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Vertical velocity variance in the mixed layer from radar wind profilers

Vertical velocity variance data were derived from remotely sensed mixed layer turbulence measurements at the Atmospheric Boundary Layer Experiments (ABLE) facility in Butler County, Kansas. These measurements and associated data were provided by a collection of instruments that included two 915 MHz wind profilers, two radio acoustic sounding systems, and two eddy correlation devices. The data from these devices were available through the Atmospheric Boundary Layer Experiment (ABLE) database operated by Argonne National Laboratory. A signal processing procedure outlined by Angevine et al. was adapted and further built upon to derive vertical velocity variance, w_pm???2, from 915 MHz wind profiler measurements in the mixed layer. The proposed procedure consisted of the application of a height-dependent signal-to-noise ratio (SNR) filter, removal of outliers plus and minus two standard deviations about the mean on the spectral width squared, and removal of the effects of beam broadening and vertical shearing of horizontal winds. The scatter associated with w_pm???2 was mainly affected by the choice of SNR filter cutoff values. Several different sets of cutoff values were considered, and the optimal one was selected which reduced the overall scatter on w_pm???2 and yet retained a sufficient number of data points to average. A similarity relationship of w_pm???2 versus height was established for the mixed layer on the basis of the available data. A strong link between the SNR and growth/decay phases of turbulence was identified. Thus, the mid to late afternoon hours, when strong surface heating occurred, were observed to produce the highest quality signals.

Journal of Hydrologic Engineering↗

Effect of temporal resolution on the accuracy of ADCP measurements

The application of acoustic Doppler current profilers (ADCP's) in river flow measurements is promoting a great deal of progress in hydrometry. ADCP's not only require shorter times to collect data than traditional current meters, but also allow streamflow measurements at sites where the use of conventional meters is either very expensive, unsafe, or simply not possible. Moreover, ADCP's seem to offer a means for collecting flow data with spatial and temporal resolutions that cannot be achieved with traditional current-meters. High-resolution data is essential to characterize the mean flow and turbulence structure of streams, which can in turn lead to a better understanding of the hydrodynamic and transport processes in rivers. However, to properly characterize the mean flow and turbulence intensities of stationary flows in natural turbulent boundary layers, velocities need to be sampled over a long-enough time span. The question then arises, how long should velocities be sampled in the flow field to achieve an adequate temporal resolution? Theoretically, since velocities cannot be sampled over an infinitely long time interval, the error due to finite integration time must be considered. This error can be estimated using the integral time scale. The integral time scale is not only a measure of the time interval over which a fluctuating function is correlated with itself but also a measure of the time span over which the function is dependent on itself. This time scale, however, is not a constant but varies spatially in the flow field. In this paper we present an analysis of the effect of the temporal resolution (sampling time span) on the accuracy of ADCP measurements based on the integral time scale. Single ping velocity profiles collected with frequencies of 1 Hz in the Chicago River at Columbus Drive using an uplooking 600 kHz ADCP are used in this analysis. The integral time scale at different depths is estimated based on the autocorrelation function of the velocity fluctuations and is used to evaluate the mean-square error as a function of the integration time. The implications of these errors in typical ADCP measurements for discharge estimates in natural streams are discussed. Copyright ASCE 2004.

Conference Paper↗

Modeling and model validation of wind-driven circulation in Upper Klamath Lake, Oregon

The hydrodynamics in the Upper Klamath Lake (UKL) plays a significant role in the water quality conditions of the lake. In order to provide a quantitative evaluation of the impacts of hydrodynamics on water quality in UKL, a detailed hydrodynamic model was implemented using an unstructured grid 3-D hydrodynamic model known as the UnTRIM model. The circulation in UKL is driven primarily by wind. Wind speed and direction time-series records were used as input, the numerical model reproduced the wind "set-up" and "set-down" at down wind and upwind ends of the lake, respectively. Of the two acoustic Doppler current profiler (ADCP) records, the UnTRIM model reproduced the measured velocity at the deep station. At the shallow station, the model results showed diurnal patterns that correlated well with wind variations, but the measured velocity showed water velocity sustained at 3 to 5 cm/sec or above. Discrepancies between the model results and observations at the shallow ADCP station is discussed on the basis of correct physics. If the field measurements are inconsistent with the known physics, there exists the possibility that the field data are suspect or the field data are revealing some physical processes that are not yet understood. Copyright ASCE 2005.

Conference Paper↗

Characterizing a December 2005 density current event in the Chicago River, Chicago, Illinois

During the winter months, the Chicago River in Chicago, Illinois is subject to bi-directional flows, and density currents are thought to be responsible for these flow variations. This paper presents detailed field measurements using three acoustic Doppler current profiler instruments and simultaneous water-quality measurements made during December 2005. Observations indicate that the formation of density currents within the Chicago River and density differences are mostly due to salinity differences between the North Branch and the main stem of the Chicago River, whereas temperature difference does not appreciably affect the creation of density currents. Sources of higher water temperature, conductivity, and salinity values should be addressed in future studies. ?? 2007 ASCE.

Conference Paper↗

ADV point measurements within rapids of the Colorado River in Grand Canyon

Rapids on the Colorado River in Grand Canyon attract over 20,000 white-water enthusiasts a year and are considered one of the premiere collections of rapids in North America. While this collection of rapids is an important recreational resource, relatively little is known of the specific hydraulics of individual rapids. Flow measurements are occasionally made in the low-velocity reaches between rapids, but the turbulent and dangerous nature of rapids makes in-situ data collection challenging. The present study measured hydraulics within a small rapid in Grand Canyon as well as an alluvial reach of the Colorado River in Glen Canyon using a Sontek Argonaut acoustic Doppler velocimeter (ADV) 2 . The ADV was mounted near the center-front of a motor-powered 19-foot J-snout boat; the instrument sample volume was located 80 cm below the surface. The quality of the measurements was best in the slower water above the rapid and in Glen Canyon. Waves, aeration, and high-velocity water rendered specific measurements in the core of the rapid difficult as the ADV instrument could only measure velocities less than about 3.0 m/s. Nonetheless, velocity, bathymetry, and water-surface maps were constructed for the rapid and the reach in Glen Canyon. The compiled data sets can be used for predicting the erosion potential of debris fans forming the rapid and the development of numerical models to better characterize rapids.

Colorado↗

USGS advances in integrated, high-resolution sea-floor mapping: inner continental shelf to estuaries

The U.S. Geological Survey (USGS) has been involved in geological mapping of the sea floor for the past thirty years. Early geophysical and acoustic mapping efforts using GLORIA (Geologic LOng Range Inclined ASDIC) a long-range sidescan-sonar system, provided broad-scale imagery of deep waters within the U.S. Exclusive Economic Zone (EEZ). In the early 1990's, research emphasis shifted from deep- to shallow-water environments to address pertinent coastal research and resource management issues. Use of shallow-water, high-resolution geophysical systems has enhanced our understanding of the processes shaping shallow marine environments. However, research within these shallow-water environments continues to present technological challenges.

Conference Paper↗

Beating effect identified from seismic responses of instrumented buildings

Beating effects observed in the recorded responses of buildings are examined in this paper. Beating is a periodic, resonating and prolonged vibrational behavior caused by distinctive close coupling of translational and torsional modes of a lightly damped structure. Repetitively stored potential energy during the coupled translational and torsional deformations turns into repetitive vibrational energy causing the ensuing prolonged motions. Beating, if a dominant response characteristic, may impact the instantaneous and long-term shaking performances of the buildings during earthquakes. In many cases, it is noted that resonance caused by site effects also contributes to accentuating the beating effect. Records from the buildings exhibit structural responses with beating effects. Spectral analyses and system identification techniques are used to quantify dynamic characteristics used in computing beating periods. The beat frequency generally known in acoustical physics is denoted by the absolute value of the differences in frequencies that cause the phenomenon. Engineering implications of the beating may be summarized as (a) prolonged cyclic shaking due to beating effect may take its toll on the structural system, (b) repetitive shaking can accentuate fatigue and low-cycle fatigue, and (c) resonating beating cycles can and do cause discomfort to occupants. Identification of beating effects is the key to find remedial action in modification of dynamic characteristics in order to attenuate or eliminate such effects.

Conference Paper↗

In-stream laser diffraction for measuring suspended sediment concentration and particle size distribution in rivers: Insights from field campaigns

This study evaluates the laser in situ scattering and transmissometry (LISST) instrument LISST-SL2, a laser diffraction instrument for suspended sediment sampling in rivers, with concurrent physical measurements of suspended sediment concentration (SSC) and particle size distribution (PSD) as well as velocity measurements by an acoustic Doppler current profiler (ADCP). We collected 136 LISST-SL2 samples along with 61 physical samples for SSC measurement, of which 24 physical samples included PSD measurement during 2018–2020 from 11 sites in Washington state and Virginia. An effective density is required to convert the measured volumetric SSC by the LISST-SL2 into a reported mass SSC, and by default the LISST-SL2 assumes a value of 2.65 g / mL . From our data set, we computed effective densities (mass SSC/volumetric SSC) that ranged from 0.5 to 5.4 g / mL , with a best-fit value of 2.05 g / mL . Additionally, the LISST-SL2 was not able to measure the finest sediment sizes in suspension, which affects the resulting PSD. Therefore, we propose some adjustments of the LISST-SL2 data with a supporting physical sample to account for these effective density and PSD issues. When doing so, we were able to reduce the root-mean square relative error (RMSRE) to 18% from 117% for SSC, and to 26% from 78% for PSD. LISST-SL2 velocities were generally higher than ADCP velocities with a 21% RMSRE. Our results and guidance will allow for more accurate sampling by the LISST-SL2, which has potential for studying spatial and temporal variation of suspended sediment characteristics in rivers.

Virginia, Washington↗

Evaluation of a floating fish guidance structure at a hydrodynamically complex river junction in the Sacramento-San Joaquin River Delta, California, USA

Survival of out-migrating juvenile Chinook salmon ( Oncorhynchus tshawytscha ) in the Sacramento–San Joaquin River delta, California, USA, varies by migration route. Survival of salmonids that enter the interior and southern Delta can be as low as half that of salmonids that remain in the main-stem Sacramento River. Reducing entrainment into the higher-mortality routes, such as Georgiana Slough, should increase overall survival. In spring 2014, a floating fish-guidance structure (FFGS) designed to reduce entrainment into Georgiana Slough was deployed just upstream of the Georgiana Slough divergence. We used acoustic telemetry to evaluate the effect of the FFGS on Chinook entrainment to Georgiana Slough. At intermediate discharge (200–400 m 3 s –1 ), entrainment into Georgiana Slough was five percentage points lower when the FFGS was in the on state (19.1% on; 23.9% off). At higher discharge (>400 m 3 s –1 ), entrainment was higher when the FFGS was in the on state (19.3% on; 9.7% off), and at lower discharge (0–200 m 3 s –1 ) entrainment was lower when the FFGS was in the on state (43.7% on; 47.3% off). We found that discharge, cross-stream fish position, time of day, and proportion of flow remaining in the Sacramento River contributed to the probability of being entrained to Georgiana Slough.

California↗

Expanding freshwater biologger studies to view fish as environmental sensing platforms

While recording fish habitat use by electronic sensors, biologgers can also be viewed as autonomous environmental monitoring systems with the organism as a vehicle. This dual perspective has provided novel results from marine ecosystems, but has not been applied to freshwater ecosystems. To understand limitations in fresh water, we evaluated miniature depth and temperature recorders as aquatic monitoring systems in a Laurentian Great Lake: Erie. As part of an acoustic telemetry study, biologgers were opportunistically implanted in a subsample of walleye Sander vitreus . Biologgers recorded temperature and depth at half-hour intervals for up to 1 year. Recaptures provided six biologgers for analysis of seasonal temperature patterns and lake stratification, key variables for understanding dimictic lakes. Depth-resolved temperature patterns showed close correspondence with independent weather buoy measurements. Because the buoy was deployed late in the season, biologger data provided improved estimates of the start of stratification, which had important implications for understanding development of hypoxia in the hypolimnion. Drawbacks to biologger data included imprecise knowledge of fish location and reliance on tag recoveries from the fishery. Optimistically, our results show how biologgers could be part of a monitoring approach that integrates limnological surveys with fisheries science.

Marine and Freshwater Research↗

Survival of migrating Atlantic salmon smolts through the Penobscot River, Maine: A pre-restoration assessment

Survival, distribution, and behavior of hatchery ( n = 493) and naturally reared ( n = 133) smolts of Atlantic salmon Salmo salar migrating through the Penobscot River and estuary in Maine were evaluated with acoustic telemetry in 2005 and 2006. Survival and use of a secondary migration path (the Stillwater Branch) were estimated with a multistate mark–recapture model. Higher rates of mortality per kilometer (range = 0.01–0.22) were observed near release sites and within reaches that contained three particular dams: Howland, West Enfield, and Milford dams. Estimated total survival of tagged hatchery smolts through entire individual reaches containing those dams ranged from 0.52 ( 0.18) to 0.94 ( 0.09), whereas survival through most of the reaches without dams exceeded 0.95. Of those smolts that survived to the Penobscot River–Stillwater Branch split at Marsh Island, most (≥74%) remained in the main stem around Marsh Island, where they experienced lower survival than fish that used the Stillwater Branch. Movement rates of hatchery-reared smolts were significantly lower through reaches containing dams than through reaches that lacked dams. Smolts arriving at dams during the day experienced longer delays than smolts arriving at night. Planned removal of two dams in this system is expected to enhance the passage of smolts through the main-stem corridor. However, the dams currently scheduled for removal (Great Works and Veazie dams) had less influence on smolt survival than some of the dams that will remain. This case study shows that by examining prerestoration migration dynamics throughout entire river systems rather than just in the vicinity of particular dams, tracking studies can help prioritize restoration efforts or predict the costs and benefits of future hydrosystem changes.

Maine↗

Influence of sex and reproductive status on seasonal movement of Lake Sturgeon in Namakan Reservoir, Minnesota–Ontario

We evaluated the influence of sex and reproductive condition on seasonal distribution and movement patterns of Lake Sturgeon Acipenser fulvescens in Namakan Reservoir, Minnesota–Ontario. Blood samples were collected from 133 Lake Sturgeon prior to spawning and plasma concentrations of testosterone and estradiol-17ß were analyzed using radioimmunoassay. Steroid concentrations were used to determine sex and the reproductive stage of each sturgeon. A subset of 60 adults were implanted with acoustic transmitters prior to spawning in 2007 and 2008. Movement was monitored using an array of 15 stationary receivers covering U.S. and Canadian waters of Namakan Reservoir and its tributaries. Of the monitored sturgeon, there was no significant difference in the minimum distance traveled between sexes or among seasons. Site residency did not differ between sexes but differed significantly among seasons, and Lake Sturgeon of both sexes had higher residency during winter (mean = 24 d). Five females implanted with transmitters were characterized as presumed reproductive and 14 as nonreproductive based on plasma steroid concentrations. In general, movement patterns (i.e., migration) of presumed reproductive females corresponded positively with availability of spawning habitat in tributaries. Moreover, presumed reproductive females traveled greater distances than nonreproductive females, particularly during prespawn, spawning, and fall time periods. Distance traveled by presumed reproductive females was highest in the fall compared with other seasons and may be linked to increased energy requirements during late oogenesis before spawning in spring. Combining movement data with information on Lake Sturgeon reproductive status and habitat suitability provided a robust approach for understanding their seasonal migration patterns and identifying spawning locations.

Minnesota, Ontario↗

Telemetry-based mortality estimates of juvenile spot in two North Carolina estuarine creeks

We estimated natural mortality rates ( M ) of age-1 Spot Leiostomus xanthurus by using a sonic telemetry approach. Sonic transmitters were surgically implanted into a total of 123 age-1 Spot in two North Carolina estuarine creeks during spring 2009 and 2010, and the fish were monitored by using a stationary acoustic receiver array and manual tracking. Fates of telemetered Spot were inferred based on telemetry information from estimated locations and swimming speeds. Potential competitors of age-1 Spot were assessed through simultaneous otter trawl sampling, while potential predators of Spot were collected using gill nets and trammel nets. The number of inferred natural mortalities was zero in 2009 (based on 29 telemetered Spot at risk) and four in 2010 (based on 52 fish at risk), with fish being at risk for up to about 70 d each year. Catches of potential competitors or predators did not differ between years, and age-1 Spot were not found in analyzed stomach contents of potential predators. Our estimated 30-d M of 0.03 (95% credible interval = 0.01–0.07) was lower than that predicted from weight-based ( M = 0.07) and life-history-based ( M = 0.06–0.36) estimates. Our field-based estimate of M for age-1 Spot in this estuarine system can assist in the assessment and management of Spot by allowing a direct comparison with M -values predicted from fish size or life history characteristics. The field telemetry and statistical analysis techniques developed here provide guidance for future telemetry studies of relatively small fish in open, dynamic habitat systems, as they highlight strengths and weaknesses of using a telemetry approach to estimate M .

North Carolina↗

Habitat use and selection by adult pallid sturgeon in the lower Mississippi River

The Pallid Sturgeon Scaphirhynchus albus is an endangered riverine sturgeon with historical distribution restricted to the Yellowstone, Missouri, Mississippi, and Atchafalaya rivers. Although not abundant, Pallid Sturgeon in the lower Mississippi River appear to be naturally recruiting, and information about habitat use is important to conserve this species. Thirty-four adult Pallid Sturgeon (612-1,013-mm FL) were tagged with acoustic transmitters and relocated a total of 272times in a 40-km reach of the lower Mississippi River from April 2009 through December 2012. Pallid Sturgeon strongly selected island tip and natural bank habitats, and, to a lesser degree, revetted bank habitat. Although frequently used, Pallid Sturgeon exhibited negative selection for the expansive main channel habitat. Secondary channel habitat was seasonally available and excluded from habitat selection analysis, but this habitat was frequently used in the spring when available. Fifty percent of Pallid Sturgeon detections were in relatively narrow ranges of depths (6.2-13.6m) and surface current velocities (0.64-1.05m/s). Use of different habitats was related to river stage and water temperature, suggesting use of some habitats was seasonal. Results suggest that maintaining natural bank habitat and secondary channel-island complexes will benefit conservation of this endangered species in the lower Mississippi River.

Arkansas↗

Fall spawning of Atlantic sturgeon in the Roanoke River, North Carolina

In 2012, the National Oceanic and Atmospheric Administration (NOAA) declared Atlantic Sturgeon Acipenser oxyrinchus oxyrinchus to be threatened or endangered throughout its range in U.S. waters. Restoration of the subspecies will require much new information, particularly on the location and timing of spawning. We used a combination of acoustic telemetry and sampling with anchored artificial substrates (spawning pads) to detect fall (September–November) spawning in the Roanoke River in North Carolina. This population is included in the Carolina Distinct Population Segment, which was classified by NOAA as endangered. Sampling was done immediately below the first shoals encountered by anadromous fishes, near Weldon. Our collection of 38 eggs during the 21 d that spawning pads were deployed appears to be the first such collection (spring or fall) for wild-spawned Atlantic Sturgeon eggs. Based on egg development stages, estimated spawning dates were September 17–18 and 18–19 at water temperatures from 25.3°C to 24.3°C and river discharge from 55 to 297 m 3 /s. These observations about fall spawning and habitat use should aid in protecting critical habitats and planning research on Atlantic Sturgeon spawning in other rivers.

North Carolina↗

Shortnose sturgeon in the Gulf of Maine: Use of spawning habitat in the Kennebec System and response to dam removal

Evidence has become available in this century indicating that populations of the endangered Shortnose Sturgeon Acipenser brevirostrum migrate outside their natal river systems, but the full extent and functional basis of these migrations are not well understood. Between 2007 and 2013, 40 Shortnose Sturgeon captured and tagged in four Gulf of Maine river systems migrated long distances in coastal waters to reach the Kennebec System where their movements were logged by an acoustic receiver array. Twenty-one (20%) of 104 Shortnose Sturgeon tagged in the Penobscot River, two (50%) of four tagged in the Kennebec System, one (50%) of two tagged in the Saco River, and 16 (37%) of 43 tagged in the Merrimack River moved to a previously identified spawning site or historical spawning habitat in the Kennebec System in spring. Most (65%) moved in early spring from the tagging location directly to a spawning site in the Kennebec System, whereas the rest moved primarily in the fall from the tagging location to a wintering site in that system and moved to a spawning site the following spring. Spawning was inferred from the location, behavior, and sexual status of the fish and from season, water temperature, and discharge, and was confirmed by the capture of larvae in some years. Tagged fish went to a known spawning area in the upper Kennebec Estuary (16 events) or the Androscoggin Estuary (14 events), an historical spawning habitat in the restored Kennebec River (8 events), or two spawning areas in a single year (7 events). We have provided the first evidence indicating that Shortnose Sturgeon spawn in the restored Kennebec River in an historical habitat that became accessible in 1999 when Edwards Dam was removed, 162 years after it was constructed. These results highlight the importance of the Kennebec System to Shortnose Sturgeon throughout the Gulf of Maine.

Maine↗

Carbon dioxide as a tool to deter the movement of invasive bigheaded carps

Nonnative bigheaded carps are established in the Mississippi River and there is substantial concern about their potential entry into the interconnected Laurentian Great Lakes. While electrical barriers currently exist as a preventative measure, there is need for additional control mechanisms to promote barrier security through redundancy. We tested the effectiveness of infused carbon dioxide gas (CO 2 ) as a tool to influence the movement and behavior invasive bigheaded carps, namely Bighead Carp Hypophthalmichthys nobilis and Silver Carp H. molitrix , as well as native Bigmouth Buffalo Ictiobus cyprinellus , Channel Catfish Ictalurus punctatus , Paddlefish Polyodon spathula , and Yellow Perch Perca flavescens in an experimental pond. Individuals were monitored with acoustic telemetry before, during, and after CO 2 addition to the pond. We noted distinct changes in fish behavior following CO 2 addition. Each species except Paddlefish maintained farther distances from the CO 2 infusion manifold relative to controls. Both bigheaded carp species had slower persistence velocities (persistence of a movement in a given direction) following CO 2 infusion and Bighead Carp used a smaller area of the pond immediately after CO 2 addition. Pond pH progressively decreased up to 1.5 units following CO 2 infusion. This work provides evidence that could inform future research to enhance existing control measures used to deter high-risk invasive fishes, such as bigheaded carps.

Transactions of the American Fisheries Society↗

Field calibration and validation of remote-sensing surveys

The Optical Collection Suite (OCS) is a ground-truth sampling system designed to perform in situ measurements that help calibrate and validate optical remote-sensing and swath-sonar surveys for mapping and monitoring coastal ecosystems and ocean planning. The OCS system enables researchers to collect underwater imagery with real-time feedback, measure the spectral response, and quantify the water clarity with simple and relatively inexpensive instruments that can be hand-deployed from a small vessel. This article reviews the design and performance of the system, based on operational and logistical considerations, as well as the data requirements to support a number of coastal science and management projects. The OCS system has been operational since 2009 and has been used in several ground-truth missions that overlapped with airborne lidar bathymetry (ALB), hyperspectral imagery (HSI), and swath-sonar bathymetric surveys in the Gulf of Maine, southwest Alaska, and the US Virgin Islands (USVI). Research projects that have used the system include a comparison of backscatter intensity derived from acoustic (multibeam/interferometric sonars) versus active optical (ALB) sensors, ALB bottom detection, and seafloor characterization using HSI and ALB.

Alaska↗