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At least 991 records · Page 55Linked to original sources

Geomorphic analysis of the river response to sedimentation downstream of Mount Rainier, Washington

A study of the geomorphology of rivers draining Mount Rainier, Washington, was completed to identify sources of sediment to the river network; to identify important processes in the sediment delivery system; to assess current sediment loads in rivers draining Mount Rainier; to evaluate if there were trends in streamflow or sediment load since the early 20th century; and to assess how rates of sedimentation might continue into the future using published climate-change scenarios. Rivers draining Mount Rainier carry heavy sediment loads sourced primarily from the volcano that cause acute aggradation in deposition reaches as far away as the Puget Lowland. Calculated yields ranged from 2,000 tonnes per square kilometer per year [(tonnes/km 2 )/yr] on the upper Nisqually River to 350 (tonnes/km 2 )/yr on the lower Puyallup River, notably larger than sediment yields of 50–200 (tonnes/km2)/yr typical for other Cascade Range rivers. These rivers can be assumed to be in a general state of sediment surplus. As a result, future aggradation rates will be largely influenced by the underlying hydrology carrying sediment downstream. The active-channel width of rivers directly draining Mount Rainier in 2009, used as a proxy for sediment released from Mount Rainier, changed little between 1965 and 1994 reflecting a climatic period that was relatively quiet hydrogeomorphically. From 1994 to 2009, a marked increase in geomorphic disturbance caused the active channels in many river reaches to widen. Comparing active-channel widths of glacier-draining rivers in 2009 to the distance of glacier retreat between 1913 and 1994 showed no correlation, suggesting that geomorphic disturbance in river reaches directly downstream of glaciers is not strongly governed by the degree of glacial retreat. In contrast, there was a correlation between active-channel width and the percentage of superglacier debris mantling the glacier, as measured in 1971. A conceptual model of sediment delivery processes from the mountain indicates that rockfalls, glaciers, debris flows, and main-stem flooding act sequentially to deliver sediment from Mount Rainier to river reaches in the Puget Lowland over decadal time scales. Greater-than-normal runoff was associated with cool phases of the Pacific Decadal Oscillation. Streamflow-gaging station data from four unregulated rivers directly draining Mount Rainier indicated no statistically significant trends of increasing peak flows over the course of the 20th century. The total sediment load of the upper Nisqually River from 1945 to 2011 was determined to be 1,200,000±180,000 tonnes/yr. The suspended-sediment load in the lower Puyallup River at Puyallup, Washington, was 860,000±300,000 tonnes/yr between 1978 and 1994, but the long-term load for the Puyallup River likely is about 1,000,000±400,000 tonnes/yr. Using a coarse-resolution bedload transport relation, the long-term average bedload was estimated to be about 30,000 tonnes/yr in the lower White River near Auburn, Washington, which was four times greater than bedload in the Puyallup River and an order of magnitude greater than bedload in the Carbon River. Analyses indicate a general increase in the sediment loads in Mount Rainier rivers in the 1990s and 2000s relative to the time period from the 1960s to 1980s. Data are insufficient, however, to determine definitively if post-1990 increases in sediment production and transport from Mount Rainier represent a statistically significant increase relative to sediment-load values typical from Mount Rainier during the entire 20th century. One-dimensional river-hydraulic and sediment-transport models simulated the entrainment, transport, attrition, and deposition of bed material. Simulations showed that bed-material loads were largest for the Nisqually River and smallest for the Carbon River. The models were used to simulate how increases in sediment supply to rivers transport through the river systems and affect lowland reaches. For each simulation, the input sediment pulse evolved through a combination of translation, dispersion, and attrition as it moved downstream. The characteristic transport times for the median sediment-size pulse to arrive downstream for the Nisqually, Carbon, Puyallup, and White Rivers were approximately 70, 300, 80, and 60 years, respectively.

Washington↗

Estimated water use and availability in the Pawtuxet and Quinebaug River basins, Rhode Island, 1995-99

Water availability became a concern in Rhode Island during a drought in 1999, and an investigation was needed to assess demands on the hydrologic system from withdrawals during periods of little to no precipitation. The low water levels during the drought prompted the U.S. Geological Survey and the Rhode Island Water Resources Board to begin a series of studies on water use and availability in each drainage area in Rhode Island for 1995–99. The study area for this report, which includes the Pawtuxet River Basin in central Rhode Island (231.6 square miles) and the Quinebaug River Basin in western Rhode Island (60.97 square miles), was delineated as the surface-water drainage areas of these basins. During the study period from 1995 through 1999, two major water suppliers withdrew an average of 71.86 million gallons per day (Mgal/d) from the Pawtuxet River Basin; of this amount, about 35.98 Mgal/d of potable water were exported to other basins in Rhode Island. The estimated water withdrawals from minor water suppliers were 0.026 Mgal/d in the Pawtuxet River Basin and 0.003 Mgal/d in the Quinebaug River Basin. Total self-supply withdrawals were 2.173 Mgal/d in the Pawtuxet River Basin and 0.360 Mgal/d in the Quinebaug River Basin, which has no public water supply. Total water use averaged 18.07 Mgal/d in the Pawtuxet River Basin and 0.363 Mgal/d in the Quinebaug River Basin. Total return flow in the Pawtuxet River Basin was 30.64 Mgal/d, which included about 12.28 Mgal/d that were imported from other basins in Rhode Island. Total return flow was 0.283 Mgal/d in the Quinebaug River Basin. During times of little to no recharge in the form of precipitation, the surface- and ground-water flows are from storage primarily in the stratified sand and gravel deposits; water also flows through the till deposits, but at a slower rate. The ground water discharging to the streams during times of little to no recharge from precipitation is referred to as base flow. The PART program, a computerized hydrograph-separation application, was used to analyze the data collected at two selected index stream-gaging stations to determine water availability on the basis of the 75th, 50th, and 25th percentiles of the total base flow; the base flow for the 7-day, 10-year low-flow scenario; and the base flow for the Aquatic Base Flow scenario for both stations. The index stream-gaging stations used in the analysis were the Branch River at Forestdale, Rhode Island (period of record 1957–1999) and the Nooseneck River at Nooseneck, Rhode Island (period of record 1964–1980). A regression equation was used to estimate unknown base-flow contributions from sand and gravel deposits at the two stations. The base-flow contributions from sand and gravel deposits and till deposits at the index stations were computed for June, July, August, and September within the periods of record, and divided by the area of each type of surficial deposit at each index station. These months were selected because they define a period when there is usually an increased demand for water and little to no precipitation. The base flows at the stream-gaging station Branch River at Forestdale, Rhode Island were lowest in August at the 75th, 50th, and 25th percentiles (29.67, 21.48, and 13.30 Mgal/d, respectively). The base flows at the stream-gaging station Nooseneck River at Nooseneck, Rhode Island were lowest in September at the 75th percentile (3.551 Mgal/d) and lowest in August at the 50th and 25th percentiles (2.554 and 1.811 Mgal/d). The base flows per unit area for the index stations were multiplied by the areas of sand and gravel and till in the studyarea subbasins to determine the amount of available water for each scenario. The water availability in the Pawtuxet River Basin at the 50th percentile ranged from 126.5 Mgal/d in August to 204.7 Mgal/d in June, and the total gross water availability for the 7-day, 10-year low-flow scenario at the 50th percentile ranged from 112.2 Mgal/d in August to 190.4 Mgal/d in June. The Scituate Reservoir safe yield was 83 Mgal/d in all scenarios. Water availability in the Quinebaug River Basin ranged from 13.94 Mgal/d in August to 30.53 Mgal/d in June at the 50th percentile. The total gross water availability for the 7-day, 10-year low-flow scenario at the 50th percentile ranged from 14.26 Mgal/d in August to 42.69 Mgal/d in June. Because water withdrawals and use are greater during the summer than other times of the year, water availability in June, July, August, and September was compared to water withdrawals in the basin and subbasins. The ratios of water withdrawn to water available were calculated for the 75th, 50th, and 25th percentiles for the subbasins; the closer the ratio is to 1, the closer the withdrawals are to the estimated water available, and the less net water is available. Withdrawals in July were higher than in the other summer months in both basins. In the Pawtuxet River Basin, the ratios were close to 1 in July for the estimated gross yield (from sand and gravel and from till and from the Scituate Reservoir safe yield), 7-day, 10-year low-flow scenario, and Aquatic Base Flow scenario at the 75th percentile and in August for all three scenarios at the 50th and 25th percentiles. In the Quinebaug River Basin, the ratios were close to 1 in August for the estimated gross yield; 7-day, 10-year low-flow scenario; and Aquatic Base Flow scenario. A long-term water budget was calculated for 1941 through 1999 to identify and assess the basin and subbasin inflow and outflows for the Pawtuxet and Quinebaug River Basins. The water withdrawals and return flows used in the budget were from 1995 through 1999. Inflow was assumed to be equal to outflow; total inflows and outflows were 574.9 Mgal/d in the Pawtuxet River Basin and 148.4 Mgal/d in the Quinebaug River Basin. Precipitation and return flow were 95 and 5 percent of the estimated inflows to the Pawtuxet River Basin, respectively. Precipitation was 100 percent of the estimated inflow to the Quinebaug River Basin; return flow was less than 1 percent of the inflow. Evapotranspiration, streamflow, and water withdrawals were 46, 41, and 13 percent, respectively, of the estimated outflows in the Pawtuxet River Basin. Evapotranspiration and streamflow were 49 and 51 percent, respectively, of the estimated outflows in the Quinebaug River Basin. Water withdrawals were less than 1 percent of outflows in the Quinebaug River Basin.

Rhode Island↗

Biomonitoring of Environmental Status and Trends (BEST) Program: Environmental contaminants, health indicators, and reproductive biomarkers in fish from the Mobile, Apalachicola-Chattahoochee-Flint, Savannah, and Pee Dee River Basins

Largemouth bass ( Micropterus salmoides ) and common carp ( Cyprinus carpio ) were collected from 13 sites in 4 river basins in the southeastern United States to document spatial trends in accumulative contaminants, health indicators, and reproductive biomarkers. Organochlorine residues, 2,3,7,8- tetrachlorodibenzo-p-dioxin-like activity (TCDD-EQ), and elemental contaminants were measured in composite samples of whole fish, grouped by species and gender, from each site. Fish were field-examined for external and internal anomalies, selected organs were weighed to compute somatic indices, and tissue and fluid samples were preserved for fish health and reproductive biomarker analyses. Mercury concentrations in bass samples from all sites exceeded toxicity thresholds for mammals [>0.1 micrograms per gram wet weight (ug/g ww)], fish (>0.2 ug/g ww), and birds (>0.3 ug/g ww) and were greatest (>0.5 ug/g ww) in samples from the Alabama River at Eureka Landing, Alabama; the Mobile River at Bucks, Alabama; the Apalachicola River at Blountstown, Florida; the Savannah River at Sylvania, Georgia; and the Pee Dee River at Bucksport, South Carolina. Selenium concentrations were relatively high (>0.75 ug/g ww) in fish from the Tombigbee River at Lavaca, Alabama; the Mobile River at Bucks; and the Chattahoochee River at Omaha, Georgia compared to those from other sites. Concentrations of 2,2-bis (p-chlorophenyl)- 1,1-dichloroethylene (p,p'-DDE) were high in fish from the Chattahoochee River at Omaha and the Mobile River near Bucks, which was near a 2,2-bis (p-chlorophenyl)-1,1- dichloroethylene (DDT) formulating facility that historically discharged into the lower Mobile River. Toxaphene concentrations in fish from the Flint River near Albany, Georgia (60-100 nanograms per gram (ng/g) ww) may pose a risk to fish. Concentrations of other formerly used (total chlordanes, dieldrin, endrin, aldrin, mirex, and hexachlorobenzene) and currently used (pentachlorobenzene, pentachloroanisole, dacthal, endosulfan, y-HCH, and methoxychlor) organochlorine residues generally were low or did not exceed toxicity thresholds. Total polychlorinated biphenyls concentrations in samples from the Coosa River at Childersburg, Alabama; the Apalachicola River at Omaha; the Apalachicola River at Blountstown; and the Pee Dee River at Bucksport were >480 ng/g ww and may be a risk to piscivorous wildlife. Dioxin-like activity as measured by TCDD-EQ was greatest [>10 picograms per gram (pg/g)] in male fish from the Coosa River at Childersburg and the Mobile River at Bucks. Hepatic ethoxyresorufin O-deethylase activity generally was greatest in carp from the Mobile River Basin [means >10 picomols per minute per milligram of protein (pmol/min/mg)] and in bass from the Tombigbee River at Lavaca and Pee Dee River at Pee Dee, South Carolina (means >65 pmol/min/mg). Altered biomarkers were noted in fish from all basins. The field necropsy and histopathological examination determined that fish from the Mobile River Basin generally were in poorer health than those from the other basins. In bass, health assessment index scores were correlated with mercury and p,p'-DDE concentrations. High health assessment index scores in Mobile River Basin fish were widespread and caused primarily by parasitic infestations, which were most severe in fish from the Tombigbee River at Lavaca and the Alabama River at Eureka Landing. Tumors were present in few fish (n = 5; 0.01%). Ovarian tumors of the same origin (smooth muscle) were present in two older carp from the Chattahoochee River near Omaha, Georgia and may be contaminant related. Reproductive biomarkers including gonadosomatic index, vitellogenin concentrations, and steroid hormone concentrations were anomalous in fish from various sites but were not consistently related to any particular chemical contaminant. Intersex gonads were identified in 47 male bass (42%) representing 12 sites and may indicate exposure to endocrine disrupting comp

Mobile, Apalachicola-Chattahoochee-Flint, Savannah↗

Ecological assessment of streams in the Powder River Structural Basin, Wyoming and Montana, 2005-06

Energy and mineral development, particularly coalbed natural gas development, is proceeding at a rapid pace in the Powder River Structural Basin (PRB) in northeastern Wyoming. Concerns about the potential effects of development led to formation of an interagency working group of primarily Federal and State agencies to address these issues in the PRB in Wyoming and in Montana where similar types of resources exist but are largely undeveloped. Under the direction of the interagency working group, an ecological assessment of streams in the PRB was initiated to determine the current status (2005–06) and to establish a baseline for future monitoring. The ecological assessment components include assessment of stream habitat and riparian zones as well as assessments of macroinvertebrate, algal, and fish communities. All of the components were sampled at 47 sites in the PRB during 2005. A reduced set of components, consisting primarily of macroinvertebrate and fish community assessments, was sampled in 2006. Related ecological data, such as habitat and fish community data collected from selected sites in 2004, also are included in this report. The stream habitat assessment included measurement of channel features, substrate size and embeddedness, riparian vegetation, and reachwide characteristics. The width-to-depth ratio (bankfull width/bankfull depth) tended to be higher at sites on the main-stem Powder River than at sites on the main-stem Tongue River and at sites on tributary streams. The streambed substrate particle size was largest at sites on the main-stem Tongue River and smallest at sites on small tributary streams such as Squirrel Creek and Otter Creek. Total vegetative cover at the ground level, understory, and canopy layers ranged from less than 40 percent at a few sites to more than 90 percent at many of the sites. A bank-stability index indicated that sites in the Tongue River drainage were less at risk of bank failure than sites on the main-stem Powder River. Macroinvertebrate communities showed similarity at the river-drainage scale. Macroinvertebrate communities at sites with mountainous headwaters and snowmelt-driven hydrology, such as Clear Creek, Crazy Woman Creek, and Goose Creek, showed similarity with communities from the main-stem Tongue River. The data also indicated similarity among sites on the main-stem Powder River and among small tributaries of the Tongue River. Data analyses using macroinvertebrate observed/expected models and multimetric indices developed by the States of Wyoming and Montana indicated a tendency toward declining biological condition in the downstream direction along the Tongue River. Biological condition for the main-stem Powder River generally improved downstream, from below Salt Creek to near the Wyoming/Montana border, followed by a general decline downstream from the border to the confluence with the Yellowstone River. The biological condition generally was not significantly different between 2005 and 2006, although streamflow was less in 2006 because of drought. Algal communities showed similarity at the river-drainage scale with slight differences from the pattern observed in the macroinvertebrate communities. Although the algal communities from Clear Creek and Goose Creek were similar to those from the main-stem Tongue River, as was true of the macroinvertebrate communities, the algal communities from Crazy Woman Creek had more similarity to those of main-stem Powder River sites than to the Tongue River sites, contrary to the macroinvertebrates. Ordination of algal communities, as well as diatom metrics including salinity and dominant taxa, indicated substantial variation at two sites along the main stem of the Powder River. Fish communities of the PRB were most diverse in the Tongue River drainage. In part due to the effects of Tongue River Reservoir, 15 species of fish were found in the Tongue River drainage that were not found in the Cheyenne, Belle Fourche, or Little Powder River drainages. The number of introduced species and relative abundance of introduced species of fish were higher in the Tongue River and other drainages than at sites on the main-stem Powder River. Although non-native species were identified in the Powder River, the native fish community is largely intact. Western silvery minnow and sturgeon chub—species of special concern—were identified only at sites on the main-stem Powder River and were most common in the Montana segment of the main stem. Fish and habitat sampling on the main-stem Powder River indicated affinity of some species for certain habitats such as pools, runs, riffles, backwaters, or shoals.

Montana, Wyoming↗

Sediment transport in the lower Snake and Clearwater River Basins, Idaho and Washington, 2008–11

Sedimentation is an ongoing maintenance problem for reservoirs, limiting reservoir storage capacity and navigation. Because Lower Granite Reservoir in Washington is the most upstream of the four U.S. Army Corps of Engineers reservoirs on the lower Snake River, it receives and retains the largest amount of sediment. In 2008, in cooperation with the U.S. Army Corps of Engineers, the U.S. Geological Survey began a study to quantify sediment transport to Lower Granite Reservoir. Samples of suspended sediment and bedload were collected from streamgaging stations on the Snake River near Anatone, Washington, and the Clearwater River at Spalding, Idaho. Both streamgages were equipped with an acoustic Doppler velocity meter to evaluate the efficacy of acoustic backscatter for estimating suspended-sediment concentrations and transport. In 2009, sediment sampling was extended to 10 additional locations in tributary watersheds to help identify the dominant source areas for sediment delivery to Lower Granite Reservoir. Suspended-sediment samples were collected 9–15 times per year at each location to encompass a range of streamflow conditions and to capture significant hydrologic events such as peak snowmelt runoff and rain-on-snow. Bedload samples were collected at a subset of stations where the stream conditions were conducive for sampling, and when streamflow was sufficiently high for bedload transport. At most sampling locations, the concentration of suspended sediment varied by 3–5 orders of magnitude with concentrations directly correlated to streamflow. The largest median concentrations of suspended sediment (100 and 94 mg/L) were in samples collected from stations on the Palouse River at Hooper, Washington, and the Salmon River at White Bird, Idaho, respectively. The smallest median concentrations were in samples collected from the Selway River near Lowell, Idaho (11 mg/L), the Lochsa River near Lowell, Idaho (11 mg/L), the Clearwater River at Orofino, Idaho (13 mg/L), and the Middle Fork Clearwater River at Kooskia, Idaho (15 mg/L). The largest measured concentrations of suspended sediment (3,300 and 1,400 mg/L) during a rain-on-snow event in January 2011 were from samples collected at the Potlatch River near Spalding, Idaho, and the Palouse River at Hooper, Washington, respectively. Generally, samples collected from agricultural watersheds had a high percentage of silt and clay-sized suspended sediment, whereas samples collected from forested watersheds had a high percentage of sand. During water years 2009–11, Lower Granite Reservoir received about 10 million tons of suspended sediment from the combined loads of the Snake and Clearwater Rivers. The Snake River accounted for about 2.97 million tons per year (about 89 percent) of the total suspended sediment, 1.48 million tons per year (about 90 percent) of the suspended sand, and about 1.52 million tons per year (87 percent) of the suspended silt and clay. Of the suspended sediment transported to Lower Granite Reservoir, the Salmon River accounted for about 51 percent of the total suspended sediment, about 56 percent of the suspended sand, and about 44 percent of the suspended silt and clay. About 6.2 million tons (62 percent) of the sediment contributed to Lower Granite Reservoir during 2009–11 entered during water year 2011, which was characterized by an above average winter snowpack and sustained spring runoff. A comparison of historical data collected from the Snake River near Anatone with data collected during this study indicates that concentrations of total suspended sediment and suspended sand in the Snake River were significantly smaller during water years 1972–79 than during 2008–11. Most of the increased sediment content in the Snake River is attributable to an increase of sand-size material. During 1972–79, sand accounted for an average of 28 percent of the suspended-sediment load; during 2008–11, sand accounted for an average of 48 percent. Historical data from the Clearwater River at Spalding indicates that the concentrations of total suspended sediment collected during 1972–79 were not significantly different from the concentrations measured during this study. However, the suspended-sand concentrations in the Clearwater River were significantly smaller during 1972–79 than during 2008–11. The increase in suspended-sand concentrations in the Snake and Clearwater Rivers are probably attributable to numerous severe forest fires that burned large areas of central Idaho from 1980–2010. Acoustic backscatter from an acoustic Doppler velocity meter proved to be an effective method of estimating suspended-sediment concentration and load for most streamflow conditions in the Snake and Clearwater Rivers. Models based on acoustic backscatter were able to simulate most of the variability in suspended-sediment concentrations in the Clearwater River at Spalding (coefficient of determination [R 2 ]=0.93) and the Snake River near Anatone (R 2 =0.92). Acoustic backscatter seems to be especially effective for estimating suspended-sediment concentration and load over short (monthly and single storm event) and long (annual) time scales when sediment load is highly variable. However, during high streamflow events acoustic surrogate tools may be unable to capture the contribution of suspended sand moving near the bottom of the water column and thus, underestimate the total load of suspended sediment. At the stations where bedload was collected, the particle-size distribution at low streamflows typically was unimodal with sand comprising the dominant particle size. At higher streamflows and during peak bedload discharge, the particle size typically was bimodal and was comprised primarily of sand and coarse gravel. About 55,000 tons of bedload was discharged from the Snake River to Lower Granite Reservoir during water years 2009–11, about 0.62 percent of the total sediment load delivered by the Snake River. About 9,500 tons of bedload was discharged from the Clearwater River to Lower Granite Reservoir during 2009–11, about 0.83 percent of the total sediment load discharged by the Clearwater River during 2009–11.

Idaho;Washington↗

A hydrogeomorphic classification of connectivity of large rivers of the Upper Midwest, United States

River connectivity is defined as the water-mediated exchange of matter, energy, and biota between different elements of the riverine landscape. Connectivity is an especially important concept in large-river corridors (channel plus floodplain ) because large rivers integrate fluxes of water, sediment, nutrients, contaminants, and other transported constituents emanating from large contributing drainage basins, and thereby contribute to the complexity of large-river ecosystems. Large rivers are also highly valued for socioeconomic goods and services, which has led to historical fragmentation, lack of connectivity, and contentiousness about best policies for managing large-river corridors. The classification is intended to serve as a template for understanding geographic variation in large rivers within the Midwest, to aid in designing scientific studies of large river ecological processes, and to match specific river-management and restoration objectives to specific river reaches. The focus of the classification is on measuring river connectivity from available hydrological and geomorphic data. We provide a multiscale assessment and classification for segments of 15 rivers that meet various criteria for largeness. All rivers are tributaries to the Mississippi River system. The 11,600 kilometers (km) that qualified as large were classified by major alterations (unimpounded, navigation pools, storage reservoir) and additionally assessed for their network continuity as a function of numbers and heights of dams. Among the 15 rivers, 55 percent of segment length was unimpounded, 30 percent was in navigation pools, and 15 percent was under storage reservoirs. Assessment of network longitudinal connectivity among river segments documented the contrast between river segments with low-head navigation dams (Upper Mississippi, Illinois, Ohio, Green, and Cumberland Rivers) and those segments with high-head dams (mostly in the Upper Missouri River). The longest unimpounded river pathways exist in the Lower Missouri River and connected tributaries where nearly 1,300 km of the Missouri River connect to an additional 1,800 km of the Middle and Lower Mississippi Rivers. At our finest scale, we present a statistically based, component classification based on 10-km segments. Cluster analysis of hydrologic variables from 66 streamflow-gaging stations yielded 5 clusters calculated from 5 ecohydrological metrics related to lateral connectivity with the floodplain. A separate cluster analysis of 5 geomorphologic variables associated with each of the 1,172 river segments also yielded 5 clusters. When the hydrologic variables were associated with corresponding segments, the cluster analysis yielded 8 hydrogeomorphic clusters that could be explained in terms of their contribution to floodplain connectivity. Although the clusters overlap considerably in principal component space, the resulting hydrogeomorphic classification leads to a physically reasonable distribution of classes. The resulting classification is intended to increase geographic awareness of the range of variation of connectivity potential among large rivers of the Upper Midwest, to increase understanding of the extent of alteration of these rivers, and potentially to serve as a template for stratifying study designs of large-river corridor ecological processes.

Colorado, Illinois, Indiana, Iowa, Kansas, Kentuck↗

Simulation of groundwater flow and brine discharge to the Dolores River in the Paradox Valley, Montrose County, Colorado

Salinity, or total dissolved solids (TDS), of the Colorado River affects agricultural, municipal, and industrial water users and is an important concern in the Western United States. In the Paradox Valley of southwestern Colorado, natural discharge of sodium-chloride brine to the Dolores River from the underlying core of a salt-valley anticline accounts for about 6 percent of the salinity load to the Colorado River. Formation of the Paradox Valley began during the Miocene, and subsequent erosion exposed the Pennsylvania Paradox Formation in the core of the anticline where a cap rock, collapse features, breccia, and sodium-chloride saturated brine developed at the top of the exposed salt diapir. The discharge of brine to the Dolores River is affected by these dissolution features, along with seasonal hydrologic conditions and density-dependent flow between older dense brine and the younger fresh groundwater in the overlying alluvial aquifer. To reduce TDS concentrations in the Dolores River through the Paradox Valley, the Bureau of Reclamation has pumped brine from a series of shallow wells adjacent to the river since July 1996. The pumped brine is collected and piped to a deep disposal well where it is injected into the Mississippian Leadville Limestone at a depth of about 4,570-meters below land surface. The pumping and injection operation is collectively known as the Paradox Valley Unit (PVU), and by 2015, the PVU had substantially reduced TDS concentrations in the Dolores River by about 70 percent. Since 2019, injection-pressure limits and related seismic activity have constrained deep-well injection and thus brine pumping at the PVU. In cooperation with the Bureau of Reclamation, the U.S. Geological Survey developed a MODFLOW-6 three-dimensional, variable-density groundwater flow and TDS transport model of the Paradox Valley to evaluate the effects of PVU pumping operations on brine discharge to the Dolores River and to guide additional research. The finite-difference model grid consists of 76 rows and 48 columns oriented from northwest to southeast in alignment with valley topography and groundwater-flow directions in the near-surface freshwater alluvial aquifer. A 7-layer hydrogeologic framework was developed from existing datasets to represent the alluvial aquifer, cap rock, collapse breccia, and groundwater flow and TDS transport from the underlying Paradox Formation salt to the Dolores River. The model represents a 33-year transient calibration period from 1987 through 2020 that includes pre-PVU conditions from 1987 through June 1996 and post-PVU conditions from July 1996 through 2020. A 1,000-year simulation of groundwater flow and coupled TDS transport computed the initial conditions for the subsequent 33-year transient simulation. Observations of precipitation, streamflow, evaporation, agricultural land use, and PVU brine pumping rates were used to specify appropriate boundary conditions to the model representing time-varying recharge, tributary streamflow, groundwater underflow, evapotranspiration (ET), and PVU pumping. Values for average monthly streamflow and TDS concentration at the upstream streamgage, the Dolores River at Bedrock (USGS streamgage 09169500), were specified as model input where the Dolores River enters Paradox Valley. Observed pumping from the PVU, water levels and TDS concentrations in groundwater, and streamflow and estimated TDS concentrations at the downstream streamgage, the Dolores River near Bedrock (USGS streamgage 09171100), were calibration targets that constrained the manual calibration of model parameters representing aquifer hydraulic conductivity, storage, streambed conductance, recharge, and (ET). Two primary model-calibration targets were the match between observed and simulated TDS mass flux from PVU pumping wells and the match between estimated and simulated TDS mass flux to the Dolores River. The simulated TDS mass withdrawn by pumping wells is calculated by the model as the product of the assigned pumping rate and simulated groundwater TDS concentrations. Because actual pumping rates were assigned as simulated values, the total simulated PVU pumping for the 33-year calibration is within 0.5 percent of the observed values. However, simulated concentrations and thus mass flux of TDS withdrawn by the PVU pumping wells were consistently about 26 percent less than observed values for all the simulated time periods (33-year simulation, pre-PVU, and post-PVU). The representation of brine inflow was explored through additional modeling to evaluate the effect of the simulated brine source on groundwater TDS concentrations. Results indicated that a saturated-salt constant-flux brine source best replicated the magnitude and transient pattern observed for TDS mass flux from PVU pumping wells. The simulated TDS mass flux to the Dolores River is compared to estimates based on observed streamflow and specific conductance (SC) data for the downstream streamgage. The calibrated model provided a close fit of simulated to measured streamflow at the downstream streamgage, and the calibrated model fit to estimated TDS concentrations at the downstream streamgage was reasonable. The greatest differences between simulated and estimated values occurred during drought periods from June 2000 to March 2003, May 2012 to June 2013, and October 2013 to October 2014, when simulated TDS concentrations in the river were greater than estimated concentrations. In general, simulated TDS mass flux to the river for the pre-PVU period is in good agreement with estimated values (2-percent difference), but the model overestimated TDS mass flux to the river by about 41 percent during the post-PVU period. The model uncertainty with respect to TDS mass flux to the river indicates other processes or model parameters not well represented by the model are affecting the system, especially during drought. During model calibration, the most sensitive parameters were identified as vertical hydraulic conductivity of the alluvial aquifer, conductance of the Dolores River streambed, ET extinction depth and rate, and recharge rate. Five 5-year scenarios of conditions for 2021–25 were simulated to assist evaluation of alternative strategies to manage the discharge of brine into the Dolores River. The first scenario simulates no PVU pumping and serves as a base case for comparison to the other scenarios. Two scenarios simulate the effects of varying withdrawal timing at an annual rate about one-third less than during 2010 through 2018. During high-flow spring snowmelt runoff periods when brine discharge is naturally minimized, PVU pumping does not substantially affect salinity in the Dolores River, and comparison of these two scenarios indicates that scheduling brine withdrawals during times of low river stage is nearly as effective at reducing TDS mass flux to the river as pumping brine year-round. Cessation of pumping during periods of high river stage may be advantageous for system maintenance, brine injection, and seismic-risk reduction. The fourth scenario tested the effect of reducing irrigation-return flow on brine discharge and predicted a slight reduction of TDS mass flux to the Dolores River, but not as great a reduction as that of using the PVU to remove brine. The fifth scenario simulated 5 years of drought conditions without PVU pumping and indicates brine discharge during drought about 15 percent greater than during average hydrologic conditions. Results from scenario 5 are consistent with the calibrated model results and indicate that aquifer properties and ET processes and parameters may be affecting simulation results during drought. The Paradox Valley groundwater model provides a reasonable overall match to observed conditions in the Dolores River. The model is useful for evaluating relative differences between brine management scenarios to inform PVU operational decisions and to identify gaps in data and process understanding. Representation of the brine source, hydraulic-conductivity parameters, and recharge and ET processes were identified as potential areas for additional field and modeling research. Additional research in the Paradox Valley might include field-data collection that provides additional information on the hydrogeologic framework, groundwater levels, groundwater TDS concentrations, stream characteristics, and aquifer properties. Additional modeling efforts could benefit from applying advanced tools for model development, calibration, and visualization including parameter-estimation and sensitivity analysis. Statistical evaluation of known model uncertainties such as hydraulic conductivity, streambed conductance, representations of the brine source, recharge, and ET could improve the match between simulated and estimated TDS mass flux from PVU pumping wells and to the Dolores River further informing model predictions and system understanding for the Paradox Valley.

Colorado↗

Water quality of the lower Columbia River Basin: Analysis of current and historical water-quality data through 1994

The lower Columbia River Basin includes the river basins draining into the Columbia River below Bonneville Dam&mdash;the largest of which is the Willamette River. This report presents the results of a study by the U.S. Geological Survey, done in cooperation with the Lower Columbia River Bi-State Water- Quality Program, to describe the water-quality conditions in the lower Columbia River Basin by interpreting historical data collected and data collected in 1994. Historical water-quality data spanning more than 50 years and comprising more than 200 parameters were collated for interpretation in this report. The U.S. Geological Survey, the Oregon Department of Environmental Quality, and the Washington Department of Ecology collected water-quality data at 10 sites in the lower Columbia River Basin from January to December of 1994. Water-quality constituents measured in 1994 were screened against U.S. Environmental Protection Agency (EPA) and State guidelines. Arsenic, a human carcinogen, was detected in 15 of 16 samples in the lower Columbia River, but was not detected in any of the sampled tributaries. All 15 arsenic detections had concentrations that exceeded both the EPA ambient water-quality criteria for the protection of human health and the EPA human-health advisories for drinking water. Chromium was detected at all four Columbia River sites&mdash;most frequently in the Columbia River at Hayden Island. None of the chromium concentrations detected, however, exceeded water-quality criteria or guidelines. Measurements of suspended trace-element concentrations (trace-element concentrations associated with the suspended-sediment fraction) showed that the suspended form is the dominant transport phase for aluminum, iron, and manganese, whereas the dissolved form is the dominant transport phase for arsenic, barium, chromium, and copper. On the basis of tributary loads during summer low-flow months, sources of suspended silver, nickel, aluminum, and antimony exist in the lower Columbia River Basin, whereas the sources of suspended zinc and arsenic exist outside of the lower basin. Twenty organic compounds were detected of the 47 compounds analyzed for this study. None of the organic compounds measured exceeded EPA&rsquo;s ambient water-quality criteria or drinking-water guidelines. The Willamette River at Portland had the largest number of detections, and all 20 compounds were detected at one time or another at that site. The largest concentrations of the agricultural pesticides, atrazine, metolachlor, and simazine were detected in the Willamette River, where they were detected in 93, 86, 93 percent, respectively, of the samples collected. The highest concentrations of atrazine in the Willamette River were associated with the spring application and fall runoff periods. Both historical and current data showed that the highest water temperatures in the lower Columbia River Basin are present during August. For water years 1977&ndash;81 in the Columbia River at Bradwood (river mile 38.9), 75 percent of the daily mean water temperatures during August exceeded 20 degrees Celsius, a &ldquo;special condition&rdquo; criterion for the State of Washington. The special condition criterion was exceeded at four sites on the lower Columbia River during July and August, 1994&mdash;a period coinciding with season-high air temperatures and low streamflow. Trend tests using data from 1974 to 1994 showed significant (r < 0.05) upward trends for water temperature at the Columbia River at Warrendale and the Willamette River at Portland. Concentrations of dissolved oxygen and total dissolved gas were above saturation levels during high stormflows in the lower Columbia River and the Willamette River during 1994. The high concentrations of total dissolved gas in the Columbia River exceeded Oregon and Washington State standards of 110 percent of saturation and were caused by spilling water at the Columbia River dams. Aquatic life in the lower Columbia River Basin was not subjected to low dissolved-oxygen concentrations. Comparison of dissolved-oxygen concentrations in the Willamette River from 1949&ndash;58 to 1972&ndash;94 showed a significant increase in dissolved-oxygen concentrations during the low-streamflow months of summer. Trend tests showed significant (r < 0.05) downward trends from 1973 to 1994 for three constituents at the Columbia River at Warrendale: phosphorus in unfiltered water, total dissolved solids, and specific conductance. These trends may be a consequence of more conservative agricultural practices in the area upstream from Warrendale.

Oregon↗

Preliminary assessment of channel stability and bed-material transport in the Tillamook Bay tributaries and Nehalem River basin, northwestern Oregon

This report summarizes a preliminary study of bed-material transport, vertical and lateral channel changes, and existing datasets for the Tillamook (drainage area 156 square kilometers [km 2 ]), Trask (451 km 2 ), Wilson (500 km 2 ), Kilchis (169 km 2 ), Miami (94 km 2 ), and Nehalem (2,207 km 2 ) Rivers along the northwestern Oregon coast. This study, conducted in coopera-tion with the U.S. Army Corps of Engineers and Oregon Department of State Lands to inform permitting decisions regarding instream gravel mining, revealed that: Study areas along the six rivers can be divided into reaches based on tidal influence and topography. The fluvial (nontidal or dominated by riverine processes) reaches vary in length (2.4-9.3 kilometer [km]), gradient (0.0011-0.0075 meter of elevation change per meter of channel length [m/m]), and bed-material composition (a mixture of alluvium and intermittent bedrock outcrops to predominately alluvium). In fluvial reaches, unit bar area (square meter of bar area per meter of channel length [m 2 /m]) as mapped from 2009 photographs ranged from 7.1 m 2 /m on the Tillamook River to 27.9 m 2 /m on the Miami River. In tidal reaches, all six rivers flow over alluvial deposits, but have varying gradients (0.0001-0.0013 m/m) and lengths affected by tide (1.3-24.6 km). The Miami River has the steepest and shortest tidal reach and the Nehalem River has the flattest and longest tidal reach. Bars in the tidal reaches are generally composed of sand and mud. Unit bar area was greatest in the Tidal Nehalem Reach, where extensive mud flats flank the lower channel. Background factors such as valley and channel confinement, basin geology, channel slope, and tidal extent control the spatial variation in the accumulation and texture of bed material. Presently, the Upper Fluvial Wilson and Miami Reaches and Fluvial Nehalem Reach have the greatest abundance of gravel bars, likely owing to local bed-material sources in combination with decreasing channel gradient and valley confinement. Natural and human-caused disturbances such as mass movements, logging, fire, channel modifications for navigation and flood control, and gravel mining also have varying effects on channel condition, bed-material transport, and distribution and area of bars throughout the study areas and over time. Existing datasets include at least 16 and 18 sets of aerial and orthophotographs that were taken of the study areas in the Tillamook Bay tributary basins and Nehalem River basin, respectively, from 1939 to 2011. These photographs are available for future assessments of long-term changes in channel condition, bar area, and vegetation establishment patterns. High resolution Light Detection And Ranging (LiDAR) surveys acquired in 2007-2009 could support future quantitative analyses of channel morphology and bed-material transport in all study areas. A review of deposited and mined gravel volumes reported for instream gravel mining sites shows that bed-material deposition tends to rebuild mined bar surfaces in most years. Mean annual deposition volumes on individual bars exceeded 3,000 cubic meters (m 3 ) on Donaldson Bar on the Wilson River, Dill Bar on the Kilchis River, and Plant and Winslow Bars on the Nehalem River. Cumulative reported volumes of bed-material deposition were greatest at Donaldson and Dill Bars, totaling over 25,000 m 3 per site from 2004 to 2011. Within this period, reported cumulative mined volumes were greatest for the Donaldson, Plant, and Winslow Bars, ranging from 24,470 to 33,940 m 3 . Analysis of historical stage-streamflow data collected by the U.S. Geological Survey on the Wilson River near Tillamook (14301500) and Nehalem River near Foss (14301000) shows that these rivers have episodically aggraded and incised, mostly following high flow events, but they do not exhibit systematic, long-term trends in bed elevation. Multiple cross sections show that channels near bridge crossings in all six study areas are dynamic with many subject to incision and aggradation as well as lateral shifts in thalweg position and bank deposition and erosion. In fluvial reaches, unit bar area declined a net 5.3-83.6 percent from 1939 to 2009. The documented reduction in bar area may be attributable to several factors, including vegetation establishment and stabilization of formerly active bar surfaces, lateral channel changes and resulting alterations in sediment deposition and erosion patterns, and streamflow and/or tide differences between photographs. Other factors that may be associated with the observed reduction in bar area but not assessed in this reconnaissance level study include changes in the sediment and hydrology regimes of these rivers over the analysis period. In tidal reaches, unit bar area increased on the Tillamook and Nehalem Rivers (98.0 and 14.7 percent, respectively), but declined a net 24.2 to 83.1 percent in the other four tidal reaches. Net increases in bar area in the Tidal Tillamook and Nehalem Reaches were possibly attributable to tidal differences between the photographs as well as sediment deposition behind log booms and pile structures on the Tillamook River between 1939 and 1967. The armoring ratio (ratio of the median grain sizes of a bar's surface and subsurface layers) was 1.6 at Lower Waldron Bar on the Miami River, tentatively indicating a relative balance between transport capacity and sediment supply at this location. Armoring ratios, however, ranged from 2.4 to 5.5 at sites on the Trask, Wilson, Kilchis, and Nehalem Rivers; these coarse armor layers probably reflect limited bed-material supply at these sites. On the basis of mapping results, measured armoring ratios, and channel cross section surveys, preliminary conclusions are that the fluvial reaches on the Tillamook, Trask, Kilchis, and Nehalem Rivers are currently sediment supply-limited in terms of bed material - that is, the transport capacity of the channel generally exceeds the supply of bed material. The relation between transport capacity and sediment is more ambiguous for the fluvial reaches on the Wilson and Miami Rivers, but transport-limited conditions are likely for at least parts of these reaches. Some of these reaches have possibly evolved from sediment supply-limited to transport-limited over the last several decades in response to changing basin and climate conditions. Because of exceedingly low gradients, all the tidal reaches are transport-limited. Bed material in these reaches, however, is primarily sand and finer grain-size material and probably transported as suspended load from upstream reaches. These reaches will be most susceptible to watershed conditions affecting the supply and transport of fine sediment. Compared to basins on the southwestern Oregon coast, such as the Chetco and Rogue River basins, these six basins likely transport overall less gravel bed material. Although tentative in the absence of actual transport measurements, this conclusion is supported by the much lower area and frequency of bars and longer tidal reaches along all the northcoast rivers examined in this study. Previous studies suggest that the expansive and largely unvegetated bars visible in the 1939 photographs are primarily associated with voluminous sedimentation starting soon after the first Tillamook Burn fire in 1933. However, USGS studies of temporal bar trends in other Oregon coastal rivers unaffected by the Tillamook Burn show similar declines in bar area over approximately the same analysis period. In the Umpqua and Chetco River basins, historical declines in bar area are associated with long-term decreases in flood magnitude. Other factors may include changes in the type and volume of large wood and riparian vegetation. Further characterization of hydrology patterns in these basins and possible linkages with climate factors related to flood peaks, such as the Pacific Decadal Oscillation, could support inferences of expected future changes in vegetation establishment and channel planform and profile. More detailed investigations of bed-material transport rates and channel morphology would support assessments of lateral and vertical channel condition and longitudinal trends in bed material. Such assessments would be most practical for the fluvial study areas on the Wilson, Kilchis, Miami, and Nehalem Rivers and relevant to several ongoing management and ecological issues pertaining to sand and gravel transport. Tidal reaches may also be logical subjects for indepth analysis where studies would be more relevant to the deposition and transport of fine sediment (and associated channel and riparian conditions and processes) rather than coarse bed material.

Oregon↗

Evaluation of movement and survival of juvenile steelhead (Oncorhynchus mykiss) and coho salmon (Oncorhynchus kisutch) in the Klickitat River, Washington, 2018–2019

A 2-year telemetry study was conducted April–July in 2018 and 2019 to evaluate migration behavior and survival of juvenile steelhead ( Oncorhynchus mykiss ) and coho salmon ( O. kisutch ) in the Klickitat River, Washington. A total of 612 natural-origin steelhead, collected in a smolt trap on the Klickitat River, were tagged, released, and monitored as they outmigrated through the lower 17 kilometers (km) of the Klickitat River, and in the 52 km reach between the mouth of the Klickitat River and Bonneville Dam. The primary goal of the steelhead study was to estimate survival through the Klickitat River delta, the 2 km reach located at the confluence of the Klickitat and Columbia rivers. A total of 400 hatchery-origin coho salmon were tagged and released at the Klickitat Hatchery and monitored during migration through the lower 68 km of the Klickitat River and in the Columbia River to Bonneville Dam. The primary goals of the coho salmon study were (1) to estimate survival through the Klickitat River delta and (2) to determine residence time in the Klickitat River to assess potential for interactions with rearing natural-origin fish. Many tagged steelhead and coho salmon moved quickly downstream and left the Klickitat River shortly after release. Median elapsed time from release to Klickitat River exit ranged from 1.4 to 1.5 days for steelhead, and from 5.1 to 12.9 days for coho salmon during the two-year study. Ten percent of the tagged coho salmon in 2018 remained in the Klickitat River for 21.9–29.2 days before entering the Columbia River. In 2019, ten percent of the tagged coho salmon remained in the Klickitat River for 36.0–45.5 days before entering the Columbia River. This suggests that some hatchery fish spend considerable time in the river after hatchery release. Migration rates were consistently slow for both species in the Klickitat River delta compared to upstream reaches of the free-flowing Klickitat River and downstream reaches of the Columbia River. Similarly, reach-specific survival was highest in free-flowing reaches of the Klickitat River and lowest near the Klickitat River delta. Cumulative survival from release to sites located downstream of the Klickitat River delta were 0.78 for juvenile steelhead in both 2018 and 2019, and 0.57 and 0.61 for juvenile coho salmon in 2018 and 2019. Standardized survival estimates (survival per 100 river kilometers) were 0.243 in 2018 and 0.302 in 2019 for steelhead, and 0.100 in 2018 and 0.153 in 2019 for coho salmon. These estimates of standardized survival are low compared to similar estimates from other rivers in Washington, Oregon, Idaho, and California. This study provided new information about survival and residence time of juvenile steelhead and coho salmon in the Klickitat River. Additional studies would be helpful to understand factors affecting outmigration survival and overlap between hatchery-origin and natural-original juvenile steelhead and coho salmon in the system.

Washington↗

Geomorphology and flood-plain vegetation of the Sprague and lower Sycan Rivers, Klamath Basin, Oregon

This study provides information on channel and flood-plain processes and historical trends to guide effective restoration and monitoring strategies for the Sprague River Basin, a primary tributary (via the lower Williamson River) of Upper Klamath Lake, Oregon. The study area covered the lower, alluvial segments of the Sprague River system, including the lower parts of the Sycan River, North Fork Sprague River, South Fork Sprague River, and the entire main-stem Sprague River between the confluence of the North Fork Sprague and the South Fork Sprague Rivers and its confluence with the Williamson River at Chiloquin, Oregon. The study included mapping and stratigraphic analysis of flood-plain deposits and flanking features; evaluation of historical records, maps and photographs; mapping and analysis of flood-plain and channel characteristics (including morphologic and vegetation conditions); and a 2006 survey of depositional features left by high flows during the winter and spring of 2005&ndash;06. Analyses focused on the channel and flood plain within an area defined as the &ldquo;geomorphic flood plain,&rdquo; an area encompassing active fluvial and riparian processes. The geomorphic flood plain was subdivided into 13 valley segments of distinct fluvial environments on the basis of valley form and major tributary junctions: nine segments span the 136.1 kilometers of main-stem Sprague River, two segments for the lower Sycan River, and one segment for each part of the South Fork Sprague and North Fork Sprague Rivers within the study area. Segment characteristics range from steep and narrow canyons to low-gradient reaches with expansive flood plains. The wide flood-plain valley segments are broadly similar; most contain a sinuous, low-gradient channel that migrates slowly across the valley bottom. The narrow valley segments include the steep, boulder-and-cobble-bed reaches at downstream and upstream ends of the study area as well as other confined valley segments that have similar gradients and substrates as adjacent unconfined valley segments, but much lower sinuosities. Although the geologic setting of the expansive South Fork valley segment resulted in historical conditions of sinuous and poorly defined channels and wet meadows, flanking levees now narrowly confine the channelized South Fork Sprague River for much of its length. Stratigraphic analyses show that before the Mazama eruption of 7,700 calendar years before present, wetlands and low flood plains flanked the main rivers of the study area. The eruption, however, covered much of the northern basin with sand- and granule-size pumice clasts, transforming channels by increasing bed-material transport and promoting bar formation and channel migration, particularly for the Sycan and North Fork Sprague Rivers, and for the Sprague River downstream of the Sycan River confluence. The South Fork Sprague River, which had much less Mazama pumice deposited in its watershed, remained a wet-meadow fluvial system until historical channelization and diking. The analysis of historical maps and aerial photographs covering the geomorphic flood plain show changes in sinuosity, migration rates, and vegetation conditions since the 1800s. Most quantitative information is for the period between 1940 and 2000. The decrease in sinuosity since 1940 for nearly all the unconfined reaches resulted partly from decreased migration rates, but mostly from several cutoffs and avulsions formed between 1940 and 1975. The river shortening and steepening possibly resulted from (1) flood-plain confinement by levees, dikes, roads, and railroads leading to deeper and faster overbank flow, thereby promoting erosion of new flood-plain channels; and (2) flood-plain disturbances such as trails, ditches, and vegetation manipulation or eradication that locally concentrated overbank flow and decreased surface resistance to channel erosion. The most evident vegetation change has been the loss of short woody vegetation adjacent to the river channels: only one-half the near-channel area covered by short woody vegetation in 1940 was similarly covered in 2000. Woody vegetation removal in the 1950s and 1960s and continuing grazing and trampling by livestock probably are the main reasons for the decrease in short woody vegetation from the dense riparian corridors of willows ( Salix sp.) and other riparian shrubs noted in the early 20th century. The alluvial corridor of the South Fork Sprague River, compared to other Sprague River Basin rivers, has been the most substantially transformed since first historical observations. The present channel is incised, straightened, and separated from the rarely inundated flood plain by levees. Despite these effects of human disturbances, many of the fundamental physical processes forming the Sprague River fluvial systems over the last several thousand years still function. In particular, flows are unregulated, sediment transport processes are active, and overbank flooding allows for floodplain deposition and erosion. Therefore, restoration of many of the native physical conditions and processes is possible without substantial physical manipulation of current conditions for much of the Sprague River study area. An exception is the South Fork Sprague River, where historical trends are not likely to reverse until it attains a more natural channel and flood-plain geometry and the channel aggrades to the extent that overbank flow becomes common.

Oregon↗

Sources and characteristics of dissolved organic carbon in the McKenzie River, Oregon, related to the formation of disinfection by-products in treated drinking water

Executive Summary This study characterized the concentration and quality of dissolved organic carbon (DOC) in the McKenzie River, a relatively undeveloped watershed in western Oregon, and its link to forming disinfection by-products (DBPs) in treated drinking water. The study aimed to identify the primary source(s) of DOC in source water for the Eugene Water & Electric Board’s (EWEB) conventional treatment plant on the McKenzie River near river mile 11, upstream of Hayden Bridge. The two classes of regulated compounds examined—trihalomethanes (THMs) and haloacetic acids (HAAs)—form when organic carbon in raw source water reacts with chlorine and (or) bromine during water treatment. The objectives of the study were to: characterize the amount and quality of DOC in the McKenzie River and select tributaries during storms; identify the most common types of carbon using UV-vis spectroscopy and other methods; evaluate optical properties for predicting DBP precursors in surface water; and identify land cover classes or vegetation types that may be important sources of organic carbon and DBP precursors in EWEB’s source water. Eleven storms were sampled synoptically in upstream-to-downstream fashion to provide a “snapshot” of water quality conditions at four sites on the McKenzie River from Frissell Bridge (6 miles downstream from Trail Bridge Reservoir) to the EWEB water treatment plant at Hayden Bridge and nine contributing tributaries. Storms included late summer and early autumn “first flush” events and late autumn, winter, and spring storms spanning a range in streamflows from 3,000 to 26,000 cubic feet per second as measured in the main stem McKenzie River at the EWEB water intake. Water samples were analyzed for DOC concentrations and optical properties (fluorescence and ultraviolet absorbance [UVA]) across a range of wavelengths to characterize the quantity and quality of dissolved organic matter (DOM) in the McKenzie River at the drinking water intake and upstream locations. Paired sets of source and finished water samples were collected at the EWEB treatment plant to identify DOC quality parameters in raw source water that might predict DBP concentrations in finished drinking water. DOC concentrations were relatively low in the McKenzie River (0.4–3 milligrams per liter [mg/L]; average 1.5 mg/L) but much higher in the tributaries. The highest DOC concentrations occurred during “first flush” storms in October 2012 and September 2013; the highest value (16 mg/L) was measured at the 52nd Street stormwater outfall. The average DOC concentration in the lower basin-tributaries was 3.8 mg/L; three middle basin tributaries—Quartz, Gate, and Haagen Creeks, which drain private forestland with less coniferous forest compared with other higher elevation tributaries— had slightly lower average DOC concentrations (2.8 mg/L). These middle-basin watersheds may be important sources of DOC and DBP precursors to the McKenzie River, even more so than the lower basin tributaries, depending on their flows (and loads). This is particularly true after the September 2020 Holiday Farm fire, which burned much of this area. DOC concentrations increased 68 percent in the McKenzie River between the uppermost reference site at Frissell Bridge and Vida; this includes drainage from Quartz Creek, Blue River Lake and Cougar Reservoir, which all contributed DOC to the main stem. In contrast, the lowermost tributaries draining most of the agricultural and urban land did not have a large effect on DOC in the McKenzie River despite their higher DOC concentrations because of their presumed relatively low streamflows and, consequently, DOC loads. Apart from the continuous flow monitors in the McKenzie River and some tributaries (Blue River and South Fork McKenzie River, and streamflow at Hayden Bridge and Vida, Camp Creek and some other locations), streamflow was not assessed during sample collection for this study. This lack of streamflow data precludes a detailed analysis of loads, which is discussed in the future studies section. All DBP concentrations in finished drinking water were less than EPA maximum contaminant levels (MCLs) of 0.080 mg/L for the four trihalomethanes (THM4) and 0.060 mg/L for five haloacetic acids (HAA5). During the 11 storm sampling events the maximum summed concentrations were about 0.040 mg/L for both THM4 and HAA5. Compliance monitoring samples, collected separately by EWEB, yielded some higher concentrations—0.046 mg/L THM4 and 0.047 HAA5—during the December 2012 storm. The corresponding benchmark quotient (BQ) values, which indicate how close a measured DBP concentration is to the MCL, were 0.58 and 0.78, respectively, for THM4 and HAA5. Compared with a similar 2007–08 McKenzie River study that did not target storm events, concentrations of THM4 and HAA5 in finished water were 68 percent and 33 percent higher, respectively, during the current study. Due to the high dilution rates in the McKenzie River main stem, many of the individual fluorescence excitation-emission measurements were low (<0.1 Raman units) and approached analytical detection limits. Parallel factor analysis (PARAFAC) resulted in a five-component model (C1–C5) that represents five unique organic fluorophores. Components C1, C2, and C3 represent DOM associated with soil-derived, humic-like, more degraded organic matter. In contrast, components C4 and C5 represent “fresher” DOM, derived from terrestrial and aquatic plants, including algae and cyanobacteria that are common in the McKenzie River and its tributaries and reservoirs. The fluorescence data and PARAFAC modeling suggest that most of the DOC in the McKenzie River originated from terrestrial sources (primarily components C1 and C2). The largest increases in DOC in the main stem occurred in the reach upstream of Vida, from inflows by Quartz Creek, Blue River, South Fork McKenzie River, and other tributaries. Concentrations of DBPs in EWEB’s finished drinking water were positively correlated with DOC concentrations in raw source water (THM4, p <0.05; HAA5, p <0.01) for paired samples collected 12−24 hours apart. DOC concentrations were significantly positively correlated ( p <0.001) with laboratory-based fluorescent dissolved organic matter (fDOM) measurements, suggesting fDOM as a useful parameter for monitoring and predicting DOC concentration in surface water and DBP concentrations in finished water. Of all the PARAFAC components in surface water, C5 had the highest correlations with DBPs in finished water (rho = 0.77–0.84, p <0.01), followed by components C1 and C2 (rho = 0.75 and 0.71, respectively, p <0.01). This C5 carbon is associated with recently produced DOM, possibly from decomposed terrestrial and aquatic vegetation. Model loadings of these three components were considerably higher in the sampled tributaries relative to the main stem McKenzie River, with most of the observed increases in the main stem apparent at Vida. This points to Quartz Creek or other tributaries in the reach between Frissell Bridge and the sampling site near Vida (South Fork McKenzie and Blue Rivers) as potentially key contributors of DOM source material that leads to the production of DBPs in treated drinking water. A limited load analysis showed that the reservoirs contributed 8–37 percent of the instantaneous DOC loads observed at Vida at the time of sampling, which suggests other sources such as Quartz Creek and other streams in the reach between Frissell Bridge and Vida are more important. Random forest analyses identified PARAFAC components C1 and C5 and fluorescence peaks A, C, M, T and N as the best predictors for HAA5 concentrations in finished drinking water, explaining 62.5 percent of the variation. The best predictors for THM4 were C1, C4 + C5, and peaks T, A, and N, which explained 33 percent of the variation. Several land cover and vegetation classes were correlated with DOC concentration and other optical measurements. The percentage of evergreen forest in each of the subwatersheds sampled was negatively correlated ( p <0.001) with DOC concentration and many optical indicators of DOM quantity: UVA 254 , fDOM, and all of the fluorescence peaks. In contrast, mixed (deciduous) forest was positively correlated ( p <0.001) with DOC, fDOM, UVA 254 , and several fluorescence peaks, demonstrating the importance of deciduous leaf fall in generating DOC and DBP precursors. The high level of human activities in the middle and lower portion of the basin—including timber harvesting and road construction on private forestland, agricultural, rural, industrial, and urban development—have resulted in the greatest loss in native coniferous and mixed deciduous forests in the basin. DOC loading from these tributaries and reservoir releases, which contain DOC from terrestrial and aquatic productivity, both enrich the McKenzie River. Concentrations of DOC increased an average of 71 percent (range 30–120 percent) in the McKenzie River between Frissell Bridge, the upstream reference site, and Vida. PARAFAC components C1, C2, and C5—which were correlated with DBPs in finished water—increased, on average, 109–136 percent (range 20–250 percent) in this same Frissell-to-Vida reach. These increases occur from input of tributaries in the middle basin such as Quartz Creek and others, as noted above. Future monitoring, field, and lab studies can improve our understanding of seasonal and spatial sources of organic carbon contributing DBP precursors to the McKenzie River and allow detection of long-term trends resulting from the recent Holiday Farm Fire, which burned 173,393 acres of forestland, including riparian areas along the main stem, and numerous structures, homes, and outbuildings in September 2020. Future studies could examine DOC fluxes and flushing of carbon from the watershed, investigate the role of precipitation amount and intensity in mobilizing carbon and sediment, and evaluate impacts to aquatic communities and human health as part of a post-fire assessment. Other areas ripe for study include evaluating the impacts of potential temperature increases on carbon sequestration and decomposition in the burned and unburned forests and identifying practices that foster sequestration of carbon in forest soils. The use of fluorescence sensors such as fDOM to monitor the concentration and composition of raw water supplies may be improved for detection of specific DBP precursors, to provide continuous and real-time information to treatment plant operators. Future studies that monitor DOM amount and quality, and DBP Formation Potential (FP), particularly during storm events, paired with streamflow measurements, as suggested above, could help identify areas that contribute high DOC loads and thus help managers identify the key areas to focus restoration activities. Other studies could examine treatment options for currently regulated DBPs and potentially unregulated compounds, including advanced biological treatments for their removal. This study was a collaboration between the U.S. Geological Survey (USGS) and EWEB in Eugene, Oregon, with additional funding provided from USGS Cooperative Matching Funds Program.

Oregon↗

Water quality of the Tlikakila River and five major tributaries to Lake Clark, Lake Clark National Park and Preserve, Alaska, 1999-2001

The Tlikakila River Basin, located in Lake Clark National Park and Preserve, drains an area of 622 square miles. This watershed comprises about 21 percent of the Lake Clark Basin, making it one of the major tributaries to Lake Clark. Due to a sharp decline in sockeye salmon population and the lack of hydrologic data, the Tlikakila River and five other major tributaries to Lake Clark were studied during the summer runoff months (May through September) from 1999 through 2001 as part of a cooperative study with the National Park Service. Measurements of pH and dissolved oxygen concentrations of the Tlikakila River are within acceptable limits for fish survival. Water temperatures at the measurement site reach 0 ?C during the winter and this part of the Tlikakila River may not be suitable for fish. Water temperatures are within acceptable limits for fish during the summer months. The Tlikakila River is a calcium bicarbonate type water with a low buffering capacity. Concentrations of un-ionized ammonia are well below the recommended value of 0.02 mg/L for fish propagation. Annual transport of suspended sediment by the Tlikakila River into Lake Clark ranged from 0.4 to 1.5 million tons during 1999?2001. The fine sediment from the Tlikakila River disperses through the lake over the summer, affecting light transmissivity. Most runoff from the Tlikakila River occurs from mid-to-late May through September. Average discharge for these months during 1999?2001 was 6,600 ft?/s. Total annual inflow to Lake Clark from the Tlikakila River ranged from 32 to 45 percent of the total inflow. The relatively high proportion of inflow is due to the presence of glaciers, which comprise 36 percent of the watershed. Monthly measurements of flow, field water-quality parameters, alkalinity, and suspended sediment were collected on the remaining five tributaries to Lake Clark: the Chokotonk River, Currant Creek, the Kijik River, the Tanalian River and the Chulitna River. Similar to the Tlikakila River, pH and dissolved oxygen concentrations of these rivers are within acceptable limits for fish survival and the rivers have a low buffering capacity. Small amounts of suspended sediment are transported by the Kijik and Tanalian Rivers due to lakes acting as settling basins in their watersheds. The Chulitna River also transports small amounts of suspended sediment due to its flat topography and the presence of many lakes in the basin. Some suspended sediment is transported by the Chokotonk River and Currant Creek during the runoff season due to the presence of glaciers within their basins, but not as much as the Tlikakila River. The Chulitna River provides the most discharge into Lake Clark after the Tlikakila River and has the warmest water temperature of the major tributaries to Lake Clark. Water temperatures of Currant Creek and the Chokotonk River are similar to the Tlikakila River. The Kijik River and Tanalian River have similar temperatures that may be due to the presence of lakes in their basins and are characterize by slowly declining and rising temperatures. At all sites water temperature approaches 0 ?C during winter months which may not be suitable for fish survival.

Water-Resources Investigations Report↗

Longitudinal patterns of fish assemblages, aquatic habitat, and water temperature in the Lower Crooked River, Oregon

The Lower Crooked River is a remarkable groundwater-fed stream flowing through vertical basalt canyons in the Deschutes River Valley ecoregion in central Oregon (Pater and others, 1998). The 9-mile section of the river between the Crooked River National Grasslands boundary near Ogden Wayside and river mile (RM) 8 is protected under the National Wild and Scenic Rivers Act (16 U.S.C. 1271-1287) for its outstandingly remarkable scenic, recreational, geologic, hydrologic, wildlife, and botanical values (ORVs), and significant fishery and cultural values. Groundwater springs flow directly out of the canyon walls into the Lower Crooked River and create a unique hydrologic setting for native coldwater fish, such as inland Columbia Basin redband trout (Oncorhynchus mykiss gairdneri). To protect and enhance the ORVs that are the basis for the wild and scenic designation, the Bureau of Land Management (BLM) has identified the need to evaluate, among other conditions, fish presence and habitat use of the Lower Crooked River. The results of this and other studies will provide a scientific basis for communication and cooperation between the BLM, Oregon Water Resources Department, Oregon Department of Fish and Wildlife (ODFW) and all water users within the basin. These biological studies initiated by the BLM in the region reflect a growing national awareness of the impacts of agricultural and municipal water use on the integrity of freshwater ecosystems. Biological surveys are needed to better understand the aquatic ecosystem of the Lower Crooked River. This baseline information will be valuable to public land managers whose task is to balance resource use while protecting the unique attributes (that is, ORVs) of the Lower Crooked River. The habitat requirements of coldwater fishes in this section of stream are of particular interest due to state and federal regulation of water temperature in order to protect and restore fish populations. Historical data on the distribution and abundance of stream fishes in the Lower Crooked River are limited to point observations by fishermen and local biologists because steep canyon walls have limited access to most of the river. Surveys of aquatic habitat (channel morphology and substrate composition) have been conducted for the BLM by the ODFW (Oregon Department of Fish and Wildlife, 1997), U.S. Forest Service (United States Forest Service, 2003), and the U.S. Fish and Wildlife Service (USFWS), but fish surveys using electrofishing gear have never been conducted in the isolated 11-mile section of the Crooked River Gorge, and visual observations with mask and snorkel have only been made at isolated point locations where hiking trails provide access to the river (K. Jones, Steve Marx, and Brett Hodgson, ODFW; P. Lickwar, USFWS; pers. comm.). Thus, there is a poor understanding of stream fish presence and distribution throughout Lower Crooked River. Information on fish assemblages is available for the Deschutes River basin and applies generally to the Lower Crooked River because the two rivers were connected historically (Zimmerman and Ratliff 2003). The construction of dams throughout the Deschutes River basin has eliminated historic runs of salmon and steelhead and prevented migration of bull trout and Pacific lamprey into the Crooked River system. Native fish species expected to occur in the Lower Crooked River include Columbia Basin redband trout ( Oncorhynchus mykiss gairdneri ), mountain whitefish ( Prosopium williamsoni ), sculpin ( Cottus spp.), two species of dace ( Rhinichthys spp.), two species of sucker ( Catostomus spp.), northern pikeminnow ( Ptychocheilus oregonensis ), chiselmouth ( Acrocheilus alutaceus ), and redside shiner ( Richardsonius balteatus ). Threespine stickleback ( Gasterosteus aculeatus ), a species native to western Oregon, also occurs in the basin but is believed to be introduced (D. Markle, Department of Fisheries and Wildlife, Oregon State University, personnel commun.). Extensive stocking of rainbow trout has contributed to a large population of naturalized fish of hatchery origin in the Lower Crooked River. Due to the difficulty of differentiating between wild redband trout and naturalized rainbow trout of hatchery origin, the general classification of rainbow trout ( Oncorhynchus mykiss ) is used throughout this report to describe the fish that were observed in the Lower Crooked River. Exotic fish species expected to occur in the Lower Crooked River include large- and smallmouth bass ( Micropterus spp.), yellow perch ( Perca flavescens ), and brown bullhead (Ameiurus nebulosis) (Zimmerman and Ratliff 2003). The goal of this project was to examine longitudinal patterns in fish assemblages, aquatic habitat, and water temperature in the Lower Crooked River during summer conditions. Specific objectives were to (1) characterize the spatial distribution of native and non-native fishes, (2) describe variation in channel morphology, substrate composition, and water temperature, and (3) evaluate the associations between fishes, aquatic habitat, and water temperature.

Oregon↗

Effects of recreational flow releases on natural resources of the Indian and Hudson Rivers in the Central Adirondack Mountains, New York, 2004-06

The U.S. Geological Survey (USGS), the New York State Department of Environmental Conservation (NYSDEC), and Cornell University carried out a cooperative 2-year study from the fall of 2004 through the fall of 2006 to characterize the potential effects of recreational-flow releases from Lake Abanakee on natural resources in the Indian and Hudson Rivers. Researchers gathered baseline information on hydrology, temperature, habitat, nearshore wetlands, and macroinvertebrate and fish communities and assessed the behavior and thermoregulation of stocked brown trout in study reaches from both rivers and from a control river. The effects of recreational-flow releases (releases) were assessed by comparing data from affected reaches with data from the same reaches during nonrelease days, control reaches in a nearby run-of-the-river system (the Cedar River), and one reach in the Hudson River upstream from the confluence with the Indian River. A streamgage downstream from Lake Abanakee transmitted data by satellite from November 2004 to November 2006; these data were used as the basis for developing a rating curve that was used to estimate discharges for the study period. River habitat at most study reaches was delineated by using Global Positioning System and ArcMap software on a handheld computer, and wetlands were mapped by ground-based measurements of length, width, and areal density. River temperature in the Indian and Hudson Rivers was monitored continuously at eight sites during June through September of 2005 and 2006; temperature was mapped in 2005 by remote imaging made possible through collaboration with the Rochester Institute of Technology. Fish communities at all study reaches were surveyed and characterized through quantitative, nearshore electrofishing surveys. Macroinvertebrate communities in all study reaches were sampled using the traveling-kick method and characterized using standard indices. Radio telemetry was used to track the movement and persistence of stocked brown trout (implanted with temperature-sensitive transmitters) in the Indian and Hudson Rivers during the summer of 2005 and in all three rivers during the summer of 2006. The releases had little effect on river temperatures, but increased discharges by about one order of magnitude. Regardless of the releases, river temperatures at all study sites commonly exceeded the threshold known to be stressful to brown trout. At most sites, mean and median water temperatures on release days were not significantly different, or slightly lower, than water temperatures on nonrelease days. Most differences were very small and, thus, were probably not biologically meaningful. The releases generally increased the total surface area of fast-water habitat (rapids, runs, and riffles) and decreased the total surface area of slow-water habitat (pools, glides, backwater areas, and side channels). The total surface areas of wetlands bordering the Indian River were substantially smaller than the surface areas bordering the Cedar River; however, no channel geomorphology or watershed soil and topographic data were assessed to determine whether the releases or other factors were mainly responsible for observed differences. Results from surveys of resident biota indicate that the releases generally had a limited effect on fish and macroinvertebrate communities in the Indian River and had no effect on communities in the Hudson River. Compared to fish data from Cedar River control sites, the impoundment appeared to reduce total density, biomass, and richness in the Indian River at the first site downstream from Lake Abanakee, moderately reduce the indexes at the other two sites on the Indian River, and slightly reduce the indexes at the first Hudson River site downstream from the confluence with the Indian River. The densities of individual fish populations at all Indian River sites were also reduced, but related effects on fish populations in the Hudson River were less evident. Altho

Scientific Investigations Report↗

Plankton communities and summertime declines in algal abundance associated with low dissolved oxygen in the Tualatin River, Oregon

Phytoplankton populations in the Tualatin River in northwestern Oregon are an important component of the dissolved oxygen (DO) budget of the river and are critical for maintaining DO levels in summer. During the low-flow summer period, sufficient nutrients and a long residence time typically combine with ample sunshine and warm water to fuel blooms of cryptophyte algae, diatoms, green and blue-green algae in the low-gradient, slow-moving reservoir reach of the lower river. Algae in the Tualatin River generally drift with the water rather than attach to the river bottom as a result of moderate water depths, slightly elevated turbidity caused by suspended colloidal material, and dominance of silty substrates. Growth of algae occurs as if on a “conveyor belt” of streamflow, a dynamic system that is continually refreshed with inflowing water. Transit through the system can take as long as 2 weeks during the summer low-flow period. Photosynthetic production of DO during algal blooms is important in offsetting oxygen consumption at the sediment-water interface caused by the decomposition of organic matter from primarily terrestrial sources, and the absence of photosynthesis can lead to low DO concentrations that can harm aquatic life. The periods with the lowest DO concentrations in recent years (since 2003) typically occur in August following a decline in algal abundance and activity, when DO concentrations often decrease to less than State standards for extended periods (nearly 80 days). Since 2003, algal populations have tended to be smaller and algal blooms have terminated earlier compared to conditions in the 1990s, leading to more frequent declines in DO to levels that do not meet State standards. This study was developed to document the current abundance and species composition of phytoplankton in the Tualatin River, identify the possible causes of the general decline in algae, and evaluate hypotheses to explain why algal blooms diminish in midsummer. Plankton and water-quality sample data from 2006 to 2008 were combined with parts of a larger discrete-sample and continuous water-quality monitoring dataset and examined to identify patterns in water-quality and algal conditions since 1991, with a particular emphasis on 2003–08. Longitudinal plankton surveys were conducted in 2006–08 at six sites between river miles (RM) 24.5 and 3.4 at 2- to 3-week intervals, or 5–6 per season, and in-situ bioassay experiments were conducted in 2008 to examine the potential effects of wastewater treatment facility (WWTF) effluent and phosphorus additions on phytoplankton biomass and algal photosynthesis. Phytoplankton and zooplankton community composition, streamflow, and water-quality data were analyzed using multivariate statistical techniques to gain insights into plankton dynamics to determine what factors might be most tied to the abundance and characteristics of the phytoplankton assemblages, and identify possible causes of their declines. The connection between low-DO events and algal declines was clearly evident, as bloom crashes were nearly always followed by periods of low DO. Algal blooms occurred each year during 2006–08, producing maximum chlorophyll-a (Chl-a) values in June or July generally in the range of 50–80 micrograms per liter (µg/L). Bloom crashes and absence of sufficient algal photosynthesis in mid- to late-summer contributed to minimum DO concentrations that were less than the State standard of 6.5 milligrams per liter (mg/L) based on the 30-day mean daily concentration, for 62–74 days each year. At times, the absolute minimum State standard (4 mg/L DO) also was not met. To learn more about why low-DO events occurred, specific algal declines during 2003–08 were scrutinized to determine their likely causal factors. From this information, a series of hypotheses were formulated and evaluated in terms of their ability to explain recent declines in algal populations in the river in late summer. Meteorological, streamflow, turbidity, water temperature, and conductance conditions in the Tualatin River during the 2006–08 summer seasons were not atypical. Natural flow comprised the majority (70–80 percent) of flow each year during spring, but then reduced to 38–40 percent during midsummer when WWTF effluent—which contributed as much as 36 percent—and flow augmentation releases comprised a greater fraction of the flow. Summer 2008 was unusual, however, in the prolonged influence from the Wapato Lake agricultural area near Gaston in the upper part of the basin. The previous winter flooding and levee breach at Wapato Lake caused a much greater area of inundation. As a result, drainage from this area continued into July, much later than normal. A subsequent algal bloom in Wapato Lake then seeded the upper Tualatin River, and this drainage had a profound effect on the downstream plankton community. A large blue-green algae bloom developed—the largest in recent memory—prompting a public health advisory for recreational contact for about two weeks. Algal growths and surface blooms are a common feature of the Tualatin River. Most of the dominant algae have growth forms and morphologies that are well suited for planktonic life, employing spines and gas vacuoles to resist settling, forming colonies, and producing mucilage (or toxins) to resist zooplankton grazing. In 2006–08, 143 algal taxa were identified in 117 main-stem samples; diatoms and green algae were more diverse than blue-green, golden, and cryptophyte algae, although these later groups sometimes dominated the overall volumetric abundance (biovolume). The most frequently occurring taxa, occurring in 97–99 percent of samples, were flagellated cryptophytes Cryptomonas erosa and Rhodomonas minuta. Other important algal taxa included centric diatoms Stephanodiscus, Cyclotella, and Melosira species and colonial green algae Scenedesmus and Actinastrum. These taxa comprised the majority of the algal biovolume during much of the growing season. A general seasonal trend in the phytoplankton assemblages was observed, with dominance by filamentous centric diatoms Stephanodiscus and Melosira in spring and early summer, and flagellated cryptophytes and green algae, particularly Chlamydomonas sp., in late-summer; or, in 2008, dominance by blue-green algae Anabaena flos-aquae and Aphanizomenon flos-aquae during the Wapato Lake bloom event. There were 99 zooplankton taxa identified from the Tualatin River in 2006–08, composed primarily of cladocerans, copepods, and rotifers. A seasonal increase in zooplankton abundance was observed in early summer just as or shortly after the phytoplankton population began to increase, with populations growing to 15,000−120,000 organisms per cubic meter in the lower river. Zooplankton abundance showed a predictable and distinct longitudinal downstream increase, particularly downstream of Highway 99W (RM 11.6). Although grazing rates were not measured, the data suggest that, at times, zooplankton grazing may affect algal abundance and species composition in the Tualatin River, with diatoms becoming relatively less abundant and flagellated cryptophytes and green algae relatively more abundant during periods when zooplankton densities were highest. Multivariate statistical analyses identified soluble reactive phosphorus (SRP), natural flow, flow augmentation, and WWTF effluent as important factors influencing Tualatin River phytoplankton populations, with zooplankton density (particularly rotifers and copepods), specific conductance, chloride, and water temperature also having an important influence. Although SRP was highly correlated with the plankton communities, that correlation was likely the result of high or low algal activity (uptake) as SRP concentrations were often reduced to low levels during blooms. While previous studies have already established that phosphorus, among other factors such as flow, places a theoretical cap on the size of the phytoplankton population in the river, sometimes algal declines occur when SRP concentrations are apparently sufficient. To identify alternative causal factors, additional analyses were performed without SRP to focus on other water-quality parameters, zooplankton density, and flow factors. Considering data for all 3 years and including just those samples from the lower Tualatin River not affected by the 2008 Wapato Lake drainage event, three factors (percentage of reservoir flow augmentation, total natural flow, and rotifer density) best explained variations in the phytoplankton assemblages. Analyses focusing on the possible causes of algal declines included the above multivariate analyses, scrutiny of 10 specific instances of declines in algal populations during 2003–08 including several bloom–crash sequences, and analyses of historic routine watershed monitoring data from Clean Water Services. Six factors were hypothesized to be important in causing bloom crashes or impeding blooms from rebounding in August: (1) light limitation from cloudy weather, (2) a reduction in the plankton inocula or “seed” entering the lower river from upstream sources, (3) increased summer streamflows, (4) changes in the dominant sources of flow as the percentage of flow augmentation and WWTF discharges have increased, (5) zooplankton grazing, and (6) low concentrations of bioavailable phosphorus (<0.015 milligram per liter). All of these hypotheses are supported in some fashion by the available data and statistical analyses. Zooplankton grazing, short-term declines in photosynthesis from cloudy weather, total flow as it affects residence time, and the dominant source of flow are primary factors responsible for the low-DO events caused by declines in algae in the lower Tualatin River during late summer. Cloudy weather and increased turbidity are known to inhibit algal growth in the Tualatin River, and slight increases in turbidity in recent years may be a problem. Upstream sources of algae are critical in determining the characteristics and size of downstream populations, as illustrated by the Wapato Lake bloom in 2008, but more data are needed from upstream to fully define the importance of this connection. The sources of flow, through their differential contribution of plankton inocula (quality and amount), were, at times, important factors affecting phytoplankton populations. While SRP concentrations were often most highly correlated with phytoplankton species community, the bioavailability of phosphorus is still somewhat unknown and there are several sources to consider. Preliminary bioassay tests suggested that while treated wastewater effluent may stimulate algae at 30 percent concentrations, negative effects (or decreased stimulation) on Chl-a and DO production may occur at concentrations of 50 percent. Targeted data collection and future research will be needed to further understand the importance of these factors on Tualatin River phytoplankton. While the data and analysis completed for this report provide insights into future research and monitoring that would be useful to continue, additional monitoring of turbidity, Chl-a, and plankton abundance and species composition in the upper part of the basin would enhance our understanding of plankton dynamics and factors affecting phytoplankton abundance in the lower river. Assessment of the key upstream sources of algal inocula via surveys of the major flow sources as well as tributaries and wetlands would provide useful information for the management of river water quality. Other studies that could prove useful for developing management strategies include targeted experiments to evaluate the bioavailability of phosphorus from a variety of sources. New research on phytoplankton–zooplankton interactions, and studies of planktivorous fish, might also provide insight about food web dynamics and potential “top-down” effects of fish predation on the plankton communities. In addition, further development of neural-network or other water-quality models would help to evaluate management strategies and provide forecasts of water-quality conditions. Finally, periodic future reassessments of the available data with the multivariate statistical tools used in this study would be helpful to assess whether and how plankton communities are changing, and to continue to shed light on the importance of factors shaping the plankton. Although certain types and sizes of algal blooms are undesirable, minimum phytoplankton populations are an important part of aquatic food webs and are needed to maintain healthy levels of DO in the river. By understanding the sources, characteristics, causal factors, and responses of the plankton communities, management strategies can be developed to improve DO conditions in the lower Tualatin River during the important summer low-flow period.

Oregon↗

Trends in major-ion constituents and properties for selected sampling sites in the Tongue and Powder River watersheds, Montana and Wyoming, based on data collected during water years 1980-2010

The primary purpose of this report is to present information relating to flow-adjusted temporal trends in major-ion constituents and properties for 16 sampling sites in the Tongue and Powder River watersheds based on data collected during 1980–2010. In association with this primary purpose, the report presents background information on major-ion characteristics (including specific conductance, calcium, magnesium, potassium, sodium adsorption ratio, sodium, alkalinity, chloride, fluoride, dissolved sulfate, and dissolved solids) of the sampling sites and coal-bed methane (CBM) produced water (groundwater pumped from coal seams) in the site watersheds, trend analysis methods, streamflow conditions, and factors that affect trend results. The Tongue and Powder River watersheds overlie the Powder River structural basin (PRB) in northeastern Wyoming and southeastern Montana. Limited extraction of coal-bed methane (CBM) from the PRB began in the early 1990’s, and increased dramatically during the late 1990’s and early 2000’s. CBM-extraction activities produce discharges of water with high concentrations of dissolved solids (particularly sodium and bicarbonate ions) relative to most stream water in the Tongue and Powder River watersheds. Water-quality of CBM produced water is of concern because of potential effects of sodium on agricultural soils and potential effects of bicarbonate on aquatic biota. Two parametric trend-analysis methods were used in this study: the time-series model (TSM) and ordinary least squares regression (OLS) on time, streamflow, and season. The TSM was used to analyze trends for 11 of the 16 study sites. For five sites, data requirements of the TSM were not met and OLS was used to analyze trends. Two primary 10-year trend-analysis periods were selected. Trend-analysis period 1 (water years 1986–95; hereinafter referred to as period 1) was selected to represent variability in major-ion concentrations in the Tongue and Powder River watersheds before potential effects of CBM-extraction activities. Trend analysis period 2 (water years 2001–10; hereinafter referred to as period 2) was selected because it encompassed substantial CBM-extraction activities and therefore might indicate potential effects of CBM-extraction activities on water quality of receiving streams in the Tongue and Powder River watersheds. For sites that did not satisfy data requirements for the TSM, OLS was used to analyze trends for period 2 (if complete data were available) or a 6-year period (2005–10). Flow-rate characteristics of CBM-produced water were estimated to allow general comparisons with streamflow characteristics of the sampling sites. The information on flow-rate characteristics of CBM-produced water in relation to streamflow does not account for effects of disposal, treatment, or other remediation activities on the potential quantitative effects of CBM-produced water on receiving streams. In many places, CBM-produced water is discharged into impoundments or channels in upper reaches of tributary watersheds where water infiltrates and does not directly contribute to streamflow. For Tongue River at State line (site 4) mean annual pumping rate of CBM-produced water during water years 2001–10 (hereinafter referred to as mean CBM pumping rate) was 6 percent of the mean of annual median streamflows during water years 2001–10 (hereinafter referred to as 2001–10 median streamflow). For main-stem Tongue River sites 5, 7, and 10, mean CBM pumping rate was 8–12 percent of 2001–10 median streamflow. For main-stem Powder River sites (sites 12, 13, and 16), mean CBM pumping rates were 26, 28, and 34 percent of 2001–10 median streamflows, respectively. For main-stem Tongue River sites analyzed by using the TSM and downstream from substantial CBM-extraction activities [Tongue River at State line (site 4), Tongue River at Tongue River Dam (site 5), Tongue River at Birney Day School (site 7), and Tongue River at Miles City (site 10)], generally small significant or nonsignificant decreases in most constituents are indicated for period 1. For period 2 for these sites, the TSM trend results do not allow confident conclusions concerning detection of effects of CBM-extraction activities on stream water quality. Detection of significant trends in major-ion constituents and properties for period 2 generally was infrequent, and direction, magnitudes, and significance of fitted trends were not strongly consistent with relative differences in water quality between stream water and CBM-produced water. The TSM indicated significant or generally large magnitude increases in median values of sodium adsorption ratio (SAR), sodium, and alkalinity for period 2 for sites 5 and 7, which might indicate potential effects of CBM-extraction activities on stream water. However, other factors, including operations of Tongue River Reservoir, irrigation activities, contributions of saline groundwater, and operations of the Decker coal mine, confound confident determination of causes of detected significant trends for sites 5 and 7. For all mainstem Tongue River sites, trends for period 2 generally are within ranges of those for period 1 before substantial CBM-extraction activities. For main-stem Powder River sites analyzed by using the TSM [Powder River at Sussex (site 11), Powder River at Arvada (site 12), Powder River at Moorhead (site 13), and Powder River near Locate (site 16)], significant or generally large magnitude decreases in median values of SAR, sodium, estimated alkalinity, chloride, fluoride, specific conductance, and dissolved solids are indicated for period 1. Patterns in trend results for period 1 for main-stem Powder River sites are consistent with effects of Salt Creek oil-brine reinjection that started in 1990. Trend results for all main-stem Powder River sites downstream from substantial CBM-extraction activities (sites 12, 13, and 16) indicate evidence of potential effects of CBM-extraction activities on stream water quality, although evidence is stronger for sites 12 and 13 than for site 16. Evidence in support of potential CBM effects includes significant increases in median values of SAR, sodium, and estimated alkalinity for period 2 for sites 12, 13, and 16 that are consistent with relative differences between stream water and CBM-produced water. Significant increases in median values of these constituents for period 2 are not indicated for Powder River at Sussex (site 11) upstream from substantial CBM-extraction activities. In interpreting the trend results, it is notable that the fitted trends evaluate changes in median concentrations and also notable that changes in median concentrations that might be attributed to CBM-extraction activities probably are more strongly evident during low to median streamflow conditions than during mean to high streamflow conditions. This observation is relevant in assessing trend results in relation to specific water-quality concerns, including effects of water-quality changes on irrigators and effects on stream biota and ecology.

Montana;Wyoming↗

Groundwater discharge characteristics for selected streams within the Loup River Basin, Nebraska, 2014–16

Streams in the Loup River Basin are sensitive to groundwater withdrawals because of the close hydrologic connection between groundwater and surface water. Groundwater discharge is the primary component of streamflow in the Loup River Basin and constitutes more than 90 percent of streamflow in the central part of the Sand Hills. To improve the understanding of geologic controls and various climatic and land-use changes on groundwater discharge, the U.S. Geological Survey (USGS), in cooperation with the Upper Loup Natural Resources District (NRD), the Lower Loup NRD, and the Nebraska Environmental Trust, studied the spatial and temporal characteristics of groundwater discharge within the Loup River Basin. This report documents the methods of data collection and analysis, which include the collection of approximately 350 river miles of aerial thermal infrared imagery and continuous groundwater-level and temperature data from six streamflow-gaging stations within the Loup River Basin. The results from the stream reconnaissance and examination of aerial thermal infrared imagery demonstrated the influence of the surficial and subsurface geology on the spatial characteristics of groundwater discharge to streams in the Loup River Basin. At the headwaters of the South Loup River, streamflow is sustained and increased from focused groundwater discharge emanating from Quaternary deposits at many small (less than 0.1 cubic foot per second) focused points. The volume of water produced from this dense network of focused groundwater discharge points along the North Fork South Loup River is sufficient to provide approximately 40 percent of the flow measured at the South Loup River at Arnold, Nebraska streamflow-gaging station (USGS station 06781600) during the irrigation season. Approximately 5 miles downstream from the South Loup River at Arnold, Nebr., streamflow-gaging station, the river incises into Pliocene-age sand and gravel deposits, which provide additional groundwater discharge to the stream. The streamflow of the South Loup River increases by a factor of 5 across a 62-mile reach of the middle South Loup River. Increases in streamflow along the upper Dismal River result from a dense network of focused groundwater discharge points within semiconsolidated Pliocene-age deposits. Below the Dismal River near Thedford, Nebr., streamflow-gaging station (USGS station 06775900), the Dismal River incises into the Ogallala Formation over a short reach before flowing over coarser, more permeable Quaternary-age alluvial deposits. Diffuse groundwater discharge sustains and increases the streamflow of the lower Dismal River in this reach. Groundwater sapping was evident on some stream reaches and has increased the size and flow of focused groundwater discharge points. Previous researchers have documented streambed incision and groundwater sapping on the upper Dismal River that have created and enlarged focused groundwater discharge points capturing additional groundwater. Similar processes appear to have played a role in the formation of larger focused groundwater discharge points, which sustain the flow of the middle South Loup River. The constant flow of groundwater into the South Loup River has removed finer-grained Quaternary sediments and further exposed Pliocene-age gravel deposits. Headward erosion is evident where some of the large focused groundwater discharge points have incised their own draws and terminate in bowl-like depressions away from the stream. Within the Loup River NRDs, the percentage of groundwater-irrigated land in a stream basin is one factor that affects groundwater discharge to streams. A striking example was at the South Loup River at Saint Michael, Nebr., groundwater and streamflow-gaging station (USGS station 06784000) where the shallow groundwater levels declined below the level of the stream during the middle to late part of the growing season (July to September) when consumptive groundwater use was at its peak. The South Loup River Basin above the South Loup River at Saint Michael, Nebr., streamflow-gaging station has the highest percentage of groundwater-irrigated row crops of all the basins examined in this study. Continuous groundwater and surface-water levels measured at the North Loup River at the Taylor, Nebr., streamflow-gaging station (USGS station 06786000) indicate that the stream is receiving groundwater throughout the year; however, when consumptive groundwater use peaks during the middle to late part of the growing season (July to September), the difference in elevation between the groundwater level and the stream elevation decreases, which indicates a reduction in the amount of groundwater discharge received.

Nebraska↗