Pd qPCR diagnostic testing, the development of common interpretation language for classifying test results, and the incorporation of that language into an updated WNS case definition. This handbook is the resulting product and is intended to help further harmonize Pd qPCR diagnostic testing by establishing recommendations related to voluntary participation in a WNS Diagnostic Laboratory Network, documenting the currently (2022) practiced Pd qPCR methodologies, discussing general best practices for molecular diagnostics and laboratory networks, and elaborating on the epidemiologic and diagnostic basis of the agreed-upon classification language for Pd qPCR results. Through this voluntary, consensus-based approach to diagnostic harmonization, this work aims to improve the confidence of management agencies in reported Pd qPCR results and can serve as an example of national diagnostic coordination for other unregulated wildlife diseases.

Techniques and Methods↗
USGS2016

Development of working hypotheses linking management of the Missouri River to population dynamics of Scaphirhynchus albus (pallid sturgeon)

This report documents a process of filtering of hypotheses that relate Missouri River Scaphirhynchus albus (pallid sturgeon) population dynamics to management actions including flow alterations, channel reconfigurations, and pallid sturgeon population augmentation. The filtering process was a partnership among U.S. Geological Survey, U.S. Army Corps of Engineers, and U.S. Fish and Wildlife Service to contribute to the Missouri River Recovery Management Plan process. The objective of the filtering process was to produce a set of hypotheses with high relevance to pallid sturgeon population dynamics and decision making on the Missouri River. The Missouri River Pallid Sturgeon Effects Analysis team filtered hundreds of potential hypotheses implicit in conceptual ecological models to develop a set of 40 candidate dominant hypotheses that were identified by experts as being important in pallid sturgeon population dynamics. Using a modified Delphi process and additional expert opinion, the team reduced this set of hypotheses to 23 working dominant hypotheses. We then matched the 23 hypotheses with management actions that could influence the biotic outcomes, resulting in as many as 176 potential effects between management actions and pallid sturgeon in the Missouri River. This number was consolidated to a candidate set of 53 working management hypotheses because some management actions applied to multiple life stages of the pallid sturgeon. We used an additional round of expert surveys to identify a set of 30 working management hypotheses. Finally, the set of working management hypotheses was filtered by the U.S. Army Corps of Engineers, Missouri River Recovery Program for actions that were within the agency’s authority and jurisdiction. This round resulted in a set of 21 hypotheses for initial modeling of linkages from management to pallid sturgeon population responses. The initial set of candidate hypotheses provides a useful starting point for quantitative modeling and adaptive management of the river and species. We anticipate that hypotheses will change from the set of working management hypotheses as adaptive management progresses. More importantly, hypotheses that have been filtered out of our multistep process are still being considered. These filtered hypotheses are archived and if existing hypotheses are determined to be inadequate to explain observed population dynamics, new hypotheses can be created or filtered hypotheses can be reinstated.

Missouri River Basin↗
USGS2014

Report of Committee on Runoff—1944–1945

The membership of the committee has been selected to afford good representation of geographic sections and of organizations engaged in runoff research. Some new members were added during the year in order to strengthen the representation of the committee in certain phases of runoff research. Norbert H. Leupold submitted his resignation in April because his work is no longer directly related to runoff‐research. At the beginning of the year members of the committee met to discuss its setup and plans for the future. The committee has two subcommittees, one dealing with floods and the other with subsurface‐flow. The question was considered whether progress might be facilitated by the addition of one or more additional committees dealing with logical classifications of the subject of runoff. The confusion in nomenclature and terminology relating to runoff was discussed,but it was thought that the present time was not fitting for comprehensive consideration of standardization. It was considered important that the writer of a paper dealing with runoff should make clear the usage of terms he follows In his paper. It was emphasized that there is still an important need for better understanding or liaison between groups dealing with the influence of land use on stream‐flow and those dealing with control and development of streams.

Eos, Transactions, American Geophysical Union↗
USGS2007

Understanding Contaminants Associated with Mineral Deposits

Recent interdisciplinary studies by the U.S. Geological Survey (USGS) have resulted in substantial progress in understanding the processes that control * the release of metals and acidic waters from inactive mines and mineralized areas, * the transport of metals and acidic waters to streams, and * the fate and effect of metals and acidity on downstream ecosystems.

Fact Sheet↗
USGS2014

Impact of stressors on transmission potential of Renibacterium salmoninarum in Chinook salmon

Renibacterium salmoninarum is the causative agent of bacterial kidney disease (BKD) affecting several species of Pacific salmon. The severity of BKD can range from a chronic infection to overt disease with high mortality as in the case of large losses of adult Chinook salmon ( Oncorhynchus tshawytscha ) in the Great Lakes during late 1980s. The goal of this study was to empirically evaluate how environmental stressors relevant to the Great Lakes impact R. salmoninarum disease progression and bacterial shedding, the latter parameter being a proxy of horizontal transmission. In the first study (Aim 1), we focused on how endogenous host thiamine levels and dietary fatty acids impacted resistance of Chinook salmon to R. salmoninarum . Juvenile fish were fed one of four experimental diets, including a (1) thiamine replete diet formulated with fish oil, (2) thiamine deplete diet formulated with fish oil, (3) thiamine replete diet formulated with soybean oil, and (4) thiamine deplete diet formulated with soybean oil, before being challenged with buffer or R. salmoninarum . We observed significantly higher mortality in the R. salmoninarum infected groups relative to the corresponding mock controls in only the thiamine replete diet groups. We also observed a significant effect of time and diet on kidney bacterial load and bacterial shedding, with a significant trend towards higher shedding and bacterial load in the fish oil – thiamine replete diet group. However, during the course of the study, unexpected mortality occurred in all groups attributed to the myxozoan parasite Ceratomyxa shasta . Since the fish were dually-infected with C. shasta , we evaluated parasite DNA levels (parasitic load) in the kidney of sampled fish. We found that parasite load varied across time points but there was no significant effect of diet. However, parasite load did differ significantly between the mock and R. salmoninarum challenge groups with a trend towards longer persistence of C. shasta DNA in fish dually-infected with R. salmoninarum . Overall, results in Aim 1 indicated: 1) that the experimental diets impacted bacterial but not parasitic infection patterns, 2) that low thiamine levels may reduce the severity of R. salmoninarum infection, and 3) that fish infected with R. salmoninarum may be less able to clear a secondary infection with a parasite. The second study (Aim 2) focused on the role that temperature plays in the progression of BKD from the asymptomatic infected state to a diseased state. Lake Michigan Chinook salmon were infected with R. salmoninarum at a common intermediate water temperature and, at 2 weeks post-infection, were split into three temperature groups (cool, intermediate and warm). Fish held at the cool temperature (8°C) had significantly greater mortality following challenge, significantly higher levels of bacteria in the kidney, and shed significantly greater amounts of bacteria into the water relative to fish held at the intermediate (12°C) and warm (15°C) temperatures. Thus, our results support the hypothesis that, for BKD, warm temperature stress does not contribute to greater disease progression and increased bacterial shedding. Our laboratory results are consistent with field epidemiological observations that BKD mortality in the Great Lakes is commonly associated with declining water temperatures in the fall or when water temperatures begin to increase but are still cool after over-wintering.

Report↗
USGS2014

Guidelines for monitoring and adaptively managing restoration of Chinook salmon ( Oncorhynchus tshawytscha ) and steelhead ( O. mykiss ) on the Elwha River

As of January, 2014, the removal of the Elwha and Glines Canyon dams on the Elwha River, Washington, represents the largest dam decommissioning to date in the United States. Dam removal is the single largest step in meeting the goals of the Elwha River Ecosystem and Fisheries Restoration Act of 1992 (The Elwha Act) — full restoration of the Elwha River ecosystem and its native anadromous fisheries (Section 3(a)). However, there is uncertainty about project outcomes with regards to salmon populations, as well as what the ‘best’ management strategy is to fully restore each salmon stock. This uncertainty is due to the magnitude of the action, the large volumes of sediment expected to be released during dam removal, and the duration of the sediment impact period following dam removal. Our task is further complicated by the depleted state of the native salmonid populations remaining in the Elwha, including four federally listed species. This situation lends itself to a monitoring and adaptive management approach to resource management, which allows for flexibility in decision-making processes in the face of uncertain outcomes. The Elwha Monitoring and Adaptive Management (EMAM) guidelines presented in this document provide a framework for developing goals that define project success and for monitoring project implementation and responses, focused upon two federally listed salmon species — Puget Sound Chinook salmon (Oncorhynchus tshawytscha) and Puget Sound steelhead (O. mykiss). The framework also should serve as a guide to help managers adaptively manage fish restoration actions during and following dam removal. The document is organized into seven sections, including an introduction (Section 1), a description of the adaptive management approach (Section 2), suggested modifications to the existing restoration strategy developed in previous Elwha River restoration documents (section 3), specific descriptions of an adaptive management framework, including establishment of goals, performance indicators, and potential adaptive management responses to monitoring information (section 4), monitoring tools and methods for use in evaluating performance and project outcomes (section 5), and brief sections on data record keeping and reporting (Section 6) and an estimated budget (section 7). The purpose of the EMAM guidelines is to propose (1) refinement of existing goals established in previous documents (e.g., Ward et al. (2008), U.S. Department of the Interior, Department of Commerce, and Lower Elwha S’Klallam Tribe (1994)); (2) an adaptive management framework, (3) specific trigger values for relevant performance indicators that guide the adaptive management approach, (4) a specific monitoring strategy for evaluating outcomes of restoration activities; (5) a data management strategy, (6) information needed for adjusting goals when observations indicate conditions are different from anticipated. When taken together, our proposed adaptive management guidelines rely upon setting goals and objectives for each species of interest, which are monitored by relevant performance indicators and measurable trigger values that define success within each phase of the project. The guidelines themselves are arranged in a hierarchy for each species of interest. The levels of this hierarchy are goals, objectives, performance indicators, decision rules, triggers, and decisions (i.e., management/policy response). The monitoring and adaptive management approach provided is based on monitoring several categories of performance indicators, each containing associated ‘trigger’ values which, when met, alters restoration activities (e.g., hatchery releases and/or strategies) through four successive restoration phases. Performance indicators proposed in these EMAM guidelines are based upon Viable Salmon Population (VSP) metrics, including abundance, productivity, distribution, and diversity (McElhany et al. 2000). Trigger values for each performance indicator are developed for four different restoration phases: Preservation, Recolonization, Local Adaptation, and Viable Natural Population. These biologically-based phases each have a set of objectives that are based on resource management scenarios, including the dam removal project itself, which change largely based on the level of active management required and the degree, if any, of resource utilization. Thus, details of prescribed management actions for each phase are based upon different needs specific to that phase. The creation of biologically-based phases is one of the major differences between our proposed EMAM guidelines and previously presented plans for Elwha River Restoration Project management. Changed largely in response to the recommendations of the most recent of three Hatchery Scientific Review Group project reviews (HSRG 2012), the goal-oriented phases replaced the previous system of temporal changes centered around the decommissioning of the dams (i.e., before, during, and after dam removal). By focusing on outcomes associated with rebuilding salmon populations instead of an engineering schedule, the guidelines are more amenable to an adaptive management framework and the ability for management actions to influence outcomes, particularly in the periods during and following dam removal. Trigger values for each performance indicator were generally developed using existing data from the Elwha River watershed, the Puget Sound region, or other Pacific Northwest rivers (i.e., elsewhere in Washington State, Oregon, British Columbia) modified to be relevant for Chinook salmon and steelhead recovery in the Elwha River. By meeting all of the trigger value levels for all performance indicators for a set amount of time within a management phase, the guidelines call for moving to the next phase. This next phase has a new set of trigger values for the same performance indicators. For example, upon moving from the Preservation phase to the Recolonization phase, the trigger value for intrinsic potential increases. Intrinsic potential is a pre-defined estimate of the total extent of available habitat within a watershed for adult and juvenile fish, specific to the target species and is therefore a performance indicator of spatial distribution. By the final Viable Natural Population phase, the entire intrinsic potential of the watershed is being occupied by the species of interest. For those cases when a performance indicator is not exceeding the target value for a particular phase after a certain time period, the trigger values provided in this document, as well as a series of exogenous variables, are explored that may help explain why the performance indicator is not being met. These exogenous variables include variables that are not part of the suite of performance indicators, such as hatchery production, harvest, habitat, and ecosystem indicators. In these cases where the program is stuck in a particular recovery phase, the situation could be caused by the selection of inappropriate trigger values or unforeseen environmental conditions. If the former, adaptive management would call for existing monitoring data to be used for modifying trigger values to an appropriate level. If one of the exogenous variables is found to be preventing the program moving to the next phase, then appropriate changes to management would be advised. For each performance indicator and many of the exogenous variables, a set of monitoring tools were proposed. Data standards were also proposed for data generated by each monitoring tool. Data management, record keeping, and reporting of monitoring and adaptive management activities and results are also outlined. Management of data from the focused monitoring program and documenting the outcomes of trigger value evaluations and associated decisions from the adaptive management approach are key components of the EMAM guidelines. Without a clear history of data generated and adaptive management decisions taken by managers, the ability to learn through adaptive management breaks down. In addition to the long time period involved, another complication is the fact that the data will likely be collected by different federal and state agencies, tribal staff, and others. Having a system of reporting developed should help alleviate potential problems. The restoration of the migration route to spawning and rearing habitats upstream of the former Glines Canyon Dam represents a great opportunity for salmon on the Olympic Peninsula. By removing two aging structures, it will be possible for all 5 species of salmon and steelhead to return to wild stretches of the Elwha River and major floodplain habitat characterized by multiple channels, as well as significant portions of numerous tributaries. Measuring the progress of restoration, from the perspective of both salmon populations and the ecosystem upon which they depend, is a great test for a collaborative team of scientists. The normally challenging conditions of working in a steep gradient, high velocity wilderness river are exacerbated by the release of millions of cubic yards of sediment that had accumulated in the reservoirs. After the first two years of the dam decommissioning process, this release has changed the ecology of the river, estuary, and nearshore habitats downstream of the dams. Our goal in developing the guidelines described is to provide a roadmap for tracking what hopefully will become a successful outcome. If successfully implemented, this information should prove useful as others begin planning for the removal, alteration, or reconstruction of dams throughout North America and elsewhere, an inevitable outcome of an aging dam infrastructure.

Washington↗
USGS1941

Geologic structure and occurrence of gas in part of southwestern New York. Part 1, Structure and gas possibilities of the Oriskany sandstone in Steuben, Yates, and parts of the adjacent counties

The area covered by this report is in southwestern New York and includes a little more than 3,000 square miles in Steuben and Yates counties and parts of the six adjacent counties. This area has been mapped to determine the structural attitude of the exposed rocks, so as to aid those interested in prospecting for natural gas in the Oriskany sandstone of Lower Devonian age. Because of the gentle regional dip toward the southwest, the youngest beds are exposed in the southwest corner of the area, and progressively older beds crop out northeastward in successive bands that strike generally northwest. All the exposed rocks are of Upper Devonian age except those in a narrow belt at the extreme north edge of the area, where a small thickness of Middle Devonian rocks crops out. The maximum thickness of beds so exposed is nearly 4,000 feet, of which the lower part is predominantly soft dark shale and the upper part predominantly fine-grained sandstone and gray shale. All the beds are marine except a few tongues of continental deposits red shale and sandstone and gray mudstone in the youngest beds. All the beds thicken southeastward, so that there is a northwestward convergence between any two lithologic units in the series. More than 30 key horizons that are persistent and distinctive were mapped, and altitudes on these key horizons served as a basis for constructing the structure contour map. Many of the key horizons are formation or member boundaries, but others are the tops or bottoms of limestone or sandstone beds within formations. All the stratigraphic units mapped are purely lithologic. (See pi. 2.) The Tully limestone, which crops out along the northern border of the area, is an easily recognizable and therefore valuable key bed for subsurface correlations in this part of the State. Below the Tully limestone is a thick body of Middle Devonian shales of the Hamilton group which rests on another valuable key bed, the hard, cherty Onondaga limestone, also of Middle Devonian age. Below the Onondaga limestone is the Lower Devonian Oriskany sandstone, which is the gas-producing bed. Unlike the Onondaga, the Oriskany is locally thin or absent. The structure of most of the area is shown by contour lines at 25-foot intervals, but where key horizons are lacking the structure is indicated by dip symbols. Upon the regional south and southwest dip are superposed numerous gentle folds whose axes trend approximately northeastward in the greater part of the area but more nearly eastward in the eastern part. The folds generally tend to become narrower and steeper, and therefore more closely spaced, southwestward. Many of the anticlines fork southwestward, whereas the synclines. tend to fork northeastward. All the folds have a westward or southwestward plunge. Throughout the area the rocks are jointed in two dominant sets one that trends northwest and the other east or northeast. No evident relation .between these joints, which were measured only in the hard, relatively brittle beds, and the individual folds or domes was discernible. The faults are concentrated in the northeastern and southwestern parts of the area and trend either northeastward or northwestward. Some are nearly vertical normal faults; others are steep reverse faults. Subsurface data show that most of the faults increase in throw downward and also that many subsurface faults do not reach the surface. A group of faults in the northwestern part of the Greenwood quadrangle and the southwestern part of the Hornell quadrangle were active during Upper Devonian time, while the Gowanda shale and overlying beds were being deposited. At this stratigraphic horizon the beds in a zone a few hundred feet thick are highly deformed in a wide belt on both sides of the faults. Sandstone layers are thinned out into long stringers or swollen into thick masses and in places are bent acutely without fracture. Thin layers of shale, coquina, and sand have flowed together into intricately plicated zones that lack cleavage and joints. These features show that the sediments were deformed while wet and plastic and buried only a little way below the sea floor. The beds that were laid down over these disturbed zones were not involved in this deformation. Many of the sharper flexures and most of the faults are not evident in the beds several hundred feet stratigraphically higher. Accordingly, broad, gentle folds in these higher beds in parts of the area south and west of the northwest corner of the Greenwood quadrangle may conceal, at considerable depths below them, narrow folds separated by abrupt flexures or faults. Several of the larger streams and rivers occupy strike valleys, and their j courses swing to follow the changing strike of the rocks where they cross ( successive folds. But, with few exceptions, the small streams are not adjusted to the bedrock structure. Domes likely to serve as traps for natural gas are concentrated in the northeastern and southwestern parts of the area. The Wayne-Dundee gas field is in the northeastern part. All the other potentially valuable domes in this part of the area have been drilled and found valueless except one small structural feature in the southern part of the Ovid quadrangle, which, if the Oriskany is present, may trap a small quantity of gas. In the Greenwood quadrangle in the southwestern part of the area there is one gas field and four well-defined domes, all of which may be productive if the Oriskany sandstone is present. In the northwest corner of the quadrangle the dips indicate at least two domes that can be adequately defined and evaluated only by geophysical prospecting. The State Line gas field is in tbe Wellsville quadrangle. In the southeast corner of this quadrangle there are three other domes of comparable size that may also be productive if underlain by the Oriskany sandstone. At other places in the Wellsville quadrangle the dips suggest several anticlinal axes on which analogous productive domes maybe found. The structural features in this quadrangle, however, are defined by contours only in the southeastern part. In the Woodhull quadrangle a large dome east of Jasper may be productive, and the western top of the large Woodhull dome in the southwestern part of the quadrangle seems to warrant drilling, despite the absence of the Oriskany in a well on the eastern top. Two wells drilled in 1936 and 1937 a little northeast of a broad, nearly flat-topped dome in the Hornell quadrangle, a few miles east of Hornell,, struck small flows of gas, suggesting that wells drilled higher on this dome may be productive. In much of the southwestern part of the area seismograph surveys should be of great value in determining the structure at the Tully and Onondaga horizons. Without abundant subsurface control of this sort, the danger of drilling into subsurface faults can hardly be overemphasized. Three closed or nearly closed synclines in the Greenwood and Wellsville quadrangles appear to be favorable places to drill for oil in the shallow sands presumably parts of the Dunkirk sandstone.

New York↗
USGS1941

Geologic structure and occurrence of gas in part of southwestern New York

The area covered by this report is in southwestern New York and includes a little more than 3,000 square miles in Steuben and Yates counties and parts of the six adjacent counties. This area has been mapped to determine the structural attitude of the exposed rocks, so as to aid those interested in prospecting for natural gas in the Oriskany sandstone of Lower Devonian age. Because of the gentle regional dip toward the southwest, the youngest beds are exposed in the southwest corner of the area, and progressively older beds crop out northeastward in successive bands that strike generally northwest. All the exposed rocks are of Upper Devonian age except those in a narrow belt at the extreme north edge of the area, where a small thickness of Middle Devonian rocks crops out. The maximum thickness of beds so exposed is nearly 4,000 feet, of which the lower part is predominantly soft dark shale and the upper part predominantly fine-grained sandstone and gray shale. All the beds are marine except a few tongues of continental deposits—red shale and sandstone and gray mudstone—in the youngest beds. All the beds thicken southeastward, so that there is a northwestward convergence between any two lithologic units in the series. More than 30 key horizons that are persistent and distinctive were mapped, and altitudes on these key horizons served as a basis for constructing the structure contour map. Many of the key horizons are formation or member boundaries, but others are the tops or bottoms of limestone or sandstone beds within formations. All the stratigraphic units mapped are purely lithologic. (See pl. 2.) The Tully limestone, which crops out along the northern border of the area, is an easily recognizable and therefore valuable key bed for subsurface correlations in this part of the State. Below the Tully limestone is a thick body of Middle Devonian shales of the Hamilton group which rests on another valuable key bed, the hard, cherty Onondaga limestone, also of Middle Devonian age. Below the Onondaga limestone is the Lower Devonian Oriskany sandstone, which is the gas-producing bed. Unlike the Onondaga, the Oriskany is locally thin or absent. The structure of most of the area is shown by contour lines at 25-foot intervals, but, where key horizons are lacking the structure is indicated by dip symbols. Upon the regional south and southwest dip are superposed numerous gentle folds whose axes trend approximately northeastward in the greater part of the area but more nearly eastward in the eastern part. The folds generally tend to become narrower and steeper, and therefore more closely spaced, southwestward. Many of the anticlines fork southwestward, whereas the synclines tend to fork northeastward. All the folds have a westward or southwestward plunge. Throughout the area the rocks are jointed in two dominant sets—one that trends northwest and the other east or northeast. No evident relation between these joints, which were measured only in the hard, relatively brittle beds, and the individual folds or domes was discernible. The faults are concentrated in the northeastern and southwestern parts of the area and trend either northeastward or northwestward. Some are nearly vertical normal faults ; others are steep reverse faults. Subsurface data show that most of the faults increase in throw downward and also that many subsurface faults do not reach the surface. A group of faults in the northwestern part of the Greenwood quadrangle and the southwestern part of the Hornell quadrangle were active during Upper Devonian time, while the Gowanda shale and overlying beds were being deposited. At this stratigraphic horizon the beds in a zone a few hundred feet thick are highly deformed in a wide belt on both sides of the faults. Sandstone layers are thinned out into long stringers or swollen into thick masses and in places are bent acutely without fracture. Thin layers of shale, coquina, and sand have flowed together into intricately plicated zones that lack cleavage and joints. These features show that the sediments were deformed while wet and plastic and buried only a little way below the sea floor. The beds that were laid down over these disturbed zones were not involved in this deformation. Many of the sharper flexures and most of the faults are not evident in the beds several hundred feet stratigraphically higher. Accordingly, broad, gentle folds in these higher beds in parts of the area south and west of the northwest corner of the Greenwood quadrangle may conceal, at considerable depths below them, narrow folds separated by abrupt flexures or faults. Several of the larger streams and rivers occupy strike valleys, and their courses swing to follow the changing strike of the rocks where they cross successive folds. But, with few exceptions, the small streams are not adjusted to the bedrock structure. Domes likely to serve as traps for natural gas are concentrated in the northeastern and southwestern parts of the area. The Wayne-Dundee gas field is in the northeastern part. All the other potentially valuable domes in this part of the area have been drilled and found valueless except one small structural feature in the southern part of the Ovid quadrangle, which, if the Oriskany is present, may trap a small quantity of gas. In the Greenwood quadrangle in the southwestern part of the area there is one gas field and four well-defined domes, all of which may be productive if the Oriskany sandstone is present. In the northwest corner of the quadrangle the dips indicate at least two domes that can be adequately defined and evaluated only by geophysical prospecting. The State Line gas field is in the Wellsville quadrangle. In the southeast corner of this quadrangle there are three other domes of comparable size that may also be productive if underlain by the Oriskany sandstone. At other places in the Wellsville quadrangle the dips suggest several anticlinal axes on which analogous productive domes may be found. The structural features in this quadrangle, however, are defined by contours only in the southeastern part. In the Woodhull quadrangle a large dome east of Jasper may be productive, and the western top of the large Wood-hull dome in the southwestern part of the quadrangle seems to warrant drilling, despite the absence of the Oriskany in a well on the eastern top. Two wells drilled in 1936 and 1937 a little northeast of a broad, nearly flat-topped dome in the Hornell quadrangle, a few miles east of Hornell, struck small flows of gas, suggesting that wells drilled higher on this dome may be productive. In much of the southwestern part of the area seismograph surveys should be of great value in determining the structure at the Tully and Onondaga horizons. Without abundant subsurface control of this sort, the danger of drilling into subsurface faults can hardly be overemphasized. Three closed or nearly closed synclines in the Greenwood and Wellsville quadrangles appear to be favorable places to drill for oil in the shallow sands— presumably parts of the Dunkirk sandstone.

New York↗
USGS1995

Partnerships for progress at the U.S. Geological Survey

This is about opportunity for the private sector. It is about combining the research capabilities of Government scientists with the commercial development potential of private companies. It is, consequently, about partnerships leading to products and services to enhance the quality of life and strengthen the American economy.

Monograph↗
USGS1971

The drainage and glacial history of the Still River Valley, southwestern Connecticut

The Still River is located in southwestern Connecticut. From its origin on the New York border, it passes through Danbury and flows northward to its junction with the Housatonic River in New Milford. Interpretation of the Still River's history is based on its surficial geology and bedrock topography. High bedrock surfaces to the south, east, and west of the river show that its preglacial direction was probably to the north. The Still River has developed along the easily eroded Inwood Marble as a subsequent tributary to the Housatonic. Pleistocene glaciation left a variety of deposits in the Still Valley. The oldest of these is the 'lower' till, of either Illinoian or Altonian age. This till unit is overlain in turn by the Woodfordian 'upper' till. The upper till has basal and ablation facies. Ice-contact deposits formed in the fringing stagnation zone of the last retreating ice sheet. As the glacier withdrew along the Still Valley, preglacial Lake Danbury was impounded against the highlands to the south. Glacial retreat opened progressively lower outlets for this lake. Its final stage was contained by a till (?) barrier at the Housatonic Gorge in New Milford. Filling of the lake by glacial outwash was soon followed by downcutting of the dam and establishment of the modern Housatonic and Still River channels.

Open-File Report↗
USGS2020

Geologic map of the Bonanza caldera area, northeastern San Juan Mountains, Colorado

The San Juan Mountains in southwestern Colorado have long been known as a site of exceptionally voluminous mid-Tertiary volcanism, including at least 22 major ignimbrite sheets (each 150–5,000 km³) and associated caldera structures active at 34–23 Ma. Recent volcanologic and petrologic studies in the San Juan region have focused mainly on several ignimbrite-caldera systems: the southeastern area (Platoro complex), western calderas (Uncompahgre-Silverton-Lake City), and the central cluster (La Garita-Creede calderas). Far less studied has been the northeastern San Juan region, which occupies a transition between earlier volcanism in central Colorado and large-volume younger ignimbrite-caldera foci farther south and west. This map is based on new field coverage of volcanic rocks in thirteen 7.5' quadrangles in northeastern parts of the volcanic field, high-resolution age determinations for 130 sites, and petrologic studies involving several hundred new chemical analyses. This mapping and the accompanying lab results (1) document volcanic evolution of the deeply eroded Bonanza caldera that exposes unique features not previously described from ignimbrite calderas elsewhere, as well as the previously unstudied Marshall Pass caldera; (2) provide unique cross-sectional exposures of the steeply resurgent Bonanza caldera, from volcanic floor and underlying basement rocks through a complete 3.5-km-thick section of intracaldera ignimbrite and overlying compositionally diverse caldera-filling lavas; (3) document timing of caldera collapse concurrently with eruption of about 1,000 km 3 of ignimbrite that oscillated in composition from mafic dacite to rhyolite; (4) quantify the regional time-space-volume progression from the earlier Sawatch magmatic trend southward into the San Juan region; and (5) permit more rigorous comparison between the broad mid-Tertiary magmatic belt in the western U.S. Cordillera and the type continental-margin arc volcanism of the central Andes in South America.

Scientific Investigations Map↗
USGS2024

Statistical analysis of Lake Tahoe secchi depth data

Secchi depth measurements in Lake Tahoe have been collected at a Long-Term Profile (LTP) monitoring site since 1968. Periodic updates in Secchi trend analysis are needed to understand changes in the long-term record, changes in seasonal pattern, and to provide insight into the progress of restoration efforts in improving lake clarity. As such, this analysis is intended to evaluate the long-term and seasonal clarity conditions by updating the analysis by Jassby and others, (1999) and to demonstrate the use of statistical measures as metrics for comparing ongoing monitoring data (Watanabe, 2024).

California, Nevada↗
USGS2017

Suitability of river delta sediment as proppant, Missouri and Niobrara Rivers, Nebraska and South Dakota, 2015

Sediment management is a challenge faced by reservoir managers who have several potential options, including dredging, for mitigation of storage capacity lost to sedimentation. As sediment is removed from reservoir storage, potential use of the sediment for socioeconomic or ecological benefit could potentially defray some costs of its removal. Rivers that transport a sandy sediment load will deposit the sand load along a reservoir-headwaters reach where the current of the river slackens progressively as its bed approaches and then descends below the reservoir water level. Given a rare combination of factors, a reservoir deposit of alluvial sand has potential to be suitable for use as proppant for hydraulic fracturing in unconventional oil and gas development. In 2015, the U.S. Geological Survey began a program of researching potential sources of proppant sand from reservoirs, with an initial focus on the Missouri River subbasins that receive sand loads from the Nebraska Sand Hills. This report documents the methods and results of assessments of the suitability of river delta sediment as proppant for a pilot study area in the delta headwaters of Lewis and Clark Lake, Nebraska and South Dakota. Results from surface-geophysical surveys of electrical resistivity guided borings to collect 3.7-meter long cores at 25 sites on delta sandbars using the direct-push method to recover duplicate, 3.8-centimeter-diameter cores in April 2015. In addition, the U.S. Geological Survey collected samples of upstream sand sources in the lower Niobrara River valley. At the laboratory, samples were dried, weighed, washed, dried, and weighed again. Exploratory analysis of natural sand for determining its suitability as a proppant involved application of a modified subset of the standard protocols known as American Petroleum Institute (API) Recommended Practice (RP) 19C. The RP19C methods were not intended for exploration-stage evaluation of raw materials. Results for the washed samples are not directly applicable to evaluations of suitability for use as fracture sand because, except for particle-size distribution, the API-recommended practices for assessing proppant properties (sphericity, roundness, bulk density, and crush resistance) require testing of specific proppant size classes. An optical imaging particle-size analyzer was used to make measurements of particle-size distribution and particle shape. Measured samples were sieved to separate the dominant-size fraction, and the separated subsample was further tested for roundness, sphericity, bulk density, and crush resistance. For the bulk washed samples collected from the Missouri River delta, the geometric mean size averaged 0.27 millimeters (mm), 80 percent of the samples were predominantly sand in the API 40/70 size class, and 17 percent were predominantly sand in the API 70/140 size class. Distributions of geometric mean size among the four sandbar complexes were similar, but samples collected from sandbar complex B were slightly coarser sand than those from the other three complexes. The average geometric mean sizes among the four sandbar complexes ranged only from 0.26 to 0.30 mm. For 22 main-stem sampling locations along the lower Niobrara River, geometric mean size averaged 0.26 mm, an average of 61 percent was sand in the API 40/70 size class, and 28 percent was sand in the API 70/140 size class. Average composition for lower Niobrara River samples was 48 percent medium sand, 37 percent fine sand, and about 7 percent each very fine sand and coarse sand fractions. On average, samples were moderately well sorted. Particle shape and strength were assessed for the dominant-size class of each sample. For proppant strength, crush resistance was tested at a predetermined level of stress (34.5 megapascals [MPa], or 5,000 pounds-force per square inch). To meet the API minimum requirement for proppant, after the crush test not more than 10 percent of the tested sample should be finer than the precrush dominant-size class. For particle shape, all samples surpassed the recommended minimum criteria for sphericity and roundness, with most samples being well-rounded. For proppant strength, of 57 crush-resistance tested Missouri River delta samples of 40/70-sized sand, 23 (40 percent) were interpreted as meeting the minimum criterion at 34.5 MPa, or 5,000 pounds-force per square inch. Of 12 tested samples of 70/140-sized sand, 9 (75 percent) of the Missouri River delta samples had less than 10 percent fines by volume following crush testing, achieving the minimum criterion at 34.5 MPa. Crush resistance for delta samples was strongest at sandbar complex A, where 67 percent of tested samples met the 10-percent fines criterion at the 34.5-MPa threshold. This frequency was higher than was indicated by samples from sandbar complexes B, C, and D that had rates of 50, 46, and 42 percent, respectively. The group of sandbar complex A samples also contained the largest percentages of samples dominated by the API 70/140 size class, which overall had a higher percentage of samples meeting the minimum criterion compared to samples dominated by coarser size classes; however, samples from sandbar complex A that had the API 40/70 size class tested also had a higher rate for meeting the minimum criterion (57 percent) than did samples from sandbar complexes B, C, and D (50, 43, and 40 percent, respectively). For samples collected along the lower Niobrara River, of the 25 tested samples of 40/70-sized sand, 9 samples passed the API minimum criterion at 34.5 MPa, but only 3 samples passed the more-stringent criterion of 8 percent postcrush fines. All four tested samples of 70/140 sand passed the minimum criterion at 34.5 MPa, with postcrush fines percentage of at most 4.1 percent. For two reaches of the lower Niobrara River, where hydraulic sorting was energized artificially by the hydraulic head drop at and immediately downstream from Spencer Dam, suitability of channel deposits for potential use as fracture sand was confirmed by test results. All reach A washed samples were well-rounded and had sphericity scores above 0.65, and samples for 80 percent of sampled locations met the crush-resistance criterion at the 34.5-MPa stress level. A conservative lower-bound estimate of sand volume in the reach A deposits was about 86,000 cubic meters. All reach B samples were well-rounded but sphericity averaged 0.63, a little less than the average for upstream reaches A and SP. All four samples tested passed the crush-resistance test at 34.5 MPa. Of three reach B sandbars, two had no more than 3 percent fines after the crush test, surpassing more stringent criteria for crush resistance that accept a maximum of 6 percent fines following the crush test for the API 70/140 size class. Relative to the crush-resistance test results for the API 40/70 size fraction of two samples of mine output from Loup River settling-basin dredge spoils near Genoa, Nebr., four of five reach A sample locations compared favorably. The four samples had increases in fines composition of 1.6–5.9 percentage points, whereas fines in the two mine-output samples increased by an average 6.8 percentage points.

Nebraska, South Dakota↗
USGS2019

Deep convolutional neural networks for map-type classification

Maps are an important medium that enable people to comprehensively understand the configuration of cultural activities and natural elements over different times and places. Although a massive number of maps are available in the digital era, how to effectively and accurately locate and access the desired map on the Internet remains a challenge today. Previous works partially related to map-type classification mainly focused on map comparison and map matching at the local scale. The features derived from local map areas might be insufficient to characterize map content. To facilitate establishing an automatic approach for accessing the needed map, this paper reports our investigation into using deep learning techniques to recognize seven types of map, including topographic, terrain, physical, urban scene, the National Map, 3D, nighttime, orthophoto, and land cover classification. Experimental results show that the state-of-the-art deep convolutional neural networks can support automatic map-type classification. Additionally, the classification accuracy varies according to different map-types. This work can contribute to the implementation of deep learning techniques in the cartographic community and advance the progress of Geographical Artificial Intelligence (GeoAI).

Conference Paper↗
USGS2010

Final report: Baseline selenium monitoring of agricultural drains operated by the Imperial Irrigation District in the Salton Sea Basin

This report summarizes comprehensive findings from a 4-year-long field investigation to document baseline environmental conditions in 29 agricultural drains and ponds operated by the Imperial Irrigation District along the southern border of the Salton Sea. Routine water-quality collections and fish community assessments were conducted on as many as 16 sampling dates at roughly quarterly intervals from July 2005 to April 2009. The water-quality measurements included total suspended solids and total (particulate plus dissolved) selenium. With one exception, fish were surveyed with baited minnow traps at quarterly intervals during the same time period. However, in July 2007, fish surveys were not conducted because we lacked permission from the California Department of Fish and Game for incidental take of desert pupfish ( Cyprinodon macularius ), an endangered species. During April and October 2006–08, water samples also were collected from seven intensively monitored drains (which were selected from the 29 total drains) for measurement of particulate and dissolved selenium, including inorganic and organic fractions. In addition, sediment, aquatic food chain matrices [particulate organic detritus, filamentous algae, net plankton, and midge (chironomid) larvae], and two fish species (western mosquitofish, Gambusia affinis ; and sailfin molly, Poecilia latipinna ) were sampled from the seven drains for measurement of total selenium concentrations. The mosquitofish and mollies were intended to serve as surrogates for pupfish, which we were not permitted to sacrifice for selenium determinations. Water quality (temperature, dissolved oxygen, pH, specific conductance, and turbidity) values were typical of surface waters in a hot, arid climate. A few drains exhibited brackish, near-anoxic conditions, especially during summer and fall when water temperatures occasionally exceeded 30 degrees Celsius. Total selenium concentrations in water were directly correlated with salinity and inversely correlated with total suspended-solids concentrations. Although pupfish were found in several drains, sometimes in relatively high numbers, the fish faunas of most drains and ponds were dominated by nonnative species, especially mosquitofish, mollies, and red shiner ( Cyprinella lutrensis ). Dissolved selenium in water samples from the seven intensively monitored drains ranged from 0.700 to 32.8 micrograms per liter (?g/L), with selenate as the major constituent. Selenium concentrations in other matrices varied widely among drains and ponds, with one drain (Trifolium 18) exhibiting especially high concentrations in food chain matrices [particulate organic detritus, 5.98–58.0 micrograms of selenium per gram (?g Se/g); midge larvae, 12.7–50.6 ?g Se/g] and in fish (mosquitofish, 13.2–20.2 ?g Se/g; sailfin mollies, 12.8–30.4 ?g Se/g; all concentrations are based on dry weights). Although selenium was accumulated by all trophic levels, biomagnification (defined as a progressive increase in selenium concentration from one trophic level to the next higher level) in midge larvae and fish occurred only at lower exposure concentrations. Judging mostly from circumstantial evidence, the health and wellbeing of poeciliids and pupfish are not believed to be threatened by ambient exposure to selenium in the drains and ponds.

California↗
USGS1952

An interim report on gill disease

GILL DISEASE among fish, a disease which is characterized by a proliferation of the gill epithelium, has been attributed to a number of different causes. Generally, there are two recognized types: the eastern or bacterial type, in which long filamentous bacteria can always be demonstrated; and the western type, in which, by definition, bacteria cannot be demonstrated.

Progressive Fish-Culturist↗
USGS2002

Changes in ground-water quality in the Canal Creek Aquifer between 1995 and 2000-2001, West Branch Canal Creek area, Aberdeen Proving Ground, Maryland

Since 1917, Aberdeen Proving Ground, Maryland has been the primary chemical-warfare research and development center for the U.S. Army. Ground-water contamination has been documented in the Canal Creek aquifer because of past disposal of chemical and ordnance manufacturing waste. Comprehensive sampling for volatile organic compounds in ground water by the U.S. Geological Survey in the West Branch Canal Creek area was done in June?October 1995 and June?August 2000. The purpose of this report is (1) to compare volatile organic compound concentrations and determine changes in the ground-water contaminant plumes along two cross sections between 1995 and 2000, and (2) to incorporate data from new piezometers sampled in spring 2001 into the plume descriptions. Along the southern cross section, total concentrations of volatile organic compounds in 1995 were determined to be highest in the landfill area east of the wetland (5,200 micrograms per liter), and concentrations were next highest deep in the aquifer near the center of the wetland (3,300 micrograms per liter at 35 feet below land surface). When new piezometers were sampled in 2001, higher carbon tetrachloride and chloroform concentrations (2,000 and 2,900 micrograms per liter) were detected deep in the aquifer 38 feet below land surface, west of the 1995 sampling. A deep area in the aquifer close to the eastern edge of the wetland and a shallow area just east of the creek channel showed declines in total volatile organic compound concentrations of more than 25 percent, whereas between those two areas, con-centrations generally showed an increase of greater than 25 percent between 1995 and 2000. Along the northern cross section, total concentrations of volatile organic compounds in ground water in both 1995 and 2000 were determined to be highest (greater than 2,000 micrograms per liter) in piezometers located on the east side of the section, farthest from the creek channel, and concentrations were progressively lower at piezometer locations closer to the creek channel. Total volatile organic compound concentrations increased more than 25 percent in some areas in the middle depths of the aquifer; however, it could not be determined if a defined plume was moving farther downgradient along ground-water flow paths toward the creek channel, or vertically downward because of density differences within the aquifer.

Water-Resources Investigations Report↗
USGS2017

Eruptive history, geochronology, and post-eruption structural evolution of the late Eocene Hall Creek Caldera, Toiyabe Range, Nevada

The magmatic, tectonic, and topographic evolution of what is now the northern Great Basin remains controversial, notably the temporal and spatial relation between magmatism and extensional faulting. This controversy is exemplified in the northern Toiyabe Range of central Nevada, where previous geologic mapping suggested the presence of a caldera that sourced the late Eocene (34.0 mega-annum [Ma]) tuff of Hall Creek. This region was also inferred to be the locus of large-magnitude middle Tertiary extension (more than 100 percent strain) localized along the Bernd Canyon detachment fault, and to be the approximate location of a middle Tertiary paleodivide that separated east and west-draining paleovalleys. Geologic mapping, 40 Ar/ 39 Ar dating, and geochemical analyses document the geologic history and extent of the Hall Creek caldera, define the regional paleotopography at the time it formed, and clarify the timing and kinematics of post-caldera extensional faulting. During and after late Eocene volcanism, the northern Toiyabe Range was characterized by an east-west trending ridge in the area of present-day Mount Callaghan, probably localized along a Mesozoic anticline. Andesite lava flows erupted around 35–34 Ma ponded hundreds of meters thick in the erosional low areas surrounding this structural high, particularly in the Simpson Park Mountains. The Hall Creek caldera formed ca. 34.0 Ma during eruption of the approximately 400 cubic kilometers (km 3 ) tuff of Hall Creek, a moderately crystal-rich rhyolite (71–77 percent SiO 2 ) ash-flow tuff. Caldera collapse was piston-like with an intact floor block, and the caldera filled with thick (approximately 2,600 meters) intracaldera tuff and interbedded breccia lenses shed from the caldera walls. The most extensive exposed megabreccia deposits are concentrated on or close to the caldera floor in the southwestern part of the caldera. Both silicic and intermediate post-caldera lavas were locally erupted within 400 thousand years of the main eruption, and for the next approximately 10 million years sedimentary rocks and distal tuffs sourced from calderas farther west ponded in the caldera basin surrounding low areas nearby. Patterns of tuff deposition indicate that the area was characterized by east-west trending paleovalleys and ridges in the late Eocene and Oligocene, which permitted tuffs to disperse east-west but limited their north-south extent. Although a low-angle fault contact of limited extent separates Cambrian and Ordovician strata in the southwestern part of the study area, there is no evidence that this fault cuts overlying Tertiary rocks. Total extensional strain across the caldera is on the order of 15 percent, and there is no evidence for progressive tilting of 34–25 Ma rocks that would indicate protracted Eocene–Oligocene extension. The caldera appears to have been tilted as an intact block after 25 Ma, probably during the middle Miocene extensional faulting well documented to the north and south of the study area.

Nevada↗